Query 030258
Match_columns 180
No_of_seqs 211 out of 729
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 4.6E-29 1E-33 205.2 16.1 152 1-154 3-161 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 1.9E-28 4.1E-33 200.5 11.7 118 7-126 3-121 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 4.3E-24 9.3E-29 157.0 12.2 104 7-111 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.7 2.3E-07 4.9E-12 67.4 11.0 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.4 0.0063 1.4E-07 45.4 12.7 109 7-128 2-119 (122)
6 PF14646 MYCBPAP: MYCBP-associ 94.9 0.2 4.4E-06 45.4 9.3 63 13-75 238-313 (426)
7 PRK09918 putative fimbrial cha 94.7 2.2 4.7E-05 35.7 15.3 110 6-131 25-139 (230)
8 PRK15249 fimbrial chaperone pr 94.4 1.4 3.1E-05 37.4 12.9 114 6-130 29-154 (253)
9 PRK15211 fimbrial chaperone pr 93.7 2.6 5.6E-05 35.5 12.9 110 7-129 24-139 (229)
10 PRK11385 putativi pili assembl 93.6 4 8.7E-05 34.5 14.5 111 7-131 28-150 (236)
11 PRK15299 fimbrial chaperone pr 93.5 3.1 6.7E-05 34.7 13.1 111 6-129 23-141 (227)
12 PRK15295 fimbrial assembly cha 93.4 3.1 6.7E-05 34.8 12.9 110 7-129 21-137 (226)
13 PF11614 FixG_C: IG-like fold 93.4 0.4 8.6E-06 35.6 6.8 52 24-75 33-86 (118)
14 PRK09926 putative chaperone pr 93.3 1.3 2.9E-05 37.4 10.7 116 6-130 26-151 (246)
15 PF07610 DUF1573: Protein of u 93.2 0.59 1.3E-05 29.2 6.4 43 28-71 2-45 (45)
16 PRK15290 lfpB fimbrial chapero 92.2 6.2 0.00014 33.5 13.3 111 7-129 39-157 (243)
17 PRK15246 fimbrial assembly cha 91.5 5.3 0.00012 33.6 12.0 114 7-130 12-135 (233)
18 PRK15192 fimbrial chaperone Bc 89.5 12 0.00026 31.6 14.1 107 7-130 24-144 (234)
19 COG3121 FimC P pilus assembly 87.7 15 0.00034 30.8 14.4 113 7-131 29-148 (235)
20 PRK15208 long polar fimbrial c 87.5 11 0.00024 31.5 10.9 112 6-129 22-139 (228)
21 PRK15254 fimbrial chaperone pr 85.8 21 0.00044 30.3 14.7 109 7-129 18-134 (239)
22 PF06280 DUF1034: Fn3-like dom 85.6 2.5 5.3E-05 31.0 5.4 54 22-75 8-82 (112)
23 PRK15195 fimbrial chaperone pr 84.7 22 0.00048 29.7 13.2 113 7-130 27-145 (229)
24 PRK15188 fimbrial chaperone pr 83.8 25 0.00054 29.6 14.9 113 7-131 29-147 (228)
25 PRK15218 fimbrial chaperone pr 81.4 31 0.00067 28.9 14.3 111 8-130 21-141 (226)
26 TIGR03079 CH4_NH3mon_ox_B meth 80.2 4.3 9.2E-05 36.8 5.6 54 20-73 280-354 (399)
27 smart00809 Alpha_adaptinC2 Ada 77.2 16 0.00035 25.8 7.1 54 21-74 17-74 (104)
28 PF04744 Monooxygenase_B: Mono 75.0 14 0.00031 33.4 7.4 65 7-73 249-335 (381)
29 PF05506 DUF756: Domain of unk 74.8 13 0.00029 26.0 6.0 46 24-72 20-66 (89)
30 PF10633 NPCBM_assoc: NPCBM-as 74.5 4.7 0.0001 27.6 3.4 56 21-76 4-63 (78)
31 PRK15274 putative periplasmic 72.0 63 0.0014 27.7 14.3 104 12-129 33-144 (257)
32 PF00927 Transglut_C: Transglu 71.2 16 0.00035 26.2 5.9 56 19-74 12-77 (107)
33 PRK15224 pili assembly chapero 71.2 63 0.0014 27.3 11.7 77 12-96 35-118 (237)
34 PRK15253 putative fimbrial ass 67.8 75 0.0016 26.9 11.9 109 9-129 37-155 (242)
35 PF02753 PapD_C: Pili assembly 65.5 5.9 0.00013 26.3 2.3 43 28-70 1-44 (68)
36 PRK15308 putative fimbrial pro 64.9 84 0.0018 26.6 9.7 83 6-96 17-117 (234)
37 TIGR02745 ccoG_rdxA_fixG cytoc 64.8 47 0.001 30.6 8.7 67 23-91 347-415 (434)
38 PRK15285 putative fimbrial cha 64.6 89 0.0019 26.6 14.4 104 12-129 32-143 (250)
39 PF11611 DUF4352: Domain of un 62.9 34 0.00073 24.6 6.2 54 21-74 35-102 (123)
40 PRK15233 putative fimbrial cha 61.4 1E+02 0.0022 26.3 12.0 79 12-96 47-130 (246)
41 PF02883 Alpha_adaptinC2: Adap 59.0 22 0.00048 25.7 4.6 73 21-94 23-101 (115)
42 PF03173 CHB_HEX: Putative car 55.0 15 0.00032 29.4 3.3 34 40-73 69-104 (164)
43 PF00553 CBM_2: Cellulose bind 50.7 28 0.0006 25.1 3.9 50 24-73 15-84 (101)
