Query 030257
Match_columns 180
No_of_seqs 141 out of 1869
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.5E-23 5.1E-28 151.1 17.1 167 2-173 127-302 (328)
2 2o6q_A Variable lymphocyte rec 99.9 8.3E-23 2.8E-27 143.4 17.5 158 3-162 38-195 (270)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-23 4E-28 150.7 12.9 142 26-170 124-266 (313)
4 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-23 6.6E-28 149.6 13.9 163 1-167 124-287 (313)
5 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-23 1.8E-27 145.5 15.7 159 2-162 56-215 (285)
6 3m19_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 141.6 16.6 160 2-163 35-194 (251)
7 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-23 1.6E-27 145.7 14.5 168 2-171 32-200 (285)
8 4fcg_A Uncharacterized protein 99.9 7E-23 2.4E-27 147.6 15.4 164 2-171 104-276 (328)
9 3rfs_A Internalin B, repeat mo 99.9 2.2E-22 7.4E-27 141.5 17.2 161 1-165 62-222 (272)
10 3rgz_A Protein brassinosteroid 99.9 9.4E-23 3.2E-27 161.4 17.1 168 2-171 466-703 (768)
11 2o6q_A Variable lymphocyte rec 99.9 2.5E-22 8.6E-27 141.0 17.3 163 1-165 60-222 (270)
12 3rgz_A Protein brassinosteroid 99.9 1E-22 3.5E-27 161.2 16.3 169 2-172 394-562 (768)
13 2z66_A Variable lymphocyte rec 99.9 4E-23 1.4E-27 147.4 12.5 167 2-171 78-246 (306)
14 2o6s_A Variable lymphocyte rec 99.9 1.4E-22 4.7E-27 137.1 12.4 162 2-172 28-189 (208)
15 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.7E-26 136.4 15.8 164 3-171 15-178 (251)
16 3rfs_A Internalin B, repeat mo 99.9 1.7E-21 6E-26 136.8 16.4 165 1-171 40-204 (272)
17 1p9a_G Platelet glycoprotein I 99.9 3.4E-21 1.2E-25 136.5 15.7 163 2-170 31-193 (290)
18 2z66_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 138.9 13.8 164 1-165 100-265 (306)
19 3v47_A TOLL-like receptor 5B a 99.9 3E-21 1E-25 144.4 15.3 40 2-41 129-168 (455)
20 2z62_A TOLL-like receptor 4, v 99.9 1.2E-21 4.1E-26 137.8 12.0 133 3-136 29-162 (276)
21 1wwl_A Monocyte differentiatio 99.9 4.3E-22 1.5E-26 142.5 9.7 164 2-167 95-271 (312)
22 2v9t_B SLIT homolog 2 protein 99.9 4.4E-21 1.5E-25 130.8 13.9 154 5-163 14-167 (220)
23 3zyj_A Leucine-rich repeat-con 99.9 3.6E-21 1.2E-25 143.7 14.2 164 1-168 87-275 (440)
24 3v47_A TOLL-like receptor 5B a 99.9 2.5E-21 8.6E-26 144.9 13.3 163 2-165 212-412 (455)
25 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-21 4.5E-26 151.1 12.0 158 3-162 400-559 (606)
26 2z62_A TOLL-like receptor 4, v 99.9 1.6E-21 5.5E-26 137.2 11.4 165 1-168 51-220 (276)
27 2v70_A SLIT-2, SLIT homolog 2 99.9 7.6E-21 2.6E-25 129.7 14.4 156 5-165 14-170 (220)
28 1p9a_G Platelet glycoprotein I 99.9 8.9E-21 3E-25 134.4 15.2 157 1-163 54-210 (290)
29 3o6n_A APL1; leucine-rich repe 99.9 7.6E-21 2.6E-25 139.8 15.3 134 2-136 45-178 (390)
30 3zyi_A Leucine-rich repeat-con 99.9 4.4E-21 1.5E-25 143.7 14.2 164 1-168 98-286 (452)
31 2id5_A Lingo-1, leucine rich r 99.9 2E-21 6.8E-26 146.3 12.3 164 2-167 32-195 (477)
32 3zyj_A Leucine-rich repeat-con 99.9 1.2E-20 4E-25 140.9 15.2 163 2-168 64-227 (440)
33 4ezg_A Putative uncharacterize 99.9 1.4E-20 4.7E-25 126.3 14.0 151 2-162 44-195 (197)
34 2id5_A Lingo-1, leucine rich r 99.9 1.2E-20 4.2E-25 142.0 14.9 110 2-112 56-165 (477)
35 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 3.9E-26 142.5 9.0 163 2-167 52-216 (353)
36 3zyi_A Leucine-rich repeat-con 99.9 7.9E-21 2.7E-25 142.3 13.7 163 2-168 75-238 (452)
37 2z80_A TOLL-like receptor 2, v 99.9 3.3E-21 1.1E-25 140.1 11.0 134 2-136 100-235 (353)
38 2xwt_C Thyrotropin receptor; s 99.9 6E-21 2E-25 131.7 11.6 151 3-158 32-189 (239)
39 3e6j_A Variable lymphocyte rec 99.9 3.1E-20 1.1E-24 127.4 15.1 155 5-165 22-176 (229)
40 2o6s_A Variable lymphocyte rec 99.9 5.7E-20 2E-24 124.2 16.2 156 5-165 10-165 (208)
41 3vq2_A TLR4, TOLL-like recepto 99.9 9.4E-21 3.2E-25 146.4 13.7 174 1-178 375-550 (606)
42 3oja_B Anopheles plasmodium-re 99.9 2.1E-20 7.1E-25 144.4 15.3 132 3-135 52-183 (597)
43 3o6n_A APL1; leucine-rich repe 99.9 4E-20 1.4E-24 136.0 15.7 68 99-169 248-315 (390)
44 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-20 6.1E-25 145.1 14.4 152 17-171 45-196 (635)
45 4eco_A Uncharacterized protein 99.8 2.8E-21 9.4E-26 150.2 9.6 163 1-168 205-396 (636)
46 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4E-25 145.8 13.1 135 2-136 325-462 (606)
47 1ziw_A TOLL-like receptor 3; i 99.8 2.9E-20 9.9E-25 145.4 14.8 168 2-171 25-194 (680)
48 3oja_B Anopheles plasmodium-re 99.8 4.4E-20 1.5E-24 142.6 15.4 69 98-169 253-321 (597)
49 3t6q_A CD180 antigen; protein- 99.8 3.1E-20 1.1E-24 143.5 14.3 140 26-167 399-542 (606)
50 1xku_A Decorin; proteoglycan, 99.8 6.2E-20 2.1E-24 132.2 14.9 160 3-168 122-283 (330)
51 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-20 1.2E-24 133.7 13.0 162 1-168 77-284 (332)
52 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5E-25 129.7 10.6 161 1-166 54-223 (239)
53 1wwl_A Monocyte differentiatio 99.8 3.3E-20 1.1E-24 132.7 12.7 159 1-166 120-291 (312)
54 4eco_A Uncharacterized protein 99.8 4.3E-21 1.5E-25 149.1 8.4 156 18-178 198-382 (636)
55 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-19 4.1E-24 141.9 16.3 168 1-169 404-605 (680)
56 4ecn_A Leucine-rich repeat pro 99.8 2.5E-20 8.5E-25 148.4 12.5 163 1-169 447-639 (876)
57 2z63_A TOLL-like receptor 4, v 99.8 2.8E-20 9.5E-25 142.7 12.4 162 2-166 373-536 (570)
58 2xot_A Amphoterin-induced prot 99.8 6.8E-20 2.3E-24 133.6 13.0 151 6-162 22-177 (361)
59 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 1E-24 142.5 11.3 165 2-168 28-197 (570)
60 2xot_A Amphoterin-induced prot 99.8 2.5E-20 8.5E-25 135.9 10.3 160 2-163 39-204 (361)
61 2v9t_B SLIT homolog 2 protein 99.8 8.4E-20 2.9E-24 124.5 12.1 134 2-136 32-165 (220)
62 1xku_A Decorin; proteoglycan, 99.8 2.7E-19 9.1E-24 128.9 15.2 165 2-171 52-239 (330)
63 2z81_A CD282 antigen, TOLL-lik 99.8 1.8E-20 6.3E-25 143.2 9.2 156 2-159 26-183 (549)
64 4g8a_A TOLL-like receptor 4; l 99.8 5.7E-20 2E-24 142.2 11.9 162 2-165 52-218 (635)
65 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-19 8.8E-24 129.1 14.5 107 2-112 54-160 (332)
66 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-19 4.2E-24 123.7 12.2 136 2-137 32-167 (220)
67 1h6u_A Internalin H; cell adhe 99.8 7.2E-19 2.5E-23 125.6 16.3 147 2-162 63-209 (308)
68 4ecn_A Leucine-rich repeat pro 99.8 3.4E-20 1.2E-24 147.7 10.4 155 18-178 440-624 (876)
69 2z7x_B TOLL-like receptor 1, v 99.8 3.8E-19 1.3E-23 135.2 15.4 139 24-167 321-462 (520)
70 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-19 4.8E-24 144.6 12.4 161 2-164 24-190 (844)
71 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-19 4.6E-24 138.4 11.8 166 2-171 5-171 (549)
72 3j0a_A TOLL-like receptor 5; m 99.8 3.3E-19 1.1E-23 142.5 14.2 169 1-170 47-226 (844)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.9E-19 2.4E-23 135.0 15.3 139 24-167 350-491 (562)
74 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.2E-23 123.5 15.1 146 2-161 68-213 (291)
75 4glp_A Monocyte differentiatio 99.8 6.6E-20 2.3E-24 131.0 8.5 132 26-162 144-286 (310)
76 3e6j_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 120.1 13.4 134 2-137 40-173 (229)
77 4fmz_A Internalin; leucine ric 99.8 2.4E-18 8.1E-23 124.6 15.6 131 26-165 198-328 (347)
78 1h6u_A Internalin H; cell adhe 99.8 2.6E-18 9E-23 122.7 15.5 150 2-165 41-190 (308)
79 2z7x_B TOLL-like receptor 1, v 99.8 4.4E-19 1.5E-23 134.9 12.0 159 1-165 323-485 (520)
80 3oja_A Leucine-rich immune mol 99.8 4.6E-19 1.6E-23 133.9 10.9 132 2-136 34-182 (487)
81 4glp_A Monocyte differentiatio 99.8 4.6E-19 1.6E-23 126.7 10.3 154 1-162 144-308 (310)
82 3o53_A Protein LRIM1, AGAP0063 99.8 3E-19 1E-23 128.0 9.3 140 26-170 119-260 (317)
83 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-19 1.3E-23 127.5 9.7 159 2-168 34-233 (317)
84 1h6t_A Internalin B; cell adhe 99.8 4.3E-18 1.5E-22 120.6 14.9 147 2-162 46-192 (291)
85 1m9s_A Internalin B; cell inva 99.8 5.6E-18 1.9E-22 130.7 16.2 149 1-163 64-212 (605)
86 1xeu_A Internalin C; cellular 99.8 2.2E-18 7.4E-23 120.5 12.5 148 1-163 40-187 (263)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.5E-18 5.1E-23 133.2 12.0 159 1-165 352-514 (562)
88 3oja_A Leucine-rich immune mol 99.8 7.4E-19 2.5E-23 132.7 9.7 131 26-161 119-250 (487)
89 2ell_A Acidic leucine-rich nuc 99.8 3.3E-18 1.1E-22 111.8 11.5 137 26-166 23-164 (168)
90 2ast_B S-phase kinase-associat 99.8 1.8E-19 6.2E-24 129.9 6.0 157 2-159 93-258 (336)
91 4fmz_A Internalin; leucine ric 99.8 1.6E-17 5.5E-22 120.3 16.1 156 2-171 155-310 (347)
92 2ast_B S-phase kinase-associat 99.8 5.9E-20 2E-24 132.5 2.5 174 2-178 70-252 (336)
93 2ell_A Acidic leucine-rich nuc 99.8 5.2E-18 1.8E-22 110.9 11.6 132 2-136 24-160 (168)
94 1o6v_A Internalin A; bacterial 99.8 3.2E-17 1.1E-21 123.2 16.9 128 26-164 242-369 (466)
95 4ezg_A Putative uncharacterize 99.8 2.3E-17 7.8E-22 110.6 12.7 130 1-137 65-195 (197)
96 1m9s_A Internalin B; cell inva 99.8 2.2E-17 7.5E-22 127.4 14.0 149 1-163 42-190 (605)
97 1w8a_A SLIT protein; signaling 99.7 2.6E-17 8.7E-22 109.9 12.4 129 5-137 11-140 (192)
98 1w8a_A SLIT protein; signaling 99.7 9.6E-18 3.3E-22 112.0 10.3 132 30-165 11-143 (192)
99 1o6v_A Internalin A; bacterial 99.7 6.2E-17 2.1E-21 121.6 15.4 148 1-162 242-389 (466)
100 2je0_A Acidic leucine-rich nuc 99.7 5.9E-18 2E-22 108.5 8.2 129 26-157 16-149 (149)
101 2wfh_A SLIT homolog 2 protein 99.7 4.4E-17 1.5E-21 108.8 11.7 127 5-136 13-139 (193)
102 2je0_A Acidic leucine-rich nuc 99.7 1.2E-17 4.2E-22 107.0 8.2 126 3-131 18-148 (149)
103 3goz_A Leucine-rich repeat-con 99.7 3.3E-18 1.1E-22 124.7 5.4 109 3-112 23-151 (362)
104 2ca6_A RAN GTPase-activating p 99.7 7.2E-19 2.4E-23 129.2 1.4 38 26-63 93-134 (386)
105 2o6r_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 104.0 13.2 128 5-136 10-137 (177)
106 2o6r_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 103.4 13.2 133 29-165 9-141 (177)
107 2wfh_A SLIT homolog 2 protein 99.7 3.1E-16 1E-20 104.7 13.4 130 30-164 13-142 (193)
108 2ca6_A RAN GTPase-activating p 99.7 3.9E-18 1.3E-22 125.3 4.5 112 51-162 159-288 (386)
109 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.6E-22 115.1 8.3 145 4-163 21-165 (263)
110 3goz_A Leucine-rich repeat-con 99.7 8.7E-18 3E-22 122.5 6.0 166 3-168 52-245 (362)
111 4ay9_X Follicle-stimulating ho 99.7 9.7E-17 3.3E-21 116.5 10.8 162 2-166 30-220 (350)
112 4ay9_X Follicle-stimulating ho 99.7 2.1E-16 7.2E-21 114.7 12.0 122 5-130 12-135 (350)
113 3bz5_A Internalin-J, INLJ; leu 99.7 1.3E-15 4.6E-20 114.1 15.9 148 1-165 84-250 (457)
114 3cvr_A Invasion plasmid antige 99.7 2.5E-16 8.5E-21 120.6 11.9 147 2-170 80-252 (571)
115 3cvr_A Invasion plasmid antige 99.7 1.6E-15 5.6E-20 116.1 15.7 134 3-161 60-193 (571)
116 3bz5_A Internalin-J, INLJ; leu 99.7 2.1E-15 7.2E-20 113.1 15.8 142 1-162 63-226 (457)
117 4b8c_D Glucose-repressible alc 99.7 7.3E-17 2.5E-21 127.0 8.2 123 42-169 215-337 (727)
118 1a9n_A U2A', U2A'; complex (nu 99.7 2.9E-16 9.9E-21 103.3 9.1 130 25-161 17-153 (176)
119 1dce_A Protein (RAB geranylger 99.7 3.5E-18 1.2E-22 131.0 -1.2 109 52-165 442-550 (567)
120 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.6E-22 129.6 3.4 145 18-167 215-360 (727)
121 1z7x_W Ribonuclease inhibitor; 99.7 5.6E-18 1.9E-22 126.9 -0.4 161 2-163 199-413 (461)
122 1z7x_W Ribonuclease inhibitor; 99.7 2.8E-17 9.5E-22 123.1 2.9 63 2-64 56-126 (461)
123 1a9n_A U2A', U2A'; complex (nu 99.6 4.8E-16 1.7E-20 102.3 8.2 130 1-136 18-153 (176)
124 3sb4_A Hypothetical leucine ri 99.6 4.3E-15 1.5E-19 106.9 10.9 173 1-178 48-326 (329)
125 1ds9_A Outer arm dynein; leuci 99.6 1.5E-17 5.2E-22 111.5 -2.7 153 3-164 19-188 (198)
126 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.3E-19 112.3 12.8 65 99-169 241-305 (622)
127 3g06_A SSPH2 (leucine-rich rep 99.6 1.1E-13 3.9E-18 107.0 16.0 64 99-172 221-284 (622)
128 1jl5_A Outer protein YOPM; leu 99.6 1E-13 3.5E-18 103.9 15.1 77 28-112 132-208 (454)
129 1jl5_A Outer protein YOPM; leu 99.6 9.4E-14 3.2E-18 104.1 14.8 140 2-161 131-270 (454)
130 1dce_A Protein (RAB geranylger 99.6 3E-14 1E-18 109.3 11.7 123 28-155 442-567 (567)
131 3g39_A Variable lymphocyte rec 99.6 2.5E-14 8.4E-19 93.6 9.6 104 5-112 12-115 (170)
132 3ogk_B Coronatine-insensitive 99.5 1.7E-15 5.9E-20 116.6 3.7 169 1-169 341-534 (592)
133 3g39_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 91.1 11.2 105 29-136 11-115 (170)
134 2r9u_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 92.1 10.0 86 51-136 33-118 (174)
135 3un9_A NLR family member X1; l 99.5 2.4E-16 8.2E-21 115.2 -2.7 169 2-170 72-261 (372)
136 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.7E-18 89.6 11.2 105 5-113 15-119 (174)
137 3ogk_B Coronatine-insensitive 99.5 1.7E-14 5.9E-19 111.1 5.8 84 4-87 140-232 (592)
138 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.2E-21 106.3 -5.1 137 25-166 16-158 (198)
139 3sb4_A Hypothetical leucine ri 99.5 2.1E-13 7E-18 98.2 9.8 102 50-154 225-327 (329)
140 2p1m_B Transport inhibitor res 99.4 7.2E-14 2.4E-18 107.7 4.4 38 121-158 287-324 (594)
141 2p1m_B Transport inhibitor res 99.4 1.9E-14 6.4E-19 110.9 -0.6 89 72-161 429-519 (594)
142 3un9_A NLR family member X1; l 99.4 9.6E-14 3.3E-18 101.4 0.8 160 2-162 101-284 (372)
143 2ifg_A High affinity nerve gro 99.3 9.9E-12 3.4E-16 89.9 10.5 104 6-113 12-117 (347)
144 4fdw_A Leucine rich hypothetic 99.3 1.6E-11 5.5E-16 90.6 11.7 164 1-171 179-368 (401)
145 2ifg_A High affinity nerve gro 99.3 8.7E-12 3E-16 90.2 9.2 103 31-136 12-116 (347)
146 2ra8_A Uncharacterized protein 99.2 3.2E-11 1.1E-15 87.7 5.6 166 1-169 138-328 (362)
147 4fdw_A Leucine rich hypothetic 99.1 1E-09 3.6E-14 80.9 10.4 66 17-84 170-235 (401)
148 1io0_A Tropomodulin; LRR prote 98.9 5.1E-10 1.8E-14 74.0 2.2 115 47-161 32-164 (185)
149 1io0_A Tropomodulin; LRR prote 98.8 1.2E-09 4E-14 72.3 2.8 115 22-136 31-164 (185)
150 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.7E-14 78.0 3.5 152 1-159 171-341 (362)
151 3e4g_A ATP synthase subunit S, 98.8 2.4E-09 8.3E-14 69.7 2.0 83 76-159 62-150 (176)
152 3e4g_A ATP synthase subunit S, 98.7 1.3E-08 4.4E-13 66.2 5.2 87 51-137 61-154 (176)
153 4fs7_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 63.9 10.0 147 2-158 230-376 (394)
154 4gt6_A Cell surface protein; l 98.4 2.7E-06 9.1E-11 62.6 10.4 109 45-158 259-367 (394)
155 3rw6_A Nuclear RNA export fact 98.4 4.9E-07 1.7E-11 62.9 5.6 81 72-154 167-257 (267)
156 3rw6_A Nuclear RNA export fact 98.4 7.4E-07 2.5E-11 62.0 6.1 69 96-165 167-237 (267)
157 4fs7_A Uncharacterized protein 98.3 7E-06 2.4E-10 60.3 11.1 125 26-158 229-353 (394)
158 4h09_A Hypothetical leucine ri 98.3 5.9E-06 2E-10 60.3 10.2 133 21-158 211-343 (379)
159 4h09_A Hypothetical leucine ri 98.3 1.2E-05 4.1E-10 58.7 11.8 114 17-133 230-343 (379)
160 4gt6_A Cell surface protein; l 98.3 3.6E-06 1.2E-10 61.9 8.9 135 17-159 255-389 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1.4E-05 4.8E-10 52.9 2.1 112 49-160 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2.8E-05 9.6E-10 51.5 3.5 112 24-135 38-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0019 6.5E-08 39.8 5.3 34 53-86 33-66 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0018 6.2E-08 39.9 3.6 56 6-64 12-68 (130)
165 2lz0_A Uncharacterized protein 87.3 2 7E-05 24.7 5.4 43 17-60 10-52 (100)
166 2lz0_A Uncharacterized protein 84.5 1.7 5.7E-05 25.1 4.1 44 40-84 9-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.5e-23 Score=151.06 Aligned_cols=167 Identities=22% Similarity=0.261 Sum_probs=115.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccC---------CCCccEEEecccccccccchhhh
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN---------CKRLRNISLSLDDFSGTIPKEIG 72 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~ 72 (180)
++|++|++++|.+. .+|..+.. +++|++|++++|.+.+..|..+.. +++|+.|++++|.+. ..|..+.
