Query 030257
Match_columns 180
No_of_seqs 141 out of 1869
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 10:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.8E-21 1.3E-25 155.6 12.1 162 3-166 141-302 (968)
2 PLN00113 leucine-rich repeat r 99.9 9.5E-21 2.1E-25 154.4 12.3 167 1-169 163-329 (968)
3 KOG4194 Membrane glycoprotein 99.8 6E-21 1.3E-25 141.7 -0.5 169 1-171 268-439 (873)
4 KOG4194 Membrane glycoprotein 99.7 5.9E-19 1.3E-23 131.3 3.4 173 3-178 174-346 (873)
5 KOG0617 Ras suppressor protein 99.7 1.3E-20 2.8E-25 120.6 -4.7 162 2-171 33-195 (264)
6 KOG0444 Cytoskeletal regulator 99.6 2.5E-17 5.5E-22 124.1 -2.0 167 3-175 127-294 (1255)
7 KOG0617 Ras suppressor protein 99.6 9.7E-17 2.1E-21 102.9 -3.2 143 26-174 32-175 (264)
8 KOG4237 Extracellular matrix p 99.5 6.3E-16 1.4E-20 110.4 -1.0 62 3-65 68-130 (498)
9 cd00116 LRR_RI Leucine-rich re 99.5 6.7E-15 1.4E-19 106.4 2.8 14 51-64 137-150 (319)
10 KOG0444 Cytoskeletal regulator 99.5 1.8E-15 3.9E-20 114.4 -1.0 157 1-162 77-259 (1255)
11 cd00116 LRR_RI Leucine-rich re 99.5 4.3E-14 9.3E-19 102.2 3.5 167 2-168 51-241 (319)
12 PLN03210 Resistant to P. syrin 99.4 3.7E-12 8.1E-17 105.7 12.9 80 3-85 612-691 (1153)
13 KOG0618 Serine/threonine phosp 99.4 2.6E-14 5.6E-19 111.5 0.2 154 2-160 310-488 (1081)
14 PLN03210 Resistant to P. syrin 99.4 6.5E-12 1.4E-16 104.3 11.9 59 2-62 634-692 (1153)
15 KOG0472 Leucine-rich repeat pr 99.4 2.9E-15 6.3E-20 107.5 -7.2 161 3-171 115-297 (565)
16 PF14580 LRR_9: Leucine-rich r 99.4 9.5E-13 2.1E-17 86.4 4.6 125 26-154 18-146 (175)
17 KOG0472 Leucine-rich repeat pr 99.3 5.5E-14 1.2E-18 101.0 -1.7 153 4-161 364-541 (565)
18 PF14580 LRR_9: Leucine-rich r 99.3 1.3E-12 2.8E-17 85.7 4.5 113 47-163 15-128 (175)
19 PRK15370 E3 ubiquitin-protein 99.2 4.2E-11 9.1E-16 94.8 8.5 147 2-167 220-385 (754)
20 KOG0618 Serine/threonine phosp 99.2 7.3E-13 1.6E-17 103.6 -1.3 151 3-158 360-510 (1081)
21 PRK15370 E3 ubiquitin-protein 99.2 4E-11 8.7E-16 94.9 8.4 148 2-168 199-365 (754)
22 PRK15387 E3 ubiquitin-protein 99.2 7.4E-11 1.6E-15 93.3 8.2 83 76-168 383-465 (788)
23 KOG4237 Extracellular matrix p 99.2 7.9E-13 1.7E-17 94.8 -2.4 169 1-171 90-345 (498)
24 PF13855 LRR_8: Leucine rich r 99.2 3.3E-11 7.1E-16 65.8 3.7 60 2-62 1-60 (61)
25 KOG3207 Beta-tubulin folding c 99.2 1.4E-11 2.9E-16 89.5 2.5 161 1-161 145-314 (505)
26 PLN03150 hypothetical protein; 99.2 1.2E-10 2.6E-15 91.2 7.9 108 52-160 419-527 (623)
27 PLN03150 hypothetical protein; 99.2 1.9E-10 4.1E-15 90.1 8.9 92 77-169 420-511 (623)
28 KOG3207 Beta-tubulin folding c 99.1 9.2E-12 2E-16 90.4 1.0 164 1-164 171-342 (505)
29 KOG1909 Ran GTPase-activating 99.1 4.2E-11 9.1E-16 84.7 3.4 163 1-163 91-285 (382)
30 KOG1259 Nischarin, modulator o 99.1 6.8E-12 1.5E-16 87.6 -0.8 134 27-167 284-417 (490)
31 PF13855 LRR_8: Leucine rich r 99.1 2E-10 4.3E-15 62.7 4.4 59 28-86 2-60 (61)
32 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 3.9E-15 85.9 4.3 157 3-167 117-296 (394)
33 PRK15387 E3 ubiquitin-protein 99.0 4.2E-09 9.1E-14 83.6 10.0 51 6-64 205-255 (788)
34 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.4E-16 92.0 -3.7 142 17-168 112-253 (722)
35 COG4886 Leucine-rich repeat (L 99.0 5.9E-10 1.3E-14 83.1 4.1 131 26-162 115-269 (394)
36 KOG1259 Nischarin, modulator o 98.8 4.9E-10 1.1E-14 78.5 -0.5 128 3-137 285-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 1.1E-08 2.4E-13 82.6 6.4 162 2-164 545-733 (889)
38 KOG0532 Leucine-rich repeat (L 98.7 2.7E-10 5.9E-15 85.5 -4.4 157 7-174 80-236 (722)
39 KOG3665 ZYG-1-like serine/thre 98.7 2.3E-09 5E-14 84.4 0.3 149 3-153 123-280 (699)
40 KOG2120 SCF ubiquitin ligase, 98.7 2.9E-10 6.3E-15 79.4 -5.5 155 3-158 186-348 (419)
41 KOG1909 Ran GTPase-activating 98.5 4.2E-08 9.2E-13 69.8 2.4 142 26-167 91-260 (382)
42 KOG2982 Uncharacterized conser 98.5 6.5E-08 1.4E-12 67.9 3.0 165 2-166 71-267 (418)
43 KOG4658 Apoptotic ATPase [Sign 98.5 9.9E-08 2.1E-12 77.3 4.4 108 26-134 544-653 (889)
44 KOG1644 U2-associated snRNP A' 98.5 5.3E-07 1.2E-11 59.8 6.2 108 26-135 41-152 (233)
45 KOG4579 Leucine-rich repeat (L 98.5 1.7E-08 3.6E-13 63.0 -1.2 83 27-112 53-136 (177)
46 COG5238 RNA1 Ran GTPase-activa 98.4 3.3E-07 7.1E-12 63.7 4.0 163 1-163 91-287 (388)
47 KOG1859 Leucine-rich repeat pr 98.4 2.2E-09 4.8E-14 83.1 -7.6 111 45-161 181-292 (1096)
48 KOG3665 ZYG-1-like serine/thre 98.4 1.2E-07 2.7E-12 74.9 1.7 149 27-177 122-279 (699)
49 KOG2120 SCF ubiquitin ligase, 98.4 2.1E-08 4.5E-13 70.3 -2.6 158 1-159 209-374 (419)
50 KOG1644 U2-associated snRNP A' 98.4 1.3E-06 2.9E-11 58.0 5.9 127 29-158 21-150 (233)
51 KOG0531 Protein phosphatase 1, 98.3 3.2E-08 7E-13 74.3 -2.3 104 26-135 94-198 (414)
52 KOG1859 Leucine-rich repeat pr 98.3 3.3E-08 7.1E-13 76.8 -2.8 105 52-163 165-269 (1096)
53 KOG0531 Protein phosphatase 1, 98.3 9.8E-08 2.1E-12 71.8 -1.3 151 1-161 94-268 (414)
54 PF13306 LRR_5: Leucine rich r 98.2 9E-06 2E-10 51.0 6.8 110 18-132 3-112 (129)
55 PF12799 LRR_4: Leucine Rich r 98.2 2.9E-06 6.2E-11 42.7 3.3 36 124-161 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 5.1E-06 1.1E-10 41.8 3.6 13 26-38 23-35 (44)
57 PF13306 LRR_5: Leucine rich r 98.1 2E-05 4.3E-10 49.4 6.8 117 2-125 12-128 (129)
58 KOG4579 Leucine-rich repeat (L 97.9 2.8E-07 6.2E-12 57.6 -3.9 104 29-136 29-136 (177)
59 KOG2982 Uncharacterized conser 97.9 3.6E-06 7.8E-11 59.4 0.4 109 26-134 44-157 (418)
60 KOG2739 Leucine-rich acidic nu 97.8 1.3E-05 2.8E-10 55.3 2.3 108 47-158 39-153 (260)
61 PRK15386 type III secretion pr 97.7 0.00024 5.2E-09 53.0 8.2 53 2-61 52-104 (426)
62 COG5238 RNA1 Ran GTPase-activa 97.7 5.5E-05 1.2E-09 53.0 3.7 87 2-88 30-133 (388)
63 KOG2123 Uncharacterized conser 97.6 2.1E-06 4.5E-11 60.0 -3.8 84 26-113 18-102 (388)
64 PRK15386 type III secretion pr 97.4 0.0018 3.8E-08 48.6 8.7 116 26-158 51-187 (426)
65 KOG2123 Uncharacterized conser 97.3 1E-05 2.2E-10 56.6 -3.2 99 2-105 19-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.3 9.2E-05 2E-09 51.2 1.2 106 26-133 42-153 (260)
67 KOG1947 Leucine rich repeat pr 96.9 0.00019 4E-09 55.0 -0.7 130 26-155 187-328 (482)
68 KOG1947 Leucine rich repeat pr 96.2 0.0019 4.1E-08 49.5 0.9 113 49-161 186-308 (482)
69 KOG4341 F-box protein containi 96.1 0.0012 2.7E-08 48.9 -0.5 171 4-174 270-453 (483)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0033 7.1E-08 26.3 0.9 19 149-168 1-19 (22)
71 KOG4341 F-box protein containi 95.3 0.0046 1E-07 46.0 0.0 155 2-156 294-460 (483)
72 smart00370 LRR Leucine-rich re 95.0 0.021 4.5E-07 24.8 1.7 22 1-23 1-22 (26)
73 smart00369 LRR_TYP Leucine-ric 95.0 0.021 4.5E-07 24.8 1.7 22 1-23 1-22 (26)
74 KOG3864 Uncharacterized conser 94.6 0.0041 8.9E-08 41.8 -1.7 84 76-160 102-188 (221)
75 PF13504 LRR_7: Leucine rich r 94.6 0.023 4.9E-07 22.1 1.1 12 3-14 2-13 (17)
76 PF13516 LRR_6: Leucine Rich r 94.0 0.011 2.4E-07 25.2 -0.5 18 148-165 2-19 (24)
77 KOG4308 LRR-containing protein 93.8 0.00036 7.9E-09 53.4 -9.0 39 123-161 262-303 (478)
78 KOG3864 Uncharacterized conser 93.6 0.013 2.8E-07 39.5 -0.9 73 99-171 101-175 (221)
79 KOG4308 LRR-containing protein 88.3 0.0016 3.4E-08 50.0 -10.4 168 4-171 89-285 (478)
80 smart00368 LRR_RI Leucine rich 81.2 1.3 2.8E-05 19.5 1.4 13 124-136 3-15 (28)
81 smart00365 LRR_SD22 Leucine-ri 77.8 2.5 5.3E-05 18.4 1.7 13 124-136 3-15 (26)
82 smart00364 LRR_BAC Leucine-ric 73.3 3.1 6.7E-05 18.1 1.4 13 149-161 3-15 (26)
83 smart00367 LRR_CC Leucine-rich 72.8 2.9 6.3E-05 17.9 1.3 13 147-159 1-13 (26)
84 KOG3763 mRNA export factor TAP 69.0 3.4 7.4E-05 32.6 1.8 11 75-85 244-254 (585)
85 KOG0473 Leucine-rich repeat pr 68.4 0.037 8.1E-07 38.4 -7.8 84 50-136 41-124 (326)
86 KOG0473 Leucine-rich repeat pr 65.8 0.16 3.5E-06 35.4 -5.1 83 26-111 41-123 (326)
87 KOG3763 mRNA export factor TAP 64.4 3.9 8.4E-05 32.3 1.3 12 122-133 243-254 (585)
88 TIGR00864 PCC polycystin catio 36.9 24 0.00051 33.9 1.8 32 8-40 1-32 (2740)
89 TIGR00864 PCC polycystin catio 24.3 60 0.0013 31.6 2.2 31 57-87 1-31 (2740)
90 smart00446 LRRcap occurring C- 23.3 51 0.0011 14.3 0.9 14 22-35 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=5.8e-21 Score=155.61 Aligned_cols=162 Identities=41% Similarity=0.590 Sum_probs=73.7
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