44 PF05753 TRAP_beta: Translocon 50.5 94 0.002 25.2 7.3 54 20-74 36-98 (181)
45 smart00637 CBD_II CBD_II domai 49.1 88 0.0019 21.8 6.6 24 48-71 50-75 (92)
46 PF12690 BsuPI: Intracellular 45.9 1E+02 0.0022 21.6 6.4 21 24-44 2-22 (82)
47 PF06030 DUF916: Bacterial pro 43.1 59 0.0013 24.5 4.8 26 18-43 23-48 (121)
48 COG3121 FimC P pilus assembly 42.8 67 0.0015 26.9 5.6 43 26-70 165-209 (235)
49 PF13473 Cupredoxin_1: Cupredo 38.8 1.4E+02 0.0031 21.1 7.1 53 8-72 31-83 (104)
50 PF07705 CARDB: CARDB; InterP 38.3 1.1E+02 0.0023 20.8 5.2 54 21-74 18-72 (101)
51 PRK15249 fimbrial chaperone pr 37.7 80 0.0017 26.8 5.3 42 27-69 177-219 (253)
52 PF10342 GPI-anchored: Ser-Thr 35.4 1.4E+02 0.0031 20.2 7.3 59 11-70 14-77 (93)
53 PF11906 DUF3426: Protein of u 34.0 1.5E+02 0.0033 22.3 5.9 53 21-73 67-136 (149)
54 PF09640 DUF2027: Domain of un 33.3 79 0.0017 25.5 4.2 68 24-98 18-85 (162)
55 PF08402 TOBE_2: TOBE domain; 32.7 1.3E+02 0.0029 19.0 6.9 65 7-71 1-69 (75)
56 PF13205 Big_5: Bacterial Ig-l 31.4 1.8E+02 0.0039 20.1 7.1 57 13-72 26-85 (107)
57 COG1470 Predicted membrane pro 31.1 4.7E+02 0.01 24.8 10.8 86 6-95 381-470 (513)
58 smart00605 CW CW domain. 30.6 69 0.0015 22.5 3.2 22 27-48 58-80 (94)
59 PRK15295 fimbrial assembly cha 28.6 1.4E+02 0.003 24.9 5.2 39 27-69 158-197 (226)
60 PRK09926 putative chaperone pr 28.5 1.8E+02 0.0039 24.4 5.9 43 26-70 173-217 (246)
61 PRK15192 fimbrial chaperone Bc 28.5 1.4E+02 0.003 25.2 5.2 39 27-69 163-202 (234)
62 PRK15246 fimbrial assembly cha 27.8 1.5E+02 0.0032 24.9 5.3 39 27-69 154-192 (233)
63 TIGR02656 cyanin_plasto plasto 27.6 2.2E+02 0.0049 20.1 6.0 61 5-71 10-76 (99)
64 KOG3865 Arrestin [Signal trans 27.5 93 0.002 28.0 4.1 69 1-73 190-276 (402)
65 PF14796 AP3B1_C: Clathrin-ada 27.3 2.7E+02 0.0059 21.9 6.3 58 14-71 73-138 (145)
66 PF08277 PAN_3: PAN-like domai 27.1 81 0.0017 20.6 2.9 19 24-42 53-71 (71)
67 PF11668 Gp_UL130: HCMV glycop 22.8 2.2E+02 0.0049 22.7 5.0 43 14-56 102-154 (156)
68 PF06483 ChiC: Chitinase C; I 22.7 1E+02 0.0022 25.3 3.2 26 36-72 116-141 (180)
69 PRK15224 pili assembly chapero 22.5 2.1E+02 0.0046 24.1 5.2 39 27-69 170-209 (237)
70 cd06409 PB1_MUG70 The MUG70 pr 21.5 59 0.0013 23.4 1.4 21 39-59 2-24 (86)
71 PRK15299 fimbrial chaperone pr 20.8 2.1E+02 0.0047 23.7 4.9 39 27-69 161-200 (227)
72 PRK15290 lfpB fimbrial chapero 20.4 2.4E+02 0.0053 23.8 5.2 38 27-69 177-215 (243)
73 PRK09918 putative fimbrial cha 20.4 2.1E+02 0.0045 23.8 4.7 41 27-69 156-199 (230)
74 PRK15253 putative fimbrial ass 20.3 2.3E+02 0.005 23.9 5.1 49 13-69 166-215 (242)
75 KOG1769 Ubiquitin-like protein 20.3 1.4E+02 0.003 22.2 3.2 26 24-49 19-44 (99)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=205.22 Aligned_cols=152 Identities=41% Similarity=0.677 Sum_probs=125.5
Q ss_pred CCCCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 1 MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 1 m~~~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
|+.+.+|.|+|. +|.|++++.+++.|.|+|+|+++.++|||||||+|++|||||+.|+|.||+++.|.|.+|+....|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 456789999995 8999999998999999999999999999999999999999999999999999999999999888899
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccC--CCeeEEEEeEEEEe-cCCCCCCCCCC---CCCCCCCccccccCCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED--GKVVEEFKLRVVYI-PANPPSPVPEG---SEEGSSPRAFSQENGN 153 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~--~~~v~e~KLrV~~~-p~~~~s~v~~~---~e~~~s~~~~~~~~~~ 153 (180)
|++|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|+ |..+++....+ ...+........++..