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~ 203 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence 45556666666554 45544433 666666666665555455544432 666666666666666 5566677
Q ss_pred ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257 73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 73 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (180)
.+++|++|++++|.+.. .|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. ++..+..+++|+.
T Consensus 204 ~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEK 281 (328)
T ss_dssp GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTCCE
T ss_pred CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCCCE
Confidence 77788888888877763 455677778888888888877777777777888888888888776653 6666778888888
Q ss_pred EEccCCcccCCCChhhhhhcc
Q 030257 153 LYLSYNQLSGPIPSFILCKFS 173 (180)
Q Consensus 153 l~l~~n~~~~~~~~~~~~~~~ 173 (180)
|++++|.+.+.+|..+..+..
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCT
T ss_pred EeCCCCCchhhccHHHhhccC
Confidence 888888888888888776654
No 2
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.3e-23 Score=143.42 Aligned_cols=158 Identities=24% Similarity=0.271 Sum_probs=95.1
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
++++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 4666666666665 455544455666777777666666444444556666666666666666554455566666666666
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCCcCCc
Confidence 66666544444556666666666666666554444555666666666666666532 23345555666666666666654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.2e-23 Score=150.69 Aligned_cols=142 Identities=24% Similarity=0.381 Sum_probs=58.1
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccC-CccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT-KLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
+++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..++ +|+++++++|.+....|..+..++ |+.+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 33444444444433333333333444444444444443333333333333 344444443333322233332222 3333
Q ss_pred EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhh
Q 030257 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC 170 (180)
Q Consensus 105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 170 (180)
++++|.+.+..+..+..+++|++|++++|.+++. . ..+..+++|+.|++++|.+++.+|..+..
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-G-GGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-c-CcccccCCCCEEECcCCcccCcCChHHhc
Confidence 3333333333334444445555555555544421 1 12344455555555555555445544433
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.9e-23 Score=149.58 Aligned_cols=163 Identities=28% Similarity=0.461 Sum_probs=145.5
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..++ +|+.|++++|.+....|..+..+. |++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 578999999999998767766655 99999999999999888899999998 999999999999878888888887 999
Q ss_pred EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
|++++|.+....+..+..+++|+.+++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCc
Confidence 99999998877888899999999999999999865555 77889999999999999864 78888999999999999999
Q ss_pred ccCCCChh
Q 030257 160 LSGPIPSF 167 (180)
Q Consensus 160 ~~~~~~~~ 167 (180)
+++.+|..
T Consensus 280 l~~~ip~~ 287 (313)
T 1ogq_A 280 LCGEIPQG 287 (313)
T ss_dssp EEEECCCS
T ss_pred ccccCCCC
Confidence 99888876
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=5.2e-23 Score=145.47 Aligned_cols=159 Identities=26% Similarity=0.312 Sum_probs=75.9
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++|++|++++|.+. .++...+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 34444444444443 2222222334445555554443 333334444445555555555555444444444455555555
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-CHhHccCcccccEeeCCCCcC
Confidence 5555554433333344455555555555555433333444555555555555555432 344455555666666666655
Q ss_pred cC
Q 030257 161 SG 162 (180)
Q Consensus 161 ~~ 162 (180)
.+
T Consensus 214 ~~ 215 (285)
T 1ozn_A 214 SA 215 (285)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=9.9e-23 Score=141.61 Aligned_cols=160 Identities=23% Similarity=0.255 Sum_probs=134.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 46888999999887 45555566699999999999999877777788999999999999999877777788999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCcee
Confidence 999998865556678889999999999999876666788899999999999998843 4456788899999999999987
Q ss_pred CC
Q 030257 162 GP 163 (180)
Q Consensus 162 ~~ 163 (180)
..
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=4.8e-23 Score=145.66 Aligned_cols=168 Identities=22% Similarity=0.232 Sum_probs=146.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc-cccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD-FSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l 80 (180)
+++++|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 57899999999987 5666666779999999999999987778889999999999999997 776667889999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++.+|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcc
Confidence 9999999876677888999999999999999876667788999999999999998742 344578899999999999999
Q ss_pred cCCCChhhhhh
Q 030257 161 SGPIPSFILCK 171 (180)
Q Consensus 161 ~~~~~~~~~~~ 171 (180)
.+..|..+...
T Consensus 190 ~~~~~~~~~~l 200 (285)
T 1ozn_A 190 AHVHPHAFRDL 200 (285)
T ss_dssp CEECTTTTTTC
T ss_pred cccCHhHccCc
Confidence 98778777654
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=7e-23 Score=147.55 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=109.9
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh---------
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG--------- 72 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------- 72 (180)
++|++|++++|.+. .+|..+.. +++|++|++++|.+. ..|..+..+++|++|++++|......|..+.
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 45666666666665 55554433 666666666666666 5566666666666666666655444444443
Q ss_pred ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257 73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 73 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 152 (180)
.+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+.+. .+..+..+++|+.
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKR 257 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCE
Confidence 2667777777777666 456667777778888888877774 455677777888888888776653 6666777788888
Q ss_pred EEccCCcccCCCChhhhhh
Q 030257 153 LYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 153 l~l~~n~~~~~~~~~~~~~ 171 (180)
|++++|.+.+.+|..+..+
T Consensus 258 L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp EECTTCTTCCBCCTTGGGC
T ss_pred EECCCCCchhhcchhhhcC
Confidence 8888887777777776554
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.2e-22 Score=141.45 Aligned_cols=161 Identities=22% Similarity=0.248 Sum_probs=112.6
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+.+ ++ .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 4667777777777653 32 33447777777777777775555566777777777777777776555567777777888
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCc
Confidence 8777777655555566777778888877777765556667777788888887777643 444566777778888877777
Q ss_pred cCCCC
Q 030257 161 SGPIP 165 (180)
Q Consensus 161 ~~~~~ 165 (180)
.+..|
T Consensus 218 ~~~~~ 222 (272)
T 3rfs_A 218 DCTCP 222 (272)
T ss_dssp CCCTT
T ss_pred cccCc
Confidence 65554
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=9.4e-23 Score=161.39 Aligned_cols=168 Identities=33% Similarity=0.516 Sum_probs=91.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++.+|.+.+.+|..+. ++++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|++++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 4455555555555544444333 255566666666555555555555556666666666655555555555555555555
Q ss_pred eeCCcCCCCcchh-------------------------------------------------------------------
Q 030257 82 LRGNQLQGEIPEE------------------------------------------------------------------- 94 (180)
Q Consensus 82 l~~~~~~~~~~~~------------------------------------------------------------------- 94 (180)
+++|.+....|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 5555443222221
Q ss_pred ---hcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257 95 ---LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 95 ---~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
+..+++|+.+++++|.+++.+|..+..++.|+.|++++|.+++. +|..++.+++|+.||+++|.+++.+|..+..+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 11234455555666655555555556666666666666666543 55555666666666666666666666555443
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.5e-22 Score=140.98 Aligned_cols=163 Identities=25% Similarity=0.298 Sum_probs=143.3
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .++..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 60 l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 578999999999987 7888888889999999999999986666778899999999999999987777788999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCe
Confidence 9999999866556688999999999999999877677788999999999999999843 445678899999999999998
Q ss_pred cCCCC
Q 030257 161 SGPIP 165 (180)
Q Consensus 161 ~~~~~ 165 (180)
....+
T Consensus 218 ~c~c~ 222 (270)
T 2o6q_A 218 DCTCN 222 (270)
T ss_dssp CCSSS
T ss_pred eCCCc
Confidence 75543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1e-22 Score=161.17 Aligned_cols=169 Identities=39% Similarity=0.554 Sum_probs=142.9
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++.+|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|++++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 46788888888877666666544 88899999999888878888888889999999999988877888888899999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+.+|.+....|..+..+++|+.+++++|.+.+..|..+..+++|++|++++|.+++. .|..+..+++|+.|++++|.++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCCccC
Confidence 999988877888888889999999999999888888888899999999999988754 6777888999999999999999
Q ss_pred CCCChhhhhhc
Q 030257 162 GPIPSFILCKF 172 (180)
Q Consensus 162 ~~~~~~~~~~~ 172 (180)
+.+|..++...
T Consensus 552 g~ip~~~~~~~ 562 (768)
T 3rgz_A 552 GTIPAAMFKQS 562 (768)
T ss_dssp SBCCGGGGTTT
T ss_pred CcCChHHhccc
Confidence 88888776543
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4e-23 Score=147.39 Aligned_cols=167 Identities=23% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++|++|++++|.+. .++..+. ++++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 34455555554443 2333322 25555555555555543222 345555566666666655554444555555666666
Q ss_pred EeeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
++.+|.+.. ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCC
Confidence 666655543 2344555556666666666665544455555556666666666655532 22334555566666666666
Q ss_pred ccCCCChhhhhh
Q 030257 160 LSGPIPSFILCK 171 (180)
Q Consensus 160 ~~~~~~~~~~~~ 171 (180)
+.+..+..+...
T Consensus 235 l~~~~~~~~~~~ 246 (306)
T 2z66_A 235 IMTSKKQELQHF 246 (306)
T ss_dssp CCBCSSSSCCCC
T ss_pred CcccCHHHHHhh
Confidence 655555544443
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-22 Score=137.14 Aligned_cols=162 Identities=22% Similarity=0.203 Sum_probs=107.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.+. .++..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35677777777765 45555555577777777777777654445566677777777777777655555566777777777
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.. .+++++.|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCC
Confidence 77777665444456667777777777777765555556667777777777775542 2456677777777777
Q ss_pred CCCChhhhhhc
Q 030257 162 GPIPSFILCKF 172 (180)
Q Consensus 162 ~~~~~~~~~~~ 172 (180)
+.+|.+++.+.
T Consensus 179 g~ip~~~~~l~ 189 (208)
T 2o6s_A 179 GVVRNSAGSVA 189 (208)
T ss_dssp TTBBCTTSSBC
T ss_pred ceeeccCcccc
Confidence 77776665544
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-21 Score=136.37 Aligned_cols=164 Identities=22% Similarity=0.204 Sum_probs=141.7
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
+.+.++++++.+. .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4577889888887 6787663 58999999999999888888999999999999999999887888999999999999
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCcCCc
Confidence 99999866667788999999999999999977677788999999999999999843 44468889999999999999997
Q ss_pred CCChhhhhh
Q 030257 163 PIPSFILCK 171 (180)
Q Consensus 163 ~~~~~~~~~ 171 (180)
..+..+..+
T Consensus 170 ~~~~~~~~l 178 (251)
T 3m19_A 170 VPHGAFDRL 178 (251)
T ss_dssp CCTTTTTTC
T ss_pred cCHHHHhCC
Confidence 666555444
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.7e-21 Score=136.83 Aligned_cols=165 Identities=25% Similarity=0.242 Sum_probs=139.9
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|+.|.+.++.+. .++ . +..+++|++|++++|.+.+ . ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-G-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-ccc-c-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 367899999999876 343 3 4459999999999999874 3 468899999999999999987777778999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcC
Confidence 9999999866666788999999999999999877777788999999999999999853 455678899999999999999
Q ss_pred cCCCChhhhhh
Q 030257 161 SGPIPSFILCK 171 (180)
Q Consensus 161 ~~~~~~~~~~~ 171 (180)
.+..+..+..+
T Consensus 194 ~~~~~~~~~~l 204 (272)
T 3rfs_A 194 KSVPDGVFDRL 204 (272)
T ss_dssp SCCCTTTTTTC
T ss_pred CccCHHHHhCC
Confidence 97666555444
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.4e-21 Score=136.52 Aligned_cols=163 Identities=24% Similarity=0.239 Sum_probs=106.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+... +. ...+++|++|++++|.+. ..|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 35667777777765 34444445577777777777776632 22 256677777777777766 4455566777777777
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCC
Confidence 777777655555677777777777777777765556666777777777777777632 3344566777777777777776
Q ss_pred CCCChhhhh
Q 030257 162 GPIPSFILC 170 (180)
Q Consensus 162 ~~~~~~~~~ 170 (180)
.+|..+..
T Consensus 186 -~ip~~~~~ 193 (290)
T 1p9a_G 186 -TIPKGFFG 193 (290)
T ss_dssp -CCCTTTTT
T ss_pred -ccChhhcc
Confidence 45555443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.7e-21 Score=138.93 Aligned_cols=164 Identities=21% Similarity=0.196 Sum_probs=141.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc-ccchhhhccCCccE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIR 79 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 79 (180)
+++|++|++++|.+.+..+...+.++++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 57899999999999843333566679999999999999987788889999999999999999875 57788899999999
Q ss_pred EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCC-CCccEEEccCC
Q 030257 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYN 158 (180)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~l~l~~n 158 (180)
|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+ ++|+.|++++|
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSSCCCCCTTCCEEECTTC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHHHHhhhccCCEEEccCC
Confidence 99999999876678889999999999999999876667788999999999999999864 55666776 48999999999
Q ss_pred cccCCCC
Q 030257 159 QLSGPIP 165 (180)
Q Consensus 159 ~~~~~~~ 165 (180)
++....+
T Consensus 259 ~~~~~c~ 265 (306)
T 2z66_A 259 DFACTCE 265 (306)
T ss_dssp CEECSGG
T ss_pred CeecccC
Confidence 9976543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3e-21 Score=144.45 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=23.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG 41 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 41 (180)
++|++|++++|.+.+..|..++.++++|++|++++|.+.+
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 4566666666666544444444556666666666665543
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.2e-21 Score=137.85 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=84.4
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
++++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4677777777765 444444445777777777777766555556666777777777777766555556666666777776
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
.+|.+....+..+..+++|+.+++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 66666544343456666666666666666542 3555666666666666666554
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=4.3e-22 Score=142.49 Aligned_cols=164 Identities=23% Similarity=0.242 Sum_probs=85.1
Q ss_pred CCceEEEeeCCeecccCchhhh-hcCCCccEEEcccccCCCCCCccccCC-----CCccEEEecccccccccchhhhccC
Q 030257 2 SSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIGNVT 75 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~ 75 (180)
++|++|++++|.+.+.+|..++ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+....+..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4566667766666655555542 4466666666666666543 4444444 5666666666666555545555666
Q ss_pred CccEEEeeCCcCCCC--cchhh--cCCCcccEEEecCCcCCCC--cc-ccccCCCCCCeEEcccCcCCCCCCcccccCCC
Q 030257 76 KLIRLYLRGNQLQGE--IPEEL--GNLAELEMLWLQNNFLTRA--IP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS 148 (180)
Q Consensus 76 ~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~~--~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (180)
+|++|++++|.+... .+..+ ..+++|+.|++++|.+.+. .+ ..+..+++|++|++++|.+++......+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 666666666654321 12222 4455555555555555421 11 22234455555555555554321112233345
Q ss_pred CccEEEccCCcccCCCChh
Q 030257 149 SLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 149 ~L~~l~l~~n~~~~~~~~~ 167 (180)
+|+.|++++|.++ .+|..
