BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030255
(180 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224071431|ref|XP_002303456.1| predicted protein [Populus trichocarpa]
gi|222840888|gb|EEE78435.1| predicted protein [Populus trichocarpa]
Length = 167
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 99/146 (67%), Gaps = 11/146 (7%)
Query: 37 MQRLCNKLRTL-TLSSSRRLLFQSHAPIHRPFH-SAPSSKWRLSP-LFNYPSSSSSHITR 93
MQRLC KLR+L ++SSS RLL HR H +A S KW L+ L N SS +
Sbjct: 1 MQRLCTKLRSLASVSSSHRLLHPPPQSYHRHLHFAAASRKWNLNGSLLNTSSSLPIQL-- 58
Query: 94 CCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSY 153
PS+AA S +LP S +QVRHVSSR+RKKRRKP+TP TSKVKKIKMK+YSSY
Sbjct: 59 ------PSVAAMSSSRLSQLPHSLVQVRHVSSRERKKRRKPMTPRTSKVKKIKMKAYSSY 112
Query: 154 KSRFRTMNDGQVRRWHEGKRHNAHLK 179
K RFRTMNDG +RRW EGK HNAH K
Sbjct: 113 KERFRTMNDGTIRRWREGKNHNAHSK 138
>gi|440583722|emb|CCH47224.1| similar to 50S ribosomal protein L35 [Lupinus angustifolius]
Length = 196
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 91/150 (60%), Gaps = 23/150 (15%)
Query: 37 MQRLCNKLRTLTLSSSRRLL-------FQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSS 89
MQR KLR+ ++ SR+ L F HAP HS S+ P+FN+ SS S
Sbjct: 1 MQRCATKLRSFAVNYSRQSLPTPSPRRFFHHAPPQPFIHSLASTNLISRPIFNF-SSFSP 59
Query: 90 HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKS 149
R +P+ L +QVRHVSSR+RKKRRKP+TPVTSK+KK KMKS
Sbjct: 60 QSFRPSPFPTSLL---------------VQVRHVSSRERKKRRKPMTPVTSKLKKTKMKS 104
Query: 150 YSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
YSS+K RFR MNDG +RRW EGKRHNAHLK
Sbjct: 105 YSSFKLRFRVMNDGNIRRWKEGKRHNAHLK 134
>gi|224138324|ref|XP_002326574.1| predicted protein [Populus trichocarpa]
gi|222833896|gb|EEE72373.1| predicted protein [Populus trichocarpa]
Length = 123
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 57/65 (87%)
Query: 115 LSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
L +QVRHVSSR+RKK RKP+TP+TSKVKK KMK+YSSYK RFRTMNDG +RRW EGK H
Sbjct: 30 LQLVQVRHVSSRERKKNRKPMTPLTSKVKKFKMKAYSSYKDRFRTMNDGTIRRWREGKNH 89
Query: 175 NAHLK 179
NAHLK
Sbjct: 90 NAHLK 94
>gi|358248355|ref|NP_001240123.1| uncharacterized protein LOC100814427 [Glycine max]
gi|255647090|gb|ACU24013.1| unknown [Glycine max]
Length = 156
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 86/135 (63%), Gaps = 25/135 (18%)
Query: 45 RTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAA 104
+ L+ SSRRLL H+P +P HSA S +R+S PS SS S+PSPSL
Sbjct: 18 QVLSPPSSRRLLH--HSPPPQPLHSA--SNFRIS----RPSFISSSWPLHASHPSPSL-- 67
Query: 105 APSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQ 164
+QVRH SS++RK RKPV P SKVKK KMKSYSS+KSRFRTMNDG
Sbjct: 68 -------------VQVRHASSKERK--RKPVPPTVSKVKKTKMKSYSSFKSRFRTMNDGN 112
Query: 165 VRRWHEGKRHNAHLK 179
+RRW EGKRHNAHLK
Sbjct: 113 IRRWKEGKRHNAHLK 127
>gi|357484741|ref|XP_003612658.1| 50S ribosomal protein L35 [Medicago truncatula]
gi|355513993|gb|AES95616.1| 50S ribosomal protein L35 [Medicago truncatula]
Length = 157
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 98/150 (65%), Gaps = 30/150 (20%)
Query: 37 MQRLCNKLRTLTLSS----SRRLLFQSHAPIHRPFHSA---PSSKWRLSPLFNYPSSSSS 89
MQRL KLR+L + S SRR L H + +P HSA P S+ PLFN+ S SS
Sbjct: 2 MQRLLPKLRSLAVQSLQPSSRRFL---HHSLPQPLHSASINPISR----PLFNF-SPSSL 53
Query: 90 HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKS 149
H S PSP +PSL +QVRHVSSR+RKK+RKP+TPV SK+KK KMKS
Sbjct: 54 H----KSLPSP---FSPSLV--------LQVRHVSSRERKKKRKPMTPVKSKLKKTKMKS 98
Query: 150 YSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
YSSYKSRFR MNDG RRW EGKRHNAHLK
Sbjct: 99 YSSYKSRFRLMNDGTFRRWREGKRHNAHLK 128
>gi|297791165|ref|XP_002863467.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
gi|297309302|gb|EFH39726.1| structural constituent of ribosome [Arabidopsis lyrata subsp.