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKE 160 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccc
Confidence 999999999999999986 33343 36677655 78999999999999 66666555444 4444444444444333
Q ss_pred C
Q 030258 154 H 154 (180)
Q Consensus 154 ~ 154 (180)
.
T Consensus 161 ~ 161 (218)
T KOG0439|consen 161 A 161 (218)
T ss_pred c
Confidence 3
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.9e-28 Score=200.49 Aligned_cols=118 Identities=40% Similarity=0.633 Sum_probs=108.4
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCC-CCCCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKD 85 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p-~d~~~kD 85 (180)
|+|+|. +.|..|+..+.+|.+.|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 456664 56666999999999999999999999999999999999999999999999999999999999887 6999999
Q ss_pred eEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEe
Q 030258 86 KFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (180)
Q Consensus 86 KFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~ 126 (180)
|||||+...+.+.+..|+. ++|....+.-+.+.||||+|.
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvys 121 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYS 121 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEee
Confidence 9999999999888878885 999988877899999999999
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=4.3e-24 Score=156.96 Aligned_cols=104 Identities=42% Similarity=0.654 Sum_probs=83.2
Q ss_pred EEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCC
Q 030258 7 VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKD 85 (180)
Q Consensus 7 L~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kD 85 (180)
|.|+|. .|.|..++++...+.|+|+|.++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+... .+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~~-~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSNK-KKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTST-SSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCCC-CCC
Confidence 789999 699999999999999999999999999999999999999999999999999999999999976555432 399
Q ss_pred eEEEEEEEcCCCCC-cccccccccccc
Q 030258 86 KFLLLSVVAPDGAT-AKDIGPDMFTKE 111 (180)
Q Consensus 86 KFlVqs~~v~~~~~-~~di~~~~f~k~ 111 (180)
||+|+++.++++.. .++....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 99999999987653 223334667654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.73 E-value=2.3e-07 Score=67.37 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=61.9
Q ss_pred CcEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCC--CCcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 5 DLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTN--PKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 5 ~lL~I~P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT~--p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
..|.++|.+|.|-. ..+......|+|+|.+..++.|+|+.-. ...|.|.|..|+|.||+++.+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999964 6677889999999999999999997543 5689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.44 E-value=0.0063 Score=45.43 Aligned_cols=109 Identities=21% Similarity=0.334 Sum_probs=72.7
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC---C------CcEEEeCCceEeCCCCeEEEEEEecCCccC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN---P------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~---p------~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~ 77 (180)
|.|.|..+.|... .....++|+|.++.++.+.+.... . ..+.|-|..-.|+||+...|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788999999863 358899999999999999987654 1 2699999999999999999999 4432 23
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecC
Q 030258 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPA 128 (180)
Q Consensus 78 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~ 128 (180)
+.+-...-++.|..+.... ...+ .+..-.....+.++|.|.|.
