Query 030254
Match_columns 180
No_of_seqs 142 out of 1414
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.8 1.6E-18 5.5E-23 143.4 10.6 57 48-105 7-79 (248)
2 1kca_A Repressor protein CI; g 99.3 3.2E-11 1.1E-15 87.8 10.9 82 50-147 15-102 (109)
3 1umu_A UMUD'; induced mutagene 99.3 3E-11 1E-15 88.4 9.7 83 50-148 29-112 (116)
4 2hnf_A Repressor protein CI101 99.2 1.2E-10 4E-15 87.3 10.3 81 50-146 46-132 (133)
5 1jhf_A LEXA repressor; LEXA SO 99.1 3.4E-10 1.2E-14 89.7 10.8 88 50-151 112-200 (202)
6 3k2z_A LEXA repressor; winged 98.9 2.2E-08 7.5E-13 79.3 11.1 83 50-148 111-194 (196)
7 3bdn_A Lambda repressor; repre 98.8 8.4E-09 2.9E-13 82.9 8.3 82 50-147 142-229 (236)
8 2fjr_A Repressor protein CI; g 97.2 0.001 3.5E-08 51.2 7.9 74 55-147 112-185 (189)
9 2qjy_C Ubiquinol-cytochrome C 70.1 9.2 0.00032 29.5 5.8 24 74-97 54-77 (187)
10 3cx5_E Cytochrome B-C1 complex 67.1 15 0.00051 28.2 6.5 31 65-97 61-91 (185)
11 3i4o_A Translation initiation 60.3 3.7 0.00013 27.7 1.5 15 74-88 51-65 (79)
12 1w4s_A Polybromo, polybromo 1 50.7 29 0.00098 26.1 5.4 47 58-104 5-55 (174)
13 1jt8_A EIF-1A, probable transl 47.6 7.8 0.00027 27.3 1.6 27 62-88 39-70 (102)
14 3iuw_A Activating signal coint 46.3 41 0.0014 22.7 5.0 18 70-87 31-48 (83)
15 2dgy_A MGC11102 protein; EIF-1 45.9 15 0.00051 26.2 2.9 50 53-102 24-79 (111)
16 2l8d_A Lamin-B receptor; DNA b 38.9 77 0.0026 20.4 5.2 40 73-116 6-45 (66)
17 1d7q_A Translation initiation 36.9 40 0.0014 25.1 4.1 21 63-83 71-91 (143)
18 2dig_A Lamin-B receptor; tudor 32.6 1E+02 0.0035 20.0 5.2 41 73-117 9-49 (68)
19 3s52_A Putative fumarylacetoac 31.6 21 0.00072 28.1 1.9 30 61-90 183-214 (221)
20 4dbf_A 2-hydroxyhepta-2,4-dien 30.4 61 0.0021 26.6 4.7 38 61-99 247-286 (288)
21 2eko_A Histone acetyltransfera 29.9 47 0.0016 22.5 3.3 18 55-72 3-20 (87)
22 2lkt_A Retinoic acid receptor 29.8 42 0.0015 23.6 3.2 24 74-101 5-28 (125)
23 2kku_A Uncharacterized protein 28.8 43 0.0015 25.4 3.1 45 56-100 36-87 (161)
24 2dfu_A Probable 2-hydroxyhepta 27.5 75 0.0026 25.6 4.7 39 61-100 218-258 (264)
25 1pp9_E Ubiquinol-cytochrome C 27.4 26 0.00089 27.2 1.8 24 74-97 78-101 (196)
26 2wqt_A 2-keto-4-pentenoate hyd 27.1 52 0.0018 26.5 3.6 30 61-90 222-253 (270)
27 1hr0_W Translation initiation 27.1 45 0.0015 21.3 2.7 15 74-88 44-58 (71)
28 2qqr_A JMJC domain-containing 26.1 98 0.0034 22.2 4.5 43 75-123 4-46 (118)
29 1wzo_A HPCE; structural genomi 25.7 71 0.0024 25.2 4.1 38 61-99 204-243 (246)
30 1yel_A AT1G16640; CESG, protei 25.2 51 0.0018 22.3 2.8 18 74-91 75-92 (104)
31 3rr6_A Putative uncharacterize 23.7 62 0.0021 26.2 3.5 38 61-99 222-261 (265)
32 3bbo_M Ribosomal protein L14; 23.1 1.4E+02 0.0048 21.4 4.9 33 51-83 22-58 (121)
33 2k1g_A Lipoprotein SPR; soluti 22.9 46 0.0016 24.2 2.3 15 74-88 65-79 (135)
34 2q18_X 2-keto-3-deoxy-D-arabin 22.2 98 0.0034 25.1 4.5 39 61-100 245-288 (293)
35 3v2d_O 50S ribosomal protein L 22.1 1.5E+02 0.005 21.3 4.8 33 51-83 22-58 (122)
36 1saw_A Hypothetical protein FL 21.8 62 0.0021 25.2 3.0 38 61-99 182-221 (225)
37 2jyx_A Lipoprotein SPR; soluti 21.7 52 0.0018 23.6 2.4 16 73-88 64-79 (136)
38 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 21.5 39 0.0013 27.1 1.8 29 61-89 228-258 (267)
39 2if6_A Hypothetical protein YI 21.1 42 0.0014 25.2 1.8 13 75-87 3-15 (186)
40 3r8s_K 50S ribosomal protein L 20.6 1.7E+02 0.0056 21.1 4.8 33 51-83 22-58 (122)
41 2oqk_A Putative translation in 20.3 73 0.0025 22.5 2.9 51 51-102 39-95 (117)
42 1lgp_A Cell cycle checkpoint p 20.2 49 0.0017 22.7 1.9 37 51-88 60-96 (116)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.77 E-value=1.6e-18 Score=143.36 Aligned_cols=57 Identities=23% Similarity=0.440 Sum_probs=49.2
Q ss_pred cCeEEEcCCCccccCcCCCEEEEEec---------------CCCCCcCcEEEEEeCCC-CcCEEEEEEEecccc
Q 030254 48 SPVVVVLSESMEPGFQRGDILFLQMS---------------KDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQR 105 (180)
Q Consensus 48 ~p~~~V~~~SM~P~l~~GD~v~v~~~---------------~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d~ 105 (180)