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp TCCEEECTTSCCS-SCCSS
T ss_pred CCCEEECCCCccC-hhhhh
Confidence 5555555555554 34433
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=4.4e-21 Score=130.82 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=131.7
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.+++.++.+. .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 35677777776 6776553 6899999999999876677889999999999999999988788999999999999999
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEECS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcCCC
Confidence 999865555678899999999999999988788899999999999999999853 455678899999999999998653
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.6e-21 Score=143.68 Aligned_cols=164 Identities=22% Similarity=0.226 Sum_probs=101.1
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 87 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 467778888887776 4555555667778888888777775555567777777777777777664444445555555555
Q ss_pred EeeC-------------------------CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257 81 YLRG-------------------------NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 81 ~l~~-------------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 135 (180)
++.+ |.+.. .| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 5544 44331 12 234445555555555555544455566666666666666666
Q ss_pred CCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257 136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
++. .+..+..+++|+.|++++|.+++..+..+
T Consensus 244 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 244 QVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CEE-CTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred eEE-ChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 532 34456667777777777777775444443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.5e-21 Score=144.86 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=139.3
Q ss_pred CCceEEEeeCCeecccCchhhhhc--------------------------------------CCCccEEEcccccCCCCC
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNH--------------------------------------LSNLESLFLKNNMFHGKI 43 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------------l~~L~~L~l~~~~~~~~~ 43 (180)
++|++|++++|.+.+..+..+... .++|++|++++|.+.+..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 568888888888765555444321 257889999999888777
Q ss_pred CccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCC
Q 030257 44 PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS 123 (180)
Q Consensus 44 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 123 (180)
+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 88899999999999999999977788899999999999999999866778889999999999999999877788899999
Q ss_pred CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
+|++|++++|.+++. .+..+..+++|+.|++++|+++...|
T Consensus 372 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999853 44567889999999999999998887
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.3e-21 Score=151.11 Aligned_cols=158 Identities=23% Similarity=0.180 Sum_probs=71.0
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc-ccchhhhccCCccEEE
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRLY 81 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~ 81 (180)
+|++|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 344444444444322222233334444444444444443344444444444444444444443 2334444445555555
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCC-CccEEEccCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS-SLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~ 160 (180)
+++|.+....|..+..+++|+.+++++|.+.+..|..+..+++|++|++++|.++ .++..+..++ +|+.+++++|++
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhhcccCcEEEccCCCc
Confidence 5555444333444444455555555555554444444444555555555555444 1333333333 355555555554
Q ss_pred cC
Q 030257 161 SG 162 (180)
Q Consensus 161 ~~ 162 (180)
..
T Consensus 558 ~c 559 (606)
T 3vq2_A 558 AC 559 (606)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.6e-21 Score=137.21 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=121.3
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|
T Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp CTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred ccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 467888888888876 5565555668888888888888876666778888888888888888876555567788888888
Q ss_pred EeeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCccccccCCCCCC----eEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257 81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS----NLDLSVNNLTGGIIPSLLGNQSSLQTLYL 155 (180)
Q Consensus 81 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 155 (180)
++++|.+... .|..+..+++|+.+++++|.+.+..+..+..+++++ .+++++|.+++ ++.......+|+.|++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELAL 207 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEEC
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEEC
Confidence 8888887653 467788888888888888888765555665555555 78888888773 3333334457888888
Q ss_pred cCCcccCCCChhh
Q 030257 156 SYNQLSGPIPSFI 168 (180)
Q Consensus 156 ~~n~~~~~~~~~~ 168 (180)
++|.+++..+..+
T Consensus 208 ~~n~l~~~~~~~~ 220 (276)
T 2z62_A 208 DTNQLKSVPDGIF 220 (276)
T ss_dssp CSSCCSCCCTTTT
T ss_pred CCCceeecCHhHh
Confidence 8888875444333
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=7.6e-21 Score=129.66 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=134.8
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 83 (180)
+.++++++.+. .+|..+. ..+++|++++|.+....+ ..|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47888888886 6787663 456899999999985533 457899999999999999997777789999999999999
Q ss_pred CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999877777799999999999999999987788899999999999999999853 567788899999999999998866
Q ss_pred CC
Q 030257 164 IP 165 (180)
Q Consensus 164 ~~ 165 (180)
.+
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 55
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=8.9e-21 Score=134.39 Aligned_cols=157 Identities=25% Similarity=0.273 Sum_probs=137.8
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .++.. ..+++|++|++++|.+. ..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 54 l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 54 YTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp CTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 578999999999987 45443 46999999999999998 777888999999999999999997777889999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++..+.....|+.+++++|++
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCc
Confidence 99999998666667888999999999999998766677888999999999999998 4677777888999999999998
Q ss_pred cCC
Q 030257 161 SGP 163 (180)
Q Consensus 161 ~~~ 163 (180)
...
T Consensus 208 ~C~ 210 (290)
T 1p9a_G 208 LCN 210 (290)
T ss_dssp CCS
T ss_pred cCc
Confidence 643
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=7.6e-21 Score=139.83 Aligned_cols=134 Identities=24% Similarity=0.277 Sum_probs=82.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.+++.++.+. .+|..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666665 56666666666677777766666644455666666666666666666655555566666666666
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
+.+|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 6666665333333455666666666666665544555555666666666665544
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=4.4e-21 Score=143.65 Aligned_cols=164 Identities=23% Similarity=0.249 Sum_probs=98.6
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 98 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 456777777777776 4454555557777777777777765555556667777777777776664444444444444444
Q ss_pred Ee-------------------------eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257 81 YL-------------------------RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 81 ~l-------------------------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 135 (180)
++ ++|.+.. .| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 44 4444432 11 234445555566666655554455666666677777776666
Q ss_pred CCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257 136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
++. .+..+..+++|+.|++++|.+++..+..+
T Consensus 255 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 255 SLI-ERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CEE-CTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ceE-CHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 532 34556667777777777777764444333
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=146.32 Aligned_cols=164 Identities=20% Similarity=0.164 Sum_probs=112.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45777888887776 44444555578888888888777766677777778888888887777755555667777777887
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc
Confidence 777777655566677777777777777777665566667777777777777776632 3344556666666666666665
Q ss_pred CCCChh
Q 030257 162 GPIPSF 167 (180)
Q Consensus 162 ~~~~~~ 167 (180)
+..+..
T Consensus 190 ~~~~~~ 195 (477)
T 2id5_A 190 AIRDYS 195 (477)
T ss_dssp EECTTC
T ss_pred EeChhh
Confidence 444333
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=140.91 Aligned_cols=163 Identities=24% Similarity=0.229 Sum_probs=121.7
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46899999999987 56666667799999999999999877778899999999999999999877777899999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCc-cccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
+++|.+....+..+..+++|+.|++++|...+.+ +..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCcc
Confidence 9999987555556777788888888774433333 3356666667777666666652 23 244555566666666655
Q ss_pred cCCCChhh
Q 030257 161 SGPIPSFI 168 (180)
Q Consensus 161 ~~~~~~~~ 168 (180)
++..+..+
T Consensus 220 ~~~~~~~~ 227 (440)
T 3zyj_A 220 SAIRPGSF 227 (440)
T ss_dssp CEECTTTT
T ss_pred CccChhhh
Confidence 54444443
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.86 E-value=1.4e-20 Score=126.29 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=125.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|+.|++++|.+. .++ . +..+++|++|++++|.+. ....+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 57899999999987 666 3 455999999999999765 334688899999999999999876778889999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCc-CCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
+++|.+....+..+..+++|+.|++++|. +.+ .+ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCccc
Confidence 99999886678888999999999999998 654 44 67889999999999999985 33 677889999999999987
Q ss_pred cC
Q 030257 161 SG 162 (180)
Q Consensus 161 ~~ 162 (180)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=142.00 Aligned_cols=110 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+.+ ++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 56 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 456666666665552 3233333466666666666655533334455555555555555555544444455555555555
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 112 (180)
+.+|.+....+..+..+++|+.|++++|.+.
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 5555444333334444444444444444444
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=142.47 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=112.7
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 46778888888776 45655555688888888888877766666777788888888888877755555577778888888
Q ss_pred eeCCcCCCCcc-hhhcCCCcccEEEecCCc-CCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 82 LRGNQLQGEIP-EELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 82 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
+++|.+..... ..+..+++|+.+++++|. +.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCc
Confidence 88877764333 356677788888887773 4444455667777777777777777642 45556666677777777776
Q ss_pred ccCCCChh
Q 030257 160 LSGPIPSF 167 (180)
Q Consensus 160 ~~~~~~~~ 167 (180)
+. .++..
T Consensus 210 l~-~~~~~ 216 (353)
T 2z80_A 210 HI-LLLEI 216 (353)
T ss_dssp ST-THHHH
T ss_pred cc-cchhh
Confidence 64 34443
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.9e-21 Score=142.27 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=116.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 47899999999987 45555666799999999999999977778899999999999999999877777789999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
+++|.+....+..+..+++|+.|++++|...+.++ ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcC
Confidence 99999875545566777777777777643322222 345556666666666665552 22 234445555555555555
Q ss_pred cCCCChhh
Q 030257 161 SGPIPSFI 168 (180)
Q Consensus 161 ~~~~~~~~ 168 (180)
.+..|..+
T Consensus 231 ~~~~~~~~ 238 (452)
T 3zyi_A 231 PEIRPGSF 238 (452)
T ss_dssp SEECGGGG
T ss_pred cccCcccc
Confidence 44444433
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=140.07 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=70.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEeccc-ccccccchhhhccCCccE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLD-DFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~ 79 (180)
++|++|++++|.+. .++...+.++++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 45666666666655 4555544556666666666666553222 24556666666666665 244344445556666666
Q ss_pred EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
+++++|.+....+..+..+++|+.+++++|.+.......+..+++|+.|++++|.++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 666666655444555555555555555555443211112222344444444444443
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6e-21 Score=131.67 Aligned_cols=151 Identities=17% Similarity=0.299 Sum_probs=87.0
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCCCCccccCCCCccEEEecc-cccccccchhhhccCCccEE
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l 80 (180)
++++|++++|.+. .++...+.++++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|+++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5677777777765 4555555557777777777775 5544445666777777777776 66665555566666777777
Q ss_pred EeeCCcCCCCcchhhcCCCccc---EEEecCC-cCCCCccccccCCCCCC-eEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257 81 YLRGNQLQGEIPEELGNLAELE---MLWLQNN-FLTRAIPSSIFNLSSLS-NLDLSVNNLTGGIIPSLLGNQSSLQTLYL 155 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 155 (180)
++.+|.+.. .|. +..+++|+ .+++++| .+.+..+..+..+++|+ .+++++|.++. ++......++|+.|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCCCCCCEEEc
Confidence 777666553 333 44555555 6666665 55443334455555555 55555555541 2221111244555555
Q ss_pred cCC
Q 030257 156 SYN 158 (180)
Q Consensus 156 ~~n 158 (180)
++|
T Consensus 187 ~~n 189 (239)
T 2xwt_C 187 NKN 189 (239)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=3.1e-20 Score=127.37 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=131.9
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.++++++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45777777765 677665 37899999999999987788899999999999999999866667788999999999999
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 164 (180)
|.++...+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9998666666888999999999999998 5777888999999999999999843 4456788999999999999988665
Q ss_pred C
Q 030257 165 P 165 (180)
Q Consensus 165 ~ 165 (180)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.7e-20 Score=124.21 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=131.6
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.+++.++.+. .+|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 35666666665 566555 46899999999999866666788999999999999999877666788999999999999
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 164 (180)
|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecCC
Confidence 999866566688999999999999999877677788999999999999999853 4455788999999999999988766
Q ss_pred C
Q 030257 165 P 165 (180)
Q Consensus 165 ~ 165 (180)
+
T Consensus 165 ~ 165 (208)
T 2o6s_A 165 P 165 (208)
T ss_dssp T
T ss_pred C
Confidence 5
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=9.4e-21 Score=146.37 Aligned_cols=174 Identities=20% Similarity=0.164 Sum_probs=149.6
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
+++|++|++++|.+. .+|.. +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 375 ~~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CSCCCEEECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred CCcccEeECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 578999999999987 56644 4559999999999999986666 67889999999999999998888888999999999
Q ss_pred EEeeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 80 LYLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 80 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
+++.+|.+... .|..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTS
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCC
Confidence 99999998753 577889999999999999999987788899999999999999999863 5778899999999999999
Q ss_pred cccCCCChhhhhhccccccc
Q 030257 159 QLSGPIPSFILCKFSLLDNI 178 (180)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l 178 (180)
.++ .+|..+....+.++.+
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEE
T ss_pred cCc-ccCHhHhhhcccCcEE
Confidence 998 5776666655445444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-20 Score=144.38 Aligned_cols=132 Identities=23% Similarity=0.272 Sum_probs=63.9
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
+++.+++.++.+. .+|..++.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4445555555443 444444444555555555555554444444555555555555555554444444445555555555
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 135 (180)
++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 55554432222334445555555555555444444444444444444444443
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=4e-20 Score=136.02 Aligned_cols=68 Identities=22% Similarity=0.155 Sum_probs=34.1
Q ss_pred CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
++|+.+++++|.+.+..+..+..+++|++|++++|.+++ ++..+..+++|+.|++++|.+. .+|..+.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 344444444444443334444555555555555555542 3333445566666666666665 3444433
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.8e-20 Score=145.08 Aligned_cols=152 Identities=20% Similarity=0.184 Sum_probs=112.8
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 96 (180)
.+|.++ -+++++|++++|.+....+.+|.++++|++|++++|.+....++.|.++++|++|++++|.++...+..+.
T Consensus 45 ~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 455443 13678888888888766666788888888888888888766667788888888888888887755556677
Q ss_pred CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257 97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
++++|+.|++++|.+.+..+..+.++++|++|++++|.++....+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 888888888888888765556677888888888888877654456667777888888888888876666655443
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2.8e-21 Score=150.20 Aligned_cols=163 Identities=22% Similarity=0.337 Sum_probs=128.5
Q ss_pred CCCceEEEeeCCeeccc-----------------Cchhhh-hcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257 1 MSSLLSIRFTNNTLFGE-----------------LPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 62 (180)
+++|++|++++|.+.+. +|..+. .++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 57899999999998864 777775 249999999999999998999999999999999999998
Q ss_pred -ccc-ccchhhhcc------CCccEEEeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEccc
Q 030257 63 -FSG-TIPKEIGNV------TKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132 (180)
Q Consensus 63 -~~~-~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 132 (180)
++. ..|..+..+ ++|++|++.+|.+. ..|. .+..+++|+.+++++|.+.+.+| .+..+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 775 677777776 89999999999988 6777 78899999999999998886666 666666666677766
Q ss_pred CcCCCCCCcccccCCCC-ccEEEccCCcccCCCChhh
Q 030257 133 NNLTGGIIPSLLGNQSS-LQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 133 ~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~ 168 (180)
|.++ .++..+..+++ |+.|++++|.+. .+|..+
T Consensus 363 N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 363 NQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred Cccc--cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 6665 34555555555 666666666665 455443
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.2e-20 Score=145.84 Aligned_cols=135 Identities=23% Similarity=0.219 Sum_probs=63.9
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC--CccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI--PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
++|++|++.+|.+.+.++...+.++++|++|++++|.+.... +..+..+++|++|++++|.+....+..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 344444444444433334433334555555555555444222 334455555555555555554444444555555555
Q ss_pred EEeeCCcCCCCcch-hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 80 LYLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 80 l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
+++.+|.+....+. .+..+++|+.+++++|.+.+..+..+..+++|++|++++|.++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 55555544332222 2444555555555555554444444444555555555555443
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.9e-20 Score=145.38 Aligned_cols=168 Identities=25% Similarity=0.206 Sum_probs=142.6
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.+. .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999987 56666666799999999999999988888899999999999999999866666799999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccc--cCCCCccEEEccCCc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL--GNQSSLQTLYLSYNQ 159 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~n~ 159 (180)
+.+|.+....+..+..+++|+.+++++|.+.+..+..+.++++|++|++++|.+++. .+..+ ..+++|+.|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCc
Confidence 999998866667889999999999999999888788888999999999999998753 33333 356899999999999
Q ss_pred ccCCCChhhhhh
Q 030257 160 LSGPIPSFILCK 171 (180)
Q Consensus 160 ~~~~~~~~~~~~ 171 (180)
+.+..|..+..+
T Consensus 183 l~~~~~~~~~~l 194 (680)
T 1ziw_A 183 IKEFSPGCFHAI 194 (680)
T ss_dssp CCCBCTTGGGGS
T ss_pred ccccChhhhhhh
Confidence 988777766544
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=4.4e-20 Score=142.59 Aligned_cols=69 Identities=22% Similarity=0.153 Sum_probs=36.8
Q ss_pred CCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.+. .+|..+.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 3444444555554444444455555556666665555542 3444445566666666666666 3554443
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3.1e-20 Score=143.47 Aligned_cols=140 Identities=25% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCccEEEcccccCCCCCCc-cccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCC---cchhhcCCCcc
Q 030257 26 LSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE---IPEELGNLAEL 101 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~~~L 101 (180)
+++|++|++++|.+....+. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 44444444444444322222 234444444444444444433344444444555555554444321 11234444455
Q ss_pred cEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257 102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 102 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..++.| .|++++|.+++..|..