T Consensus 77 ~~~~E~~yrl~~~~iP~~~--~~~~------~~~~v~i~~~~~i~v~~rP~ 119 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSE--AENE------SKNGVQIALRYSIPVFYRPA 119 (122)
T ss_dssp -SSS-EEEEEEEEEEESCC--TTSS------SSSEEEEEEEEEEEEEEEET
T ss_pred CCCceEEEEEEEEEEeccc--cccc------ccceEEEEEEEEEEEEECch
Confidence 4442233344444444433 1000 11111355678888888765
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=94.86 E-value=0.2 Score=45.43 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=52.4
Q ss_pred eeEEeccCCCceEEEEE-EEcCCCCeEEEEEEeCC------------CCcEEEeCCceEeCCCCeEEEEEEecCCc
Q 030258 13 ELKFPFELKKQSSCSMQ-LTNKTDKFVAFKVKTTN------------PKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 13 eL~F~~~~~k~~~~~l~-L~N~s~~~vAFKVKTT~------------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
.|.|.-..+......|. |.|.+...|-|..+--. ...|......|+|.||++..+.|++++.+
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888766666666666 99999999999976433 35799999999999999999999999864
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.73 E-value=2.2 Score=35.74 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=72.3
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC-----CcEEEeCCceEeCCCCeEEEEEEecCCccCCCC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p-----~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d 80 (180)
-|.+.|..+.|... .....++|.|.++.++...+..... .-|.|.|+.-.|+||+...|.|.... ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 36777888888763 3578999999999876666654322 25999999999999999999998774 24444
Q ss_pred CCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 030258 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (180)
Q Consensus 81 ~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~~ 131 (180)
. ---|.+....+++... + +..=......++++-|.|..-+
T Consensus 100 r--Es~f~l~v~~IP~~~~--~-------~~~l~ia~r~~iklfyRP~~l~ 139 (230)
T PRK09918 100 T--EHLLRVSFEGVPPKPG--G-------KNKVVMPIRQDLPVLIQPAALP 139 (230)
T ss_pred e--eEEEEEEEEEcCCCCC--C-------CCEEEEEEEeEEEEEEeCCCCC
Confidence 2 2234454455554211 0 0011244566788888876543
No 8
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=94.39 E-value=1.4 Score=37.42 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=70.9
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC-----------CcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----------KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p-----------~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
-|.|.|..+.|+.. .....|+|.|.++.++.....+.+. .-|.|-|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 37788888999753 3577999999998876655543221 139999999999999999999998742
Q ss_pred ccCCCCCCCCCeEEEEEEEcCCCCCccccccccccccC-CCeeEEEEeEEEEecCCC
Q 030258 75 KEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED-GKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 75 ~~~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~-~~~v~e~KLrV~~~p~~~ 130 (180)
...|.|.. --|-+....+|+... +-. .+.. =......+|++-|.|..-
T Consensus 106 ~~lP~DRE--Slf~lnv~eIP~~~~--~~~----~~~n~l~ialr~~IKLFyRP~~L 154 (253)
T PRK15249 106 KKLPQDRE--SVFWFNVLQVPPTNI--GSD----SGQNKMLVMLRSRIKLFYRPDGL 154 (253)
T ss_pred CCCCCCce--EEEEEEeeecCCCCc--ccc----cccceEEEEeeeEEEEEEccccC
Confidence 23454422 223333334443211 000 0111 124457778888877654
No 9
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=93.67 E-value=2.6 Score=35.48 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=69.3
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC------CCcEEEeCCceEeCCCCeEEEEEEecCCccCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d 80 (180)
|.+.+..+.|+.. .....++|.|.++++..-...... ..-|.|.|+.-.|+||+...|.|..... ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677777888753 357899999999886544433211 1249999999999999999999998753 34554
Q ss_pred CCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 81 ~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
- -.-|-+....+|+.....+ ...=......+|++-|.|..
T Consensus 100 R--ESlf~lnv~~IP~~~~~~~-------~n~l~iair~~iKLfyRP~~ 139 (229)
T PRK15211 100 R--ESLFWLNVQEIPPKPKASE-------GNVLAVALNTQVKLIYRPKA 139 (229)
T ss_pred c--eEEEEEEEEEcCCCCCccc-------cceEEEEEEeeeeeEEcchh
Confidence 2 2334444445554211000 00012445777888888654
No 10
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=93.58 E-value=4 Score=34.48 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=70.4
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeC------------CCCcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT------------NPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT------------~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
|.+++..+.|+.. .....++|.|.++++..-..... ...-|.|-|+.--|+||+...|.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 5667777888753 35789999999998644333211 11249999999999999999999988753
Q ss_pred ccCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 030258 75 KEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (180)
Q Consensus 75 ~~~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~~ 131 (180)
...|.| .-.-|-+....+|+... + +..=......+|++-|.|..-+
T Consensus 105 ~~LP~D--RESlf~lnv~~IPp~~~--~-------~n~L~iair~riKLFyRP~~L~ 150 (236)
T PRK11385 105 DILPVD--RETLFELSIASVPSGKV--E-------NQSVKVAMRSVFKLFWRPEGLP 150 (236)
T ss_pred CCCCCC--ceEEEEEEEEecCCCcC--C-------CceEEEEEEeeEEEEEcccccC
Confidence 235554 23344444445554211 0 0001244577888888876543
No 11
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=93.52 E-value=3.1 Score=34.73 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=70.6
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC--------CCcEEEeCCceEeCCCCeEEEEEEecCCccC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~--------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~ 77 (180)
-|.|.|..+.|+.. .....|+|.|.++.++.-...... ..-|.|-|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 37788888999764 357899999998876655544322 1249999999999999999999987752 34
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 78 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
|.|- -.-|-+....+|+... +- . . ..=......+|++.|.|+.
T Consensus 99 P~Dr--Eslf~lnv~eIP~~~~--~~--~--~-n~l~iavr~riKLfyRP~~ 141 (227)
T PRK15299 99 PEDR--ESLYWLDIKSIPSSNP--DN--K--H-NTLMLAVKAEFKLIYRPKA 141 (227)
T ss_pred CCcc--eEEEEEEeEecCCCCc--cc--c--c-ceEEEEEeeeeeEEEcccc
Confidence 5442 2335555555554211 10 0 0 0012345667788888654
No 12
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=93.41 E-value=3.1 Score=34.80 Aligned_cols=110 Identities=13% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~-------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
|.+.+..+.|+.. .....|+|.|.++.++.-...... ..-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP~ 96 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLPA 96 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 6777888888763 347899999999876443332221 1249999999999999999999987642 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
|. ---|-+....+++... + + .+..=......+|++-|.|..