+|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|.+....|..+..+.+|+++++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 344444444444333333332 2555555555555544444444555555555555555444444444444555555555
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
.+|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeecc
Confidence 54444434444444444455555544444444444444444444444444444322 23333333444444444444443
Q ss_pred CCCh
Q 030257 163 PIPS 166 (180)
Q Consensus 163 ~~~~ 166 (180)
.+|.
T Consensus 299 ~~p~ 302 (968)
T PLN00113 299 EIPE 302 (968)
T ss_pred CCCh
Confidence 3333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=9.5e-21 Score=154.36 Aligned_cols=167 Identities=43% Similarity=0.629 Sum_probs=109.7
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 457788888888776666665544 7778888887777776677777777777777777777766666667777777777
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++.+|.+....|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCcc
Confidence 7777766655666666666677777766666655555555666666666666655532 444455555555555555555
Q ss_pred cCCCChhhh
Q 030257 161 SGPIPSFIL 169 (180)
Q Consensus 161 ~~~~~~~~~ 169 (180)
.+.+|..+.
T Consensus 321 ~~~~~~~~~ 329 (968)
T PLN00113 321 TGKIPVALT 329 (968)
T ss_pred CCcCChhHh
Confidence 554544443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=6e-21 Score=141.72 Aligned_cols=169 Identities=21% Similarity=0.220 Sum_probs=147.2
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
|.+++.|+++.|++. .+-.++.-++..|++|+++.|.|....+++|..+++|++|++++|+++...++.|..+..|++|
T Consensus 268 l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 457788999988887 5656665569999999999999998999999999999999999999998888899999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccC
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY 157 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 157 (180)
.+++|.+++....+|.++++|+.||+.+|.+...+. ..|..+++|+.|++.+|++.. ....++.++.+|+.||+.+
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccCcccceecCCC
Confidence 999999987666789999999999999999865443 357789999999999999874 3667899999999999999
Q ss_pred CcccCCCChhhhhh
Q 030257 158 NQLSGPIPSFILCK 171 (180)
Q Consensus 158 n~~~~~~~~~~~~~ 171 (180)
|.+-+..|+.|-.+
T Consensus 426 NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM 439 (873)
T ss_pred Ccceeecccccccc
Confidence 99998888877655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=5.9e-19 Score=131.32 Aligned_cols=173 Identities=20% Similarity=0.203 Sum_probs=107.3
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
++++|++++|.++ .+..+.|.++.+|.+|.++.|.++..-+.+|..+++|+.|++..|++..+..-.|.++++|+.+.+
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 4555555555554 344444444555555555555555444444555666666666666555333445555666666666
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
.+|.+......+|..+.+++++++..|++.....+++.++.+|+.|++++|.|... ..+.+..++.|+.|+++.|+++.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-ecchhhhcccceeEecccccccc
Confidence 66655533444566667777777777777666666777888888888888888743 55666778888889998888886
Q ss_pred CCChhhhhhccccccc
Q 030257 163 PIPSFILCKFSLLDNI 178 (180)
Q Consensus 163 ~~~~~~~~~~~~~~~l 178 (180)
..+..+..+ +.++.|
T Consensus 332 l~~~sf~~L-~~Le~L 346 (873)
T KOG4194|consen 332 LDEGSFRVL-SQLEEL 346 (873)
T ss_pred CChhHHHHH-HHhhhh
Confidence 555555444 444433
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-20 Score=120.57 Aligned_cols=162 Identities=27% Similarity=0.476 Sum_probs=141.3
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
...+.|.++.|.++ .+|+.+.. +.+|+.|++.+|+++ .+|.++..+++|++|.+.-|++. ..|..|+.++.|+++|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 45667888999987 88999987 999999999999998 88899999999999999999887 7899999999999999
Q ss_pred eeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 82 LRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++.|.+.. ..|..|-.++.|+.+.+++|.+. ..|...+.+.+|+.|.+.+|++. .+|..++.+..|+.|++.+|.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhccccee
Confidence 99998764 46777778889999999999886 56778889999999999999876 4788899999999999999999
Q ss_pred cCCCChhhhhh
Q 030257 161 SGPIPSFILCK 171 (180)
Q Consensus 161 ~~~~~~~~~~~ 171 (180)
+ .+|..++.+
T Consensus 186 ~-vlppel~~l 195 (264)
T KOG0617|consen 186 T-VLPPELANL 195 (264)
T ss_pred e-ecChhhhhh
Confidence 8 666666554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=2.5e-17 Score=124.14 Aligned_cols=167 Identities=26% Similarity=0.361 Sum_probs=129.1
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
++-.|++++|++. .+|...+-++..|-.|++++|.+. .+|+....+..|++|.+++|.+.......+..+.+|++|++
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 4556777777775 677777777777888888888776 66777778888888888888876555566677778888888
Q ss_pred eCCcCC-CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 83 RGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++..+ ..+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|.++ ++........++++|+++.|+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it--eL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT--ELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee--eeeccHHHHhhhhhhccccchhc
Confidence 877633 236777788889999999999887 57888888999999999999988 34555666778999999999988
Q ss_pred CCCChhhhhhcccc
Q 030257 162 GPIPSFILCKFSLL 175 (180)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (180)
..|..++.+.++.
T Consensus 282 -~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLT 294 (1255)
T ss_pred -cchHHHhhhHHHH
Confidence 6888877665543
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=9.7e-17 Score=102.92 Aligned_cols=143 Identities=30% Similarity=0.460 Sum_probs=126.8
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
+.+++.|.++.|.+. ..|..+..+.+|+.|.+++|++. ..|..+++++.|+.++++.|++. ..|..|+.++.|+.++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 678888999999988 67777899999999999999998 67888999999999999999987 6899999999999999
Q ss_pred ecCCcCCC-CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhccc
Q 030257 106 LQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174 (180)
Q Consensus 106 l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 174 (180)
+..|.+.+ ..|..|..+..|+.|.+++|++. .+|.-++++++|+.|.+++|.+. ..|+.++.+.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 99998864 56788888999999999999987 57888999999999999999988 588888776544
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=6.3e-16 Score=110.36 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=51.9
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecc-ccccc
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL-DDFSG 65 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~ 65 (180)
....+.+..|.++ .+|...|+.++.|+.|+++.|+|+...|++|.+++.+..|.+.+ |+|+.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 4567888888887 89999999999999999999999988889988888887777666 66664
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=6.7e-15 Score=106.42 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=6.4
Q ss_pred CCccEEEecccccc
Q 030257 51 KRLRNISLSLDDFS 64 (180)
Q Consensus 51 ~~L~~L~l~~~~~~ 64 (180)
++|+.+++.+|.++
T Consensus 137 ~~L~~L~L~~n~l~ 150 (319)
T cd00116 137 PALEKLVLGRNRLE 150 (319)
T ss_pred CCceEEEcCCCcCC
Confidence 44444444444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=1.8e-15 Score=114.35 Aligned_cols=157 Identities=31% Similarity=0.441 Sum_probs=112.9
Q ss_pred CCCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257 1 MSSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
+|.|+.+.+.+|++.. -+|.++|+ +..|+.|+++.|++. ..|..+...+++-.|++++|.+.++....+.++.-|-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 4566777777776543 47888887 888888888888876 67777777777778888888887665566677777778
Q ss_pred EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCC-------------------------CccccccCCCCCCeEEcccCc
Q 030257 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-------------------------AIPSSIFNLSSLSNLDLSVNN 134 (180)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~~~ 134 (180)
|++++|++. ..|..++.+..|++|.+++|++.. .+|..+-.+.+|..+|++.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 888888776 456667777777777777776532 233444455566677777777
Q ss_pred CCCCCCcccccCCCCccEEEccCCcccC
Q 030257 135 LTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
+. ..|..+..+.+|+.|++++|.++.