lyrata]
Length = 170
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 14/149 (9%)
Query: 37 MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96
MQR C KLR+++L S+R L F AP HR H +P+ L+ + +S T+
Sbjct: 1 MQRFCTKLRSISLQSNRNLSFSGAAP-HRLIHHSPTR--HLTTTLGFANS-----TKWSF 52
Query: 97 YPSPSLA--AAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
P+ ++ S+ S +P F+QVR+++S+++ + +P TP+TSKVKK+K+K Y
Sbjct: 53 LPAAGVSPLNISSMGSTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 112
Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 113 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 141
>gi|18422571|ref|NP_568647.1| Ribosomal protein L35 [Arabidopsis thaliana]
gi|21593524|gb|AAM65491.1| unknown [Arabidopsis thaliana]
gi|26450411|dbj|BAC42320.1| unknown protein [Arabidopsis thaliana]
gi|28827502|gb|AAO50595.1| unknown protein [Arabidopsis thaliana]
gi|332007889|gb|AED95272.1| Ribosomal protein L35 [Arabidopsis thaliana]
Length = 173
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 11/149 (7%)
Query: 37 MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPS-SKWRLSPLFNYPSSSS-SHITRC 94
MQR C KLR+++L S+R L F +P HR H +PS S+ + + +S+ S +
Sbjct: 1 MQRFCTKLRSISLQSNRNLSFYGASP-HRLIHHSPSPSRHLTTTTLGFANSTKWSFVPAA 59
Query: 95 CSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
+PS S+ + +P F+QVR+++S+++ + +P TP+TSKVKK+K+K Y
Sbjct: 60 GVFPS----NVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 115
Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 116 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 144
>gi|10177933|dbj|BAB11198.1| unnamed protein product [Arabidopsis thaliana]
Length = 262
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 11/149 (7%)
Query: 37 MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPS-SKWRLSPLFNYPSSSS-SHITRC 94
MQR C KLR+++L S+R L F +P HR H +PS S+ + + +S+ S +
Sbjct: 1 MQRFCTKLRSISLQSNRNLSFYGASP-HRLIHHSPSPSRHLTTTTLGFANSTKWSFVPAA 59
Query: 95 CSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRR----KPVTPVTSKVKKIKMKSY 150
+PS S+ + +P F+QVR+++S+++ + +P TP+TSKVKK+K+K Y
Sbjct: 60 GVFPS----NVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSKVKKVKIKFY 115
Query: 151 SSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
SS+K RF+ +NDG +RRW EGKRHNAHLK
Sbjct: 116 SSFKDRFKPLNDGTIRRWKEGKRHNAHLK 144
>gi|356531483|ref|XP_003534307.1| PREDICTED: uncharacterized protein LOC100808184 [Glycine max]
Length = 155
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 84/155 (54%), Gaps = 41/155 (26%)
Query: 37 MQRLCNKLRTLTLSS--------SRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSS 88
M R KLR L + S SRRLL H P + HSA N+ SS
Sbjct: 1 MLRSLTKLRCLAVQSRQVLSPPSSRRLLH--HLPPPQSLHSAS----------NFRISSP 48
Query: 89 SHITRCC----SYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKK 144
S I C S PSPSL +QVRH SS++RK RKPV P SKVKK
Sbjct: 49 SFIFSWCPPHASQPSPSL---------------VQVRHASSKERK--RKPVPPTVSKVKK 91
Query: 145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
KMKSYSS+KSRFR MNDG +RRW EGKRHNAHLK
Sbjct: 92 TKMKSYSSFKSRFRAMNDGNIRRWKEGKRHNAHLK 126
>gi|255647366|gb|ACU24149.1| unknown [Glycine max]
Length = 155
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 84/155 (54%), Gaps = 41/155 (26%)
Query: 37 MQRLCNKLRTLTLSS--------SRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSS 88
M R KLR L + S SRRLL H P + HSA N+ SS
Sbjct: 1 MLRSLTKLRCLAVQSRQVLSPPSSRRLLH--HLPPPQSLHSAS----------NFRISSP 48