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG-GGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcC-ChhHhCccccc-EEECcCCcccccCHhh
Confidence 5555555555444444445555555555555555432 34444455555 5555555555444433
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=6.2e-20 Score=132.20 Aligned_cols=160 Identities=23% Similarity=0.297 Sum_probs=95.2
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--CCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+|++|++++|.+. .++...+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.. .|..+ .++|+++
T Consensus 122 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L 197 (330)
T 1xku_A 122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197 (330)
T ss_dssp TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEE
T ss_pred cccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEE
Confidence 3444555444444 3344444456666666666665542 344455566666666666665542 22221 1456666
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++..+..+++|+.|++++|.+
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcC
Confidence 66666665444556667777777777777776555556666777777777777766 3555666677777777777777
Q ss_pred cCCCChhh
Q 030257 161 SGPIPSFI 168 (180)
Q Consensus 161 ~~~~~~~~ 168 (180)
++..+..+
T Consensus 276 ~~~~~~~f 283 (330)
T 1xku_A 276 SAIGSNDF 283 (330)
T ss_dssp CCCCTTSS
T ss_pred CccChhhc
Confidence 65444443
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.4e-20 Score=133.67 Aligned_cols=162 Identities=21% Similarity=0.272 Sum_probs=88.5
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+.+ ++...+.++++|++|++++|.+. ..|..+. ++|++|++++|.+....+..+..+++|+++
T Consensus 77 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 77 LQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 3567777777777663 33333344777777777776655 3332222 444444444444443333334444444444
Q ss_pred EeeCC----------------------------------------------cCCCCcchhhcCCCcccEEEecCCcCCCC
Q 030257 81 YLRGN----------------------------------------------QLQGEIPEELGNLAELEMLWLQNNFLTRA 114 (180)
Q Consensus 81 ~l~~~----------------------------------------------~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 114 (180)
++.+| .+....+..+..+++|+.+++++|.+.+.
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 44444 33322333455555666666666666555
Q ss_pred ccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257 115 IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
.+..+..+++|++|++++|.++ .++..+..+++|+.|++++|.+++..+..+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred ChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 4555666666666666666665 355556666667777777776665444433
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.5e-20 Score=129.72 Aligned_cols=161 Identities=18% Similarity=0.150 Sum_probs=132.1
Q ss_pred CCCceEEEeeCCe-ecccCchhhhhcCCCccEEEccc-ccCCCCCCccccCCCCccEEEecccccccccchhhhccCCcc
Q 030257 1 MSSLLSIRFTNNT-LFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78 (180)
Q Consensus 1 l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 78 (180)
+++|++|++++|. +. .++...+.++++|++|++++ |.+....+..|..+++|++|++++|.+.. .|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 5789999999997 65 67777777799999999998 88886666788999999999999999885 454 77888887
Q ss_pred ---EEEeeCC-cCCCCcchhhcCCCccc-EEEecCCcCCCCccccccCCCCCCeEEcccCc-CCCCCCcccccCC-CCcc
Q 030257 79 ---RLYLRGN-QLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQ-SSLQ 151 (180)
Q Consensus 79 ---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~ 151 (180)
++++++| .+....+..+..+++|+ .+++++|.+....+..+.. ++|++|++++|. +++ ..+..+..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCc
Confidence 9999999 88765566788999999 9999999998433344444 899999999995 873 245567788 9999
Q ss_pred EEEccCCcccCCCCh
Q 030257 152 TLYLSYNQLSGPIPS 166 (180)
Q Consensus 152 ~l~l~~n~~~~~~~~ 166 (180)
.|++++|.+++..+.
T Consensus 209 ~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 209 LLDVSQTSVTALPSK 223 (239)
T ss_dssp EEECTTCCCCCCCCT
T ss_pred EEECCCCccccCChh
Confidence 999999999854433
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=3.3e-20 Score=132.74 Aligned_cols=159 Identities=23% Similarity=0.189 Sum_probs=128.5
Q ss_pred CCCceEEEeeCCeecccCchhhhhcC-----CCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhh--
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHL-----SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEI-- 71 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-- 71 (180)
+++|++|++++|.+.+. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 47899999999999854 64443 35 8999999999999977778999999999999999986533 23334
Q ss_pred hccCCccEEEeeCCcCCCC--cc-hhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCC
Q 030257 72 GNVTKLIRLYLRGNQLQGE--IP-EELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ 147 (180)
Q Consensus 72 ~~l~~L~~l~l~~~~~~~~--~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 147 (180)
..+++|++|++++|.+... .+ ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ .++..+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--
Confidence 7889999999999998732 12 334678999999999999987664 45667899999999999998 3666555
Q ss_pred CCccEEEccCCcccCCCCh
Q 030257 148 SSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 148 ~~L~~l~l~~n~~~~~~~~ 166 (180)
++|+.|++++|.+++. |.
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC
T ss_pred CCceEEECCCCCCCCC-hh
Confidence 7999999999999865 54
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=4.3e-21 Score=149.11 Aligned_cols=156 Identities=21% Similarity=0.394 Sum_probs=132.9
Q ss_pred CchhhhhcCCCccEEEcccccCCCC-----------------CCcccc--CCCCccEEEecccccccccchhhhccCCcc
Q 030257 18 LPPNFCNHLSNLESLFLKNNMFHGK-----------------IPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78 (180)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 78 (180)
+|..+. ++++|++|++++|.+.+. .|..+. .+++|++|++++|.+....|..+.++++|+
T Consensus 198 ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 666554 499999999999999864 888888 999999999999998888899999999999
Q ss_pred EEEeeCCc-CCC-CcchhhcCC------CcccEEEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcccccCCC
Q 030257 79 RLYLRGNQ-LQG-EIPEELGNL------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS 148 (180)
Q Consensus 79 ~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (180)
+|++++|. +++ ..|..+..+ ++|+.+++++|.+. .+|. .+..+++|++|++++|.+++. ++ .+..++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCC
Confidence 99999998 776 577777665 89999999999998 6787 899999999999999999854 56 778889
Q ss_pred CccEEEccCCcccCCCChhhhhhccccccc
Q 030257 149 SLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178 (180)
Q Consensus 149 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l 178 (180)
+|+.|++++|.+. .+|..+..+...++.+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 9999999999998 7888776665524433
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.2e-19 Score=141.92 Aligned_cols=168 Identities=24% Similarity=0.247 Sum_probs=104.8
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--------------------------CCCccccCCCCcc
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--------------------------KIPSTLSNCKRLR 54 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------------~~~~~~~~l~~L~ 54 (180)
+++|+.|++++|.+.+.++...+.++++|++|++++|.+.. ..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 35677777777776655555555556666666666665432 3445556666677
Q ss_pred EEEecccccccccchhhhccCCccEEEeeCCcCCCCcc--------hhhcCCCcccEEEecCCcCCCCccccccCCCCCC
Q 030257 55 NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP--------EELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126 (180)
Q Consensus 55 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 126 (180)
.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+.+++++|.+....+..+..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 77777766665555556667777777777766543211 1245666777777777777644344567777777
Q ss_pred eEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
+|++++|.+++ ..+..+..+++|+.|++++|.+++..+..+.
T Consensus 564 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 564 IIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred eeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 77777777763 2334456677777777777777765554443
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=2.5e-20 Score=148.45 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=133.7
Q ss_pred CCCceEEEeeCCeecc-----------------cCchhh-hhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257 1 MSSLLSIRFTNNTLFG-----------------ELPPNF-CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 62 (180)
|++|+.|++++|.+.+ .+|..+ +.++++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999886 277776 3459999999999999888899999999999999999997
Q ss_pred -ccc-ccchhhhccC-------CccEEEeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257 63 -FSG-TIPKEIGNVT-------KLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (180)
Q Consensus 63 -~~~-~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 131 (180)
+.. ..|..+..+. +|++|++++|.+. ..|. .+..+++|+.|++++|.+. .+| .+..+++|+.|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 765 5676666555 8999999999888 6777 7888999999999999887 566 77888888888888
Q ss_pred cCcCCCCCCcccccCCCC-ccEEEccCCcccCCCChhhh
Q 030257 132 VNNLTGGIIPSLLGNQSS-LQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~ 169 (180)
+|.+. .++..+..+++ |+.|++++|.+. .+|..+.
T Consensus 604 ~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 604 YNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp SSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred CCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 88887 36666777777 888888888877 5665544
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=142.67 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=113.6
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++|++|++++|.+. .++.. +.++++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 373 ~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp SCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 45555666555554 23333 3346667777777666654433 356677778888888777776666777778888888
Q ss_pred EeeCCcCC-CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 81 YLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 81 ~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
++.+|.+. ...|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|+
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCc
Confidence 88888765 34566677788888888888888766677777888888888888887753 44567778888888888888
Q ss_pred ccCCCCh
Q 030257 160 LSGPIPS 166 (180)
Q Consensus 160 ~~~~~~~ 166 (180)
+++..|.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 8777664
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=6.8e-20 Score=133.58 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=84.7
Q ss_pred EEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
.++++++.+. .+|..+. +.++.|++++|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4555555554 4554432 2355666666666544444444 566666666666666655555566666666666666
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc-cc---cCCCCccEEEccCCcc
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS-LL---GNQSSLQTLYLSYNQL 160 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~---~~~~~L~~l~l~~n~~ 160 (180)
|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ++. .+ ..+++|+.|++++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCC
Confidence 66554444445566666666666666655445556666666666666666653 222 22 3455666666666666
Q ss_pred cC
Q 030257 161 SG 162 (180)
Q Consensus 161 ~~ 162 (180)
.+
T Consensus 176 ~~ 177 (361)
T 2xot_A 176 KK 177 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=142.54 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=114.9
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35777888777776 44444445577888888888777765666777778888888888777766666777788888888
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCC-CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCc----cEEEcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSL----QTLYLS 156 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~ 156 (180)
+.+|.+....+..+..+++|+.|++++|.+.+ ..|..+.++++|++|++++|.+++. .+..+..+++| ..++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-cHHHccchhccchhhhhcccC
Confidence 88777764444456777788888888877765 3567777777888888888777642 34445555555 677777
Q ss_pred CCcccCCCChhh
Q 030257 157 YNQLSGPIPSFI 168 (180)
Q Consensus 157 ~n~~~~~~~~~~ 168 (180)
+|.+.+..+..+
T Consensus 186 ~n~l~~~~~~~~ 197 (570)
T 2z63_A 186 LNPMNFIQPGAF 197 (570)
T ss_dssp TCCCCEECTTTT
T ss_pred CCCceecCHHHh
Confidence 777775555443
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.5e-20 Score=135.87 Aligned_cols=160 Identities=25% Similarity=0.253 Sum_probs=134.8
Q ss_pred CCceEEEeeCCeecccCchhhhh-cCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+.++.|++++|.+. .++...+. ++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 45889999999997 56666665 79999999999999997777889999999999999999987777789999999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccc---cCCCCCCeEEcccCcCCCCCCcccccCCCC--ccEEEc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTGGIIPSLLGNQSS--LQTLYL 155 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~l~l 155 (180)
++.+|.+....+..+..+++|+.|++++|.+.+.....+ ..+++|+.|++++|.++.. ....+..++. ++.|++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-CHHHHHHSCHHHHTTEEC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-CHHHhhhccHhhcceEEe
Confidence 999999987777889999999999999999986555555 5689999999999999842 3345666665 488999
Q ss_pred cCCcccCC
Q 030257 156 SYNQLSGP 163 (180)
Q Consensus 156 ~~n~~~~~ 163 (180)
.+|++...
T Consensus 197 ~~N~~~C~ 204 (361)
T 2xot_A 197 HNNPLECD 204 (361)
T ss_dssp CSSCEECC
T ss_pred cCCCccCC
Confidence 99998643
No 61
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.4e-20 Score=124.49 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=121.6
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 47899999999987 67776777799999999999999977789999999999999999999977667789999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999999777888999999999999999999877778899999999999999875
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.7e-19 Score=128.87 Aligned_cols=165 Identities=21% Similarity=0.259 Sum_probs=100.6
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|.+.. .|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEE
Confidence 46778888888776 4555555568888888888888876667777888888888888777663 222221 4555555
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCC--CccccccCCC---------------------CCCeEEcccCcCCCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AIPSSIFNLS---------------------SLSNLDLSVNNLTGG 138 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~---------------------~L~~L~l~~~~~~~~ 138 (180)
+.+|.+....+..+..+++|+.+++++|.+.. ..+..+..++ +|++|++++|.+++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence 55555554344445555555555555555432 2233333444 455555555555432
Q ss_pred CCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257 139 IIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 139 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
.+..+..+++|+.|++++|.+.+..+..+...
T Consensus 208 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 208 -DAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp -CTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred -CHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 34456677777888888777776555555443
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.8e-20 Score=143.17 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.+.+ ++...+.++++|++|++++|.+.+..+.+|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 357777777777663 3333344577777777777777766666677777777777777777766556677777777777
Q ss_pred eeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 82 LRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 82 l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
+++|.+... .+..+..+++|+.+++++|...+..+ ..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCc
Confidence 777776542 34456677777777777776433333 4566677777777777766542 33444444444444443333
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=5.7e-20 Score=142.25 Aligned_cols=162 Identities=20% Similarity=0.163 Sum_probs=134.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++++|++++|.++ .++...+.++++|++|++++|.+....+.+|.++++|++|++++|.+....++.|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 47899999999997 67777777799999999999999977778899999999999999999877778899999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCcccccCCC----CccEEEcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS----SLQTLYLS 156 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~l~l~ 156 (180)
+.+|.++...+..++.+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++. .+..+..+. ....++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc-ccccccchhhhhhhhhhhhcc
Confidence 999999866566789999999999999999763 567788899999999999998743 333333222 34577888
Q ss_pred CCcccCCCC
Q 030257 157 YNQLSGPIP 165 (180)
Q Consensus 157 ~n~~~~~~~ 165 (180)
.|.+....+
T Consensus 210 ~n~l~~i~~ 218 (635)
T 4g8a_A 210 LNPMNFIQP 218 (635)
T ss_dssp TCCCCEECT
T ss_pred cCcccccCc
Confidence 887764433
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.6e-19 Score=129.08 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=89.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++++.|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+.. .|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE
Confidence 57899999999987 5666556679999999999999997778899999999999999999884 444333 7999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 112 (180)
+.+|.+....+..+..+++|+.+++++|.+.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 9999988665666888899999998888774
No 66
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=123.66 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=122.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+.+++|++++|.+.+..+..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 35789999999998544667777799999999999999977777899999999999999999988888899999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 137 (180)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99999987778889999999999999999998778899999999999999998763
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=7.2e-19 Score=125.58 Aligned_cols=147 Identities=24% Similarity=0.437 Sum_probs=78.3
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .++. +.++++|++|++++|.+.. . ..+..+++|+.|++++|.+... + .+..+++|++|+
T Consensus 63 ~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence 45566666666554 3333 3346666666666665542 2 2355566666666666655532 1 255556666666
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+.
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccC
Confidence 66665543211 4555566666666665553222 4555566666666665552 222 445556666666666555
Q ss_pred C
Q 030257 162 G 162 (180)
Q Consensus 162 ~ 162 (180)
+
T Consensus 209 ~ 209 (308)
T 1h6u_A 209 D 209 (308)
T ss_dssp B
T ss_pred c
Confidence 3
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=3.4e-20 Score=147.66 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=131.7
Q ss_pred CchhhhhcCCCccEEEcccccCCC-----------------CCCcccc--CCCCccEEEecccccccccchhhhccCCcc
Q 030257 18 LPPNFCNHLSNLESLFLKNNMFHG-----------------KIPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78 (180)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 78 (180)
+|..+. ++++|++|++++|.+.+ ..|..+. .+++|+.|++++|.+....|..+.++++|+
T Consensus 440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 666554 49999999999999986 2788877 999999999999998888899999999999
Q ss_pred EEEeeCCc-CCC-CcchhhcCC-------CcccEEEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcccccCC
Q 030257 79 RLYLRGNQ-LQG-EIPEELGNL-------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ 147 (180)
Q Consensus 79 ~l~l~~~~-~~~-~~~~~~~~~-------~~L~~l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 147 (180)
+|++++|. ++. ..|..+..+ ++|+.|++++|.+. .+|. .+..+++|+.|++++|.++ .++ .+..+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCC
Confidence 99999998 775 566655544 49999999999998 7787 8999999999999999998 466 78899
Q ss_pred CCccEEEccCCcccCCCChhhhhhccccccc
Q 030257 148 SSLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178 (180)
Q Consensus 148 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l 178 (180)
++|+.|++++|.+. .+|..+..+...++.|
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 99999999999999 7888777665424443
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.8e-19 Score=135.20 Aligned_cols=139 Identities=21% Similarity=0.275 Sum_probs=92.6
Q ss_pred hcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc--ccchhhhccCCccEEEeeCCcCCCCcch-hhcCCCc
Q 030257 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAE 100 (180)
Q Consensus 24 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~ 100 (180)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..|..+..+++|++|++++|.+....|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 346777778887777776667777777888888888877764 3345677777888888887777653443 3566677
Q ss_pred ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
|+.+++++|.+++..+..+. ++|++|++++|.++ .++..+..+++|+.|++++|.++ .+|..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 77777777776554444332 56777777777666 35555556677777777777766 34443
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=144.60 Aligned_cols=161 Identities=20% Similarity=0.164 Sum_probs=102.2
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC-CccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++++.|++++|.+.+ ++...+.++++|++|++++|...... +.+|.++++|++|++++|.+....|..+.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 567777887777763 33333445777777777777444333 5667777777777777777776667777777777777
Q ss_pred EeeCCcCCCCcchh--hcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCC--CCccEEEc
Q 030257 81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ--SSLQTLYL 155 (180)
Q Consensus 81 ~l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l 155 (180)
++++|.+....+.. +..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.+++. .+..+..+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEEC
Confidence 77777766544443 6677777777777777765443 4567777777777777766542 23333222 34444444
Q ss_pred cCCcccCCC
Q 030257 156 SYNQLSGPI 164 (180)
Q Consensus 156 ~~n~~~~~~ 164 (180)
++|.+.+..