T Consensus 234 Lp--~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 234 LP--IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CC--cchHHHhhhhhhheeccCcCceee
Confidence 76 467777778888888888888773
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=4.3e-14 Score=102.22 Aligned_cols=167 Identities=23% Similarity=0.222 Sum_probs=101.9
Q ss_pred CCceEEEeeCCeecc--c---CchhhhhcCCCccEEEcccccCCCCCCccccCCCC---ccEEEeccccccc----ccch
Q 030257 2 SSLLSIRFTNNTLFG--E---LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKR---LRNISLSLDDFSG----TIPK 69 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~--~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~ 69 (180)
++++++++.++.+.+ . .....+..+++|+.|++++|.+....+..+..+.. |++|++++|.+.. ....
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 457777777766541 0 01123334778888888888776444444444444 8888888887652 2223
Q ss_pred hhhcc-CCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCC-
Q 030257 70 EIGNV-TKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGI- 139 (180)
Q Consensus 70 ~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~- 139 (180)
.+..+ ++|+++++.+|.++.. ....+..+.+|+.+++++|.+.+.. +..+...++|++|++++|.+.+..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 34555 7888888888877632 2234555667888888888776422 223344567888888888765321
Q ss_pred --CcccccCCCCccEEEccCCcccCCCChhh
Q 030257 140 --IPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 140 --~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
+...+..+++|+.|++++|.+.+.....+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 22345566778888888887765333333
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=3.7e-12 Score=105.74 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=40.4
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
+|+.|++.++.+. .++..+. .+++|+.++++++......|. +..+++|+.|++.+|......|..+..+.+|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 4445555554443 3333332 355556666655433323332 445556666666655544445555555566666666
Q ss_pred eCC
Q 030257 83 RGN 85 (180)
Q Consensus 83 ~~~ 85 (180)
.+|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 554
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-14 Score=111.49 Aligned_cols=154 Identities=32% Similarity=0.458 Sum_probs=120.0
Q ss_pred CCceEEEeeCCeecccCchhhhh-------------------------cCCCccEEEcccccCCCCCCccccCCCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCN-------------------------HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI 56 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 56 (180)
++|++|++..|.+. .+|..++. .++.|+.|.+.+|.+++..-..+.++.+|+.|
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 56788888888775 55554432 12346777788888887777778899999999
Q ss_pred EecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 57 SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 57 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
++++|++.......+.++..|++|++++|.++ ..|..+..+..|++|...+|.+. .+| .+..++.|+.+|++.|+++
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 99999998666667888999999999999987 56788888889999988888886 355 6677899999999999887
Q ss_pred CCCCcccccCCCCccEEEccCCcc
Q 030257 137 GGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 137 ~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
...++..... ++|+.||+++|.-
T Consensus 466 ~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 466 EVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhCCC-cccceeeccCCcc
Confidence 5545544433 7899999999974
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=6.5e-12 Score=104.33 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 62 (180)
++|+.++++++...+.+|. +..+++|+.|++.+|......|..+..+++|+.|++++|.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 4566666665543334442 2235566666666554444455555555555555555543
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.37 E-value=2.9e-15 Score=107.46 Aligned_cols=161 Identities=31% Similarity=0.445 Sum_probs=78.6
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
++++++++.|.+. .++.+++. +-.++.++-.+|++. ..|..+..+.++..+++.++.+. ..|+....+..|++++.
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhccc
Confidence 4555556555554 45555554 555555555555554 44444444444444444444443 22222222444444444
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCC---------------------Ccc-ccccCCCCCCeEEcccCcCCCCCC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTR---------------------AIP-SSIFNLSSLSNLDLSVNNLTGGII 140 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------------------~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 140 (180)
..|-+. ..|+.++.+.+|..+++.+|++.. ..| +..++++++.+||+.+|+++ +.
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk--e~ 267 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK--EV 267 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc--cC
Confidence 444333 233333444444444443333321 111 22335566666666666665 35
Q ss_pred cccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257 141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 141 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
|+.+..+++|+.||+++|.++ ..|..++.+
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 665656666666666666666 355554444
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.36 E-value=9.5e-13 Score=86.39 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=44.2
Q ss_pred CCCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
...+++|++.++.|+.. . .+. .+.+|+.|++++|.+... +.+..++.|++|++.+|.++.........+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45677888888877632 2 233 467788888888887643 346777888888888888774322222357788888
Q ss_pred EecCCcCCCCc-cccccCCCCCCeEEcccCcCCCCCCc--ccccCCCCccEEE
Q 030257 105 WLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIP--SLLGNQSSLQTLY 154 (180)
Q Consensus 105 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~ 154 (180)
++++|.+.+.. ...+..+++|+.|++.+|.+++...- ..+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 88888876522 24556778888888888877643111 1356677777776
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.35 E-value=5.5e-14 Score=101.02 Aligned_cols=153 Identities=29% Similarity=0.416 Sum_probs=105.4
Q ss_pred ceEEEeeCCeecccCchhhhhcCC--CccEEEcccccCC-----------------------CCCCccccCCCCccEEEe
Q 030257 4 LLSIRFTNNTLFGELPPNFCNHLS--NLESLFLKNNMFH-----------------------GKIPSTLSNCKRLRNISL 58 (180)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~-----------------------~~~~~~~~~l~~L~~L~l 58 (180)
.+.|++++-.++ .+|..+|..-. -++.++++.|++. +..|..+..+++|..|++
T Consensus 364 tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 364 TKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence 445556555555 56766665222 2555666666544 133344455667777777
Q ss_pred cccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCC
Q 030257 59 SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138 (180)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 138 (180)
++|.+. ..|..+..+..|+.++++.|++. ..|........++++-.++|.+....++.+.+|.+|..||+..|++.
T Consensus 443 ~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-- 518 (565)
T KOG0472|consen 443 SNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-- 518 (565)
T ss_pred ccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh--
Confidence 777665 45566666767777777777665 45555544455555555666776555667889999999999999997
Q ss_pred CCcccccCCCCccEEEccCCccc
Q 030257 139 IIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 139 ~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
.+|..++++.+|++|++++|++.
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhccccceeEEEecCCccC
Confidence 58899999999999999999998
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.34 E-value=1.3e-12 Score=85.75 Aligned_cols=113 Identities=28% Similarity=0.274 Sum_probs=45.4
Q ss_pred ccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCC
Q 030257 47 LSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125 (180)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 125 (180)
+.+..+++.|++.++.++.+ +.+. .+.+++.|++++|.+.. .+.+..++.|+.|++++|.+++........+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34556789999999999844 3454 57899999999999873 3467788999999999999985423233468999
Q ss_pred CeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
++|++++|.+.+...-..+..+++|+.|++.+|+++..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999998654445678899999999999999854
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=4.2e-11 Score=94.79 Aligned_cols=147 Identities=25% Similarity=0.407 Sum_probs=72.2
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++.+|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+. ..|..+. .+|+.|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 35777777777765 5555442 24555666666554 3333322 24555555555544 2232221 2445555
Q ss_pred eeCCcCCCCcchhhc-------------------CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc
Q 030257 82 LRGNQLQGEIPEELG-------------------NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS 142 (180)
Q Consensus 82 l~~~~~~~~~~~~~~-------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 142 (180)
+++|.++. .|..+. -.++|+.|++++|.++. +|..+. ++|+.|++++|.++ .+|.
T Consensus 290 Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~--~LP~ 363 (754)
T PRK15370 290 VYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT--VLPE 363 (754)
T ss_pred CCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC--cCCh
Confidence 55444431 111110 11345556666665543 333222 46666777766665 2343
Q ss_pred cccCCCCccEEEccCCcccCCCChh
Q 030257 143 LLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 143 ~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
.+ .++|+.|++++|.++ .+|..
T Consensus 364 ~l--p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 364 TL--PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred hh--cCCcCEEECCCCcCC-CCCHh
Confidence 33 246666666666666 34443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=7.3e-13 Score=103.60 Aligned_cols=151 Identities=27% Similarity=0.313 Sum_probs=104.9
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
.|+.|.+.+|.+++..-+ .+.++.+|++|++++|.+.......+.++..|++|++++|.+. ..|..+..+..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 455666777777644322 3445888888888888887444455677888888888888887 56677888888888888
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
.+|.+. .+| .+..++.|+.+|++.|.++..........++|++||+++|.-... -...+..++.+...++.-+
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~-d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF-DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc-chhhhHHhhhhhheecccC
Confidence 888876 466 667788888888888888654333333347888888888852211 2234556666677766666
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=4e-11 Score=94.90 Aligned_cols=148 Identities=28% Similarity=0.487 Sum_probs=105.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .+|..++ .+|++|++++|.+. .+|..+. .+|+.|++++|.+. ..|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 46889999999987 6887764 58999999999987 5565443 47999999999988 4555443 5799999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcccccc-------------------CCCCCCeEEcccCcCCCCCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-------------------NLSSLSNLDLSVNNLTGGIIPS 142 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~~~~~~ 142 (180)
+++|.+. ..|..+. ++|+.|++++|.++. +|..+. -.++|+.|++++|.++. ++.