++ +.|.|+||+|||++||.|++++. ..++++||||+|+.|.+ +..++|||++++||+
T Consensus 7 ~~-~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 7 EP-FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp EE-EECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred EE-EEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 55 89999999999999999999982 26899999999998753 357999999998874
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.28 E-value=3.2e-11 Score=87.84 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=64.1
Q ss_pred eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254 50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD 123 (180)
Q Consensus 50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|++||++++++ ..+++.||+++++.+++ ..++||++... + .+++++||....+
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~-~~~~~~Gdivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~ 85 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFKKLIRDS-G------QVFLQPLNPQYPM 85 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEET-TSCCCTTCEEEEECSTT-CEEEEEEEEET-T------EEEEECSSTTSCC
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEec-CCcCCCCCEEEEEECCC-eEEEEEEEEeC-C------EEEEEECCCCCCC
Confidence 4789999999 9999999999998 45799999999998763 57999999743 2 5789999865333
Q ss_pred hhhhccCCceeccceEeeEEEEEE
Q 030254 124 RMLYAQGQFWLKQEHIMGRAVGFL 147 (180)
Q Consensus 124 ~~~y~~~~~~V~~~~IiG~v~~~i 147 (180)
.. . -...+|+|+|+..+
T Consensus 86 ~~-~------~~~~~IiG~Vv~~~ 102 (109)
T 1kca_A 86 IP-C------NESCSVVGKVIASQ 102 (109)
T ss_dssp EE-C------CTTCEEEEEEEEEE
T ss_pred EE-c------CCCcEEEEEEEEEE
Confidence 11 1 13578999998653
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.26 E-value=3e-11 Score=88.41 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=63.1
Q ss_pred eEEEcCCCccc-cCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254 50 VVVVLSESMEP-GFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128 (180)
Q Consensus 50 ~~~V~~~SM~P-~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+||+| +|++||++++++ ..+++.|||++++.++ ..++||+...+ .+++++||...++. ...
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~-~~~~~~gdivv~~~~~--~~~vKr~~~~~--------~~~L~s~N~~y~~~-~i~ 96 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDS-AITASHGDIVIAAVDG--EFTVKKLQLRP--------TVQLIPMNSAYSPI-TIS 96 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEET-TSCCCTTCEEEEEETT--EEEEEEEECSS--------SCEEECSSTTSCCE-ECC
T ss_pred EEEECCCCcCCCCCCCCCEEEEEc-CCCCCCCCEEEEEECC--EEEEEEEEeCC--------cEEEECCCCCCCCE-EcC
Confidence 47899999999 899999999998 4569999999999875 47999998743 37789998653332 111
Q ss_pred cCCceeccceEeeEEEEEEc
Q 030254 129 QGQFWLKQEHIMGRAVGFLP 148 (180)
Q Consensus 129 ~~~~~V~~~~IiG~v~~~iP 148 (180)
. -..-+|+|+|+..+.
T Consensus 97 ~----~~~~~IiG~Vv~~~r 112 (116)
T 1umu_A 97 S----EDTLDVFGVVIHVVK 112 (116)
T ss_dssp T----TSCEEEEEEEEEEEC
T ss_pred C----CCeEEEEEEEEEEEE
Confidence 0 123579999987664
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.19 E-value=1.2e-10 Score=87.33 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=63.4
Q ss_pred eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254 50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD 123 (180)
Q Consensus 50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|++||+|++++ ..+++.||+++++.+++ ..++||+.... + .++++.||....+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~-~~~~~~Gdivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~ 116 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFAKLIRDS-G------QVFLQPLNPQYPM 116 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEET-TSCCCTTSEEEEEETTT-EEEEEEEEEET-T------EEEEECSSTTSCC
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEcc-CCCCCCCCEEEEEECCC-EEEEEEEEEeC-C------eEEEEECCCCCCC
Confidence 4789999999 9999999999998 56799999999998763 57999998742 2 5789999865333
Q ss_pred hhhhccCCceeccceEeeEEEEE
Q 030254 124 RMLYAQGQFWLKQEHIMGRAVGF 146 (180)
Q Consensus 124 ~~~y~~~~~~V~~~~IiG~v~~~ 146 (180)
.. . -..-+|+|+|+..
