BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030257
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 2 SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+SLL++ ++N G + PN C + N L+ L+L+NN F GKIP TLSNC L ++ LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
+ SGTIP +G+++KL L L N L+GEIP+EL + LE L L N LT IP
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
TG IP +G +L L LS N SG IP+
Sbjct: 488 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+S L ++ N L GE+P ++ LE+L L N G+IPS LSNC L ISLS
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
+ +G IPK IG + L L L N G IP ELG+ L L L N IP
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+ SL + N GE+P L L L N F+G +P +C L +++LS
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 61 DDFSGTIPKE-IGNVTKLIRLYLRGNQLQGEIPEELGNLAE--LEMLWLQNNFLTRAIPX 117
++FSG +P + + + L L L N+ GE+PE L NL+ L + NNF +P
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 118 XXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
G IP L N S L +L+LS+N LSG IPS
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLD 61
+L + + N +G +PP F + NN F G++P TL + L+ + LS +
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN 353
Query: 62 DFSGTIPKEIGNVTK-LIRLYLRGNQLQGEIPEELGNLAE-----LEMLWLQNNFLTRAI 115
+FSG +P+ + N++ L+ L L N G I L NL + L+ L+LQNN T I
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 116 PXXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
P +G IPS LG+ S L+ L L N L G IP
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 10 TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
T+ G P F N+ S + L + NM G IP + + L ++L +D SG+IP
Sbjct: 616 TSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 70 EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
E+G++ L L L N+L G IP+ + L L + L NN L+ IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
N LS + + ++ G T N + + +S + SG IPKEIG++ L L L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXXXXXXTGGIIPSL 143
N + G IP+E+G+L L +L L +N L G IP
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLD-------------------------GRIPQA 699
Query: 144 LGNQSSLQTLYLSYNQLSGPIP 165
+ + L + LS N LSGPIP
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIP 721
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 7 IRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT 66
I +NN L GE+P + L NL L L NN F G IP+ L +C+ L + L+ + F+GT
Sbjct: 495 ISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 67 IP----KEIGNVTKLI-----RLYLRGNQLQGEIPEELGNLAELEMLWLQN-NFLTRAIP 116
IP K+ G + +Y++ + ++ E GNL E + + + N L+ P
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 117 XXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
GG N S+ L +SYN LSG IP I
Sbjct: 613 CNITSRVY------------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
L+ L + N G + +S C L + +S ++FS IP +G+ + L L + GN+L
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 89 GEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQS 148
G+ + EL++L + +N IP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL---------------------------K 269
Query: 149 SLQTLYLSYNQLSGPIPSFI 168
SLQ L L+ N+ +G IP F+
Sbjct: 270 SLQYLSLAENKFTGEIPDFL 289
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN---NMFHGKIPSTLSNCKRLRNISLS 59
S++ + + N L G +P + ++ LF+ N N G IP + + + L + LS
Sbjct: 633 SMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 60 LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE 93
+ G IP+ + +T L + L N L G IPE
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 2 SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+SLL++ ++N G + PN C + N L+ L+L+NN F GKIP TLSNC L ++ LS
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
+ SGTIP +G+++KL L L N L+GEIP+EL + LE L L N LT IP
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
TG IP +G +L L LS N SG IP+
Sbjct: 485 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+S L ++ N L GE+P ++ LE+L L N G+IPS LSNC L ISLS
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
+ +G IPK IG + L L L N G IP ELG+ L L L N IP
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 3/169 (1%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+ SL + N GE+P L L L N F+G +P +C L +++LS
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 61 DDFSGTIPKE-IGNVTKLIRLYLRGNQLQGEIPEELGNLAE--LEMLWLQNNFLTRAIPX 117
++FSG +P + + + L L L N+ GE+PE L NL+ L + NNF +P
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 118 XXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
G IP L N S L +L+LS+N LSG IPS
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 12/170 (7%)
Query: 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLD 61
+L + + N +G +PP F + NN F G++P TL + L+ + LS +
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN 350
Query: 62 DFSGTIPKEIGNVTK-LIRLYLRGNQLQGEIPEELGNLAE-----LEMLWLQNNFLTRAI 115
+FSG +P+ + N++ L+ L L N G I L NL + L+ L+LQNN T I
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 116 PXXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
P +G IPS LG+ S L+ L L N L G IP
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 10 TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
T+ G P F N+ S + L + NM G IP + + L ++L +D SG+IP
Sbjct: 613 TSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 70 EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
E+G++ L L L N+L G IP+ + L L + L NN L+ IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
N LS + + ++ G T N + + +S + SG IPKEIG++ L L L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXXXXXXTGGIIPSL 143
N + G IP+E+G+L L +L L +N L G IP
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLD-------------------------GRIPQA 696
Query: 144 LGNQSSLQTLYLSYNQLSGPIP 165
+ + L + LS N LSGPIP
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIP 718
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 7 IRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT 66
I +NN L GE+P + L NL L L NN F G IP+ L +C+ L + L+ + F+GT
Sbjct: 492 ISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 67 IP----KEIGNVTKLI-----RLYLRGNQLQGEIPEELGNLAELEMLWLQN-NFLTRAIP 116
IP K+ G + +Y++ + ++ E GNL E + + + N L+ P
