BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030255
MAKSLTKTPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLCNKLRTLTLSSSRRLLFQSH
APIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAAPSLCSFRLPLSFIQV
RHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKV

High Scoring Gene Products

Symbol, full name Information P value
AT5G45590 protein from Arabidopsis thaliana 2.2e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030255
        (180 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2157151 - symbol:AT5G45590 species:3702 "Arabi...   126  2.2e-12   2


>TAIR|locus:2157151 [details] [associations]
            symbol:AT5G45590 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] InterPro:IPR021137
            Pfam:PF01632 EMBL:CP002688 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 EMBL:AY087943 EMBL:BT005062 EMBL:AK117667
            IPI:IPI00525058 RefSeq:NP_568647.1 UniGene:At.43569
            ProteinModelPortal:Q8LAA7 SMR:Q8LAA7 STRING:Q8LAA7 PaxDb:Q8LAA7
            PRIDE:Q8LAA7 EnsemblPlants:AT5G45590.1 GeneID:834597
            KEGG:ath:AT5G45590 TAIR:At5g45590 eggNOG:NOG286674
            InParanoid:Q8LAA7 OMA:FANSTKW PhylomeDB:Q8LAA7
            ProtClustDB:CLSN2917734 ArrayExpress:Q8LAA7 Genevestigator:Q8LAA7
            Uniprot:Q8LAA7
        Length = 173

 Score = 126 (49.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 26/71 (36%), Positives = 38/71 (53%)

Query:   113 LPLSFIQVRHVSSRDR----KKRRXXXXXXXXXXXXXXXXXXXXXXXRFRTMNDGQVRRW 168
             +P  F+QVR+++S+++    KK+                        RF+ +NDG +RRW
Sbjct:    74 VPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFYSSFKDRFKPLNDGTIRRW 133

Query:   169 HEGKRHNAHLK 179
              EGKRHNAHLK
Sbjct:   134 KEGKRHNAHLK 144

 Score = 52 (23.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query:    37 MQRLCNKXXXXXXXXXXXXXFQSHAPIHRPFHSAPSSKWRLS 78
             MQR C K             F   +P HR  H +PS    L+
Sbjct:     1 MQRFCTKLRSISLQSNRNLSFYGASP-HRLIHHSPSPSRHLT 41


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.133   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       122   0.00091  102 3  11 22  0.43    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  135 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.61u 0.16s 9.77t   Elapsed:  00:00:00
  Total cpu time:  9.61u 0.16s 9.77t   Elapsed:  00:00:00
  Start:  Fri May 10 16:15:52 2013   End:  Fri May 10 16:15:52 2013

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