T Consensus 117 ~~-~------~~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 117 IP-C------NESCSVVGKVIAS 132 (133)
T ss_dssp EE-C------STTEEEEEEEEEE
T ss_pred EE-c------CCCCEEEEEEEEE
Confidence 21 1 1456899999864
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=99.13 E-value=3.4e-10 Score=89.70 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=64.0
Q ss_pred eEEEcCCCcccc-CcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254 50 VVVVLSESMEPG-FQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128 (180)
Q Consensus 50 ~~~V~~~SM~P~-l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+||+|+ |++||+|++++ ..+++.|||+++..++ ...+||+.. +++ .+.+..||...++ ....
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~-~~~~~~G~i~v~~~~~--~~~vKrl~~-~~~------~~~l~s~N~~y~~-~~~~ 180 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHK-TQDVRNGQVVVARIDD--EVTVKRLKK-QGN------KVELLPENSEFKP-IVVD 180 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEE-CSCCCTTSEEEEEETT--EEEEEEEEE-ETT------EEEEECSSTTCCC-EEEE
T ss_pred EEEECCCCCCCCCCCCCCEEEEec-cCCcCCCeEEEEEECC--EEEEEEEEE-eCC------EEEEEECCCCCCC-EEcc
Confidence 467899999999 99999999998 4679999999999864 479999994 443 6889999854332 2111
Q ss_pred cCCceeccceEeeEEEEEEcCcc
Q 030254 129 QGQFWLKQEHIMGRAVGFLPYVG 151 (180)
Q Consensus 129 ~~~~~V~~~~IiG~v~~~iP~~G 151 (180)
.. ...-+|+|+|+..+...+
T Consensus 181 ~~---~~~~~IiG~Vv~~~r~~~ 200 (202)
T 1jhf_A 181 LR---QQSFTIEGLAVGVIRNGD 200 (202)
T ss_dssp TT---TSCEEEEEEEEEEEEC--
T ss_pred CC---CCceEEEEEEEEEEEccc
Confidence 00 123579999998765443
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.86 E-value=2.2e-08 Score=79.26 Aligned_cols=83 Identities=22% Similarity=0.411 Sum_probs=63.3
Q ss_pred eEEEcCCCc-cccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhc
Q 030254 50 VVVVLSESM-EPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYA 128 (180)
Q Consensus 50 ~~~V~~~SM-~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~ 128 (180)
.+.|.|+|| +|++.+||++++++ ..+++.|||+++..++ ...+||+.... + .+++..||...++ ..+
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~-~~~~~~G~ivv~~~~~--~~~vKr~~~~~-~------~~~L~~~N~~y~~-i~i- 178 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRR-QDWAQNGDIVAAMVDG--EVTLAKFYQRG-D------TVELRPANREMSS-MFF- 178 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEE-CSCCCTTCEEEEEETT--EEEEEEEEEET-T------EEEEECSCTTSCC-EEE-
T ss_pred EEEEeCCCcCCCCCCCCCEEEEec-cCcCCCCCEEEEEECC--cEEEEEEEEEC-C------EEEEEECCCCCCC-EEe-
Confidence 478999999 69999999999998 5678999999999875 47999997642 2 6889999864332 211
Q ss_pred cCCceeccceEeeEEEEEEc
Q 030254 129 QGQFWLKQEHIMGRAVGFLP 148 (180)
Q Consensus 129 ~~~~~V~~~~IiG~v~~~iP 148 (180)
+-..-.|+|+|++.+.
T Consensus 179 ----~~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 179 ----RAEKVKILGKVVGVFR 194 (196)
T ss_dssp ----EGGGCEEEEEEEEEEE
T ss_pred ----cCCCEEEEEEEEEEEE
Confidence 1134589999987653
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.84 E-value=8.4e-09 Score=82.95 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=61.6
Q ss_pred eEEEcCCCcc------ccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254 50 VVVVLSESME------PGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD 123 (180)
Q Consensus 50 ~~~V~~~SM~------P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D 123 (180)
.+.|.|+||+ |+|++||+|++++ ..+++.||++++..+++ ...+||+...+ + .+++..||....+
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~-~~~~~~g~ivv~~~~~~-~~~vKrl~~~~-~------~~~L~s~N~~y~~ 212 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDP-EQAVEPGDFCIARLGGD-EFTFKKLIRGS-G------QVFLQPLNPQYPM 212 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECC-SSCCCTTSEEEEESTTT-CCCCEEEECCS-S------SCEEECSSTTSCC
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECC-CCCCCCCcEEEEEECCC-eEEEEEEEEcC-C------cEEEEeCCCCCCC
Confidence 3689999999 9999999999998 45799999999988543 47999998733 2 4668899854332
Q ss_pred hhhhccCCceeccceEeeEEEEEE
Q 030254 124 RMLYAQGQFWLKQEHIMGRAVGFL 147 (180)
Q Consensus 124 ~~~y~~~~~~V~~~~IiG~v~~~i 147 (180)
... . ..-.|+|+|+..+
T Consensus 213 -~~~-----~-~~~~IiG~Vv~~~ 229 (236)
T 3bdn_A 213 -IPC-----N-ESCSVVGKVIASQ 229 (236)
T ss_dssp -BC--------CCCEEEEEEEECC
T ss_pred -eec-----C-CCcEEEEEEEEEE
Confidence 211 1 4468999998754
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.25 E-value=0.001 Score=51.18 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCCccccCcCCCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcchhhhccCCcee
Q 030254 55 SESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDDRMLYAQGQFWL 134 (180)
Q Consensus 55 ~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D~~~y~~~~~~V 134 (180)
+++|.+.-++||+|++++. ++..|+|+++..++ ...+||+...+++ .+.+..||. +... ..