T Consensus 97 Dr--Eslf~lnv~~IP~~~~--~---~--~~n~l~iair~rIKLFyRP~~ 137 (226)
T PRK15295 97 DR--ESMYWLNIKGIPSIDD--N---A--SANRVEISINTQIKLIYRPPA 137 (226)
T ss_pred Cc--eEEEEEEEEEcCCCCC--c---C--ccceEEEEeeeeeeEEEchhh
Confidence 42 2234444445554211 0 0 000012345667788887654
No 13
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.41 E-value=0.4 Score=35.57 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=36.5
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCce-EeCCCCeEEEEEEecCCc
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTG-IILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~V-rP~~G-vI~P~~s~~V~Vt~q~~~ 75 (180)
-...|+|.|++.++..|.|+...+..+.+ .|... -|.||++..+.|.+....
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 35799999999999999999888778888 66444 489999999988887653
No 14
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=93.34 E-value=1.3 Score=37.40 Aligned_cols=116 Identities=14% Similarity=0.238 Sum_probs=72.8
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCC----------cEEEeCCceEeCCCCeEEEEEEecCCc
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPK----------KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~----------~Y~VrP~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
-|.|.|..+.|+.. .....|+|.|.++.++.-.......+ -|.|-|+.-.|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 37788888999763 35789999999998877666554321 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 76 ~~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
..|.|. ---|-+....+|+.....+-. . +..=......+|++-|.|..-
T Consensus 103 ~lP~Dr--ESlf~lnv~eIP~~~~~~~~~-~---~n~l~iair~~IKLFyRP~~l 151 (246)
T PRK09926 103 ALPKDR--ESVFWFNVLEVPPKPDAEKVA-N---QSLLQLAFRTRIKLFYRPDGL 151 (246)
T ss_pred CCCCCc--eEEEEEEeeecCCCCcccccc-c---cceEEEeeeeeEEEEEcCccC
Confidence 345442 222444444444321100000 0 000123457778888876654
No 15
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.24 E-value=0.59 Score=29.24 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred EEEEcCCCCeEE-EEEEeCCCCcEEEeCCceEeCCCCeEEEEEEe
Q 030258 28 MQLTNKTDKFVA-FKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (180)
Q Consensus 28 l~L~N~s~~~vA-FKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~ 71 (180)
++|+|.++.++. .+|+| +=+-..+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 579999997654 55654 56888888889999999999999874
No 16
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=92.22 E-value=6.2 Score=33.48 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=70.5
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCC-CeEEEEEEeCC---C----CcEEEeCCceEeCCCCeEEEEEEecCCccCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN---P----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~-~~vAFKVKTT~---p----~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p 78 (180)
|.+++..+.|+.. .....|+|.|.++ .+..-.....+ . .-|.|-|+.-.|+||+...|.|........|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778999753 3577999999986 45555554431 1 1399999999999999999999987533355
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 79 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
.|. -.-|-+....+|+... + .+ +..=......++++-|.|..
T Consensus 116 ~DR--ESlf~lnv~eIPp~~~--~--~~---~n~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPPSAS--N--KA---TNSLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred CCe--eEEEEEEEEEcCCCCc--c--cc---cceEEEEEEEeeeEEEeccc
Confidence 542 3334444445554211 0 00 00112445777888888654
No 17
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=91.54 E-value=5.3 Score=33.64 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=70.3
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC------CC----cEEEeCCceEeCCCCeEEEEEEecCCcc
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PK----KYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~------p~----~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~ 76 (180)
|.|.+..+.|+.. .....|+|.|.++.++.-.+.... |. -|.|-|+.-.|+||+...|.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6788888999763 357899999999886544443221 11 4999999999999999999999875333
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 77 ~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
.|.|. ---|-+....+++... +.. . .+..=......+|++-|.|..-
T Consensus 89 LP~DR--ESlf~lnv~~IP~~~~--~~~-~--~~~~l~iair~rIKlFyRP~~L 135 (233)
T PRK15246 89 LATDR--ESLFWLNIYQIPPVTQ--DIK-N--HPRKLVLPLRLRLKILIRPTGL 135 (233)
T ss_pred CCCCc--eEEEEEEEEEcCCCCc--ccc-c--ccceEEEEeeeEEEEEECCccc
Confidence 55442 2335555555554211 100 0 0000123456677777776643
No 18
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=89.52 E-value=12 Score=31.64 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=68.7
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeC----------C----CCcEEEeCCceEeCCCCeEEEEEEec
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT----------N----PKKYCVRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT----------~----p~~Y~VrP~~GvI~P~~s~~V~Vt~q 72 (180)
|.+....+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.-.|+||+...|.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5666677888763 357899999999886 555541 1 11399999999999999999999987
Q ss_pred CCccCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 73 AQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 73 ~~~~~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
.. ..|.| ----|-+....+|+... + +..=......+|++-|.|..-
T Consensus 99 ~~-~LP~D--RESlf~lnv~~IPp~~~--~-------~n~l~iair~riKlFYRP~~L 144 (234)
T PRK15192 99 GA-PLPAD--RESLFTLSIAAIPSGKP--E-------ANRVQMAFRSALKLLYRPEGL 144 (234)
T ss_pred CC-CCCCc--ceEEEEEEEEecCCCCC--C-------CcEEEEEEEeeeeEEEccccc
Confidence 53 34554 23344555555554211 0 000123456778888886643
No 19
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.70 E-value=15 Score=30.76 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=76.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~-------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
+.|.+..+.|+... ....|+|.|.++.++.-.+..-. ..-|.|-|..-.|+||+...|.|..++. ..|.