Query: 89 SHITRCC----SYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKK 144
S I C S PSPSL +QVRH SS++RK RKPV P SKVKK
Sbjct: 49 SFIFSWCPPHASQPSPSL---------------VQVRHASSKERK--RKPVPPTVSKVKK 91
Query: 145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
KMKSYSS+KSRFR MNDG +RRW EGKRHNAHLK
Sbjct: 92 TKMKSYSSFKSRFRAMNDGNIRRWKEGKRHNAHLK 126
>gi|449453326|ref|XP_004144409.1| PREDICTED: uncharacterized protein LOC101219338 [Cucumis sativus]
gi|449500078|ref|XP_004160998.1| PREDICTED: uncharacterized LOC101219338 [Cucumis sativus]
Length = 168
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 91/151 (60%), Gaps = 20/151 (13%)
Query: 37 MQRLCNKLRT--------LTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSS 88
M R C KLR+ L SS R +F S +++P H + S+ LFN +S
Sbjct: 1 MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFS-SNNLNSRSLFN--ASQQ 57
Query: 89 SHITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMK 148
+H SP LAA + S LPLS +QVRHVSSRDR+ +RKP TP TSK+KK K+K
Sbjct: 58 TH--------SP-LAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLK 108
Query: 149 SYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
+YSSYKSRF M DG ++R EGKRHNAH K
Sbjct: 109 AYSSYKSRFWLMKDGSIKRRMEGKRHNAHSK 139
>gi|255557867|ref|XP_002519963.1| conserved hypothetical protein [Ricinus communis]
gi|223541009|gb|EEF42567.1| conserved hypothetical protein [Ricinus communis]
Length = 186
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 93/144 (64%), Gaps = 5/144 (3%)
Query: 37 MQRLCNKLRTLTLSSSRRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96
MQ LC KLR+ S R L S + R HS S PL +S +T S
Sbjct: 1 MQTLCTKLRSFAGQSIRTLPAISLSG--RQLHS---SSQLYQPLIFASASRKWSLTNASS 55
Query: 97 YPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSR 156
+ PS+A L S + S +QVRHVSSR+R+KRRKP+TPV SKVKKIK+KSYSSYKSR
Sbjct: 56 FQFPSVAFQTPLRSSAVFPSLVQVRHVSSRERRKRRKPMTPVISKVKKIKIKSYSSYKSR 115
Query: 157 FRTMNDGQVRRWHEGKRHNAHLKV 180
FRTMNDG +RRW EGKRHNAHLK+
Sbjct: 116 FRTMNDGSIRRWKEGKRHNAHLKI 139
>gi|225463238|ref|XP_002273609.1| PREDICTED: uncharacterized protein LOC100240778 [Vitis vinifera]
Length = 165
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 89/155 (57%), Gaps = 31/155 (20%)
Query: 37 MQRLCNKLRTLTLSSS---------RRLLFQSHAP-IHRPFHSAPSSKWRLSPLFNYPSS 86
MQR C KL +L S RRLL H+P HR SA + PLFN +S
Sbjct: 1 MQRWCAKLGSLATSWQNQPFMAPQWRRLL--HHSPQFHRSLPSASITTSNFVPLFNAAAS 58
Query: 87 SSS--HITRCCSYPSPSLAAAPSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKK 144
SS H R S LPL + VRH SS+D+ KRR P+TPVTSK+KK
Sbjct: 59 SSMAAHFFR----------------SSLLPLYVVPVRHFSSKDKNKRR-PITPVTSKIKK 101
Query: 145 IKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
IKMKSYSS+K RFR MNDG +RRW EGKRHNAHLK
Sbjct: 102 IKMKSYSSFKMRFRVMNDGNIRRWREGKRHNAHLK 136
>gi|12039379|gb|AAG46165.1|AC018727_17 unknown protein [Oryza sativa Japonica Group]
gi|31433700|gb|AAP55179.1| ribosomal protein L35 containing protein, expressed [Oryza sativa
Japonica Group]
gi|125533087|gb|EAY79652.1| hypothetical protein OsI_34796 [Oryza sativa Indica Group]
gi|125575818|gb|EAZ17102.1| hypothetical protein OsJ_32601 [Oryza sativa Japonica Group]
Length = 156
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 80/148 (54%), Gaps = 26/148 (17%)
Query: 37 MQRLCNKLRTLTLSSSRRLLFQS-HAPIHRPF--HSAPSSKWRLSPLFNYPSSSSSHITR 93
M+R C L RRLL S AP HRP H PS + PL P SS H+
Sbjct: 1 MRRWCA---AAGLGLGRRLLSSSVSAPAHRPLPAHLIPSPR----PL---PFSSRHHLL- 49