T Consensus 112 ~~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~------~i~L~s~N~----~~~i-----~~ 172 (189)
T 2fjr_A 112 LTDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR------KLHVAGGKV----PFEC-----GI 172 (189)
T ss_dssp CSSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT------EEEEESSSS----CEEE-----ET
T ss_pred CCCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC------EEEEEeCCC----CeEe-----cc
Confidence 3466666689999999984 68889999999875 4799999886543 688999985 1111 01
Q ss_pred ccceEeeEEEEEE
Q 030254 135 KQEHIMGRAVGFL 147 (180)
Q Consensus 135 ~~~~IiG~v~~~i 147 (180)
..-.|+|+|+..+
T Consensus 173 ~~i~IiG~Vv~~~ 185 (189)
T 2fjr_A 173 DDIKTLGRVVGVY 185 (189)
T ss_dssp TSSEEEEEEEEEE
T ss_pred cceEEEEEEEEEE
Confidence 3457999998765
No 9
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=70.07 E-value=9.2 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCCCCcCcEEEEEeCCCCcCEEEE
Q 030254 74 KDPIRTGEIVVFNIQGRDIPIVHR 97 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~~~~ihR 97 (180)
.++++.|+.+.|+..++...+.||
T Consensus 54 ls~l~~G~~~~v~~~g~pv~i~rr 77 (187)
T 2qjy_C 54 VSSVEPGVQLTVKFLGKPIFIRRR 77 (187)
T ss_dssp CTTCCTTEEEEEEETTEEEEEEEC
T ss_pred HHHCCCCCeEEEEECCEEEEEEEC
Confidence 688999999999988775445554
No 10
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=67.11 E-value=15 Score=28.22 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCCCcCcEEEEEeCCCCcCEEEE
Q 030254 65 GDILFLQMSKDPIRTGEIVVFNIQGRDIPIVHR 97 (180)
Q Consensus 65 GD~v~v~~~~~~~~~GDIVvf~~~~~~~~~ihR 97 (180)
..-+-++ .+++++|+.+++...++...++||
T Consensus 61 ~~~v~V~--~s~l~~G~~~~v~~~g~pv~v~r~ 91 (185)
T 3cx5_E 61 MAKVEVN--LAAIPLGKNVVVKWQGKPVFIRHR 91 (185)
T ss_dssp CCCEEEE--GGGCCTTCEEEEEETTEEEEEEEC
T ss_pred cCcEEEE--HHHCCCCCeEEEEECCeEEEEEEC
Confidence 3445553 577889999999887765444444
No 11
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=60.32 E-value=3.7 Score=27.70 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=10.3
Q ss_pred CCCCCcCcEEEEEeC
Q 030254 74 KDPIRTGEIVVFNIQ 88 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~ 88 (180)
.-.+.+||.|.+...
T Consensus 51 ~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 51 YIRILPEDRVVVELS 65 (79)
T ss_dssp TCCCCTTCEEEEEEE
T ss_pred CccCCCCCEEEEEEC
Confidence 345778888887654
No 12
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=50.72 E-value=29 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=22.7
Q ss_pred ccccCcCCCEEEEEe---cCCCCCcCcEEEEEeCCC-CcCEEEEEEEeccc
Q 030254 58 MEPGFQRGDILFLQM---SKDPIRTGEIVVFNIQGR-DIPIVHRVIEVHEQ 104 (180)
Q Consensus 58 M~P~l~~GD~v~v~~---~~~~~~~GDIVvf~~~~~-~~~~ihRVi~~~~d 104 (180)
.+|....+++.+-+. ....++.||-|.++.++. +.+++.||..+-.+
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~ 55 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED 55 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEEC
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc
Confidence 346666666665543 346789999999887653 35789999988654
No 13
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=47.61 E-value=7.8 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=14.1
Q ss_pred CcCCCEEEEEe-----cCCCCCcCcEEEEEeC
Q 030254 62 FQRGDILFLQM-----SKDPIRTGEIVVFNIQ 88 (180)
Q Consensus 62 l~~GD~v~v~~-----~~~~~~~GDIVvf~~~ 88 (180)
+.+|..+++.- ..-.+.+||.|+....
T Consensus 39 l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 39 CLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp EETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred ECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 34555555542 1234667777776543
No 14
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=46.30 E-value=41 Score=22.69 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=13.6
Q ss_pred EEecCCCCCcCcEEEEEe
Q 030254 70 LQMSKDPIRTGEIVVFNI 87 (180)
Q Consensus 70 v~~~~~~~~~GDIVvf~~ 87 (180)
++++.+++++||++.|..