T Consensus 182 ~~n~l~~~~ 190 (844)
T 3j0a_A 182 AANSLYSRV 190 (844)
T ss_dssp CCSBSCCCC
T ss_pred CCCcccccc
Confidence 444444333
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.4e-19 Score=138.39 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=140.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+.....+.+++.++ .+|..++ ++|++|++++|.+.+..+..|..+++|++|++++|.+....++.+..+++|++|+
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 34445667777776 7887663 6899999999999877788899999999999999999977778899999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
+++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|...+...+..+..+++|+.|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999999877777799999999999999999863 4578889999999999999844333345688899999999999999
Q ss_pred cCCCChhhhhh
Q 030257 161 SGPIPSFILCK 171 (180)
Q Consensus 161 ~~~~~~~~~~~ 171 (180)
.+..|..+..+
T Consensus 161 ~~~~~~~l~~l 171 (549)
T 2z81_A 161 RNYQSQSLKSI 171 (549)
T ss_dssp CEECTTTTTTC
T ss_pred cccChhhhhcc
Confidence 98888776654
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=142.47 Aligned_cols=169 Identities=20% Similarity=0.178 Sum_probs=142.1
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchh--hhccCCcc
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE--IGNVTKLI 78 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~ 78 (180)
+++|++|++++|...+.+++..+.++++|++|++++|.+....|..|..+++|++|++++|.+....+.. +..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999997666776777778999999999999999888999999999999999999998655554 88999999
Q ss_pred EEEeeCCcCCCCcc-hhhcCCCcccEEEecCCcCCCCccccccCC--CCCCeEEcccCcCCCCCCcccccCCC------C
Q 030257 79 RLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIFNL--SSLSNLDLSVNNLTGGIIPSLLGNQS------S 149 (180)
Q Consensus 79 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~ 149 (180)
+|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+.+. .+..+..+. .
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC-CCCCCCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc-cccchhhcCCccccCc
Confidence 99999999876544 578999999999999999988777777766 8999999999998754 444444444 3
Q ss_pred ccEEEccCCcccCCCChhhhh
Q 030257 150 LQTLYLSYNQLSGPIPSFILC 170 (180)
Q Consensus 150 L~~l~l~~n~~~~~~~~~~~~ 170 (180)
|+.|++++|.+.+..+..+..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGG
T ss_pred eeEEecCCCcCchhHHHHHHh
Confidence 999999999988777776654
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=6.9e-19 Score=135.01 Aligned_cols=139 Identities=23% Similarity=0.260 Sum_probs=93.9
Q ss_pred hcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhhhccCCccEEEeeCCcCCCCcch-hhcCCCc
Q 030257 24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAE 100 (180)
Q Consensus 24 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~ 100 (180)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|+++++++|.+....|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3467788888888887766777777888888888888877642 234567778888888888877653343 4566677
Q ss_pred ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 167 (180)
|+.+++++|.+++..+..+. ++|+.|++++|.++ .++..+..+++|+.|++++|.++ .+|..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 77777777777654443332 56777777777766 35554556677777777777776 34443
No 74
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.2e-18 Score=123.46 Aligned_cols=146 Identities=27% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .++. +.++++|++|++++|.+.. . ..+..+++|++|++++|.+... ..+..+++|++|+
T Consensus 68 ~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence 44555555555544 2222 3335555555555555442 1 2244555555555555555432 2344555555555
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEE
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCccc
Confidence 555555422 344555555555555555554322 4555556666666665552 22 2455556666666666554
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=6.6e-20 Score=131.03 Aligned_cols=132 Identities=21% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--c--chhhhccCCccEEEeeCCcCCCCcch----hhcC
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--I--PKEIGNVTKLIRLYLRGNQLQGEIPE----ELGN 97 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~ 97 (180)
+++|++|++++|.+....+..+..+++|++|++++|.+... . +..+..+++|++|++++|.++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 44444444444444433334444455555555555443211 0 0112344445555555554431 111 1234
Q ss_pred CCcccEEEecCCcCCCCccccccCC---CCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257 98 LAELEMLWLQNNFLTRAIPSSIFNL---SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
+++|+.|++++|.+.+..|..+..+ ++|++|++++|.++ .++..+. ++|+.|++++|.+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCC
Confidence 4556666666666655444443333 46666666666655 2333332 466666666666654
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8.8e-19 Score=120.13 Aligned_cols=134 Identities=22% Similarity=0.282 Sum_probs=118.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 57999999999998 45556666699999999999999866667788999999999999999977777789999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 137 (180)
+++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999998 567888899999999999999987666788899999999999998864
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=2.4e-18 Score=124.62 Aligned_cols=131 Identities=27% Similarity=0.391 Sum_probs=77.8
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
+++|+.+++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+++++++|.+... ..+..+++|+.++
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence 4444444444444332111 4556666666666666653322 56666677777766665532 3456666777777
Q ss_pred ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
+++|.+.+. ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++++..|
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCc-ChhHhhccccCCEEEccCCccccccC
Confidence 777766543 3456667777777777776643 44556667777777777777775544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.6e-18 Score=122.67 Aligned_cols=150 Identities=23% Similarity=0.341 Sum_probs=126.0
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++.++.+. .++ . +..+++|++|++++|.+.+. +. +..+++|++|++++|.+... ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 57999999999887 455 3 45599999999999998844 33 88999999999999998743 4688999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ .+. +..+++|+.|++++|.+.
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccC
Confidence 999998743 3 48899999999999999986433 7889999999999999984 333 788999999999999998
Q ss_pred CCCC
Q 030257 162 GPIP 165 (180)
Q Consensus 162 ~~~~ 165 (180)
+..+
T Consensus 187 ~~~~ 190 (308)
T 1h6u_A 187 DISP 190 (308)
T ss_dssp CCGG
T ss_pred cChh
Confidence 6443
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=134.86 Aligned_cols=159 Identities=28% Similarity=0.436 Sum_probs=132.8
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--CCCccccCCCCccEEEecccccccccch-hhhccCCc
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTKL 77 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L 77 (180)
+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+ ..|..+..+++|++|++++|.+....|. .+..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4689999999999986566555 459999999999999985 4556788999999999999999863444 57888999
Q ss_pred cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc-cccCCCCccEEEcc
Q 030257 78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS-LLGNQSSLQTLYLS 156 (180)
Q Consensus 78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~l~l~ 156 (180)
+++++++|.+....+..+. ++|+.+++++|.+. .+|..+..+++|++|++++|.+++ ++. .+..+++|+.++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECc
Confidence 9999999998755555443 78999999999998 677766799999999999999983 454 48889999999999
Q ss_pred CCcccCCCC
Q 030257 157 YNQLSGPIP 165 (180)
Q Consensus 157 ~n~~~~~~~ 165 (180)
+|++....+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999987655
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.6e-19 Score=133.86 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccch------------
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------ 69 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------ 69 (180)
++|+.|++++|.+. .+++..+.++++|++|++++|.+.+..+ +..+++|++|++++|.+....+.
T Consensus 34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 47888999888887 4555555668888889888888764333 66777777777766655422110
Q ss_pred ----hhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcccccc-CCCCCCeEEcccCcCC
Q 030257 70 ----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136 (180)
Q Consensus 70 ----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 136 (180)
....+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.++
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 001233445555555544433344444455555555555555443333332 3444444444444443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=126.66 Aligned_cols=154 Identities=19% Similarity=0.153 Sum_probs=124.2
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC--C--CccccCCCCccEEEecccccccccch----hhh
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--I--PSTLSNCKRLRNISLSLDDFSGTIPK----EIG 72 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~ 72 (180)
+++|++|++++|.+. .++...+.++++|++|++++|.+.+. . +..+..+++|++|++++|.+.. .+. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 478999999999996 56666666799999999999987531 2 2334678999999999999863 222 356
Q ss_pred ccCCccEEEeeCCcCCCCcchhhcCC---CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCC
Q 030257 73 NVTKLIRLYLRGNQLQGEIPEELGNL---AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSS 149 (180)
Q Consensus 73 ~l~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++|++|++++|.+....|..+..+ ++|+.|++++|.++ .+|..+. ++|++|++++|.+++ ++. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~--~~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR--APQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS--CCC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC--Cch-hhhCCC
Confidence 78999999999999987667666665 69999999999998 5566553 799999999999984 333 567899
Q ss_pred ccEEEccCCcccC
Q 030257 150 LQTLYLSYNQLSG 162 (180)
Q Consensus 150 L~~l~l~~n~~~~ 162 (180)
|+.|++++|++++
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999875
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3e-19 Score=128.04 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhh-hccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
+++|++|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+... + ....+++|+.+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence 5667778888887776666677778888888888888876655555 3678888888888887633 2 22347788888
Q ss_pred EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc-CCCChhhhh
Q 030257 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS-GPIPSFILC 170 (180)
Q Consensus 105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~ 170 (180)
++++|.+.+ .+..+..+++|++|++++|.++ .++..+..+++|+.+++++|++. +.++.++..
T Consensus 197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 888888874 4444777888888888888887 35666777888888888888887 444444443
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.8e-19 Score=127.46 Aligned_cols=159 Identities=22% Similarity=0.237 Sum_probs=86.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc----------------
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG---------------- 65 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------- 65 (180)
++|++|++++|.+. .++...+.++++|++|++++|.+.+..+ +..+++|++|++++|.+..
T Consensus 34 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence 46788888888776 4555555568888888888887763322 5666667777666665542
Q ss_pred ------------------------ccchhhhccCCccEEEeeCCcCCCCcchhh-cCCCcccEEEecCCcCCCCcccccc
Q 030257 66 ------------------------TIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF 120 (180)
Q Consensus 66 ------------------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~l~ 120 (180)
..+..+..+++|++|++++|.+....+..+ ..+++|+.+++++|.+++. + ...
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~ 188 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQV 188 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCC
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccc
Confidence 122233344444444444444443323322 2344455555555544322 1 111
Q ss_pred CCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 121 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
.+++|++|++++|.+++ ++..+..+++|+.|++++|.+. .+|..+
T Consensus 189 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc-chhhHh
Confidence 24555666666665552 3333555666666666666666 344443
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4.3e-18 Score=120.64 Aligned_cols=147 Identities=29% Similarity=0.370 Sum_probs=125.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|+.|++.+|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 57899999999886 4543 4559999999999999985433 88999999999999998742 4488999999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++. +. +..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCC
Confidence 999998743 5678899999999999999864 6778899999999999999853 33 888999999999999998
Q ss_pred C
Q 030257 162 G 162 (180)
Q Consensus 162 ~ 162 (180)
+
T Consensus 192 ~ 192 (291)
T 1h6t_A 192 D 192 (291)
T ss_dssp B
T ss_pred C
Confidence 5
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.6e-18 Score=130.69 Aligned_cols=149 Identities=27% Similarity=0.436 Sum_probs=115.0
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
|++|+.|++++|.+. .++. +..+++|+.|++++|.+.. . ..+..+++|+.|++++|.+... ..+..+++|+.|
T Consensus 64 l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 136 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 136 (605)
T ss_dssp CTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence 467888888888876 3444 4558888888888888763 3 3577888888888888888743 457788888888
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++ + ..+..+++|+.|++++|++
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcC
Confidence 8888887743 567788888888888888876545 7788888999998888874 3 3477788899999998888
Q ss_pred cCC
Q 030257 161 SGP 163 (180)
Q Consensus 161 ~~~ 163 (180)
...
T Consensus 210 ~~~ 212 (605)
T 1m9s_A 210 LNK 212 (605)
T ss_dssp ECC
T ss_pred cCC
Confidence 754
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.2e-18 Score=120.50 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=122.7
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++.+|.+. .++ . +..+++|++|++++|.+.+.. . +..+++|++|++++|.+... +. +.. ++|++|
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEE
T ss_pred cCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEE
Confidence 368999999999887 565 3 455999999999999998544 3 88999999999999998743 32 333 899999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred EccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcc
Confidence 9999998743 4588899999999999999764 3678899999999999999853 5678899999999999998
Q ss_pred cCC
Q 030257 161 SGP 163 (180)
Q Consensus 161 ~~~ 163 (180)
...
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 855
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=133.16 Aligned_cols=159 Identities=24% Similarity=0.367 Sum_probs=130.8
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC--CCccccCCCCccEEEeccccccc-ccchhhhccCCc
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--IPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKL 77 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 77 (180)
+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+. .+..+..+++|++|++++|.+.. .....+..+++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 4689999999999986555555 5599999999999998852 34668899999999999999986 333457889999
Q ss_pred cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCccc-ccCCCCccEEEcc
Q 030257 78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL-LGNQSSLQTLYLS 156 (180)
Q Consensus 78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~l~l~ 156 (180)
+++++++|.++...+..+. ++|+.+++++|.++ .+|..+..+++|++|++++|.+++ ++.. +..+++|+.++++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEec
Confidence 9999999998755444332 68999999999998 566666699999999999999983 5554 8889999999999
Q ss_pred CCcccCCCC
Q 030257 157 YNQLSGPIP 165 (180)
Q Consensus 157 ~n~~~~~~~ 165 (180)
+|++....+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 999987665
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=7.4e-19 Score=132.70 Aligned_cols=131 Identities=19% Similarity=0.148 Sum_probs=88.4
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+... + ....+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence 45667777777777655566666777777777777777665555554 567777777777776633 2 22346777777
Q ss_pred EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
++++|.+++ .+..+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.
T Consensus 197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 777777765 33346667777777777777762 5555666777777777777766
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=3.3e-18 Score=111.85 Aligned_cols=137 Identities=23% Similarity=0.186 Sum_probs=112.5
Q ss_pred CCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
.++|++|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 578999999999887 56777788899999999999998755 678889999999999999886567777778999999
Q ss_pred EecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCc---ccccCCCCccEEEccCCcccCCCCh
Q 030257 105 WLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIP---SLLGNQSSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 105 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~ 166 (180)
++++|.+.+... ..+..+++|++|++++|.+++. .+ ..+..+++|+.|++++|.+. .+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999976432 6788899999999999998743 22 36788999999999999877 3443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=1.8e-19 Score=129.90 Aligned_cols=157 Identities=19% Similarity=0.173 Sum_probs=92.4
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc-cccc-ccchhhhccCCccE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSG-TIPKEIGNVTKLIR 79 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~~~~l~~L~~ 79 (180)
++|++|++++|.+.+.....++.++++|++|++++|.+.+..+..+..+++|++|++++| .+.. ..+..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 567777777776653313333445777777777777666555556666777777777776 3442 23444566677777
Q ss_pred EEeeCC-cCCCC-cchhhcCCC-cccEEEecCC--cCC-CCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccE
Q 030257 80 LYLRGN-QLQGE-IPEELGNLA-ELEMLWLQNN--FLT-RAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQT 152 (180)
Q Consensus 80 l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 152 (180)
|++++| .++.. .+..+..++ +|+.|++++| .++ +..+..+..+++|++|++++|. +++. .+..+..+++|+.
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCE
Confidence 777766 55432 234455566 6666666666 333 2233444556666666666665 4432 3334555666666
Q ss_pred EEccCCc
Q 030257 153 LYLSYNQ 159 (180)
Q Consensus 153 l~l~~n~ 159 (180)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 6666663
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.6e-17 Score=120.26 Aligned_cols=156 Identities=26% Similarity=0.380 Sum_probs=102.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++.+|.+. .++. +..+++|++|++++|.+... +. +..+++|+.+++++|.+....+ +..+++|++++
T Consensus 155 ~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 227 (347)
T 4fmz_A 155 TGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227 (347)
T ss_dssp TTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence 34555555555443 2222 33355666666666655422 22 5556666666666666553322 66777888888
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+++|.+....+ +..+++|+.+++++|.+.+. ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+.