Query: 94 CCSYPSPSLAAAPSLCSFRLPLSFI--QVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYS 151
+P L PS P+ + QVRH +++DR R P TP TSKVKK K+K S
Sbjct: 50 -----TPPLGLHPSSPP---PMQWQTQQVRHFAAKDRS--RAPRTPTTSKVKKYKIKPPS 99
Query: 152 SYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
S K RFR MNDGQVRRW GKRHNAHLK
Sbjct: 100 SMKFRFRVMNDGQVRRWRAGKRHNAHLK 127
>gi|296083384|emb|CBI23273.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
Query: 113 LPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGK 172
LPL + VRH SS+D+ KRR P+TPVTSK+KKIKMKSYSS+K RFR MNDG +RRW EGK
Sbjct: 51 LPLYVVPVRHFSSKDKNKRR-PITPVTSKIKKIKMKSYSSFKMRFRVMNDGNIRRWREGK 109
Query: 173 RHNAHLK 179
RHNAHLK
Sbjct: 110 RHNAHLK 116
>gi|115483676|ref|NP_001065508.1| Os10g0579500 [Oryza sativa Japonica Group]
gi|113640040|dbj|BAF27345.1| Os10g0579500, partial [Oryza sativa Japonica Group]
Length = 152
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 76/136 (55%), Gaps = 23/136 (16%)
Query: 49 LSSSRRLLFQS-HAPIHRPF--HSAPSSKWRLSPLFNYPSSSSSHITRCCSYPSPSLAAA 105
L RRLL S AP HRP H PS + PL P SS H+ +P L
Sbjct: 6 LGLGRRLLSSSVSAPAHRPLPAHLIPSPR----PL---PFSSRHHLL------TPPLGLH 52
Query: 106 PSLCSFRLPLSFI--QVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDG 163
PS P+ + QVRH +++DR R P TP TSKVKK K+K SS K RFR MNDG
Sbjct: 53 PSSPP---PMQWQTQQVRHFAAKDRS--RAPRTPTTSKVKKYKIKPPSSMKFRFRVMNDG 107
Query: 164 QVRRWHEGKRHNAHLK 179
QVRRW GKRHNAHLK
Sbjct: 108 QVRRWRAGKRHNAHLK 123
>gi|357147607|ref|XP_003574407.1| PREDICTED: uncharacterized protein LOC100844694 [Brachypodium
distachyon]
Length = 162
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 112 RLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEG 171
R P+ +Q+RH + + R R P+TP SKVKK KMK+ SS K RF+T+ DGQ+RRW G
Sbjct: 68 RPPVMAMQLRHYAIKGRS--RAPITPTVSKVKKYKMKAPSSMKFRFKTLKDGQIRRWCAG 125
Query: 172 KRHNAHLK 179
KRHNAHLK
Sbjct: 126 KRHNAHLK 133
>gi|326496939|dbj|BAJ98496.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506240|dbj|BAJ86438.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512512|dbj|BAJ99611.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326522891|dbj|BAJ88491.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 158
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 53 RRLLFQSHAPIHRPFHSAPSSKWRLSPLFNYP-----SSSSSHITRCCSYPSPSLAA--- 104
RR S + R F SAP++ P+ + P S S SH P P + +
Sbjct: 2 RRWCCSSAGGLARRFLSAPTAVHARPPVPSLPFRRDHSHSHSHA------PLPIMGSLFH 55
Query: 105 -APSLCSFRLPLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDG 163
A + R P+ +Q+RH + + R R P TP SKVKK KMK+ SS K RFRTM DG
Sbjct: 56 SAAAAAIVRPPVMAMQLRHYAIKGRS--RAPTTPTISKVKKYKMKAPSSMKFRFRTMKDG 113
Query: 164 QVRRWHEGKRHNAHLK 179
Q+RRW GKRHNAH K
Sbjct: 114 QIRRWRAGKRHNAHQK 129
>gi|294464379|gb|ADE77702.1| unknown [Picea sitchensis]
Length = 167
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 114 PLSFIQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKR 173
PL IQ R ++ KK K ++ SK+KK KMKSYSSYK RFRT+ G +RRW GKR
Sbjct: 76 PLLMIQKR---TKTAKKVVKRLSAPPSKLKKTKMKSYSSYKFRFRTLTSGLIRRWRAGKR 132
Query: 174 HNAHLK 179
HNAH K
Sbjct: 133 HNAHSK 138
>gi|242034929|ref|XP_002464859.1| hypothetical protein SORBIDRAFT_01g027760 [Sorghum bicolor]
gi|241918713|gb|EER91857.1| hypothetical protein SORBIDRAFT_01g027760 [Sorghum bicolor]
Length = 164
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Query: 100 PSLAAAPSLCSFRLPLSF-IQVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFR 158