T Consensus 31 iR~nDr~~~vGD~l~l~E 48 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILEE 48 (83)
T ss_dssp EEECCSCCCTTCEEEEEE
T ss_pred EEecccCCCCCCEEEEEE
Confidence 344557799999999964
No 15
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.89 E-value=15 Score=26.18 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=26.7
Q ss_pred EcCCCccc-cCcCCCEEEEEe-----cCCCCCcCcEEEEEeCCCCcCEEEEEEEec
Q 030254 53 VLSESMEP-GFQRGDILFLQM-----SKDPIRTGEIVVFNIQGRDIPIVHRVIEVH 102 (180)
Q Consensus 53 V~~~SM~P-~l~~GD~v~v~~-----~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~ 102 (180)
..|+.|.- .+.+|..+++.- ..-.+.+||.|+......+...-.||+...
T Consensus 24 ~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 24 TPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp CCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEEC
T ss_pred eCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEe
Confidence 44454443 345677777653 223477888888875432213344555443
No 16
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=38.91 E-value=77 Score=20.45 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=30.9
Q ss_pred cCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEec
Q 030254 73 SKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKG 116 (180)
Q Consensus 73 ~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~G 116 (180)
+....+.||.|.-+-+|+..+|=-||..+... ++ .|.++-
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~s~--~~--~Y~V~f 45 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYDDA--SH--LYTVKY 45 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEETT--TT--EEEEEE
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEeccC--Cc--eEEEEe
Confidence 35678899999999998888999999999843 23 455554
No 17
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=36.88 E-value=40 Score=25.11 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=10.1
Q ss_pred cCCCEEEEEecCCCCCcCcEE
Q 030254 63 QRGDILFLQMSKDPIRTGEIV 83 (180)
Q Consensus 63 ~~GD~v~v~~~~~~~~~GDIV 83 (180)
.+||.|+|.....+...|+|+
T Consensus 71 ~~GD~VlVe~~~yd~~KG~Ii 91 (143)
T 1d7q_A 71 NTSDIILVGLRDYQDNKADVI 91 (143)
T ss_dssp CTTCEEEEECSSSSSSCCEEE
T ss_pred cCCCEEEEeeccCCCCeEEEE
Confidence 455555555433334445544
No 18
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=32.62 E-value=1e+02 Score=19.96 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=30.8
Q ss_pred cCCCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEecc
Q 030254 73 SKDPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGD 117 (180)
Q Consensus 73 ~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GD 117 (180)
+....+.||.|.-+-+|...+|=-||..+... +..|.++--
T Consensus 9 p~~~f~vgd~VmaRW~Gd~~yYparItSits~----~~~Y~VkfK 49 (68)
T 2dig_A 9 PSRKFADGEVVRGRWPGSSLYYEVEILSHDST----SQLYTVKYK 49 (68)
T ss_dssp CCCSSCSSCEEEEECTTTCCEEEEEEEEEETT----TTEEEEECT
T ss_pred CceEeecCCEEEEEccCCccceEEEEEEeccC----CceEEEEec
Confidence 34668899999999888778899999999843 235666543
No 19
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=31.63 E-value=21 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=20.6
Q ss_pred cCcCCCEEEEEec--CCCCCcCcEEEEEeCCC
Q 030254 61 GFQRGDILFLQMS--KDPIRTGEIVVFNIQGR 90 (180)
Q Consensus 61 ~l~~GD~v~v~~~--~~~~~~GDIVvf~~~~~ 90 (180)
+|++||+++.-.+ ...++.||.|.....+-
T Consensus 183 tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~gl 214 (221)
T 3s52_A 183 TLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGK 214 (221)
T ss_dssp CBCTTCEEECCCCSCCEEECTTCEEEEEETTE
T ss_pred CcCCCCEEEeCCCCcceecCCCCEEEEEEeCe
Confidence 6888888877641 23478888887776543
No 20
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=30.40 E-value=61 Score=26.64 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCCCCcCEEEEEE
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQGRDIPIVHRVI 99 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~~~~ihRVi 99 (180)
+|++||+++.-. ....+++||.|.....+-. .+..+|.
T Consensus 247 tL~pGDvI~TGTP~Gvg~l~~GD~v~v~iegiG-~L~n~v~ 286 (288)
T 4dbf_A 247 TLLPGDVIATGSPAGTEAMVDGDYIEIEIPGIG-KLGNPVV 286 (288)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CcCCCCEEEcCCCCCCeecCCCCEEEEEECCcE-EEEEEEE
Confidence 788999998865 2346899999988876542 3444443
No 21
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.91 E-value=47 Score=22.48 Aligned_cols=18 Identities=22% Similarity=-0.031 Sum_probs=12.6
Q ss_pred CCCccccCcCCCEEEEEe
Q 030254 55 SESMEPGFQRGDILFLQM 72 (180)
Q Consensus 55 ~~SM~P~l~~GD~v~v~~ 72 (180)
++|-.+.+..|+.|.+..