T Consensus 228 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCC
T ss_pred ccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCC
Confidence 88887764322 67778888888888887653 456778888888888888874 2 34677888999999999888
Q ss_pred CCCChhhhhh
Q 030257 162 GPIPSFILCK 171 (180)
Q Consensus 162 ~~~~~~~~~~ 171 (180)
+..+..+..+
T Consensus 301 ~~~~~~l~~l 310 (347)
T 4fmz_A 301 NEDMEVIGGL 310 (347)
T ss_dssp GGGHHHHHTC
T ss_pred CcChhHhhcc
Confidence 7666666554
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=5.9e-20 Score=132.46 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=136.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC-CCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++++.+++.++.+.+. +..++. +++|++|++++|.+.+. .+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~-~~~~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP-LAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSC-CCSCCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCcccccc-chhhcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5678889988888744 334444 89999999999987744 66778889999999999998877777788889999999
Q ss_pred EeeCC-cCCCC-cchhhcCCCcccEEEecCC-cCCCC-ccccccCCC-CCCeEEcccC--cCCCCCCcccccCCCCccEE
Q 030257 81 YLRGN-QLQGE-IPEELGNLAELEMLWLQNN-FLTRA-IPSSIFNLS-SLSNLDLSVN--NLTGGIIPSLLGNQSSLQTL 153 (180)
Q Consensus 81 ~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~l 153 (180)
++++| .++.. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++++| .+++..++..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99998 56532 4555778899999999999 88653 456677888 9999999999 56544456677789999999
Q ss_pred EccCCc-ccCCCChhhhhhccccccc
Q 030257 154 YLSYNQ-LSGPIPSFILCKFSLLDNI 178 (180)
Q Consensus 154 ~l~~n~-~~~~~~~~~~~~~~~~~~l 178 (180)
++++|. +++..+..+..+ +.++.+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l-~~L~~L 252 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQL-NYLQHL 252 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGC-TTCCEE
T ss_pred eCCCCCcCCHHHHHHHhCC-CCCCEe
Confidence 999998 676667666555 344443
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=5.2e-18 Score=110.87 Aligned_cols=132 Identities=25% Similarity=0.190 Sum_probs=113.8
Q ss_pred CCceEEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
++++.|++++|.+. +.+|..+ ..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67999999999987 4666654 5599999999999998854 778899999999999999987677888889999999
Q ss_pred EeeCCcCCCCc-chhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcccCcCC
Q 030257 81 YLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 81 ~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 136 (180)
++++|.+.... +..+..+++|+.+++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999988542 2678899999999999999986554 47889999999999999876
No 94
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=3.2e-17 Score=123.21 Aligned_cols=128 Identities=31% Similarity=0.382 Sum_probs=57.0
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
+++|++|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|++|++++|.+....+ +..+++|+.++
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 4444444444444432211 3444444555554444442211 4444455555555544442211 34444555555
Q ss_pred ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 164 (180)
+++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccc
Confidence 55555443322 33444555555555544421 23444555555555555554433
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.3e-17 Score=110.56 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=108.9
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+. .+ . .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 65 l~~L~~L~l~~n~~~-~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT-NY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CTTCSEEEEESCCCS-CC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCCCEEEccCCCCC-cc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 578999999999764 33 3 34559999999999999987678889999999999999999987778889999999999
Q ss_pred EeeCCc-CCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257 81 YLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (180)
Q Consensus 81 ~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 137 (180)
++++|. +.. .+ .+..+++|+.+++++|.+.+. + .+..+++|++|++++|.+.+
T Consensus 142 ~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 142 DLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred EccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 999998 663 44 688899999999999999863 3 67889999999999998863
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.2e-17 Score=127.38 Aligned_cols=149 Identities=29% Similarity=0.371 Sum_probs=126.0
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|+.|++.+|.+. .++ . +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. ...+..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-G-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-T-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCC-CCh-H-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCEE
Confidence 367889999999886 454 3 4569999999999999985443 8899999999999999874 2468899999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+
T Consensus 115 ~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCC
Confidence 999999874 35578899999999999999864 6788899999999999999853 33 88899999999999999
Q ss_pred cCC
Q 030257 161 SGP 163 (180)
Q Consensus 161 ~~~ 163 (180)
.+.
T Consensus 188 ~~l 190 (605)
T 1m9s_A 188 SDL 190 (605)
T ss_dssp CBC
T ss_pred CCC
Confidence 863
No 97
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=2.6e-17 Score=109.91 Aligned_cols=129 Identities=21% Similarity=0.308 Sum_probs=95.4
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCc-cccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 83 (180)
+.++++++.+. .+|..+. .++++|++++|.+....+. .|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 46777777775 6676553 3778888888877744443 36778888888888888876667777788888888888
Q ss_pred CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137 (180)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 137 (180)
+|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888776556667777888888888888876667777777888888888887763
No 98
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=9.6e-18 Score=111.97 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=110.2
Q ss_pred cEEEcccccCCCCCCccccCCCCccEEEecccccccccch-hhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257 30 ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (180)
Q Consensus 30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (180)
+.++++++.+. .+|..+. .+++.|++++|.+....+. .+..+++|++|++++|.++...|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 5665443 3899999999998865554 488899999999999999877788889999999999999
Q ss_pred CcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999877777788899999999999998853 56778888999999999999887655
No 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=6.2e-17 Score=121.61 Aligned_cols=148 Identities=26% Similarity=0.375 Sum_probs=124.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+.. . +..+++|+.|++++|.+....+ +..+++|++|
T Consensus 242 l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 242 LTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp CTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred CCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 4678889999888874 333 556999999999999988443 3 7889999999999999885443 7899999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
++++|.+....+ +..+++|+.+++++|.+.+. ..+..+++|+.|++++|.+++. .+ +..+++|+.|++++|.+
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL-TP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC-GG--GTTCTTCCEEECCCEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc-ch--hhcCCCCCEEeccCCcc
Confidence 999999885544 67899999999999999864 4678899999999999999854 33 78899999999999998
Q ss_pred cC
Q 030257 161 SG 162 (180)
Q Consensus 161 ~~ 162 (180)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 86
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=5.9e-18 Score=108.51 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=101.9
Q ss_pred CCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257 26 LSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104 (180)
Q Consensus 26 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l 104 (180)
.+++++|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|+++++++|.+....|..+..+++|+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888899888887 56777778888899999988888754 667788889999999988876567777778889999
Q ss_pred EecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCc---ccccCCCCccEEEccC
Q 030257 105 WLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIP---SLLGNQSSLQTLYLSY 157 (180)
Q Consensus 105 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~ 157 (180)
++++|.+.+. .+..+..+++|++|++++|.+++. .+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence 9999988753 236778888999999999988743 22 3577788899888753
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.4e-17 Score=108.82 Aligned_cols=127 Identities=31% Similarity=0.410 Sum_probs=88.1
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.++++++.+. .+|..+. +++++|++++|.+. ..|..|..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 35666666665 5665542 46777777777776 5556677777777777777777766666677777777777777
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
|.++...+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777555566777777777777777776544456667777777777777654
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1.2e-17 Score=107.02 Aligned_cols=126 Identities=24% Similarity=0.220 Sum_probs=63.5
Q ss_pred CceEEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 3 SLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 3 ~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
+++.|++++|.+. +.+|..+ ..+++|++|++++|.+... ..+..+++|++|++++|.+....|..+..+++|++++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4555555555554 3344322 2355555555555555433 4445555555555555555543444444555555555
Q ss_pred eeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcc
Q 030257 82 LRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS 131 (180)
Q Consensus 82 l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 131 (180)
+++|.+... .+..+..+++|+.+++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555432 12444555555555555555544332 244455555555543
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=3.3e-18 Score=124.72 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=56.8
Q ss_pred CceEEEeeCCeecccCch----hhhhcCC-CccEEEcccccCCCCCCccccCC-----CCccEEEecccccccccchhhh
Q 030257 3 SLLSIRFTNNTLFGELPP----NFCNHLS-NLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIG 72 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~ 72 (180)
+|++|++++|.+. ..+. ..+.+++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+.
T Consensus 23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 3666666666665 3332 3334455 66666666666654444444432 6666666666665543333222
Q ss_pred ----cc-CCccEEEeeCCcCCCCcchh----hcC-CCcccEEEecCCcCC
Q 030257 73 ----NV-TKLIRLYLRGNQLQGEIPEE----LGN-LAELEMLWLQNNFLT 112 (180)
Q Consensus 73 ----~l-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~l~l~~~~~~ 112 (180)
.+ ++|++|++++|.+....+.. +.. .++|+.|++++|.+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 22 55666666666554333322 222 235555555555554
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=7.2e-19 Score=129.18 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=17.5
Q ss_pred CCCccEEEcccccCCC----CCCccccCCCCccEEEeccccc
Q 030257 26 LSNLESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDF 63 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 63 (180)
+++|++|++++|.+.. .++..+..+++|++|++++|.+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 4555555555554443 1233334444444444444444
No 105
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=2.2e-16 Score=104.02 Aligned_cols=128 Identities=25% Similarity=0.269 Sum_probs=71.1
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.+++.++.+. .+|..+ .+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34555555554 445433 24566666666666544444455566666666666666544444455566666666666
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
|.++...+..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655433344555566666666666655443344455556666666665554
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.9e-16 Score=103.41 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=111.2
Q ss_pred ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (180)
Q Consensus 29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (180)
.+.+++.++.+. ..|..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888877 444433 36899999999999877667788999999999999999865566678999999999999
Q ss_pred CcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++....+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeeccCc
Confidence 999977777788999999999999999842 44456789999999999999987665
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.1e-16 Score=104.74 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=111.4
Q ss_pred cEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCC
Q 030257 30 ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109 (180)
Q Consensus 30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 109 (180)
+.++++++.+. .+|..+ .++++.|++++|.+. ..|..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 556544 368999999999998 56688999999999999999998777778999999999999999
Q ss_pred cCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257 110 FLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 110 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 164 (180)
.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|+.+++++|++....
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeecCC
Confidence 99987778899999999999999999842 4446788999999999999986543
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=3.9e-18 Score=125.27 Aligned_cols=112 Identities=26% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCccEEEecccccc-cccc---hhhhccCCccEEEeeCCcCCCC-----cchhhcCCCcccEEEecCCcCC----CCccc
Q 030257 51 KRLRNISLSLDDFS-GTIP---KEIGNVTKLIRLYLRGNQLQGE-----IPEELGNLAELEMLWLQNNFLT----RAIPS 117 (180)
Q Consensus 51 ~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~----~~~~~ 117 (180)
++|++|++++|.+. ...+ ..+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555554443 1111 2333444555555555444311 1113344445555555555442 22333
Q ss_pred cccCCCCCCeEEcccCcCCCCC---Ccccc--cCCCCccEEEccCCcccC
Q 030257 118 SIFNLSSLSNLDLSVNNLTGGI---IPSLL--GNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 118 ~l~~~~~L~~L~l~~~~~~~~~---~~~~~--~~~~~L~~l~l~~n~~~~ 162 (180)
.+..+++|++|++++|.+++.. ++..+ ..+++|+.|++++|.+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 4444455555555555444210 11222 124455555555555543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.5e-17 Score=115.10 Aligned_cols=145 Identities=25% Similarity=0.360 Sum_probs=117.3
Q ss_pred ceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257 4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (180)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 83 (180)
+..+++.++.+. .++ . +..+++|++|++++|.+. ..+ .+..+++|+.|++++|.+....+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344556666665 344 2 345899999999999987 444 68899999999999999985544 8899999999999
Q ss_pred CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
+|.+.. .+. +.. ++|+.|++++|.+.+. ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch
Confidence 999874 333 233 8999999999999753 458889999999999999985 33 678899999999999999865
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=8.7e-18 Score=122.48 Aligned_cols=166 Identities=24% Similarity=0.291 Sum_probs=102.0
Q ss_pred CceEEEeeCCeecccCchhhhh---c-CCCccEEEcccccCCCCCCccc----cCC-CCccEEEecccccccccchhhhc
Q 030257 3 SLLSIRFTNNTLFGELPPNFCN---H-LSNLESLFLKNNMFHGKIPSTL----SNC-KRLRNISLSLDDFSGTIPKEIGN 73 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~---~-l~~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~~~~ 73 (180)
+|++|++++|.+.+..+..+.. . .++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+....+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 6888888888877444444333 1 2788888888887775444433 334 67888888888776554444332
Q ss_pred -----cCCccEEEeeCCcCCCCcc----hhhcCCC-cccEEEecCCcCCCCccc----cccCC-CCCCeEEcccCcCCCC
Q 030257 74 -----VTKLIRLYLRGNQLQGEIP----EELGNLA-ELEMLWLQNNFLTRAIPS----SIFNL-SSLSNLDLSVNNLTGG 138 (180)
Q Consensus 74 -----l~~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~ 138 (180)
..+|++|++++|.+..... ..+...+ +|+.|++++|.+++..+. .+... ++|++|++++|.+.+.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 2578888888877664332 2334443 778888888777654443 23344 4777777777777642
Q ss_pred C---CcccccC-CCCccEEEccCCcccCCCChhh
Q 030257 139 I---IPSLLGN-QSSLQTLYLSYNQLSGPIPSFI 168 (180)
Q Consensus 139 ~---~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~ 168 (180)
. ++..+.. .++|+.|++++|.+.+..++.+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 1 2223333 3577777777777776554443
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=9.7e-17 Score=116.47 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=108.5
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC-CccccCCCCccE-EEecccccccccchhhhccCCccE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRN-ISLSLDDFSGTIPKEIGNVTKLIR 79 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~ 79 (180)
+++++|++++|.+. .+|.+.+.++++|++|++++|.+.+.. +.+|.+++++.. +.+..+.+....++.+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 47899999999987 788888888999999999999876443 346777877765 445567777666777888888888
Q ss_pred EEeeCCcCCCCcchhhcCCC--------------------------cccEEEecCCcCCCCccccccCCCCCCeEEccc-
Q 030257 80 LYLRGNQLQGEIPEELGNLA--------------------------ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV- 132 (180)
Q Consensus 80 l~l~~~~~~~~~~~~~~~~~--------------------------~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~- 132 (180)
+++.+|.+....+..+.... .++.+++++|.++. ++.......+++++++++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 88888876533222222222 34556666666653 333333345667777764
Q ss_pred CcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 166 (180)
|.++ ...+..+..+++|+.|++++|.++...+.
T Consensus 188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp TTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred Cccc-CCCHHHhccCcccchhhcCCCCcCccChh
Confidence 3444 22334567788899999999988854333
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=2.1e-16 Score=114.70 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=91.5
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccccc-chhhhccCCccE-EEe
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTI-PKEIGNVTKLIR-LYL 82 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-l~l 82 (180)
+.++.+++.++ .+|.++ .+++++|++++|++....+.+|.++++|++|++++|.+.... +..|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46777788877 788776 357999999999998555668999999999999999985444 456788988776 456
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEc
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 130 (180)
..|.+....+..+..+++|+.+++++|.+....+..+....++..+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 668888666778999999999999999886543333333333334443
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=1.3e-15 Score=114.11 Aligned_cols=148 Identities=20% Similarity=0.157 Sum_probs=87.4
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccc------------
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP------------ 68 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------ 68 (180)
+++|++|++++|.+.+ ++ +.++++|++|++++|.+.+ .+ +..+++|++|++++|.+.....
T Consensus 84 l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH 156 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence 3567777777776653 33 3346677777777766653 22 5566666666666666553210
Q ss_pred -------hhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCc
Q 030257 69 -------KEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP 141 (180)
Q Consensus 69 -------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 141 (180)
-.+..+++|+++++++|.++. .+ +..+++|+.+++++|.+++. .+..+++|+.|++++|.+++ ++
T Consensus 157 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip 228 (457)
T 3bz5_A 157 LNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID 228 (457)
T ss_dssp TCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC
T ss_pred CCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC
Confidence 023344555555555555543 22 44556666666666666543 25566777777777777764 33
Q ss_pred ccccCCCCccEEEccCCcccCCCC
Q 030257 142 SLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 142 ~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
+..+++|+.|++++|.+++..+
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCC
T ss_pred --ccccCCCCEEEeeCCcCCCcCH
Confidence 5667777888888777775443
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.5e-16 Score=120.60 Aligned_cols=147 Identities=24% Similarity=0.297 Sum_probs=71.2
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|+.|++++|.+.. .|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 34666666666655 455 224556666666665553 333 322 55555555555443 222 344444444
Q ss_pred eeCCcCCC-------------------CcchhhcCCCcccEEEecCCcCCCCccccccCCCCC-------CeEEcccCcC
Q 030257 82 LRGNQLQG-------------------EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL-------SNLDLSVNNL 135 (180)
Q Consensus 82 l~~~~~~~-------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~ 135 (180)
+++|.++. ..|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.+
T Consensus 147 Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 147 ADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred CCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 44444442 1222 22 44555555555554 2232 222 33 5555555555
Q ss_pred CCCCCcccccCCCCccEEEccCCcccCCCChhhhh
Q 030257 136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC 170 (180)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 170 (180)
+ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 220 ~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 220 T--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred e--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 5 24444444566666666666665555555443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=1.6e-15 Score=116.11 Aligned_cols=134 Identities=29% Similarity=0.355 Sum_probs=97.3
Q ss_pred CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257 3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 82 (180)
+++.|++++|.+. .+|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+.. .|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7899999999987 488766 378999999999998 566 457899999999999985 555 554 9999999
Q ss_pred eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
++|.++. +|. .+++|+.|++++|.+++ ++. .+++|++|++++|.+++ ++. +. ++|+.|++++|.++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC
Confidence 9999885 444 56778888888887765 333 34566666666666553 333 22 45555555555544
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-15 Score=113.07 Aligned_cols=142 Identities=20% Similarity=0.179 Sum_probs=101.0
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|++|++++|.+.+ ++ +.++++|++|++++|.+.+. + +..+++|++|++++|.+... + +..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE
Confidence 5789999999999874 54 45699999999999998853 3 88999999999999998853 3 7888999999
Q ss_pred EeeCCcCCCCcchhhcCCCcccEEEecCC----------------------cCCCCccccccCCCCCCeEEcccCcCCCC
Q 030257 81 YLRGNQLQGEIPEELGNLAELEMLWLQNN----------------------FLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138 (180)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 138 (180)
++++|.++.. + +..+++|+.+++++| .+++ .+ +..+++|+.|++++|.+++.