T Consensus 29 v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 56677778887653 47799999988899998866542 3459999999999999999999999986 3565
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~~ 131 (180)
| -..-|-+.--.+|+... +.... +. -......++++-|.|+.-.
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~--n~--lq~a~r~riKlf~RP~~l~ 148 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP--NV--LQLALRSRIKLFYRPAGLA 148 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc--ce--EEEEeeeeeeEEECcccCC
Confidence 5 34455555555554321 11100 00 1234577888888865433
No 20
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=87.54 E-value=11 Score=31.49 Aligned_cols=112 Identities=14% Similarity=0.244 Sum_probs=66.6
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCC--eEEEEEEeCC-C---CcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK--FVAFKVKTTN-P---KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~--~vAFKVKTT~-p---~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
-|.+.|..+.|+.. .....|+|.|.+++ .+....-... . .-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888999763 35789999999863 3443332221 1 139999999999999999999987642 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
|- ---|.+..-.+|+... . . + .+..=......+|++-|.|..
T Consensus 98 Dr--ESlf~lnv~eIP~~~~--~-~-~--~~n~l~ia~r~~IKlFyRP~~ 139 (228)
T PRK15208 98 DR--ESVYWINVKAIPAKSE--D-A-E--NKNVLQIAVRTRLKLFYRPAG 139 (228)
T ss_pred Ce--eEEEEEEEEEcCCCCC--C-c-c--ccceEEEEeeeeeeEEEchhh
Confidence 42 2224444444443211 0 0 0 000012345667777777654
No 21
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=85.81 E-value=21 Score=30.27 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=66.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeC--CC---CcEEEeCCceEeCCCCeEEEEEEecC--CccCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--NP---KKYCVRPNTGIILPRTSCAVTVTMQA--QKEAP 78 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKTT--~p---~~Y~VrP~~GvI~P~~s~~V~Vt~q~--~~~~p 78 (180)
|.+.+..+.|+.. .....++|.|.+++ ++.-..... .. .-|.|-|+.-.|+||+...|.|.... ....|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 5677778888753 35789999999863 444333221 11 24999999999999999999998763 23345
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 79 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
.|. -.-|-+....+|+... + .. .=......+|++-|.|..
T Consensus 95 ~DR--ESlf~lnv~~IP~~~~--~--~n-----~L~iair~~iKLFyRP~~ 134 (239)
T PRK15254 95 QDR--ETLFWFNVRGVPPKPE--D--DN-----VLQLAMQSQLKLFYRPKA 134 (239)
T ss_pred CCc--eEEEEEEEEEcCCCCC--C--Cc-----eEEEEEEeEEeEEEcccc
Confidence 542 3334444445554210 0 00 012235677777777654
No 22
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=85.63 E-value=2.5 Score=30.99 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=33.5
Q ss_pred CceEEEEEEEcCCCCeEEEEEEeC-----C---CCcEEE--e-----------CCceEeCCCCeEEEEEEecCCc
Q 030258 22 KQSSCSMQLTNKTDKFVAFKVKTT-----N---PKKYCV--R-----------PNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 22 k~~~~~l~L~N~s~~~vAFKVKTT-----~---p~~Y~V--r-----------P~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
...+..|+|+|.+++.+-|++.-. . .+.|.. . |..=.|.||++.+|.|++....