T Consensus 3 ~~~~~~~~~vG~kv~v~~ 20 (87)
T 2eko_A 3 SGSSGGEIIEGCRLPVLR 20 (87)
T ss_dssp CCCSSCSCCTTCEEEBCE
T ss_pred cccccccccCCCEEEEEE
Confidence 456667778888777754
No 22
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=29.83 E-value=42 Score=23.55 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCCCCcCcEEEEEeCCCCcCEEEEEEEe
Q 030254 74 KDPIRTGEIVVFNIQGRDIPIVHRVIEV 101 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~~~~ihRVi~~ 101 (180)
..++++||+|.+.... +.|=-|-+
T Consensus 5 ~~ep~pGDlI~~~r~~----Y~H~gIYv 28 (125)
T 2lkt_A 5 HQEPKPGDLIEIFRLG----YEHWALYI 28 (125)
T ss_dssp SCCCCTTCEEEEECSS----SCEEEEEE
T ss_pred CCCCCCCCEEEEeCCC----ccEEEEEe
Confidence 5678888888776542 34554444
No 23
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=28.78 E-value=43 Score=25.41 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCccccCcCCCEEEEEe--cCCCCCcCcEEEEEeCCCC-----cCEEEEEEE
Q 030254 56 ESMEPGFQRGDILFLQM--SKDPIRTGEIVVFNIQGRD-----IPIVHRVIE 100 (180)
Q Consensus 56 ~SM~P~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~-----~~~ihRVi~ 100 (180)
.=|+--++.|..+++.+ ....+++||.|+|.+.... ..-+.+|+.
T Consensus 36 ey~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 36 RFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVL 87 (161)
T ss_dssp STTHHHHHHSCEEEEESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEE
T ss_pred HHHHHHHhcCceEEEeccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEEe
Confidence 33443445898888876 3458999999999876432 357788886
No 24
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=27.49 E-value=75 Score=25.55 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=27.3
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCCCCcCEEEEEEE
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQGRDIPIVHRVIE 100 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~~~~ihRVi~ 100 (180)
+|++||+++.-. ....++.||.+.....+-. .+..+|..
T Consensus 218 tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~glG-~l~~~v~~ 258 (264)
T 2dfu_A 218 TLEPLDVVLTGTPEGVGALRPGDRLEVAVEGVG-TLFTLIGP 258 (264)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEEE
T ss_pred CcCCCCEEEeCCCCCccccCCCCEEEEEEeCcE-EEEEEEEe
Confidence 788999888754 2345899999988877542 35556654
No 25
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=27.39 E-value=26 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=16.8
Q ss_pred CCCCCcCcEEEEEeCCCCcCEEEE
Q 030254 74 KDPIRTGEIVVFNIQGRDIPIVHR 97 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~~~~ihR 97 (180)
.+++++|+.+.|+..++...++||
T Consensus 78 ls~l~~G~~~~v~~~G~pV~V~r~ 101 (196)
T 1pp9_E 78 LSDIPEGKNMAFKWRGKPLFVRHR 101 (196)
T ss_dssp GGGSCTTCEEEEEETTEEEEEEEC
T ss_pred HHHCCCCCeEEEEECCEEEEEEEC
Confidence 467888998888877765444444
No 26
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=27.09 E-value=52 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=22.8
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCCC
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQGR 90 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~ 90 (180)
+|++||+|+.-. ....+++||.+.....+-
T Consensus 222 tL~~GdvI~TGT~~g~~~l~~GD~v~~~i~gl 253 (270)
T 2wqt_A 222 PLRTGDIILTGALGPMVAVNAGDRFEAHIEGI 253 (270)
T ss_dssp CBCTTCEEEEEESSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCCeeCCCCCEEEEEEcCC
Confidence 688999998865 334688999988877654
No 27
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=27.06 E-value=45 Score=21.34 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=10.7
Q ss_pred CCCCCcCcEEEEEeC
Q 030254 74 KDPIRTGEIVVFNIQ 88 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~ 88 (180)
.-.+.+||.|.+...
T Consensus 44 ~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 44 YIRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCCTTCEEEEECC
T ss_pred CcCCCCCCEEEEEEE
Confidence 445778888888754
No 28
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=26.07 E-value=98 Score=22.15 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCCCcCcEEEEEeCCCCcCEEEEEEEecccccCCeeEEEEeccCCCCcc
Q 030254 75 DPIRTGEIVVFNIQGRDIPIVHRVIEVHEQRQSGEVRILTKGDNNDVDD 123 (180)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ihRVi~~~~d~~~g~~~~~t~GDnn~~~D 123 (180)
.+++.||-|.-++.+. .++=-+|+++... ..|.+.-|.++.+|
T Consensus 4 ~~v~vGq~V~akh~ng-ryy~~~V~~~~~~-----~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 4 QSITAGQKVISKHKNG-RFYQCEVVRLTTE-----TFYEVNFDDGSFSD 46 (118)
T ss_dssp SCCCTTCEEEEECTTS-SEEEEEEEEEEEE-----EEEEEEETTSCEEE
T ss_pred ceeccCCEEEEECCCC-CEEeEEEEEEeeE-----EEEEEEcCCCCccC
Confidence 5678888888776654 5778888888644 36777766655443
No 29
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=25.65 E-value=71 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=25.1
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCCCCcCEEEEEE
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQGRDIPIVHRVI 99 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~~~~ihRVi 99 (180)
+|++||+++.-. ....++.||.+.....+-. .+..+|.