T Consensus 133 ~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 133 NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 9999987743 2 445555555555555 3332 11 34445555555555555431
Q ss_pred CCcccccCCCCccEEEccCCcccC
Q 030257 139 IIPSLLGNQSSLQTLYLSYNQLSG 162 (180)
Q Consensus 139 ~~~~~~~~~~~L~~l~l~~n~~~~ 162 (180)
.+..+++|+.|++++|.+++
T Consensus 207 ----~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 207 ----DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ----CCTTCTTCSEEECCSSCCSC
T ss_pred ----ccccCCCCCEEECcCCcccc
Confidence 24556677777777777765
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=7.3e-17 Score=127.01 Aligned_cols=123 Identities=28% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccC
Q 030257 42 KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121 (180)
Q Consensus 42 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 121 (180)
..+..+..+..|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666777777777777766 44444556777777777777766 55666666777777777777776 45666667
Q ss_pred CCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 122 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 292 l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 777777777777665 3555566677777777777777766665553
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2.9e-16 Score=103.34 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=94.2
Q ss_pred cCCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257 25 HLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM 103 (180)
Q Consensus 25 ~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 103 (180)
.+.+|++|++++|.+. ..+. +..+. +|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3677888888888777 3343 44444 888888888887744 56777888888888888877443344577788888
Q ss_pred EEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcc----cccCCCCccEEEccCCccc
Q 030257 104 LWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPS----LLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 104 l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~ 161 (180)
+++++|.+.+ .+. .+..+++|+.|++++|.+++ .+. .+..+++|+.+++++|...
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888854 443 67778888888888888763 344 3677888888888887654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.5e-18 Score=130.97 Aligned_cols=109 Identities=26% Similarity=0.277 Sum_probs=95.4
Q ss_pred CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257 52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131 (180)
Q Consensus 52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 131 (180)
.|+.|++++|.+.. .|. +..+++|++|++++|.+. ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999885 455 899999999999999998 678889999999999999999986 55 78899999999999
Q ss_pred cCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
+|.+++...|..+..+++|+.|++++|++++..+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999854227889999999999999999986554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.5e-17 Score=129.62 Aligned_cols=145 Identities=26% Similarity=0.349 Sum_probs=106.7
Q ss_pred CchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcC
Q 030257 18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN 97 (180)
Q Consensus 18 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 97 (180)
++...+..+..|+.|++++|.+. .++..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666899999999999988 66766778999999999999988 67788899999999999999988 56888888
Q ss_pred CCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCC-CccEEEccCCcccCCCChh
Q 030257 98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS-SLQTLYLSYNQLSGPIPSF 167 (180)
Q Consensus 98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~ 167 (180)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. .+..+.... ....+++++|.+++.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ-FLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC-ChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 999999999999987 5677788999999999999998753 333332211 1122444445444444443
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=5.6e-18 Score=126.90 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=76.9
Q ss_pred CCceEEEeeCCeeccc----CchhhhhcCCCccEEEcccccCCCCC-----CccccCCCCccEEEecccccccc----cc
Q 030257 2 SSLLSIRFTNNTLFGE----LPPNFCNHLSNLESLFLKNNMFHGKI-----PSTLSNCKRLRNISLSLDDFSGT----IP 68 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~ 68 (180)
++|++|++++|.+.+. ++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+... .+
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 3566666666665532 122 2223566666666666544211 11112345555555555555422 23
Q ss_pred hhhhccCCccEEEeeCCcC-----------------------------CCC----cchhhcCCCcccEEEecCCcCCCCc
Q 030257 69 KEIGNVTKLIRLYLRGNQL-----------------------------QGE----IPEELGNLAELEMLWLQNNFLTRAI 115 (180)
Q Consensus 69 ~~~~~l~~L~~l~l~~~~~-----------------------------~~~----~~~~~~~~~~L~~l~l~~~~~~~~~ 115 (180)
..+..+++|++|++++|.+ +.. .+..+..+++|+.+++++|.+.+..
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 3344445555555555544 322 1223334455555555555554322
Q ss_pred ccccc-----CCCCCCeEEcccCcCCCC---CCcccccCCCCccEEEccCCcccCC
Q 030257 116 PSSIF-----NLSSLSNLDLSVNNLTGG---IIPSLLGNQSSLQTLYLSYNQLSGP 163 (180)
Q Consensus 116 ~~~l~-----~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~ 163 (180)
+..+. ..++|++|++++|.+++. .++..+..+++|+.|++++|++++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 22221 144566666666665531 1334455566666666666666543
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.8e-17 Score=123.12 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCceEEEeeCCeecccCchhhhhcCC----CccEEEcccccCCC----CCCccccCCCCccEEEecccccc
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLS----NLESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDFS 64 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~ 64 (180)
++|++|++++|.+.+..+..++..++ +|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 34455555554443322333333333 35555555554442 12344445555555555555443
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=4.8e-16 Score=102.28 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=105.0
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 80 (180)
+++|+.|++++|.+. .++ .+....++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 367899999999887 454 4555355999999999998843 678889999999999999986555556889999999
Q ss_pred EeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccc----cccCCCCCCeEEcccCcCC
Q 030257 81 YLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPS----SIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 81 ~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 136 (180)
++++|.+.. .+. .+..+++|+.+++++|++.. .+. .+..+++|+.|++++|...
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999863 444 67888999999999999974 344 4778899999999998765
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.3e-15 Score=106.91 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=127.1
Q ss_pred CCCceEEEeeCCeecc-------------------cCchhhhhc--------CCCccEEEcccccCCCCCCccccCCCCc
Q 030257 1 MSSLLSIRFTNNTLFG-------------------ELPPNFCNH--------LSNLESLFLKNNMFHGKIPSTLSNCKRL 53 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L 53 (180)
+++|+.|++++|.+.. .+|...|.+ +.+|+.+.+.+ .+......+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 4678999999888760 356677777 89999999988 7776677788899999
Q ss_pred cEEEecccccccccchhhh-------------------------------------------------------------
Q 030257 54 RNISLSLDDFSGTIPKEIG------------------------------------------------------------- 72 (180)
Q Consensus 54 ~~L~l~~~~~~~~~~~~~~------------------------------------------------------------- 72 (180)
+.+++.++.+....+..|.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999988764211111100
Q ss_pred -----------------ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCC-eEEcccCc
Q 030257 73 -----------------NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS-NLDLSVNN 134 (180)
Q Consensus 73 -----------------~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~ 134 (180)
.+++|+.+++.+|.+......+|.+|++|+.+++..| +......+|.++.+|+ .+++.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 2678899999988887666668899999999999887 6555557888999999 999988 5
Q ss_pred CCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhccccccc
Q 030257 135 LTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l 178 (180)
++. ..+.++..|++|+.+++.+|.+....+..|..+ ..++.+
T Consensus 285 l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~-~~L~~l 326 (329)
T 3sb4_A 285 VTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNG-VPSKLI 326 (329)
T ss_dssp CCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT-CCCCEE
T ss_pred ceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCC-cchhhh
Confidence 542 345678899999999999999885444455444 444444
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.5e-17 Score=111.50 Aligned_cols=153 Identities=23% Similarity=0.282 Sum_probs=112.9
Q ss_pred CceEEEeeCCeecccCch------hhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCC
Q 030257 3 SLLSIRFTNNTLFGELPP------NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76 (180)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 76 (180)
.++.+++.++.+.+.+|. .+ ..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. ..|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 344444555555444433 44 459999999999998884 55 7888999999999999887 55666777889
Q ss_pred ccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCc----------cccc
Q 030257 77 LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIP----------SLLG 145 (180)
Q Consensus 77 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----------~~~~ 145 (180)
|++|++++|.+.. .+ .+..+++|+.+++++|.+.+... ..+..+++|++|++++|.+.+. .+ ..+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHH
Confidence 9999999998874 34 57778899999999999875332 4677889999999999987532 22 1367
Q ss_pred CCCCccEEEccCCcccCCC
Q 030257 146 NQSSLQTLYLSYNQLSGPI 164 (180)
Q Consensus 146 ~~~~L~~l~l~~n~~~~~~ 164 (180)
.+++|+.|| +++++...
T Consensus 172 ~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp HCSSCSEEC--CGGGTTTT
T ss_pred hCCCcEEEC--CcccCHHH
Confidence 788899887 67766433
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.60 E-value=1.3e-14 Score=112.34 Aligned_cols=65 Identities=34% Similarity=0.290 Sum_probs=35.8
Q ss_pred CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
++|+.|++++|.++. ++. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+.
T Consensus 241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 445555555555542 222 3455666666666665 2455566666666666666666655555443
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=1.1e-13 Score=107.03 Aligned_cols=64 Identities=33% Similarity=0.372 Sum_probs=39.9
Q ss_pred CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhc
Q 030257 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF 172 (180)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 172 (180)
++|+.|++++|.+++ ++ ..+++|+.|++++|.++. ++. .+++|+.|++++|.++ .+|..+..+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 345555555555543 22 234567777777777662 343 4577888888888888 6677665543
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1e-13 Score=103.88 Aligned_cols=77 Identities=31% Similarity=0.402 Sum_probs=36.1
Q ss_pred CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEec
Q 030257 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ 107 (180)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (180)
+|++|++++|.+.+ .| .+..+++|++|++++|.+.. .|.. ..+|+++++++|.+.. .| .+..+++|+.++++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 45555555555542 33 35555555555555555442 2211 1345555555554442 22 34444555555555
Q ss_pred CCcCC
Q 030257 108 NNFLT 112 (180)
Q Consensus 108 ~~~~~ 112 (180)
+|.+.
T Consensus 204 ~N~l~ 208 (454)
T 1jl5_A 204 NNSLK 208 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 55444
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=9.4e-14 Score=104.05 Aligned_cols=140 Identities=28% Similarity=0.388 Sum_probs=91.7
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
++|++|++++|.+. .+| + +.++++|++|++++|.+.+ .|.. ..+|++|++++|.+.. .| .+..+++|++++
T Consensus 131 ~~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 47888888888887 466 3 4558899999999988773 4443 2478888888888774 34 477778888888
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+.+|.+.. .|.. .++|+.+++++|.+. .++ .+..+++|++|++++|.+++ ++.. .++|+.|++++|.+.
T Consensus 202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCS
T ss_pred CCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCccc
Confidence 88777663 2322 246777777777666 344 35666777777777776653 2221 244555555555544
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=3e-14 Score=109.31 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=104.3
Q ss_pred CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEec
Q 030257 28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ 107 (180)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~ 107 (180)
.|+.|++++|.+.+ +|. +..+++|+.|++++|.+. ..|..+..+++|++|++++|.++. .| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999984 665 899999999999999998 678899999999999999999985 56 78899999999999
Q ss_pred CCcCCCCc-cccccCCCCCCeEEcccCcCCCCC--CcccccCCCCccEEEc
Q 030257 108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGI--IPSLLGNQSSLQTLYL 155 (180)
Q Consensus 108 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l 155 (180)
+|.+++.. |..+..+++|+.|++++|.+++.. ....+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99998776 889999999999999999987431 1123445788888864
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=2.5e-14 Score=93.59 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=54.2
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.++++++.+. .+|..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34555555554 344433 24555555555555544455555555555555555555544444445555555555555
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLT 112 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 112 (180)
|.+....+..+..+++|+.+++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555333334555555555555555553
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.7e-15 Score=116.64 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=106.7
Q ss_pred CCCceEEEeeC-----------CeecccCchhhhhcCCCccEEEcccccCCCCCCccccC-CCCccEEEec----ccccc
Q 030257 1 MSSLLSIRFTN-----------NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN-CKRLRNISLS----LDDFS 64 (180)
Q Consensus 1 l~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~~~ 64 (180)
+++|++|++.+ +.+++.....+..++++|++|++..+.+.+.....+.. +++|+.|++. .+.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 35677777763 23332223333445777777777666665444444443 6777777775 33443
Q ss_pred cc-----cchhhhccCCccEEEeeCCc--CCCCcchhh-cCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcC
Q 030257 65 GT-----IPKEIGNVTKLIRLYLRGNQ--LQGEIPEEL-GNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 65 ~~-----~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~-~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 135 (180)
.. .+..+..+++|++|+++.+. +....+..+ ..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 21 22335567888888886433 333333333 3478899999998888653 334556788999999999987
Q ss_pred CCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
++...+..+..+++|+.|++++|.+++.-.+.++
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 6544555566788999999999998766444443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=8.3e-14 Score=91.07 Aligned_cols=105 Identities=22% Similarity=0.197 Sum_probs=79.1
Q ss_pred ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257 29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (180)
Q Consensus 29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (180)
.++++++++.+. .+|..+ .+++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467788888776 455544 36788888888888776677788888888888888887755555667788888888888
Q ss_pred CcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8887655566777888888888888765
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5.9e-14 Score=92.12 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=40.4
Q ss_pred CCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEc
Q 030257 51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130 (180)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 130 (180)
++++.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44444455544444444444444555555555555444322223344455555555555554333333444555555555
Q ss_pred ccCcCC
Q 030257 131 SVNNLT 136 (180)
Q Consensus 131 ~~~~~~ 136 (180)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555443
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=2.4e-16 Score=115.18 Aligned_cols=169 Identities=18% Similarity=0.160 Sum_probs=121.4
Q ss_pred CCceEEEeeCCeecccCchhhhh----cCCCccEEEcccccCCCCCCccc-cCCCCccEEEecccccccccchhhh----
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCN----HLSNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLSLDDFSGTIPKEIG---- 72 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~---- 72 (180)
+.|+.|++++|.+.......+.. +..+|++|++++|.+.+.....+ ..+++|+.|++++|.+.......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57899999999986432222222 23689999999998864333333 2467899999999998754444442
Q ss_pred -ccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCC---C
Q 030257 73 -NVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGI---I 140 (180)
Q Consensus 73 -~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~---~ 140 (180)
..++|++|++++|.+... ....+..+++|+.|++++|.+.+.. ...+...++|++|++++|.+++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 467899999999987643 3344567889999999999986532 445667789999999999997531 2
Q ss_pred cccccCCCCccEEEccCCcccCCCChhhhh
Q 030257 141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILC 170 (180)
Q Consensus 141 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 170 (180)
...+...++|+.|++++|.+.+.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 334556789999999999988655555443
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=1.9e-13 Score=89.64 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=78.9
Q ss_pred eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 46777777775 6776553 6778888888888766677778888888888888888765555667788888888888
Q ss_pred CcCCCCcchhhcCCCcccEEEecCCcCCC
Q 030257 85 NQLQGEIPEELGNLAELEMLWLQNNFLTR 113 (180)
Q Consensus 85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (180)
|.+....+..+..+++|+.+++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88775444457778888888888887764
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=1.7e-14 Score=111.07 Aligned_cols=84 Identities=11% Similarity=0.229 Sum_probs=35.6
Q ss_pred ceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCCCC----CCccccCCCCccEEEecccccc----cccchhhhcc
Q 030257 4 LLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFS----GTIPKEIGNV 74 (180)
Q Consensus 4 L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l 74 (180)
|++|++.+|.. .......+..++++|++|++++|.+.+. .+..+..+++|+.|+++++.+. ...+..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 55555555541 1111122223455555555555554322 1112233455555555554443 1122223344
Q ss_pred CCccEEEeeCCcC
Q 030257 75 TKLIRLYLRGNQL 87 (180)
Q Consensus 75 ~~L~~l~l~~~~~ 87 (180)
++|++|++.++.+
T Consensus 220 ~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 220 RSLVSVKVGDFEI 232 (592)
T ss_dssp TTCCEEECSSCBG
T ss_pred CCCcEEeccCccH
Confidence 5555555554443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.8e-16 Score=106.26 Aligned_cols=137 Identities=25% Similarity=0.283 Sum_probs=111.1
Q ss_pred cCCCccEEEcccccCCCCCCc------cccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCC
Q 030257 25 HLSNLESLFLKNNMFHGKIPS------TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98 (180)
Q Consensus 25 ~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 98 (180)
....++.+++.++.+.+..+. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. ..|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 366777777777776655554 78899999999999999885 45 7889999999999999988 466667777
Q ss_pred CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257 99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166 (180)
Q Consensus 99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 166 (180)
++|+.+++++|.+.+ .+ .+..+++|++|++++|.+++......+..+++|+.+++++|++.+.+|.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 899999999999986 34 5778899999999999998421113678899999999999999766543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.1e-13 Score=98.16 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=87.1
Q ss_pred CCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCccc-EEEecCCcCCCCccccccCCCCCCeE
Q 030257 50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNL 128 (180)
Q Consensus 50 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L 128 (180)
+++|+.+++++|.+.......|.++.+|+.+++..+ +......+|.+|++|+ .+++.. .+....+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999888777788999999999999998 6656677899999999 999988 6665556889999999999
Q ss_pred EcccCcCCCCCCcccccCCCCccEEE
Q 030257 129 DLSVNNLTGGIIPSLLGNQSSLQTLY 154 (180)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~l~ 154 (180)
++.++.++. ....++.++++|+.+.