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~--LP~ 342 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS--LPA 342 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc--CCh
Confidence 9999987 4565442 589999999998874 232211 11356666666666652 343
Q ss_pred cccCCCCccEEEccCCcccCCCChhh
Q 030257 143 LLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 143 ~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
.+ .++|+.|++++|.+. .+|..+
T Consensus 343 ~l--~~sL~~L~Ls~N~L~-~LP~~l 365 (754)
T PRK15370 343 SL--PPELQVLDVSKNQIT-VLPETL 365 (754)
T ss_pred hh--cCcccEEECCCCCCC-cCChhh
Confidence 33 257888888888877 456543
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.20 E-value=7.4e-11 Score=93.31 Aligned_cols=83 Identities=34% Similarity=0.344 Sum_probs=51.2
Q ss_pred CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYL 155 (180)
Q Consensus 76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 155 (180)
+|+.|++++|.+.. .|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|..+..+++|+.+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc--ccChHHhhccCCCeEEC
Confidence 34555555555442 2221 2345666666666553 3332 235667777777776 36777778888899999
Q ss_pred cCCcccCCCChhh
Q 030257 156 SYNQLSGPIPSFI 168 (180)
Q Consensus 156 ~~n~~~~~~~~~~ 168 (180)
++|++++.++..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 9999887776655
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=7.9e-13 Score=94.83 Aligned_cols=169 Identities=22% Similarity=0.217 Sum_probs=115.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEccc-ccCCCCCCcccc------------------------CCCCccE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLS------------------------NCKRLRN 55 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~------------------------~l~~L~~ 55 (180)
+++|+.|+++.|.+. .+.++.|.+++.+.+|.+.+ |+|++...++|. .++++..
T Consensus 90 l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 468999999999997 67777777799988887776 777643333333 3445555
Q ss_pred EEecccccccccchhhhccCCccEEEeeCCc-------------------------------------------------
Q 030257 56 ISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ------------------------------------------------- 86 (180)
Q Consensus 56 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~------------------------------------------------- 86 (180)
|.+.++.+..+....+..+..++.+++-.|.
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 5555554442222233333333333332221
Q ss_pred ------------CCCCcch-hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEE
Q 030257 87 ------------LQGEIPE-ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL 153 (180)
Q Consensus 87 ------------~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 153 (180)
.....|. .|+.+++|+++++++|.+++..+.+|.....+++|.+.+|.+... ...++.++..|++|
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTL 327 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceee
Confidence 0111222 356778999999999999987778899999999999999988632 44578889999999
Q ss_pred EccCCcccCCCChhhhhh
Q 030257 154 YLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 154 ~l~~n~~~~~~~~~~~~~ 171 (180)
++++|+|+...|..|...
T Consensus 328 ~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTL 345 (498)
T ss_pred eecCCeeEEEeccccccc
Confidence 999999998888776544
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.17 E-value=3.3e-11 Score=65.78 Aligned_cols=60 Identities=38% Similarity=0.552 Sum_probs=38.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 62 (180)
|+|++|++.+|.+. .+|.+++.++++|++|++++|.+....+.+|.++++|+++++++|+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665 5666666666666666666666665555566666666666666654
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-11 Score=89.52 Aligned_cols=161 Identities=21% Similarity=0.175 Sum_probs=101.0
Q ss_pred CCCceEEEeeCCeeccc-CchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccc-hhhhccCCc
Q 030257 1 MSSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKL 77 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 77 (180)
|++++.|+++.|-+..- ....+...+|+|+.|+++.|.+.-... ..-..++.++.|.++.|+++...- .....++++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 57788888888766531 235566678888888888887651111 111246788888888888873322 234567888
Q ss_pred cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCccc-----ccCCCCcc
Q 030257 78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSL-----LGNQSSLQ 151 (180)
Q Consensus 78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~ 151 (180)
+.|++..|...........-+..|+.|++++|.+.+... .....++.|..|+++.+.+.+...++. ....++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 888888774110111112234567888888887764322 344567777778887777765444443 34456778
Q ss_pred EEEccCCccc
Q 030257 152 TLYLSYNQLS 161 (180)
Q Consensus 152 ~l~l~~n~~~ 161 (180)
.|++..|++.
T Consensus 305 ~L~i~~N~I~ 314 (505)
T KOG3207|consen 305 YLNISENNIR 314 (505)
T ss_pred eeecccCccc
Confidence 8888888774
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=1.2e-10 Score=91.19 Aligned_cols=108 Identities=31% Similarity=0.514 Sum_probs=76.0
Q ss_pred CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257 52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (180)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 131 (180)
.++.|++.++.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36667777777766677777777777777777777766667677777777777777777777777777777777777777
Q ss_pred cCcCCCCCCcccccC-CCCccEEEccCCcc
Q 030257 132 VNNLTGGIIPSLLGN-QSSLQTLYLSYNQL 160 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~L~~l~l~~n~~ 160 (180)
+|.+++. +|..+.. ..++..+++.+|..
T Consensus 499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGR-VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCccccc-CChHHhhccccCceEEecCCcc
Confidence 7777654 5554443 23456677777654
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=1.9e-10 Score=90.08 Aligned_cols=92 Identities=37% Similarity=0.537 Sum_probs=55.0
Q ss_pred ccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEcc
Q 030257 77 LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLS 156 (180)
Q Consensus 77 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 156 (180)
++.|++.++.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++. +|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 45556666655555555566666666666666666555555556666666666666666543 45555566666666666
Q ss_pred CCcccCCCChhhh
Q 030257 157 YNQLSGPIPSFIL 169 (180)
Q Consensus 157 ~n~~~~~~~~~~~ 169 (180)
+|.+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 6666666665544
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.2e-12 Score=90.38 Aligned_cols=164 Identities=21% Similarity=0.196 Sum_probs=120.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC-CCccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
||+|+.|+++.|.+........-..+++|+.|.+++|.+... .......+|++..|++..|...........-+..|++
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 689999999999886433333334589999999999988733 2233457899999999998543233344556778999
Q ss_pred EEeeCCcCCCCc-chhhcCCCcccEEEecCCcCCCC-cccc-----ccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257 80 LYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRA-IPSS-----IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 80 l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (180)
|++.+|.+-... -.....++.|..++++.+.+.+. .++. ....++|+.|++..|.+.++.....+..+++|+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence 999999865321 24567889999999999988652 2332 3467899999999999986544445666778888
Q ss_pred EEccCCcccCCC
Q 030257 153 LYLSYNQLSGPI 164 (180)
Q Consensus 153 l~l~~n~~~~~~ 164 (180)
+.+..|.+..+.
T Consensus 331 l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 331 LRITLNYLNKET 342 (505)
T ss_pred hhcccccccccc
Confidence 888888876443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=4.2e-11 Score=84.70 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=113.3
Q ss_pred CCCceEEEeeCCeecccCchhh---hhcCCCccEEEcccccCCCCCC-------------ccccCCCCccEEEecccccc
Q 030257 1 MSSLLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIP-------------STLSNCKRLRNISLSLDDFS 64 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~~~~~ 64 (180)
+|.|++++|++|.+-...++.+ .+++..|++|.+.+|.+...-. .....=+.||.+...+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 3689999999998764444433 4567889999999997763221 12234568999999988875
Q ss_pred c----ccchhhhccCCccEEEeeCCcCCCCcc----hhhcCCCcccEEEecCCcCCCC----ccccccCCCCCCeEEccc
Q 030257 65 G----TIPKEIGNVTKLIRLYLRGNQLQGEIP----EELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLSV 132 (180)
Q Consensus 65 ~----~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~ 132 (180)
. .....+..++.|+++.+..|.+..... .++..|++|+.||+++|.++.. +...++.+++|+++++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 334456778899999999888764432 4567889999999999988643 334667788899999999
Q ss_pred CcCCCCCCc---ccc-cCCCCccEEEccCCcccCC
Q 030257 133 NNLTGGIIP---SLL-GNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 133 ~~~~~~~~~---~~~-~~~~~L~~l~l~~n~~~~~ 163 (180)
|.+.+.... ..+ ...++|+.+.+.+|.++..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 887643111 112 2356777777777776543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=6.8e-12 Score=87.58 Aligned_cols=134 Identities=29% Similarity=0.336 Sum_probs=106.7
Q ss_pred CCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEe
Q 030257 27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL 106 (180)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l 106 (180)
..|+++++++|.|. .+..+..-.|.++.|+++.|++..+ +.+..+++|++||+++|.+. ....+-..+-+++++.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 46899999999887 6666677789999999999999744 44888999999999999876 34444456678999999
Q ss_pred cCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257 107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
.+|.+. -..++..+-+|..||+++|+|........++.++.|+++.+.+|++.. +++.
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY 417 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVDY 417 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cchH
Confidence 999874 245666778899999999998744344568899999999999999984 5543
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=2e-10 Score=62.66 Aligned_cols=59 Identities=34% Similarity=0.439 Sum_probs=31.7
Q ss_pred CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86 (180)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 86 (180)
+|++|++++|.+....+.+|.++++|++|++++|.+....++.|..+++|+++++.+|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444555555555555555543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.8e-10 Score=85.90 Aligned_cols=157 Identities=41% Similarity=0.590 Sum_probs=83.7
Q ss_pred CceEEEeeCCeecccCchhhhhcCC-CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLS-NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
.++.+.+.++.++ .++..... +. +|+.|++++|.+. ..+..+..+++|+.|++.+|.+.. .+......+.++.++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 3455555555554 34443332 32 5555555555554 333334555555555555555542 222222445555555
Q ss_pred eeCCcCCC----------------------CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCC
Q 030257 82 LRGNQLQG----------------------EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGI 139 (180)
Q Consensus 82 l~~~~~~~----------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 139 (180)
+++|.+.. ..+..+..+.++..+.+.+|++.. .+.....++.++.|++++|.+++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-- 269 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS-- 269 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccc--
Confidence 55555441 123333334444444444444431 24455666778888888888874
Q ss_pred CcccccCCCCccEEEccCCcccCCCChh
Q 030257 140 IPSLLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 140 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
++. +....+++.++++++.+....+..
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhh
Confidence 333 667788888888888877554443
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.99 E-value=4.2e-09 Score=83.62 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=23.9
Q ss_pred EEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccc
Q 030257 6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (180)
Q Consensus 6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 64 (180)
.|+++++.++ .+|..+. ++|+.|++.+|++. .+|. ..++|++|++++|.+.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred EEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC
Confidence 4555555554 4554442 24455555555544 2222 1244555555555444
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=1.6e-11 Score=91.99 Aligned_cols=142 Identities=31% Similarity=0.525 Sum_probs=103.6
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 96 (180)
.+|..+.. +..|+.++++.|++. .+|..+.. --|+.|.+++|.+. ..|..++....|..++.+.|.+. ..|..+.