T Consensus 204 tL~pGDvI~TGTp~gvg~l~~GD~v~~~i~glG-~l~~~v~ 243 (246)
T 1wzo_A 204 TLEPYDVLLTGTPKGISQVRPGDVMRLEIEGLG-ALENPIE 243 (246)
T ss_dssp CBCTTCEEECCCCCCSCEECTTCEEEEEETTSC-EEEEEEE
T ss_pred CcCCCCEEEeCCCCCceECCCCCEEEEEEcCcE-EEEEEEE
Confidence 788888887754 2234788888888776542 3455554
No 30
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=25.16 E-value=51 Score=22.33 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=14.7
Q ss_pred CCCCCcCcEEEEEeCCCC
Q 030254 74 KDPIRTGEIVVFNIQGRD 91 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~ 91 (180)
..+++.||+++|+..+..
T Consensus 75 ~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 75 DNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHTCCTTCEEEEEECSSS
T ss_pred HcCCCCCCEEEEEEcCCC
Confidence 366999999999987654
No 31
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=23.69 E-value=62 Score=26.24 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=24.4
Q ss_pred cCcCCCEEEEEec--CCCCCcCcEEEEEeCCCCcCEEEEEE
Q 030254 61 GFQRGDILFLQMS--KDPIRTGEIVVFNIQGRDIPIVHRVI 99 (180)
Q Consensus 61 ~l~~GD~v~v~~~--~~~~~~GDIVvf~~~~~~~~~ihRVi 99 (180)
+|++||+|+.-.+ ...+++||.|.....+-. .+..+|.
T Consensus 222 tL~pGDvI~TGTp~Gvg~l~~GD~v~v~i~giG-~l~n~v~ 261 (265)
T 3rr6_A 222 TLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIG-TLSNPVV 261 (265)
T ss_dssp CBCTTCEEECCCCSCCEECCTTCEEEEEETTTE-EEEEEEE
T ss_pred CcCCCCEEEeCCCCCceeCCCCCEEEEEECCcE-EEEEEEE
Confidence 7888888877542 235788888887776542 2444443
No 32
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.15 E-value=1.4e+02 Score=21.41 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=25.4
Q ss_pred EEEcCCCccccCcCCCEEEEEe----cCCCCCcCcEE
Q 030254 51 VVVLSESMEPGFQRGDILFLQM----SKDPIRTGEIV 83 (180)
Q Consensus 51 ~~V~~~SM~P~l~~GD~v~v~~----~~~~~~~GDIV 83 (180)
+.|.++|-...-..||.+.+.- +...+++||++
T Consensus 22 I~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~ 58 (121)
T 3bbo_M 22 IRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVI 58 (121)
T ss_dssp EEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEE
T ss_pred EEEcCCCCccccccCcEEEEEEEEccCCCccccCcEE
Confidence 5688888888889999987752 45668888865
No 33
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=22.95 E-value=46 Score=24.17 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=11.8
Q ss_pred CCCCCcCcEEEEEeC
Q 030254 74 KDPIRTGEIVVFNIQ 88 (180)
Q Consensus 74 ~~~~~~GDIVvf~~~ 88 (180)
.+++++||+|.|+..
T Consensus 65 ~~~l~pGDLvFf~~~ 79 (135)
T 2k1g_A 65 RSNLRTGDLVLFRAG 79 (135)
T ss_dssp GGGCCTTEEEEEEET
T ss_pred HHHccCCcEEEECCC
Confidence 467888999888764
No 34
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=22.24 E-value=98 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=24.9
Q ss_pred cCcCCCEEEEEe---c--CCCCCcCcEEEEEeCCCCcCEEEEEEE
Q 030254 61 GFQRGDILFLQM---S--KDPIRTGEIVVFNIQGRDIPIVHRVIE 100 (180)
Q Consensus 61 ~l~~GD~v~v~~---~--~~~~~~GDIVvf~~~~~~~~~ihRVi~ 100 (180)
+|++||+++.-. + ...++.||+|.....+-. .+..+|..
T Consensus 245 tL~pGDvI~TGTg~~p~~~~~l~~GD~v~~~i~glG-~l~n~v~~ 288 (293)
T 2q18_X 245 PIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIG-TLITPVKK 288 (293)
T ss_dssp CCCTTEEEECCCSCCCCTTCCCCTTCEEEEEETTTE-EEEEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCcccCCCCEEEEEEcCcE-EEEEEEEe
Confidence 677888887643 2 245788888888776542 35555543
No 35
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=22.06 E-value=1.5e+02 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=25.2
Q ss_pred EEEcCCCccccCcCCCEEEEEe----cCCCCCcCcEE
Q 030254 51 VVVLSESMEPGFQRGDILFLQM----SKDPIRTGEIV 83 (180)
Q Consensus 51 ~~V~~~SM~P~l~~GD~v~v~~----~~~~~~~GDIV 83 (180)
+.|.|+|=...-..||.+.+.- +...++.||++
T Consensus 22 I~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~ 58 (122)
T 3v2d_O 22 IRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVV 58 (122)
T ss_dssp EEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEE
T ss_pred EEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEE
Confidence 5688888888889999987752 45667888874
No 36
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=21.84 E-value=62 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=20.9
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCCCCcCEEEEEE
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQGRDIPIVHRVI 99 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~~~~~~ihRVi 99 (180)
+|++||+|+.-. ....++.||.+.....+-. .+..+|.