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 346789999999999999997654 1 122221 1 2223588999999999998743
No 23
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=84.70 E-value=22 Score=29.74 Aligned_cols=113 Identities=11% Similarity=0.202 Sum_probs=67.5
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC--eEEEEEEeCC----CCcEEEeCCceEeCCCCeEEEEEEecCCccCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK--FVAFKVKTTN----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~--~vAFKVKTT~----p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d 80 (180)
|.|.+..+.|+... ....++|.|.+++ +++...-... ..-|.|-|..--|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 67788888887543 3589999999864 4433221111 1259999999999999999999988642 24444
Q ss_pred CCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 81 ~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
. -.-|-+....+|+.... ... .+..=......+|++-|.|..-
T Consensus 103 r--ESlf~Lnv~eIP~~~~~-~~~----~~n~l~iair~~iKlFyRP~~l 145 (229)
T PRK15195 103 R--ESLFWMNVKAIPSVDKN-ALE----GRNVLQLAILSRIKLFVRPINL 145 (229)
T ss_pred e--eEEEEEEeeecCCCCcc-ccc----ccceEEEEEEeEEEEEEccccc
Confidence 2 22244444444432110 000 0000134467788888887644
No 24
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=83.77 E-value=25 Score=29.56 Aligned_cols=113 Identities=14% Similarity=0.276 Sum_probs=69.1
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC--eEEEEEE-eCCC---CcEEEeCCceEeCCCCeEEEEEEecCCccCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK--FVAFKVK-TTNP---KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~--~vAFKVK-TT~p---~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d 80 (180)
|.+.+..+.|+.. .....++|+|.+++ ++....- .... .-|.|.|+.-.|+||+...|.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6777788888763 35789999999864 3333321 1111 249999999999999999999988753 34544
Q ss_pred CCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 030258 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (180)
Q Consensus 81 ~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~~ 131 (180)
.-.-|-+....+++.... +. .+..=......++++-|.|..-+
T Consensus 105 --RESlf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~~l~ 147 (228)
T PRK15188 105 --RESVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPKNLA 147 (228)
T ss_pred --ceEEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCccCC
Confidence 223344444455542110 00 00011244577888888876543
No 25
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=81.38 E-value=31 Score=28.93 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=66.9
Q ss_pred EEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEecCCccC
Q 030258 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (180)
Q Consensus 8 ~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p----------~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~ 77 (180)
.+.=..+.|+. .....+++|.|.++.+..-....... .-|.|.|+.-.|+||+...|.|..... ..
T Consensus 21 ~l~~TRvIy~~---~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 96 (226)
T PRK15218 21 YIYGTRIIYPA---QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-NL 96 (226)
T ss_pred EeCceEEEEcC---CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 33434577765 23567999999998763333322221 149999999999999999999997643 35
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 78 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
|.| .---|-+....+|+... + . + .+..=......++++-|.|..-
T Consensus 97 P~D--RESlfwlnv~~IPp~~~--~-~-~--~~n~L~iairtrIKLfYRP~~L 141 (226)
T PRK15218 97 PGD--RESLFYLNVLDIPPNSD--E-N-K--DKNIIKFALQNRIKLIYRPPGV 141 (226)
T ss_pred Ccc--eeEEEEEEEEEcCCCCC--C-c-C--cCcEEEEEeeeEEEEEEccccc
Confidence 554 23345555555555211 0 0 0 0000124457778888887643
No 26
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=80.22 E-value=4.3 Score=36.77 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEEeC------CC-CcEEEeCCce--------------EeCCCCeEEEEEEecC
Q 030258 20 LKKQSSCSMQLTNKTDKFVAFKVKTT------NP-KKYCVRPNTG--------------IILPRTSCAVTVTMQA 73 (180)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~vAFKVKTT------~p-~~Y~VrP~~G--------------vI~P~~s~~V~Vt~q~ 73 (180)
.++..+-+++|+|.++++|-.+==+| || ..|...|+.. -|.||+|.+|.|..|.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 35778889999999999998773333 34 3344444332 2899999999999885
No 27
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=77.16 E-value=16 Score=25.84 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=39.3
Q ss_pred CCceEEEEEEEcCCCCeEE-EEEEeCCCCcEEEe--CCce-EeCCCCeEEEEEEecCC
Q 030258 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPKKYCVR--PNTG-IILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~vA-FKVKTT~p~~Y~Vr--P~~G-vI~P~~s~~V~Vt~q~~ 74 (180)
+......+...|.+..++- |.+.-..|+-+.++ |..| .|.||+.+...+.+.+.
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3467889999999987765 77777777766655 5544 78898887777776653
No 28
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=74.97 E-value=14 Score=33.41 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=40.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcE----------------------EEeCCceEeCCCCe
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPRTS 64 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y----------------------~VrP~~GvI~P~~s 64 (180)
+.++-.+-.|.-+ ++...-+|+++|.++++|-..==+|+.-+| .|.|+. -|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-PIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-CcCCCce
Confidence 4444445566544 678899999999999998877444443333 344443 4899999
Q ss_pred EEEEEEecC
Q 030258 65 CAVTVTMQA 73 (180)
Q Consensus 65 ~~V~Vt~q~ 73 (180)
.+|.|++|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999875
No 29
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=74.82 E-value=13 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEE-EeCCceEeCCCCeEEEEEEec
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYC-VRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~-VrP~~GvI~P~~s~~V~Vt~q 72 (180)
..-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+.+-+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEeec
Confidence 36689999999999999998621 21 223333455588877777663
No 30
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=74.51 E-value=4.7 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCceEEEEEEEcCCCCeE-EEEEEeCCCCcEE--EeCCc-eEeCCCCeEEEEEEecCCcc
Q 030258 21 KKQSSCSMQLTNKTDKFV-AFKVKTTNPKKYC--VRPNT-GIILPRTSCAVTVTMQAQKE 76 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~v-AFKVKTT~p~~Y~--VrP~~-GvI~P~~s~~V~Vt~q~~~~ 76 (180)
+....-.++|+|.+...+ ..++.-..|.-+. +.|.. +-|.||++..+.+++.+...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 345677899999987442 2444444577666 55553 47999999999999987543
No 31
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=72.02 E-value=63 Score=27.69 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=62.7
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeCCC------CcEEEeCCceEeCCCCeEEEEEEecC-CccCCCCCCC
Q 030258 12 SELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTNP------KKYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPDFQC 83 (180)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKTT~p------~~Y~VrP~~GvI~P~~s~~V~Vt~q~-~~~~p~d~~~ 83 (180)
..+.|+.. ....+|+|.|.++. +..-....... .-|.|.|+.-.|+||+...|.|...+ ....|.| -
T Consensus 33 TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D--R 107 (257)
T PRK15274 33 TRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD--R 107 (257)
T ss_pred eEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc--e
Confidence 35777652 35789999999865 44433322111 14999999999999999999999775 2345544 2
Q ss_pred CCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 84 kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
---|-+....+|+.. +- ...=......+|++-|.|..