T Consensus 112 ~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 112 TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred ecchhhhh-hhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence 45555544 667777777777776 55554433 34667777777776 55666667778888888888776 4677777
Q ss_pred CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257 97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
.+.+|+.+++.+|.+.+ +|..+..+ .|..||++.|+++ .+|..|.+++.|+.|-|.+|++.. .|..+
T Consensus 187 ~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred hHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 88888888888888874 45444444 5889999999998 478889999999999999999984 55444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=5.9e-10 Score=83.13 Aligned_cols=131 Identities=40% Similarity=0.539 Sum_probs=93.2
Q ss_pred CCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
+..++.+.+.++.+. ..+....... +|+.|+++++.+. ..+..+..+++|+.|++..|.+.. .+......+.|+.+
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 678999999999988 5555556664 9999999999987 444568899999999999999873 44444467889999
Q ss_pred EecCCcCCCCccccccCCCCCCeEEcccC-----------------------cCCCCCCcccccCCCCccEEEccCCccc
Q 030257 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVN-----------------------NLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
++++|.+.. ++........|+++.+++| ++.+ .+..+..+++++.+++++|.++
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccccc
Confidence 999998864 3332222333555555555 2221 1344556667888888888877
Q ss_pred C
Q 030257 162 G 162 (180)
Q Consensus 162 ~ 162 (180)
.
T Consensus 269 ~ 269 (394)
T COG4886 269 S 269 (394)
T ss_pred c
Confidence 4
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=4.9e-10 Score=78.49 Aligned_cols=128 Identities=22% Similarity=0.223 Sum_probs=102.6
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
.|+.+++++|.++ .+..++-- .|.++.|+++.|.+.. . +.+..+++|..|++++|.++ ...+.-..+.+++.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhh-ccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3678899999886 55555543 8999999999999862 2 33788999999999999887 44566677889999999
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTG 137 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 137 (180)
..|.+. ..+.++.+-+|..+++.+|++... ....++++|.|+++.+.+|.+..
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999876 346677888999999999999642 23577889999999999998863
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-08 Score=82.59 Aligned_cols=162 Identities=27% Similarity=0.355 Sum_probs=112.6
Q ss_pred CCceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+.|++|-+.++.- ...++..+|..++.|++|++++|.-...+|..++.+-+||+|+++++.+. ..|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 5688888888862 23678888888999999999988766789999999999999999999988 788899999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCC--CCccccccCCCCCCeEEcccCcC-----------------------
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT--RAIPSSIFNLSSLSNLDLSVNNL----------------------- 135 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~----------------------- 135 (180)
++..+......+.....+++|+.+.+...... ......+..+.+|+.+.......
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 99887754344555556889999988655421 11112223333333332211111
Q ss_pred -CCCCCcccccCCCCccEEEccCCcccCCC
Q 030257 136 -TGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 136 -~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 164 (180)
.-......+..+.+|+.|.+.++.+....
T Consensus 704 ~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 704 CSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cccceeecccccccCcceEEEEcCCCchhh
Confidence 00112334567788899999998886433
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=2.7e-10 Score=85.53 Aligned_cols=157 Identities=31% Similarity=0.454 Sum_probs=115.0
Q ss_pred EEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257 7 IRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86 (180)
Q Consensus 7 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 86 (180)
.+++.|++. .+|..+.. +..|+.+.++.|.+. ..|.++..+..|.+++++.|+++ ..|..++.++ |+.+-+.+|+
T Consensus 80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 455566664 56666654 666777777777766 67777788888888888888887 4555555554 7888888888
Q ss_pred CCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257 87 LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 87 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 166 (180)
+. ..|..++....|..++.+.|.+. ..+..+..+.+|+.|.+..|++.+ +|..+. .-.|..||++.|.++ .+|-
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCcee-ecch
Confidence 77 57777777788888888888886 456666777888888888888763 555555 457889999999998 6888
Q ss_pred hhhhhccc
Q 030257 167 FILCKFSL 174 (180)
Q Consensus 167 ~~~~~~~~ 174 (180)
.|..+..+
T Consensus 229 ~fr~m~~L 236 (722)
T KOG0532|consen 229 DFRKMRHL 236 (722)
T ss_pred hhhhhhhh
Confidence 87666544
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.73 E-value=2.3e-09 Score=84.42 Aligned_cols=149 Identities=21% Similarity=0.274 Sum_probs=86.1
Q ss_pred CceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 3 SLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 3 ~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+|+.|+++|... ....+..++.-+|.|+.|.+.+-.+. +.+..-...+++|+.||++++.++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 567777776542 22334555566788888888776554 22233345677888888888777633 556777777777
Q ss_pred EeeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCc--c----ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEE
Q 030257 81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI--P----SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL 153 (180)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 153 (180)
.+.+=.+.. .....+-++++|+.||+++.+-.... . +.-..+|.|+.||.|++.+.+......+...++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 766544432 12234556777888887765543211 1 1123467777777777776543333333333444433
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.9e-10 Score=79.36 Aligned_cols=155 Identities=19% Similarity=0.127 Sum_probs=84.3
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhhhccCCccEE
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRL 80 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l 80 (180)
.|+.++++...++-.--..+.+.+.+|+.|.+.|+.+.+.....+..-.+|+.++++.|.--+. ..-.+.++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777777765433344556677888888888877766667777778888888887653211 11245677788888
Q ss_pred EeeCCcCCCCcch-hhcCC-CcccEEEecCCcCC---CCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccEEE
Q 030257 81 YLRGNQLQGEIPE-ELGNL-AELEMLWLQNNFLT---RAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLY 154 (180)
Q Consensus 81 ~l~~~~~~~~~~~-~~~~~-~~L~~l~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~ 154 (180)
++++|........ .+.+. .+++.|+++|+.-. .........+|++.+||+++|. +++ .....+.+.+.|+++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence 8888765422111 11111 34555555544321 0111122345555555555553 222 1222334444555555
Q ss_pred ccCC
Q 030257 155 LSYN 158 (180)
Q Consensus 155 l~~n 158 (180)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 5554
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=4.2e-08 Score=69.84 Aligned_cols=142 Identities=22% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCCccEEEcccccCCCCCCccc----cCCCCccEEEecccccccccchh-------------hhccCCccEEEeeCCcCC
Q 030257 26 LSNLESLFLKNNMFHGKIPSTL----SNCKRLRNISLSLDDFSGTIPKE-------------IGNVTKLIRLYLRGNQLQ 88 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~l~l~~~~~~ 88 (180)
.+.|++++|++|.+....+..| ..+..|++|++.+|.+....... ..+-+.|+++.+.+|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 3456666666665553333322 34556666666666654221111 122345666666666654
Q ss_pred CCc----chhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCC---CCcccccCCCCccEEEccC
Q 030257 89 GEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGG---IIPSLLGNQSSLQTLYLSY 157 (180)
Q Consensus 89 ~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~ 157 (180)
... ...++..+.|+.+.++.|.|.... ...+..+++|++||+.+|-++.. .+...++.+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 221 123445556666666666663221 13455667777777777665421 1223445556667777777
Q ss_pred CcccCCCChh
Q 030257 158 NQLSGPIPSF 167 (180)
Q Consensus 158 n~~~~~~~~~ 167 (180)
|.+.+.-...
T Consensus 251 cll~~~Ga~a 260 (382)
T KOG1909|consen 251 CLLENEGAIA 260 (382)
T ss_pred cccccccHHH
Confidence 6665444333
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=6.5e-08 Score=67.89 Aligned_cols=165 Identities=22% Similarity=0.212 Sum_probs=104.3
Q ss_pred CCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc-cchhhhccCCccE
Q 030257 2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR 79 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 79 (180)
+.++.+++.+|.+.+ +-..++..++|.|+.|+++.|++......-.....+|+.+.+.+..+... ....+..++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 346678888888763 12355677899999999999977632222114567899999988877633 2334566788888
Q ss_pred EEeeCCcCCCC----------cchh-------------------hcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEE
Q 030257 80 LYLRGNQLQGE----------IPEE-------------------LGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLD 129 (180)
Q Consensus 80 l~l~~~~~~~~----------~~~~-------------------~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~ 129 (180)
++++.|.+... .+.. .+-++++..+.+..|++... ........|.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 88877743211 0000 01124455555555555321 122344566677888
Q ss_pred cccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257 130 LSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 166 (180)
++.+.+.++.--+.+...++|..+.+..+++.+....
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 8888887654556677888999999999988765543
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=9.9e-08 Score=77.27 Aligned_cols=108 Identities=27% Similarity=0.337 Sum_probs=85.0
Q ss_pred CCCccEEEccccc--CCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257 26 LSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (180)
Q Consensus 26 l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 103 (180)
.+.|++|-+.++. +.......|..++.|+.||+++|.-....|..++.+.+|++|++.++.+. ..|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 4578888888875 44344445778999999999987766688888999999999999998887 57888888889999
Q ss_pred EEecCCcCCCCccccccCCCCCCeEEcccCc
Q 030257 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (180)
Q Consensus 104 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 134 (180)
|++..+.....++.....+.+|++|.+....