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 117 XXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
GG N S+ L +SYN LSG IP I
Sbjct: 610 CNITSRVY------------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
L+ L + N G + +S C L + +S ++FS IP +G+ + L L + GN+L
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 89 GEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQS 148
G+ + EL++L + +N IP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL---------------------------K 266
Query: 149 SLQTLYLSYNQLSGPIPSFI 168
SLQ L L+ N+ +G IP F+
Sbjct: 267 SLQYLSLAENKFTGEIPDFL 286
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN---NMFHGKIPSTLSNCKRLRNISLS 59
S++ + + N L G +P + ++ LF+ N N G IP + + + L + LS
Sbjct: 630 SMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 60 LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE 93
+ G IP+ + +T L + L N L G IPE
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 12 NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
N L G +PP L+ L L++ + G IP LS K L + S + SGT+P I
Sbjct: 87 NNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 72 GNVTKLIRLYLRGNQLQGEIPEELGNLAEL-EMLWLQNNFLTRAIP 116
++ L+ + GN++ G IP+ G+ ++L + + N LT IP
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL-RNISLS 59
+ +L+++ F+ N L G LPP+ + L NL + N G IP + + +L ++++S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 60 LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXX 119
+ +G IP N+ L + L N L+G+ G+ + + L N L A
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK 239
Query: 120 XXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
G +P L L +L +S+N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
NL L L+NN +G +P L+ K L ++++S ++ G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.7 bits (78), Expect = 0.033, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 25 HLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82
HL LESL+L NN KI + LS +L +SL + S +P + +TKL LYL
Sbjct: 129 HLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182
Query: 83 RGNQL 87
N +
Sbjct: 183 SKNHI 187
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
+ +L ++ T+N L LP + L NL L L N P + +L +SL
Sbjct: 84 LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 61 DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRA 114
++ ++PK + +T L L L NQL+ +PE L EL+ L L NN L R
Sbjct: 143 NELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 2/127 (1%)
Query: 54 RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+ + L + S K +TKL LYL N+LQ L LE LW+ +N L +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-Q 98
Query: 114 AIPXXXXXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFS 173
A+P + P + + + L L L YN+L +P + K +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLT 157
Query: 174 LLDNIRF 180
L +R
Sbjct: 158 SLKELRL 164
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 43/110 (39%)
Query: 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
L + + N+ LP L NLE+L++ +N L + L +
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 65 GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
P+ ++TKL L L N+LQ L L+ L L NN L R
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL 87
++ L+L N F +P LSN K L I LS + S + N+T+L+ L L N+L
Sbjct: 32 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 88 QGEIPEELGNLAELEMLWLQNNFLT 112
+ P L L +L L N ++
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
L+ + N ELP N LSNL L L +N +P+ L +C +L+ D+
Sbjct: 247 DFLTRLYLNGNSLTELPAEIKN-LSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF-FDN 303
Query: 63 FSGTIPKEIGNVTKLIRLYLRGNQLQGE 90
T+P E GN+ L L + GN L+ +
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 77 LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112
L RLYL GN L E+P E+ NL+ L +L L +N LT
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 152 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 85 NQL 87
N +
Sbjct: 208 NHI 210
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 85 NQL 87
N +
Sbjct: 186 NHI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 85 NQL 87
N +
Sbjct: 188 NHI 190
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 127 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 182
Query: 85 NQL 87
N +
Sbjct: 183 NHI 185
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 85 NQL 87
N +
Sbjct: 188 NHI 190
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 85 NQL 87
N +
Sbjct: 206 NHI 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 85 NQL 87
N +
Sbjct: 206 NHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 85 NQL 87
N +
Sbjct: 206 NHI 208
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 3/156 (1%)
Query: 26 LSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
L+ LE L L +N P+T RL + L P + L LYL+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXXXXXXTGGIIPSLL 144
N LQ + +L L L+L N ++ ++P + P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 145 GNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF 180
+ L TLYL N LS +P+ L L +R
Sbjct: 198 RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL 232
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 3/177 (1%)
Query: 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSLDDF 63
L+I + ++ + + L+ LE L L +N P+T RL + L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 64 SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXX 123
P + L LYL+ N LQ + +L L L+L N ++ ++P
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 175
Query: 124 XXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF 180
+ P + L TLYL N LS +P+ L L +R
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL 231
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + S +P + +TKL LYL
Sbjct: 127 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSK 182
Query: 85 NQL 87
N +
Sbjct: 183 NHI 185
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
MSSL ++ + N+L C ++ L L +NM G + L ++ ++
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH--- 458
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
++ +IPK++ ++ L L + NQL+ L L+ +WL +N
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLS 59