T Consensus 303 ~l~~n~i~~-I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITT-LGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred EeCCCccCc-cchhhhcCCcchhhhc
Confidence 999998874 3456788999999886
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=7.2e-14 Score=107.65 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 121 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
.+++|++|++++|.+++..+...+..+++|+.|++++|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 34566666666666543323333445566666666655
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=1.9e-14 Score=110.91 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=48.9
Q ss_pred hccCCccEEEeeCCcCCCCcchhhcC-CCcccEEEecCCcCCCCccccc-cCCCCCCeEEcccCcCCCCCCcccccCCCC
Q 030257 72 GNVTKLIRLYLRGNQLQGEIPEELGN-LAELEMLWLQNNFLTRAIPSSI-FNLSSLSNLDLSVNNLTGGIIPSLLGNQSS 149 (180)
Q Consensus 72 ~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (180)
..+++|++|++++ .+....+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++......+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445555555544 233222222322 5667777777666654333322 456777777777777654323334445667
Q ss_pred ccEEEccCCccc
Q 030257 150 LQTLYLSYNQLS 161 (180)
Q Consensus 150 L~~l~l~~n~~~ 161 (180)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 777777777664
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=9.6e-14 Score=101.45 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=112.1
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccc-----cCCCCccEEEecccccccc----cchhhh
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL-----SNCKRLRNISLSLDDFSGT----IPKEIG 72 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~ 72 (180)
++|++|++++|.+.+.....+...+++|++|++++|.+.+.....+ ...++|++|++++|.+... .+..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5899999999998754455555667899999999998874433333 3468899999999998643 334456
Q ss_pred ccCCccEEEeeCCcCCCCc----chhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCCCcccc
Q 030257 73 NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144 (180)
Q Consensus 73 ~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 144 (180)
.+++|++|++++|.+.... ...+...++|+.|++++|.+++.. ...+...++|++|++++|.+++... ..+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHH
Confidence 7899999999999876432 455677789999999999997533 3345567899999999999975322 222
Q ss_pred c---CCC--CccEEE--ccCCcccC
Q 030257 145 G---NQS--SLQTLY--LSYNQLSG 162 (180)
Q Consensus 145 ~---~~~--~L~~l~--l~~n~~~~ 162 (180)
. ... .++.+. +..+.+..
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHCC------CEEECCCC----CHH
T ss_pred HHHhcCCCccchhhHhhhcCCccCH
Confidence 1 112 266776 66666543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=9.9e-12 Score=89.91 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=77.9
Q ss_pred EEEeeCC-eecccCchhhhhcCCCccEEEccc-ccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257 6 SIRFTNN-TLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83 (180)
Q Consensus 6 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 83 (180)
.++++++ .+. .+|. +..+.+|++|++++ |.+....+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 565 5777 44578888888886 88876666778888888888888888887777778888888888888
Q ss_pred CCcCCCCcchhhcCCCcccEEEecCCcCCC
Q 030257 84 GNQLQGEIPEELGNLAELEMLWLQNNFLTR 113 (180)
Q Consensus 84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 113 (180)
+|.+....+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888754444555554 8888888888753
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1.6e-11 Score=90.55 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=88.1
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc-------------------
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD------------------- 61 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------- 61 (180)
|++|+.+.+.++.+. .++...|. ..+|+.+.+..+ +......+|.++++|+.+++..+
T Consensus 179 c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 179 CYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp CTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred cccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEe
Confidence 345666666555444 34444444 344555555432 33333445555666666665442
Q ss_pred --ccccccchhhhccCCccEEEeeCCcCC-----CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCc
Q 030257 62 --DFSGTIPKEIGNVTKLIRLYLRGNQLQ-----GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134 (180)
Q Consensus 62 --~~~~~~~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 134 (180)
.+.......|.++.+|+.+.+.++.+. ......|..|++|+.+++.. .+......+|.++.+|+.+.+..+
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 122233445556666666666655432 12344566666666666653 344333456666777777777554
Q ss_pred CCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257 135 LTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 171 (180)
++. ....++..+ +|+.+++.+|.........+..+
T Consensus 334 l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 334 VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 331 234556777 88888888887665444444444
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8.7e-12 Score=90.22 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=79.3
Q ss_pred EEEcccc-cCCCCCCccccCCCCccEEEecc-cccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257 31 SLFLKNN-MFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108 (180)
Q Consensus 31 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 108 (180)
.++.+++ .+. .+|. +..+.+|+.|++++ |.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 5666 78888888888885 888766667788888888888888888766666788888888888888
Q ss_pred CcCCCCccccccCCCCCCeEEcccCcCC
Q 030257 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 136 (180)
|.+.+..+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888765555555554 888888888775
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=3.2e-11 Score=87.68 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=107.9
Q ss_pred CCCceEEEeeCCeecc--------cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh
Q 030257 1 MSSLLSIRFTNNTLFG--------ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG 72 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 72 (180)
+++|+.|.+.+..... .-...+...+|+|+.|.+.++.-. ..+. + .+++|+.|++..|.+.......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 3688999886543210 012345566899999999887322 2222 3 378999999998887644434444
Q ss_pred --ccCCccEEEeeCC--cCC-CC----cchhh--cCCCcccEEEecCCcCCCCccccc---cCCCCCCeEEcccCcCCCC
Q 030257 73 --NVTKLIRLYLRGN--QLQ-GE----IPEEL--GNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTGG 138 (180)
Q Consensus 73 --~l~~L~~l~l~~~--~~~-~~----~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~ 138 (180)
.+++|++|+++.+ ... .. ....+ ..+++|+.|++.+|.+.+..+..+ ..+++|++|+++.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6899999998632 111 00 11122 247899999999998864333222 3578999999999988753
Q ss_pred C---CcccccCCCCccEEEccCCcccCCCChhhh
Q 030257 139 I---IPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169 (180)
Q Consensus 139 ~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 169 (180)
. +...+..+++|+.|+++.|.+++.....+.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 1 222335578999999999988755444443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=1e-09 Score=80.91 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=34.3
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
.++...|.++.+|+.+++.++.+......+|. +.+|+.+.+..+ +.......|.++.+|+.+.+..
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 34444455555566666655555533333333 455666555533 3334445566666666666654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=5.1e-10 Score=73.98 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=67.8
Q ss_pred ccCCCCccEEEeccc-ccccc----cchhhhccCCccEEEeeCCcCCCCc----chhhcCCCcccEEEecCCcCCCC---
Q 030257 47 LSNCKRLRNISLSLD-DFSGT----IPKEIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRA--- 114 (180)
Q Consensus 47 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~--- 114 (180)
+...+.|++|++++| .+... ....+...++|++|++++|.+.... ...+...++|+.|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666665 55421 2233444566677777666654322 22334446677777777777543
Q ss_pred -ccccccCCCCCCeEEc--ccCcCCCCC---CcccccCCCCccEEEccCCccc
Q 030257 115 -IPSSIFNLSSLSNLDL--SVNNLTGGI---IPSLLGNQSSLQTLYLSYNQLS 161 (180)
Q Consensus 115 -~~~~l~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~ 161 (180)
+...+...++|++|++ ++|.+.+.. +...+...+.|+.|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344556667888888 677776431 2334556678888888888765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=1.2e-09 Score=72.26 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=87.8
Q ss_pred hhhcCCCccEEEcccc-cCCCC----CCccccCCCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCCCC--
Q 030257 22 FCNHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGE-- 90 (180)
Q Consensus 22 ~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~-- 90 (180)
+....+.|++|++++| .+.+. +...+...++|++|++++|.+... ....+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4455789999999999 87632 344566788999999999998743 334455678999999999998754
Q ss_pred --cchhhcCCCcccEEEe--cCCcCCCCc----cccccCCCCCCeEEcccCcCC
Q 030257 91 --IPEELGNLAELEMLWL--QNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT 136 (180)
Q Consensus 91 --~~~~~~~~~~L~~l~l--~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~ 136 (180)
....+...++|+.|++ ++|.+.+.. ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2445667788999999 889987543 344556689999999999875
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=2.2e-09 Score=78.02 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=99.9
Q ss_pred CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCcccc--CCCCccEEEeccc--cc-cc----ccchhh
Q 030257 1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS--NCKRLRNISLSLD--DF-SG----TIPKEI 71 (180)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~~-~~----~~~~~~ 71 (180)
+|+|+.|.+.++.-. .++. .. +++|++|.+..+.+.......+. .+++|+.|+++.+ .. .. .....+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 478999999987422 3343 23 88999999998877643333333 6899999998632 11 10 011122
Q ss_pred --hccCCccEEEeeCCcCCCCcchhh---cCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCCCcc
Q 030257 72 --GNVTKLIRLYLRGNQLQGEIPEEL---GNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPS 142 (180)
Q Consensus 72 --~~l~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~ 142 (180)
..+++|++|++.+|.+....+..+ ..+++|+.|+++.|.+.+.. ...+..+++|+.|+++.|.+++. ...
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~-~~~ 325 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE-MKK 325 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH-HHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH-HHH
Confidence 247899999999988753333222 35789999999999887643 23345679999999999988753 222
Q ss_pred cccC-CCCccEEEccCCc
Q 030257 143 LLGN-QSSLQTLYLSYNQ 159 (180)
Q Consensus 143 ~~~~-~~~L~~l~l~~n~ 159 (180)
.+.. + ...++++.++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 2322 2 2557887776
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.75 E-value=2.4e-09 Score=69.66 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=41.6
Q ss_pred CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCc-CCCCccccccCC----CCCCeEEcccCc-CCCCCCcccccCCCC
Q 030257 76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNL----SSLSNLDLSVNN-LTGGIIPSLLGNQSS 149 (180)
Q Consensus 76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 149 (180)
.|++++++++.++......+..+++|+.|++++|. +++.....+..+ ++|++|++++|. +++..+ ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 45555555555544444444555556666665553 333322233332 246666666653 554322 23445566
Q ss_pred ccEEEccCCc
Q 030257 150 LQTLYLSYNQ 159 (180)
Q Consensus 150 L~~l~l~~n~ 159 (180)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.75 E-value=1.3e-08 Score=66.24 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred CCccEEEecccccccccchhhhccCCccEEEeeCCc-CCCCcchhhcCC----CcccEEEecCCc-CCCCccccccCCCC
Q 030257 51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ-LQGEIPEELGNL----AELEMLWLQNNF-LTRAIPSSIFNLSS 124 (180)
Q Consensus 51 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~l~~~~~ 124 (180)
.+|+.|++++|.++......+..+++|++|++++|. ++......+..+ ++|+.|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467778888877765555566777888888888774 554444445443 368888888774 66655555667788
Q ss_pred CCeEEcccCc-CCC
Q 030257 125 LSNLDLSVNN-LTG 137 (180)
Q Consensus 125 L~~L~l~~~~-~~~ 137 (180)
|++|++++|. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8888888874 554
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=1.5e-06 Score=63.92 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=106.2
Q ss_pred CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257 2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY 81 (180)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 81 (180)
.+|+.+.+.... . .+....+.++..++.+.+..+... .....|..+..++.+......+ ....+..+.+|+.+.
T Consensus 230 ~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEE
T ss_pred CCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccc
Confidence 356666665433 2 455666677899999999876443 5566788888898888766543 334677889999999
Q ss_pred eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
+..+ +......++.+|.+|+.+++..+ +......+|.++.+|+.+.+..+ ++. ....++..|.+|+.+++..+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence 8765 44455678889999999999654 54344567888999999999776 432 24567888999999998765
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.41 E-value=2.7e-06 Score=62.55 Aligned_cols=109 Identities=13% Similarity=0.165 Sum_probs=45.7
Q ss_pred ccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCC
Q 030257 45 STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS 124 (180)
Q Consensus 45 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 124 (180)
.+|..+.+|+.+.+.+.... .....+.++..|+.+.+... +......+|.+|.+|+.+.+..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34444555555554433221 23334444555555544322 22222334445555555555432 22122234444555
Q ss_pred CCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 125 LSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
|+.+.+..+ ++. .-..++.+|.+|+.+++.++
T Consensus 336 L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTK-IPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCc
Confidence 555555432 221 12234445555555555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=4.9e-07 Score=62.90 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=58.8
Q ss_pred hccCCccEEEeeCCcCCCC--cchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCc-------
Q 030257 72 GNVTKLIRLYLRGNQLQGE--IPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIP------- 141 (180)
Q Consensus 72 ~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~------- 141 (180)
..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.+. ..+.+..+ +|++|++++|.+.+. ++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~-~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT-FRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG-CSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc-cCcchhHHH
Confidence 4678999999999998753 334566788999999999998764 12333444 899999999988742 22
Q ss_pred ccccCCCCccEEE
Q 030257 142 SLLGNQSSLQTLY 154 (180)
Q Consensus 142 ~~~~~~~~L~~l~ 154 (180)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2456778888886
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=7.4e-07 Score=61.99 Aligned_cols=69 Identities=30% Similarity=0.304 Sum_probs=54.6
Q ss_pred cCCCcccEEEecCCcCCC--CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257 96 GNLAELEMLWLQNNFLTR--AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165 (180)
Q Consensus 96 ~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 165 (180)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+++......+..+ +|+.|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 457899999999999987 3446667899999999999999854222233334 99999999999987666
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=7e-06 Score=60.33 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=83.2
Q ss_pred CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257 26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105 (180)
Q Consensus 26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~ 105 (180)
...|+.+.+.... ......+|..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccc
Confidence 5677777776542 2244456777888888888776443 45566777888888776654332 24567788888888
Q ss_pred ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
+..+ +......+|.++.+|+.+++..+ ++. ....++.+|.+|+.+.+..+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc
Confidence 8654 43333456778888888888654 331 23456778888888888766
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.32 E-value=5.9e-06 Score=60.33 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=81.5
Q ss_pred hhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCc
Q 030257 21 NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE 100 (180)
Q Consensus 21 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 100 (180)
..+.....++.+.+..+ +......+|..+..|+.+.+..+ +.......+.++..++.+.+..+ +......++..|++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444666777776544 22244455667777777777665 33344556677777777777554 33234456777777
Q ss_pred ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158 (180)
Q Consensus 101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n 158 (180)
|+.+.+.++.+.......|.++.+|+.+.+..+ ++. .-..++.+|.+|+.+.+..+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc
Confidence 877777766665444466777777777777654 321 23345667777777776543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.31 E-value=1.2e-05 Score=58.69 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=76.9
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 96 (180)
.+....+.++..|+.+.+..+ +......+|..+.+++.+.+..+ +.......|.++.+|+.+.+..+.++.....+|.
T Consensus 230 ~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~ 307 (379)
T 4h09_A 230 TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM 307 (379)
T ss_dssp EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT
T ss_pred EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhc
Confidence 344555556778888887664 44345566777888888887654 3334455677888888888877766645566788
Q ss_pred CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccC
Q 030257 97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133 (180)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 133 (180)
+|.+|+.+.+..+ +......+|.++.+|+.+.+..+
T Consensus 308 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8888888888644 43333456777788888777654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=3.6e-06 Score=61.89 Aligned_cols=135 Identities=15% Similarity=0.218 Sum_probs=95.7
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 96 (180)
.+....|.++..|+.+.+.+.... ....+|.++..|+.+.+... +.......|.++.+|+.+.+..+ ++.....+|.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 345566777899999999765433 55677889999999999753 44466678999999999999865 4445667899
Q ss_pred CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257 97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159 (180)
Q Consensus 97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 159 (180)
+|.+|+.+.+..+ ++.....+|.++.+|+.+++.++... . ..+..+.+|+.+.+..+.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---H-HTCBCCCCC---------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---h-hhhhccCCCCEEEeCCCC
Confidence 9999999999754 55445678899999999999887542 1 345667888888876654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=1.4e-05 Score=52.91 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCCCccEEEeccc-cccc----ccchhhhccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----
Q 030257 49 NCKRLRNISLSLD-DFSG----TIPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI---- 115 (180)
Q Consensus 49 ~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~---- 115 (180)
.-+.|++|+++++ .+.. ...+.+..-..|+.|++.+|.+... +.+.+..-+.|+.|++++|.+.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 4432 1233444556677777777665432 2223334466777777777775432
Q ss_pred cccccCCCCCCeEEcccCc---CCCC---CCcccccCCCCccEEEccCCcc
Q 030257 116 PSSIFNLSSLSNLDLSVNN---LTGG---IIPSLLGNQSSLQTLYLSYNQL 160 (180)
Q Consensus 116 ~~~l~~~~~L~~L~l~~~~---~~~~---~~~~~~~~~~~L~~l~l~~n~~ 160 (180)
.+.+..-..|++|+++++. +.+. .+...+...+.|..|+++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344455667778776542 2211 1233456667788888876653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=2.8e-05 Score=51.48 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred hcCCCccEEEcccc-cCCC----CCCccccCCCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCCCCc---
Q 030257 24 NHLSNLESLFLKNN-MFHG----KIPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEI--- 91 (180)
Q Consensus 24 ~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~--- 91 (180)
.+-+.|++|+++++ .+.+ .+..++..-+.|+.|++++|.+... +.+.+..-..|++|++++|.+....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44578999999985 6653 2445566778999999999998743 3344556789999999999987543
Q ss_pred -chhhcCCCcccEEEecCC---cCCCC----ccccccCCCCCCeEEcccCcC
Q 030257 92 -PEELGNLAELEMLWLQNN---FLTRA----IPSSIFNLSSLSNLDLSVNNL 135 (180)
Q Consensus 92 -~~~~~~~~~L~~l~l~~~---~~~~~----~~~~l~~~~~L~~L~l~~~~~ 135 (180)
.+++..-+.|+.|+++++ .+.+. +...+..-++|+.|++..+.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234555577999999765 33322 334555668899999987654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0019 Score=39.77 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=16.1
Q ss_pred ccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257 53 LRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86 (180)
Q Consensus 53 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 86 (180)
++.|++++|.++...++.|..+++|+++++.+|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444444434444444555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0018 Score=39.85 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=42.9
Q ss_pred EEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccc
Q 030257 6 SIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64 (180)
Q Consensus 6 ~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 64 (180)
.++.++..++ ..+|..+ -+++++|+|++|.+....+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666654 2466544 236899999999999777778889999999999999874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.29 E-value=2 Score=24.74 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=21.9
Q ss_pred cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecc
Q 030257 17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60 (180)
Q Consensus 17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 60 (180)
.+....|.++..|+.+.+..+ +......+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555555555543 2224444555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.51 E-value=1.7 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=21.6
Q ss_pred CCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257 40 HGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84 (180)
Q Consensus 40 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 84 (180)
+.....+|.+|.+|+.+.+..+- .......|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 33344555566666666655542 223334455555555555443
Done!