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9988776554556677778889999887765
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.48 E-value=5.3e-07 Score=59.84 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCC-cchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l 104 (180)
+.+...+++.+|.+. .. +.|..++.|.+|.+++|+++.+.|..-..+++++.|.+.+|.+... ....+..|++|+.|
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 445666777777764 22 3356777888888888888776666666677788888888876533 22345677788888
Q ss_pred EecCCcCCCCcc---ccccCCCCCCeEEcccCcC
Q 030257 105 WLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 105 ~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~ 135 (180)
.+-+|+++.... -.+..+|+|+.||+....-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888887764322 2345677888887766533
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=1.7e-08 Score=62.97 Aligned_cols=83 Identities=27% Similarity=0.399 Sum_probs=48.4
Q ss_pred CCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 27 SNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
..|...++++|.+. .+|..|. .++.+.++++.+|.++ ..|..+..++.|+.+++..|.+. ..|..+..+.++-+|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34555666666665 3444443 3456666666666666 34444666666666666666655 4455544456666666
Q ss_pred ecCCcCC
Q 030257 106 LQNNFLT 112 (180)
Q Consensus 106 l~~~~~~ 112 (180)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 6666554
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=3.3e-07 Score=63.70 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=102.9
Q ss_pred CCCceEEEeeCCeecccCchh---hhhcCCCccEEEcccccCCCCCCcc-------------ccCCCCccEEEecccccc
Q 030257 1 MSSLLSIRFTNNTLFGELPPN---FCNHLSNLESLFLKNNMFHGKIPST-------------LSNCKRLRNISLSLDDFS 64 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~ 64 (180)
||.|+++++++|.+....|.. +.++-..|.+|.+++|.+.+..... ...-|.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 678888888888876555533 3344667888888888765332221 223567888888877765
Q ss_pred cc----cchhhhccCCccEEEeeCCcCCCCcch-----hhcCCCcccEEEecCCcCCCC----ccccccCCCCCCeEEcc
Q 030257 65 GT----IPKEIGNVTKLIRLYLRGNQLQGEIPE-----ELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLS 131 (180)
Q Consensus 65 ~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~ 131 (180)
.- ....+.....++++.+..|.+...... .+..+++|+.|++++|.++.. ....+..|+.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 21 122344556788888888887654222 234567888899988888643 23456677888888888
Q ss_pred cCcCCCCCCcccc-----cCCCCccEEEccCCcccCC
Q 030257 132 VNNLTGGIIPSLL-----GNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 132 ~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~~ 163 (180)
+|-++.......+ ...++|..|...+|.+.+.
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 8877643322222 1245677777777655443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=2.2e-09 Score=83.08 Aligned_cols=111 Identities=34% Similarity=0.350 Sum_probs=64.6
Q ss_pred ccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchh-hcCCCcccEEEecCCcCCCCccccccCCC
Q 030257 45 STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLS 123 (180)
Q Consensus 45 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 123 (180)
.++.-++.++.|+++.|..+.+ +.+..++.|++||++.|.+.. .|.. ...|. |..|++.+|-++. ...+.++.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTT--LRGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHh--hhhHHhhh
Confidence 3344456666666666666533 255666667777777666552 2221 22233 6666666665542 23344566
Q ss_pred CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+|+.||+++|-+.+..-...++.+..|..|.|.||++.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777777776664433344555667777777777764
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.39 E-value=1.2e-07 Score=74.93 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=101.9
Q ss_pred CCccEEEcccccCC-CCCCccc-cCCCCccEEEeccccccc-ccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257 27 SNLESLFLKNNMFH-GKIPSTL-SNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (180)
Q Consensus 27 ~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 103 (180)
.+|++|+++|...- ..-+..+ .-+|.|+.|.+.+-.... .......++++|..||+++++++.. .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56888888885422 1111122 348999999999866542 2234456789999999999998743 67888899999
Q ss_pred EEecCCcCCC-CccccccCCCCCCeEEcccCcCCCCC-Cc----ccccCCCCccEEEccCCcccCCCChhhhhhcccccc
Q 030257 104 LWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGI-IP----SLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177 (180)
Q Consensus 104 l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~-~~----~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~ 177 (180)
|.+.+=.+.. .....+.++.+|++||+|.....+.. .. +.-..++.|+.||.++..+...+-+.+....+.+++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9887766643 22235678999999999987654221 01 122358899999999998887777776655554443
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.1e-08 Score=70.30 Aligned_cols=158 Identities=20% Similarity=0.151 Sum_probs=107.1
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCC-CCccccCCCCccEEEeccccccccc-chhhhc-cCC
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGK-IPSTLSNCKRLRNISLSLDDFSGTI-PKEIGN-VTK 76 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~-l~~ 76 (180)
|.+|+.|.+.++.+.+.+...+.. -.+|+.++++.++ ++.. ..--+..|+.|..|+++.|...... ...... -++
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 467889999999988766666665 7889999999874 3311 1122467899999999999875322 112222 256
Q ss_pred ccEEEeeCCcCC--CC-cchhhcCCCcccEEEecCCcC-CCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257 77 LIRLYLRGNQLQ--GE-IPEELGNLAELEMLWLQNNFL-TRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 77 L~~l~l~~~~~~--~~-~~~~~~~~~~L~~l~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (180)
++.|++++++-. .. ...-.+.|+++..||++++.. .......+..++.|+++.++.|.--.......+...++|..
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 788888877522 11 122346789999999987754 33334566778899999999986432233345677788999
Q ss_pred EEccCCc
Q 030257 153 LYLSYNQ 159 (180)
Q Consensus 153 l~l~~n~ 159 (180)
|++.++.
T Consensus 368 Ldv~g~v 374 (419)
T KOG2120|consen 368 LDVFGCV 374 (419)
T ss_pred EEecccc
Confidence 9988874
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.37 E-value=1.3e-06 Score=58.03 Aligned_cols=127 Identities=20% Similarity=0.115 Sum_probs=90.1
Q ss_pred ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (180)
Q Consensus 29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (180)
=+++++.+.++....- --........+++++|.+. ..+.|..++.|.+|.+++|+++...|.--..++++..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3455666665542211 0112446778899999875 345688899999999999999876665545568899999999
Q ss_pred CcCCCCc-cccccCCCCCCeEEcccCcCCCCCCc--ccccCCCCccEEEccCC
Q 030257 109 NFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIP--SLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 109 ~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~n 158 (180)
|++.... .+.+..+|+|+.|.+-+|.++...-- ..+..+++|++||...-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9997532 24567889999999999988743111 25678899999997654
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=3.2e-08 Score=74.33 Aligned_cols=104 Identities=29% Similarity=0.343 Sum_probs=47.7
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
+.+++.+++.+|.+... ...+..+++|+.|++++|.+... ..+..++.|+.|++.+|.+.. ...+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 45555555555555422 22134455555555555555422 223444445555555555441 22333345555555
Q ss_pred ecCCcCCCCcc-ccccCCCCCCeEEcccCcC
Q 030257 106 LQNNFLTRAIP-SSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 106 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 135 (180)
+++|.+..... . ...+.+++.+++.+|.+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 55555543211 1 23344444444444433
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=3.3e-08 Score=76.84 Aligned_cols=105 Identities=30% Similarity=0.305 Sum_probs=73.6
Q ss_pred CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257 52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (180)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 131 (180)
+|...+.++|++. .+..++.-++.++.|++++|.+.. ...+..++.|++||++.|.+.. .|..=..-.+|..|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence 3444455555554 445566667888899999988763 3477888899999999888863 34322223458889999
Q ss_pred cCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
+|.++. ...+.++++|+.||++.|-+.+.
T Consensus 241 nN~l~t---L~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 241 NNALTT---LRGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ccHHHh---hhhHHhhhhhhccchhHhhhhcc
Confidence 888862 24467888999999999977643
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=9.8e-08 Score=71.76 Aligned_cols=151 Identities=28% Similarity=0.266 Sum_probs=97.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+.++..+++.+|.+.+ + .....++++|++|++++|.|.... .+..++.|+.|++.+|.+... ..+..+..++.+
T Consensus 94 ~~~l~~l~l~~n~i~~-i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-I-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhh-c-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 3678889999988863 3 222445899999999999987432 345677799999999998633 445668889999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCC------------------------CCeEEcccCcCC
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS------------------------LSNLDLSVNNLT 136 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~------------------------L~~L~l~~~~~~ 136 (180)
++++|.+...-+.....+.+++.+.+.+|.+.. ...+..+.. |+.+++++|.+.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence 999988763322003567788888888886642 111111111 556666666654
Q ss_pred CCCCcccccCCCCccEEEccCCccc
Q 030257 137 GGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 137 ~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
. .+..+.....+..+++..|.+.
T Consensus 246 ~--~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 246 R--SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred c--ccccccccccccccchhhcccc
Confidence 2 2233445566666666666554
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.19 E-value=9e-06 Score=50.95 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=49.0
Q ss_pred CchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcC
Q 030257 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN 97 (180)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 97 (180)
++...|.++.+|+.+.+.. .+......+|..+.+++.+.+..+ +.......+..+..++.+.+.. .+.......+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4455555566677777664 344344455666666777776654 4434445566666677776654 222223344555
Q ss_pred CCcccEEEecCCcCCCCccccccCCCCCCeEEccc
Q 030257 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132 (180)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 132 (180)
+++++.+++..+ +.......+.+. +++.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666666666543 332223344444 566665544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2.9e-06 Score=42.72 Aligned_cols=36 Identities=47% Similarity=0.637 Sum_probs=19.5
Q ss_pred CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+|++|++++|.+++ ++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 45566666666652 3444556666666666666655
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=5.1e-06 Score=41.78 Aligned_cols=13 Identities=62% Similarity=0.705 Sum_probs=5.3
Q ss_pred CCCccEEEccccc
Q 030257 26 LSNLESLFLKNNM 38 (180)
Q Consensus 26 l~~L~~L~l~~~~ 38 (180)
|++|++|++++|.
T Consensus 23 l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 23 LPNLETLNLSNNP 35 (44)
T ss_dssp CTTSSEEEETSSC
T ss_pred CCCCCEEEecCCC
Confidence 4444444444433
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.09 E-value=2e-05 Score=49.37 Aligned_cols=117 Identities=23% Similarity=0.303 Sum_probs=66.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|+.+.+.. .+. .++...+.++..++.+.+.++ +......+|..+.+++.+.+.+ .........+..+.+++.+.
