BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030254
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus
 pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
 pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
           A Japonicus In Complex With Glucose
          Length = 634

 Score = 32.7 bits (73), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 62  FQRGDILFLQMSKDPIRTGEI-VVFNIQGRDIPIVHRVIEVHEQR-QSGEVRILTKGDNN 119
           F+ G++LFL       +TGE+ V    +G  +PIV +V  +H+    +GEV + ++ +  
Sbjct: 272 FETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLPIVPQVSSIHDMLWAAGEVGVGSEQEGA 331

Query: 120 DVD 122
            V+
Sbjct: 332 KVE 334


>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
 pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With 1-Kestose
 pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja Complex With Nystose
 pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Ja
 pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
           Japonicus In Complex With Raffinose
          Length = 634

 Score = 32.7 bits (73), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 62  FQRGDILFLQMSKDPIRTGEI-VVFNIQGRDIPIVHRVIEVHEQR-QSGEVRILTKGDNN 119
           F+ G++LFL       +TGE+ V    +G  +PIV +V  +H+    +GEV + ++ +  
Sbjct: 272 FETGNVLFLTEEGHDPQTGEVFVTLGTEGSGLPIVPQVSSIHDMLWAAGEVGVGSEQEGA 331

Query: 120 DVD 122
            V+
Sbjct: 332 KVE 334


>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
           With Biphenyl From Comamonas Testosteroni Sp. Strain
           B-356
 pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
           Comamonas Testosteroni Sp. Strain B-356
          Length = 457

 Score = 26.6 bits (57), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 110 VRILTKGDNNDVDDRMLYAQGQFWLKQEHIMGRA------VGFLPYVG-WATIIMTEKPI 162
           +R L   DN  +D R+   Q  + L+ E + GR+         +P +G + T  M E P+
Sbjct: 24  IRALVDQDNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPV 83

Query: 163 I 163
           I
Sbjct: 84  I 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.144    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,607,179
Number of Sequences: 62578
Number of extensions: 165375
Number of successful extensions: 411
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)