+ L RFT L +P N + NL L L+ N+ ++PS L + + L +I
Sbjct: 122 LHGLKRFRFTTRRL-THIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFG 178
Query: 60 LDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIP 116
+ +P+ I G + KL +L L NQL+ +P+ + L L+ +WL N + P
Sbjct: 179 SNKLR-QMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 32 LFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI 91
L L+NN N K L + L + S P + KL RLYL NQL+ E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 92 PEELGNLAELEMLWLQNNFLTRA 114
PE++ L+ L + N +T+
Sbjct: 116 PEKMPKT--LQELRVHENEITKV 136
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 32 LFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI 91
L L+NN N K L + L + S P + KL RLYL NQL+ E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 92 PEELGNLAELEMLWLQNNFLTRA 114
PE++ L+ L + N +T+
Sbjct: 116 PEKMPKT--LQELRVHENEITKV 136
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 18 LPPNFCNHLSNLESLFLKNNMFHG-------KIPS----TLSNCKRLRNISLSLDDFSGT 66
+P +LS L L+L+NN ++PS L KRL IS + F G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGL 155
Query: 67 IP-----------KEIGNVTKLIRLY---LRGNQLQGEIPEELGNLAELEMLWLQN 108
+ K+I N+T L+RL L GN+L P L L LWL +
Sbjct: 156 VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
HL LESL+L NN + LS +L +SL + +P + +TKL LYL
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSK 185
Query: 85 NQL 87
N +
Sbjct: 186 NHI 188
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 27/116 (23%)
Query: 18 LPPNFCNHLSNLESLFLKNNMFHG-------KIPS----TLSNCKRLRNISLSLDDFSGT 66
+P +LS L L+L+NN ++PS L KRL IS + F G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA--FEGL 155
Query: 67 IP-----------KEIGNVTKLIRLY---LRGNQLQGEIPEELGNLAELEMLWLQN 108
+ K+I N+T L+RL L GN+L P L L LWL +
Sbjct: 156 VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 51/158 (32%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNI-- 56
+S L + F+NN L + N C HL+ LE+L L+ N KI + K L+ +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 57 ---SLSLDDFSG-----------------------------------------TIPKEIG 72
S+S D+ G +IPK++
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV 441
Query: 73 NVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNN 109
+ L L + NQL+ +P+ + L L+ +WL N
Sbjct: 442 KLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTN 478
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 43 IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN----QLQGEIPEELGNL 98
+PS + L+ + LS++ F N L LY+RGN L E+LGNL
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 99 AELEM 103
L++
Sbjct: 350 QTLDL 354
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 71 IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
+ N+++L L+L NQL E E +G L L L+L N +T P
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKR----LRNI 56
+++L + +N L LP N L NL LFL N +IPS + R L +
Sbjct: 127 LAALQYLYLQDNNL-QALPDNTFRDLGNLTHLFLHGN----RIPSVPEHAFRGLHSLDRL 181
Query: 57 SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
L + + P ++ +L+ LYL N L E L L L+ L L +N
Sbjct: 182 LLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3DXI|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
pdb|3DXI|B Chain B, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
Length = 320
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 45 STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81
S L ++ ++ +D F G PKE+ N+ K +R Y
Sbjct: 148 SKLKAIDKIADLFCXVDSFGGITPKEVKNLLKEVRKY 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 25 HLSNLESLFLKNNMFHG-------KIPS----TLSNCKRLRNIS---------LSLDDFS 64
+LS L+ L+L+NN +IPS L KRL IS L + +
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Query: 65 GTIPKEIGNVTKLIRLY---LRGNQLQGEIPEELGNLAELEMLWL 106
+EI N+T LI+L L GN L P L L+ LW+
Sbjct: 194 MCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
++ L ++ NN L LP +HL+ L+ L+L N +L+ + L+
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
+ +T L L L NQLQ L +L+ + L N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
++ L ++ NN L LP +HL+ L+ L+L N +L+ + L+
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
+ +T L L L NQLQ L +L+ + L N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 24 NHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82
N LS+LE L + N F +P + + L + LS P +++ L L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 83 RGNQLQGEIPEELGNLAELEMLWLQNN 109
NQL+ L L+ +WL N
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 34/92 (36%)
Query: 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
LP + L+NL L L +N L + LS + +T+L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
L L NQL+ L L+ +WL +N
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 34/92 (36%)
Query: 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
LP + L+NL L+L +N L + L + +T+L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
+L L NQL+ L L +WL NN
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 46 TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105
TL NC+ +R L IP T RL+L NQ+ P +L L+ L+
Sbjct: 15 TLVNCQNIR-----LASVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 106 LQNNFLTRAIP 116
+N LT AIP
Sbjct: 64 FNSNKLT-AIP 73
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 9 FTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP 68
+ NN +L P +HL NL+ L+ +N +L + L+ D+ +IP
Sbjct: 39 WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DNHLKSIP 97
Query: 69 K-EIGNVTKLIRLYLRGNQLQGE 90
+ N+ L +YL N E
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCE 120
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Query: 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
++SL + N L LP N L++L L L N +L+ ++L+
Sbjct: 51 LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
+ +T+L L L NQL+ L L+ +WL +N P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
+L LYL+GN+L+ P L +LE L L NN LT
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,583,085
Number of Sequences: 62578
Number of extensions: 154752
Number of successful extensions: 510
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 158
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)