T Consensus 12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 5788888865 343 678888888889999999875 5555667788898999999977 44435556778899999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 125 (180)
+..+ +.......+.++ +++.+.+.. .+.......|.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 9765 443445567777 899998865 3433334556665554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=2.8e-07 Score=57.59 Aligned_cols=104 Identities=33% Similarity=0.371 Sum_probs=61.7
Q ss_pred ccEEEcccccCCCCCCcc---ccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 29 LESLFLKNNMFHGKIPST---LSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 29 L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
+..++++.|++- ..++. +.....|...++++|.+.. .|..|. ..+.++.+++.+|.+. ..|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555443 22222 2334455566777777663 333333 4456777777777776 456667777777777
Q ss_pred EecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
++..|++. ..|..+..+.++..|+..+|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 77777776 34444444666777777776654
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=3.6e-06 Score=59.38 Aligned_cols=109 Identities=23% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCccEEEcccccCCCC-CCcccc-CCCCccEEEeccccccc--ccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcc
Q 030257 26 LSNLESLFLKNNMFHGK-IPSTLS-NCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 101 (180)
.+.++.+.+.++.|... ....|+ .+..++.+++.+|.++. .....+..+|.+++|+++.|.+.+.+........+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 45566677777766522 112222 46778888888888873 233456778889999998888764332222356788
Q ss_pred cEEEecCCcCCCCcc-ccccCCCCCCeEEcccCc
Q 030257 102 EMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNN 134 (180)
Q Consensus 102 ~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 134 (180)
+.+.+.+..+.-.-. ..+..+|++++++++.|.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 888888777653333 345577888888888874
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.80 E-value=1.3e-05 Score=55.28 Aligned_cols=108 Identities=20% Similarity=0.135 Sum_probs=67.1
Q ss_pred ccCCCCccEEEecccccccccchhhhccCCccEEEeeCC--cCCCCcchhhcCCCcccEEEecCCcCCCCccc---cccC
Q 030257 47 LSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN--QLQGEIPEELGNLAELEMLWLQNNFLTRAIPS---SIFN 121 (180)
Q Consensus 47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~l~~ 121 (180)
.-.+.+++.+.+.++++++. ..+..+++|+.|.++.| ++..-.+.-...+++|+++++++|++.. +. .+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 34456677777777776532 44667888899998888 4432233334456889999999888853 32 3345
Q ss_pred CCCCCeEEcccCcCCCCCC--cccccCCCCccEEEccCC
Q 030257 122 LSSLSNLDLSVNNLTGGII--PSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 122 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l~~n 158 (180)
+.+|..|+++.|..+...- ...+.-+++|..+|-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 6677888888886653111 123455566666655443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00024 Score=52.98 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 61 (180)
.+++.|++++|.+. .+| .+ .++|++|.+.+|.-....|..+ ..+|+.|.+.+|
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45667777777654 455 11 2357777776654333444333 246777777766
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=5.5e-05 Score=52.96 Aligned_cols=87 Identities=26% Similarity=0.465 Sum_probs=45.6
Q ss_pred CCceEEEeeCCeecccCchhhh---hcCCCccEEEcccccCC---C-------CCCccccCCCCccEEEecccccccccc
Q 030257 2 SSLLSIRFTNNTLFGELPPNFC---NHLSNLESLFLKNNMFH---G-------KIPSTLSNCKRLRNISLSLDDFSGTIP 68 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~ 68 (180)
..++.+++++|.+.......+. .+-++|++.++++--.. + .+.+++.+||+++..++++|.+....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567778888776532222222 22455556555543111 0 122345566777777777666554433
Q ss_pred hh----hhccCCccEEEeeCCcCC
Q 030257 69 KE----IGNVTKLIRLYLRGNQLQ 88 (180)
Q Consensus 69 ~~----~~~l~~L~~l~l~~~~~~ 88 (180)
.. ++....+.+|.+.+|.+-
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 32 334456667766666543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=2.1e-06 Score=60.01 Aligned_cols=84 Identities=30% Similarity=0.336 Sum_probs=45.3
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcc-hhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP-EELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l 104 (180)
+.+.+.|+..||.+.+. .....|+.|+.|.++-|.+++. ..+..+.+|+++++..|.+..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44555566666655422 1123566666666666666532 335566666666666666553211 234556666666
Q ss_pred EecCCcCCC
Q 030257 105 WLQNNFLTR 113 (180)
Q Consensus 105 ~l~~~~~~~ 113 (180)
++..|+=.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 666555544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.0018 Score=48.56 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=67.6
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCC-cCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN-QLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l 104 (180)
+.+++.|++++|.+. .+|. --.+|+.|.+.+|.-....|+.+. .+|+.|.+++| .+. ..|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence 788999999999776 4452 123699999998765445565442 57899998887 333 2332 35555
Q ss_pred EecCCcCC--CCccccccC------------------CCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 105 WLQNNFLT--RAIPSSIFN------------------LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 105 ~l~~~~~~--~~~~~~l~~------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
++..+... ..+|..+.. .++|++|++++|... ..+..+ ..+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i--~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI--ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc--cCcccc--cccCcEEEeccc
Confidence 55544321 122222111 135777777776543 123222 246677776554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=1e-05 Score=56.62 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccccc-chhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTI-PKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l 80 (180)
.+.++|++-+|.+.+ ..+...|+.|++|.|+-|.|... ..+..|++|++|++..|.|.... ...+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 356788888888762 45666799999999999998732 44678999999999999987432 2356789999999
Q ss_pred EeeCCcCCCCcch-----hhcCCCcccEEE
Q 030257 81 YLRGNQLQGEIPE-----ELGNLAELEMLW 105 (180)
Q Consensus 81 ~l~~~~~~~~~~~-----~~~~~~~L~~l~ 105 (180)
.+..|.+.+..+. .++.+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998876544332 355678888885
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=9.2e-05 Score=51.21 Aligned_cols=106 Identities=25% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEeccc--ccccccchhhhccCCccEEEeeCCcCCCC-cchhhcCCCccc
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD--DFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAELE 102 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~ 102 (180)
+..|+.+++.+..++.. ..+-.+++|+.|.++.| ++..-+.-....+++|+++.+++|.+... .......+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 55677777766665421 22446788999999988 54433444445669999999999987621 223345667788
Q ss_pred EEEecCCcCCCCcc---ccccCCCCCCeEEcccC
Q 030257 103 MLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVN 133 (180)
Q Consensus 103 ~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 133 (180)
.|++..|..++... ..|.-+++|.+++-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88888887765221 24556677777765443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=0.00019 Score=54.95 Aligned_cols=130 Identities=26% Similarity=0.137 Sum_probs=60.2
Q ss_pred CCCccEEEcccccCCCC--CCccccCCCCccEEEeccc-cccccc----chhhhccCCccEEEeeCCc-CCCCcchhhc-
Q 030257 26 LSNLESLFLKNNMFHGK--IPSTLSNCKRLRNISLSLD-DFSGTI----PKEIGNVTKLIRLYLRGNQ-LQGEIPEELG- 96 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~- 96 (180)
.+.|+.+.+.++..... .......++.|+.++++++ ...... ......+.+++.+++..+. ++......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2233345666666666652 111111 1122334566666666655 4433333322
Q ss_pred CCCcccEEEecCCc-CCCCcc-ccccCCCCCCeEEcccCcC-CCCCCcccccCCCCccEEEc
Q 030257 97 NLAELEMLWLQNNF-LTRAIP-SSIFNLSSLSNLDLSVNNL-TGGIIPSLLGNQSSLQTLYL 155 (180)
Q Consensus 97 ~~~~L~~l~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~l~l 155 (180)
.|++|+.+.+.++. +++... .....++.|++|+++++.. ++..+......+++++.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 25666666665555 343222 2334556666666666643 22222222333444444443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.18 E-value=0.0019 Score=49.49 Aligned_cols=113 Identities=24% Similarity=0.103 Sum_probs=78.1
Q ss_pred CCCCccEEEecccccccc--cchhhhccCCccEEEeeCC-c-CCCC---cchhhcCCCcccEEEecCCc-CCCCcccccc
Q 030257 49 NCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGN-Q-LQGE---IPEELGNLAELEMLWLQNNF-LTRAIPSSIF 120 (180)
Q Consensus 49 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~-~-~~~~---~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~ 120 (180)
.++.++.+.+.++..... .......+++|+.++++++ . .... .......+.+++.++++.+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 468888888888754322 3345667899999999873 2 1111 11233456889999998887 5554443333
Q ss_pred -CCCCCCeEEcccCc-CCCCCCcccccCCCCccEEEccCCccc
Q 030257 121 -NLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 121 -~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
.++.|++|.+..+. +++..+......++.|+.|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 47899999988786 777666667778899999999998654
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.09 E-value=0.0012 Score=48.91 Aligned_cols=171 Identities=19% Similarity=0.085 Sum_probs=93.1
Q ss_pred ceEEEeeCCeeccc-CchhhhhcCCCccEEEcccccCC-CCCCccc-cCCCCccEEEeccccc-ccccchh-hhccCCcc
Q 030257 4 LLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFH-GKIPSTL-SNCKRLRNISLSLDDF-SGTIPKE-IGNVTKLI 78 (180)
Q Consensus 4 L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~-~~~l~~L~ 78 (180)
+.++++..|...++ -...+..++..|+.++.+++... +..-.++ .++++|+.+-+..|+- +..-... -.++++|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 33455555542222 22333445667788888776433 2222222 3577888888888763 1111111 23567788
Q ss_pred EEEeeCCcCCCC--cchhhcCCCcccEEEecCCcC-CCCc----cccccCCCCCCeEEcccCcCCCCCCcccccCCCCcc
Q 030257 79 RLYLRGNQLQGE--IPEELGNLAELEMLWLQNNFL-TRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQ 151 (180)
Q Consensus 79 ~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~-~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 151 (180)
.+++.++..... ..+.-.+++.++.+.++.+.. ++.. ...-.++..+..+-++++..........+..+++|+
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 888777663211 223335677788887775533 2221 112234567778888887543223445677788888
Q ss_pred EEEccCCc-ccCCCChhhhhhccc
Q 030257 152 TLYLSYNQ-LSGPIPSFILCKFSL 174 (180)
Q Consensus 152 ~l~l~~n~-~~~~~~~~~~~~~~~ 174 (180)
.+++.+++ ++....+.+..+.+.
