BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030255
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1KSY4|RL35_NEIMF 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpmI PE=3
SV=1
Length = 65
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMK+ SS K RF+ + +G V+R H KRH
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRH 31
>sp|P66274|RL35_NEIMB 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpmI PE=3 SV=1
Length = 65
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMK+ SS K RF+ + +G V+R H KRH
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRH 31
>sp|P66273|RL35_NEIMA 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpmI PE=3 SV=1
Length = 65
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMK+ SS K RF+ + +G V+R H KRH
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRH 31
>sp|Q5F9U2|RL35_NEIG1 50S ribosomal protein L35 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpmI PE=3 SV=1
Length = 65
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMK+ SS K RF+ + +G V+R H KRH
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRH 31
>sp|Q75CA4|DNLI4_ASHGO DNA ligase 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=LIG4 PE=3 SV=1
Length = 981
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 1 MAKSLTKTPKFPRNKETNQRVSFNNKALFDAPSAVEMQRLC----NKLRTLTLSSSRRLL 56
+ K+L K K PRN ET +R+ + +AP V++ C K R + R +
Sbjct: 131 LVKALCKHMKLPRNSETERRLLHWKQ---NAPRGVKLSTFCVEELQKRRREPVVPKRMSI 187
Query: 57 FQSHAPIHRPFHSAPSSKWRL-----SPLFNYPSSSSSHI 91
+ + + + H + KW SP FNY S++
Sbjct: 188 DEVNGMLDKLEHESNVGKWSYISLAESPAFNYCLEHMSYV 227
>sp|A8LLG9|RL35_DINSH 50S ribosomal protein L35 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rpmI PE=3 SV=1
Length = 66
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
KMK+ SS K RF+ G+VR GKRH
Sbjct: 3 KMKTKSSAKKRFKMTATGKVRAGQAGKRHG 32
>sp|O45291|TBX33_CAEEL Putative T-box protein 33 OS=Caenorhabditis elegans GN=tbx-33 PE=4
SV=2
Length = 420
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 60 HAPIHRPFHSAPSSKWR-LSPLFNYPSSSSS-HIT-----RCCSYPSPSLAAAPSLCSF 111
HAP+ P S+PSS + ++P ++ S+ SS ++T + C P PS++ S CSF
Sbjct: 331 HAPLQYPGTSSPSSNFAPMTPSTSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSF 389
>sp|C3MCP8|RL35_RHISN 50S ribosomal protein L35 OS=Rhizobium sp. (strain NGR234) GN=rpmI
PE=3 SV=1
Length = 67
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
KMK+ SS K RF+ G+VR GKRH
Sbjct: 3 KMKTKSSAKKRFKVTATGKVRAAAAGKRHG 32
>sp|A6UF72|RL35_SINMW 50S ribosomal protein L35 OS=Sinorhizobium medicae (strain WSM419)
GN=rpmI PE=3 SV=1
Length = 67
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
KMK+ SS K RF+ G+VR GKRH
Sbjct: 3 KMKTKSSAKKRFKITATGKVRAAAAGKRHG 32
>sp|Q92ST2|RL35_RHIME 50S ribosomal protein L35 OS=Rhizobium meliloti (strain 1021)
GN=rpmI PE=3 SV=1
Length = 67
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
KMK+ SS K RF+ G+VR GKRH
Sbjct: 3 KMKTKSSAKKRFKITATGKVRAAAAGKRHG 32
>sp|Q1GZR9|RL35_METFK 50S ribosomal protein L35 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rpmI PE=3 SV=1
Length = 65
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMK+ SS K RF+ + +G+V+R H RH
Sbjct: 3 KMKTKSSAKKRFKFLGNGKVKRTHSHLRH 31
>sp|Q6A7V2|RL35_PROAC 50S ribosomal protein L35 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rpmI PE=3 SV=1
Length = 68
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH-NAH 177
KMKS+S K RF+ G+V GKRH N H
Sbjct: 3 KMKSHSGTKKRFKVTGSGKVTARKAGKRHLNEH 35
>sp|C0R3S5|RL35_WOLWR 50S ribosomal protein L35 OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rpmI PE=3 SV=1
Length = 68
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 142 VKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
+KKIK+K+ SS K RF G+V GKRH
Sbjct: 1 MKKIKLKTKSSVKKRFHLTAKGKVISTQSGKRHG 34
>sp|Q73GR8|RL35_WOLPM 50S ribosomal protein L35 OS=Wolbachia pipientis wMel GN=rpmI PE=3
SV=1
Length = 68
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 142 VKKIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
+KKIK+K+ SS K RF G+V GKRH
Sbjct: 1 MKKIKLKTKSSVKKRFHLTAKGKVISTQSGKRHG 34
>sp|Q255M2|RL35_CHLFF 50S ribosomal protein L35 OS=Chlamydophila felis (strain Fe/C-56)
GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
>sp|Q822B3|RL35_CHLCV 50S ribosomal protein L35 OS=Chlamydophila caviae (strain GPIC)
GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
>sp|Q5L5A6|RL35_CHLAB 50S ribosomal protein L35 OS=Chlamydophila abortus (strain S26/3)
GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
>sp|A7HPK8|RL35_PARL1 50S ribosomal protein L35 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rpmI PE=3 SV=1
Length = 66
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHN 175
K+K+ S K RF+ G+V+R GKRH
Sbjct: 3 KLKTKSGTKKRFKLTASGKVKRGQTGKRHG 32
>sp|P66267|RL35_CHLTR 50S ribosomal protein L35 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
>sp|Q3KKK5|RL35_CHLTA 50S ribosomal protein L35 OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
>sp|P66268|RL35_CHLMU 50S ribosomal protein L35 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpmI PE=3 SV=1
Length = 64
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRH 174
KMKS S +RF+ GQ++R GKRH
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRH 31
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.127 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,019,866
Number of Sequences: 539616
Number of extensions: 2339163
Number of successful extensions: 6064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6023
Number of HSP's gapped (non-prelim): 58
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)