T Consensus 182 tL~~GDvI~TGTp~Gvg~l~~Gd~v~~~i~glG-~l~~~v~ 221 (225)
T 1saw_A 182 TLEEGDIILTGTPKGVGPVKENDEIEAGIHGLV-SMTFKVE 221 (225)
T ss_dssp CBCTTCEEECCCCSCCEEECTTCEEEEEETTTE-EEEEEEE
T ss_pred CcCCCCEEEcCCCCCceeCCCCCEEEEEECCcE-EEEEEEE
Confidence 567777766643 1224677777766665432 2444443
No 37
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=21.66 E-value=52 Score=23.58 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=11.8
Q ss_pred cCCCCCcCcEEEEEeC
Q 030254 73 SKDPIRTGEIVVFNIQ 88 (180)
Q Consensus 73 ~~~~~~~GDIVvf~~~ 88 (180)
+.+++++||+|.|+..
T Consensus 64 ~~~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 64 SRSNLRTGDLVLFRAG 79 (136)
T ss_dssp CTTTCCTTEEEEEECS
T ss_pred chHhCCCCCEEEECCC
Confidence 3567888888888764
No 38
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=21.45 E-value=39 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=19.5
Q ss_pred cCcCCCEEEEEe--cCCCCCcCcEEEEEeCC
Q 030254 61 GFQRGDILFLQM--SKDPIRTGEIVVFNIQG 89 (180)
Q Consensus 61 ~l~~GD~v~v~~--~~~~~~~GDIVvf~~~~ 89 (180)
+|++||+|+.-. ....+++||.+.....+
T Consensus 228 tL~~GDvI~TGT~~g~~~l~~GD~v~~~i~g 258 (267)
T 2eb4_A 228 QLEAGQIILGGSFTRPVPARKGDTFHVDYGN 258 (267)
T ss_dssp CBCTTCEEECCCSSCCEECCTTCEEEEECGG
T ss_pred CCCCCCEEECCCCCCCEECCCCCEEEEEEcC
Confidence 677888877754 23457788887766553
No 39
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=21.07 E-value=42 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=7.4
Q ss_pred CCCCcCcEEEEEe
Q 030254 75 DPIRTGEIVVFNI 87 (180)
Q Consensus 75 ~~~~~GDIVvf~~ 87 (180)
.++++||+|.|+.
T Consensus 3 ~~l~~GDlvf~~~ 15 (186)
T 2if6_A 3 WQPQTGDIIFQIS 15 (186)
T ss_dssp CCCCTTCEEEECC
T ss_pred ccCCCCCEEEEEc
Confidence 4456666666554
No 40
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=20.62 E-value=1.7e+02 Score=21.07 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=25.1
Q ss_pred EEEcCCCccccCcCCCEEEEEe----cCCCCCcCcEE
Q 030254 51 VVVLSESMEPGFQRGDILFLQM----SKDPIRTGEIV 83 (180)
Q Consensus 51 ~~V~~~SM~P~l~~GD~v~v~~----~~~~~~~GDIV 83 (180)
+.|.++|=.+.-..||.+.+.- +...++.||++
T Consensus 22 I~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~ 58 (122)
T 3r8s_K 22 IKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVL 58 (122)
T ss_dssp EEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEE
T ss_pred EEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEE
Confidence 5688888888889999987752 45667788865
No 41
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.30 E-value=73 Score=22.54 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=28.7
Q ss_pred EEEcCCCcccc-CcCCCEEEEEe-----cCCCCCcCcEEEEEeCCCCcCEEEEEEEec
Q 030254 51 VVVLSESMEPG-FQRGDILFLQM-----SKDPIRTGEIVVFNIQGRDIPIVHRVIEVH 102 (180)
Q Consensus 51 ~~V~~~SM~P~-l~~GD~v~v~~-----~~~~~~~GDIVvf~~~~~~~~~ihRVi~~~ 102 (180)
+...|++|.=. +.+|..++..- ..-.+.+||.|.+.....+ ..-.||+.+.
T Consensus 39 i~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~-~~kG~I~~~~ 95 (117)
T 2oqk_A 39 QRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQ-DSKGDIILKY 95 (117)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTC-TTEEEEEEEC
T ss_pred EEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCC-CCeEEEEEEe
Confidence 44555556554 45676666653 1345679999999865221 1234555544
No 42
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=20.22 E-value=49 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=24.6
Q ss_pred EEEcCCCccccCcCCCEEEEEecCCCCCcCcEEEEEeC
Q 030254 51 VVVLSESMEPGFQRGDILFLQMSKDPIRTGEIVVFNIQ 88 (180)
Q Consensus 51 ~~V~~~SM~P~l~~GD~v~v~~~~~~~~~GDIVvf~~~ 88 (180)
+.+..+|...|+-+|..+--. ....++.||+|.+-.+
T Consensus 60 ~~l~D~S~NGt~vng~~l~~~-~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 60 VTLEDTSTSGTVINKLKVVKK-QTCPLQTGDVIYLVYR 96 (116)
T ss_dssp EEEEECSSSCCCCCCCCCCCS-SCCCCCTTCEEEEECC
T ss_pred EEEEECCcCCcEECCEEcCCC-CcEECCCCCEEEEecc
Confidence 334448888888888754211 2467888999888754
Done!