T Consensus 430 ri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 430 RIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred eeeeechhhhhhhhhHHHHhhCcc
Confidence 88888874 443333444444333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0033 Score=26.33 Aligned_cols=19 Identities=47% Similarity=0.536 Sum_probs=11.5
Q ss_pred CccEEEccCCcccCCCChhh
Q 030257 149 SLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 149 ~L~~l~l~~n~~~~~~~~~~ 168 (180)
+|+.|++++|.++ .+|..+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3566777777666 555543
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.32 E-value=0.0046 Score=46.01 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=95.8
Q ss_pred CCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccC-CCCCCccc-cCCCCccEEEecccccccc--cchhhhccCC
Q 030257 2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMF-HGKIPSTL-SNCKRLRNISLSLDDFSGT--IPKEIGNVTK 76 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~ 76 (180)
..|++++.+++...+ .+......+..+|+.+-+.+++. .+.-...+ .+++.|+.+++.++..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 356777777765332 23344456688999999998863 22111112 4688999999998876421 1112235788
Q ss_pred ccEEEeeCCcC-CCCcchhh----cCCCcccEEEecCCcCCC-CccccccCCCCCCeEEcccCc-CCCCCCcccccCCCC
Q 030257 77 LIRLYLRGNQL-QGEIPEEL----GNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSS 149 (180)
Q Consensus 77 L~~l~l~~~~~-~~~~~~~~----~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 149 (180)
++++.++.+.. +......+ ..+..+..+.+.+++... ....-+..++.|+.+++.++. ++...+..+-.++++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99999987753 22211111 234668889998887742 333456678889999998884 554445555566777
Q ss_pred ccEEEcc
Q 030257 150 LQTLYLS 156 (180)
Q Consensus 150 L~~l~l~ 156 (180)
++..-+.
T Consensus 454 i~v~a~~ 460 (483)
T KOG4341|consen 454 IKVHAYF 460 (483)
T ss_pred ceehhhc
Confidence 6665443
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.01 E-value=0.021 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=14.1
Q ss_pred CCCceEEEeeCCeecccCchhhh
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFC 23 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~ 23 (180)
|++|+.|++.+|.+. .+|..+|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456777777777665 5666554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.01 E-value=0.021 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=14.1
Q ss_pred CCCceEEEeeCCeecccCchhhh
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFC 23 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~ 23 (180)
|++|+.|++.+|.+. .+|..+|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456777777777665 5666554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.0041 Score=41.80 Aligned_cols=84 Identities=24% Similarity=0.103 Sum_probs=47.8
Q ss_pred CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCC-Ccccccc-CCCCCCeEEcccC-cCCCCCCcccccCCCCccE
Q 030257 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIF-NLSSLSNLDLSVN-NLTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~ 152 (180)
.++.++-+++.+....-+.+++++.++.+.+.+|..-+ ...+-+. -.++|+.|++++| +|++. -...+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHH
Confidence 45666666666655555556666666777666664421 1111111 3467777777777 46654 3345666677777
Q ss_pred EEccCCcc
Q 030257 153 LYLSYNQL 160 (180)
Q Consensus 153 l~l~~n~~ 160 (180)
|++++=+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 76665443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.58 E-value=0.023 Score=22.10 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=4.9
Q ss_pred CceEEEeeCCee
Q 030257 3 SLLSIRFTNNTL 14 (180)
Q Consensus 3 ~L~~L~l~~~~~ 14 (180)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.98 E-value=0.011 Score=25.21 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=8.7
Q ss_pred CCccEEEccCCcccCCCC
Q 030257 148 SSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 148 ~~L~~l~l~~n~~~~~~~ 165 (180)
++|+.|++++|.+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455666666666554433
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.75 E-value=0.00036 Score=53.43 Aligned_cols=39 Identities=36% Similarity=0.392 Sum_probs=20.6
Q ss_pred CCCCeEEcccCcCCCCC---CcccccCCCCccEEEccCCccc
Q 030257 123 SSLSNLDLSVNNLTGGI---IPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 123 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
++++++++++|.+++.. ....+..++.++.++++.|++.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 45566666666655331 1123344556666666666554
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.013 Score=39.47 Aligned_cols=73 Identities=19% Similarity=0.126 Sum_probs=53.4
Q ss_pred CcccEEEecCCcCCCCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccEEEccCC-cccCCCChhhhhh
Q 030257 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLYLSYN-QLSGPIPSFILCK 171 (180)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~ 171 (180)
..++.++-+++.|.++.-+-+..++.++.|.+.+|. +.|+.+...-...++|+.|++++| .|++.--.++..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 357889999999987777778888999999998884 555544444445679999999999 4665444444433
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.27 E-value=0.0016 Score=50.03 Aligned_cols=168 Identities=23% Similarity=0.157 Sum_probs=102.9
Q ss_pred ceEEEeeCCeecccCchhh---hhcCCCccEEEcccccCCCCCC----ccccCC-CCccEEEecccccccc----cchhh
Q 030257 4 LLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIP----STLSNC-KRLRNISLSLDDFSGT----IPKEI 71 (180)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 71 (180)
+..+.+.+|.+.......+ ....++|+.|++++|.+.+... ..+... ..+++|++..|.+... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566777777764322222 3346788889999998773322 222232 4567777777777632 23345
Q ss_pred hccCCccEEEeeCCcCCCC----cchhhc----CCCcccEEEecCCcCCCCcc----ccccCCCC-CCeEEcccCcCCCC
Q 030257 72 GNVTKLIRLYLRGNQLQGE----IPEELG----NLAELEMLWLQNNFLTRAIP----SSIFNLSS-LSNLDLSVNNLTGG 138 (180)
Q Consensus 72 ~~l~~L~~l~l~~~~~~~~----~~~~~~----~~~~L~~l~l~~~~~~~~~~----~~l~~~~~-L~~L~l~~~~~~~~ 138 (180)
.....++++++..|.+... .+..+. ...+++++.+.+|.++.... ..+...++ +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5567788888888876321 222333 35678889998888763211 23344455 67788988887643
Q ss_pred C---CcccccCC-CCccEEEccCCcccCCCChhhhhh
Q 030257 139 I---IPSLLGNQ-SSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 139 ~---~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
. ....+..+ ..++.+++..|.+.+.-...+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 1 12234444 577999999999987766665443
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.17 E-value=1.3 Score=19.50 Aligned_cols=13 Identities=62% Similarity=0.695 Sum_probs=7.3
Q ss_pred CCCeEEcccCcCC
Q 030257 124 SLSNLDLSVNNLT 136 (180)
Q Consensus 124 ~L~~L~l~~~~~~ 136 (180)
+|++|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555566555554
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.84 E-value=2.5 Score=18.40 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=7.6
Q ss_pred CCCeEEcccCcCC
Q 030257 124 SLSNLDLSVNNLT 136 (180)
Q Consensus 124 ~L~~L~l~~~~~~ 136 (180)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4556666666554
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.30 E-value=3.1 Score=18.13 Aligned_cols=13 Identities=54% Similarity=0.636 Sum_probs=8.4
Q ss_pred CccEEEccCCccc
Q 030257 149 SLQTLYLSYNQLS 161 (180)
Q Consensus 149 ~L~~l~l~~n~~~ 161 (180)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666665
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.76 E-value=2.9 Score=17.85 Aligned_cols=13 Identities=31% Similarity=0.153 Sum_probs=8.8
Q ss_pred CCCccEEEccCCc
Q 030257 147 QSSLQTLYLSYNQ 159 (180)
Q Consensus 147 ~~~L~~l~l~~n~ 159 (180)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777774
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.00 E-value=3.4 Score=32.57 Aligned_cols=11 Identities=45% Similarity=0.377 Sum_probs=4.9
Q ss_pred CCccEEEeeCC
Q 030257 75 TKLIRLYLRGN 85 (180)
Q Consensus 75 ~~L~~l~l~~~ 85 (180)
+.+..|++++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 34444444444
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.38 E-value=0.037 Score=38.41 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEE
Q 030257 50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129 (180)
Q Consensus 50 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 129 (180)
+.....||++.++.. .....++-+..+..++++.+.+. ..|..++....+..++...|.+. ..|..+...++++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344455555555543 23334444555555566655544 33444444444444444444443 3455555566666666
Q ss_pred cccCcCC
Q 030257 130 LSVNNLT 136 (180)
Q Consensus 130 l~~~~~~ 136 (180)
+.++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6555443
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=65.78 E-value=0.16 Score=35.39 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=50.7
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
+...+.|+++.++.. ....-|.-+..+..|+++.+.+. ..|..+.....+..++...|..+ ..|..++..+.++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 666777777776554 33334455566666777776665 45556666666666666666554 3455556666666666
Q ss_pred ecCCcC
Q 030257 106 LQNNFL 111 (180)
Q Consensus 106 l~~~~~ 111 (180)
.-++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 666554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.43 E-value=3.9 Score=32.30 Aligned_cols=12 Identities=50% Similarity=0.573 Sum_probs=6.0
Q ss_pred CCCCCeEEcccC
Q 030257 122 LSSLSNLDLSVN 133 (180)
Q Consensus 122 ~~~L~~L~l~~~ 133 (180)
.|+|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.88 E-value=24 Score=33.94 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=27.3
Q ss_pred EeeCCeecccCchhhhhcCCCccEEEcccccCC
Q 030257 8 RFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH 40 (180)
Q Consensus 8 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 40 (180)
+|++|.+. .++...|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46788887 789999999999999999998765
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.35 E-value=60 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred EecccccccccchhhhccCCccEEEeeCCcC
Q 030257 57 SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL 87 (180)
Q Consensus 57 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 87 (180)
+|++|.+.......|..+.+|++|+|.+|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4678888877777888899999999998875
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=23.29 E-value=51 Score=14.33 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=8.5
Q ss_pred hhhcCCCccEEEcc
Q 030257 22 FCNHLSNLESLFLK 35 (180)
Q Consensus 22 ~~~~l~~L~~L~l~ 35 (180)
++..+|+|+.|+..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 34457777777654
Done!