P++A++P FR P + QVRH + ++R R P+TP SKVKK K+K+ SS K RFR
Sbjct: 61 PAIASSP----FRPPSAHHQQVRHYAKKERS--RAPLTPTKSKVKKYKIKAPSSMKFRFR 114
Query: 159 TMNDGQVRRWHEGKRHNAHLK 179
TM DGQVRRW GKRHNAHLK
Sbjct: 115 TMKDGQVRRWRAGKRHNAHLK 135
>gi|226529664|ref|NP_001149648.1| ribosomal protein L35 containing protein precursor [Zea mays]
gi|195628799|gb|ACG36227.1| ribosomal protein L35 containing protein [Zea mays]
gi|223943669|gb|ACN25918.1| unknown [Zea mays]
gi|414867976|tpg|DAA46533.1| TPA: Ribosomal protein L35 containing protein [Zea mays]
Length = 163
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 119 QVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHL 178
QVRH + ++R R P+TP SKVKK KMK+ SS K RFRTM DGQVRRW GKRHNAHL
Sbjct: 76 QVRHYAKKERS--RAPLTPTKSKVKKYKMKAPSSMKFRFRTMKDGQVRRWRAGKRHNAHL 133
Query: 179 K 179
K
Sbjct: 134 K 134
>gi|414867975|tpg|DAA46532.1| TPA: hypothetical protein ZEAMMB73_280712 [Zea mays]
Length = 62
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 27/33 (81%)
Query: 147 MKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
MK+ SS K RFRTM DGQVRRW GKRHNAHLK
Sbjct: 1 MKAPSSMKFRFRTMKDGQVRRWRAGKRHNAHLK 33
>gi|168010095|ref|XP_001757740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691016|gb|EDQ77380.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 202
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 149 SYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKV 180
+YSSYK RFR M +G+ +RW GK+HNAH K
Sbjct: 110 AYSSYKKRFRGMANGEYKRWRSGKQHNAHSKA 141
>gi|195627172|gb|ACG35416.1| ribosomal protein L35 containing protein [Zea mays]
Length = 153
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 119 QVRHVSSRDRKKRRKPVTPVTSKVKKIKMKSYSSYKSRFRTMNDGQVRRW 168
QVRH + ++R R P+TP SKVKK KMK+ SS K RFRTM DGQVRRW
Sbjct: 76 QVRHYAKKERS--RAPLTPTKSKVKKYKMKAPSSMKFRFRTMKDGQVRRW 123
>gi|145341436|ref|XP_001415815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576038|gb|ABO94107.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 113
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 144 KIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLK 179
K+K+K YSSYK RF+ G++ R +GKRH A K
Sbjct: 48 KVKIKPYSSYKGRFQVTASGKILRKRKGKRHCAFAK 83
>gi|303273562|ref|XP_003056142.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462226|gb|EEH59518.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 186
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 144 KIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNA 176
K K+K YSS+K+RFR G+ R +GKRH A
Sbjct: 121 KTKIKPYSSWKARFRATATGKYARKQKGKRHKA 153
>gi|1209364|gb|AAA96139.1| ORF 1 [Hepatitis E virus]
Length = 1693
Score = 35.4 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 50 SSSRRLL----FQSHAPIHRPFHSAPSSKWRLSPLFNYPSSSSSHITRCCS 96
SSS R++ FQ HAP+ RPFH+ P+ W LF + CCS
Sbjct: 291 SSSARVVPPPYFQPHAPLSRPFHAVPAHIWDRLMLFGATLDDQAF---CCS 338
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,686,680,072
Number of Sequences: 23463169
Number of extensions: 100754140
Number of successful extensions: 257683
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 257601
Number of HSP's gapped (non-prelim): 81
length of query: 180
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 47
effective length of database: 9,238,593,890
effective search space: 434213912830
effective search space used: 434213912830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)