T Consensus 108 ESlFwlNv~eIPp~~---~~------~n~L~iairtrIKLFYRP~~ 144 (257)
T PRK15274 108 ESLFYFNVREIPPKS---DK------PNTLQLALQTRIKFFYRPVA 144 (257)
T ss_pred eEEEEEEEEEcCCCC---Cc------CceEEEEeeeeeeeEEcccc
Confidence 233444555555421 10 00012345667777777654
No 32
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=71.21 E-value=16 Score=26.22 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=40.1
Q ss_pred cCCCceEEEEEEEcCCCCe--------EEEEEEeCCCC--cEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 19 ELKKQSSCSMQLTNKTDKF--------VAFKVKTTNPK--KYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 19 ~~~k~~~~~l~L~N~s~~~--------vAFKVKTT~p~--~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
..++.....++++|+++.. .++-|--|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 3567889999999999877 56666554332 25677888999999999999999874
No 33
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=71.15 E-value=63 Score=27.33 Aligned_cols=77 Identities=9% Similarity=0.159 Sum_probs=52.4
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe----CCC---CcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCC
Q 030258 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT----TNP---KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (180)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKT----T~p---~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~k 84 (180)
..+.|+. .....+|+|.|.++.+ |-|++ ... .-|.|.|+.-.|+|++...|.|..... ..|.| --
T Consensus 35 TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~D--RE 106 (237)
T PRK15224 35 TRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD--RE 106 (237)
T ss_pred eEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCc--ee
Confidence 3577765 2357799999998876 54444 111 139999999999999999999998742 45654 22
Q ss_pred CeEEEEEEEcCC
Q 030258 85 DKFLLLSVVAPD 96 (180)
Q Consensus 85 DKFlVqs~~v~~ 96 (180)
--|-+....+|+
T Consensus 107 SlFwlnv~~IPp 118 (237)
T PRK15224 107 TLQWVCIKAVPP 118 (237)
T ss_pred EEEEEEEEEcCC
Confidence 335555555554
No 34
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=67.81 E-value=75 Score=26.90 Aligned_cols=109 Identities=13% Similarity=0.253 Sum_probs=64.6
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEecCCccCC
Q 030258 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (180)
Q Consensus 9 I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p----------~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p 78 (180)
+.=..+.|+.. ....+++|.|.++.+..-.....+. .-|.|-|+.-.|+|++...|.|..... ..|
T Consensus 37 l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~LP 112 (242)
T PRK15253 37 IYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SLP 112 (242)
T ss_pred eCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CCC
Confidence 33345777653 3567999999998764433322211 149999999999999999999987643 355
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 79 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
.| ----|-+....+|+... + . + .+..=......++++-|.|..
T Consensus 113 ~D--RESlfwlnv~~IPp~~~--~-~-~--~~n~l~iairtriKLFYRP~~ 155 (242)
T PRK15253 113 DN--KESLFYLNVLDIPPNSQ--E-N-A--GKNVLKFAMQNRIKLIWRPSR 155 (242)
T ss_pred cc--eeEEEEEEEEEcCCCCC--C-c-C--cCcEEEEEeeeEEEEEEcchh
Confidence 54 22334455555554211 0 0 0 000012345677777787654
No 35
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=65.52 E-value=5.9 Score=26.28 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=26.9
Q ss_pred EEEEcCCCCeEEEEE-EeCCCCcEEEeCCceEeCCCCeEEEEEE
Q 030258 28 MQLTNKTDKFVAFKV-KTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (180)
Q Consensus 28 l~L~N~s~~~vAFKV-KTT~p~~Y~VrP~~GvI~P~~s~~V~Vt 70 (180)
|++.|+|..+|.|-- +....++=..-...++|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 689999999999874 4443333222344449999999887763
No 36
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=64.95 E-value=84 Score=26.59 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=59.3
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe---CCC---------------CcEEEeCCceEeCCCCeEEE
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT---TNP---------------KKYCVRPNTGIILPRTSCAV 67 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKT---T~p---------------~~Y~VrP~~GvI~P~~s~~V 67 (180)
-|.|.|-.+.+... .+....++|.|.++.+..++|+. ++| ..-.+-|..-.|.||++..|
T Consensus 17 ~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 36788888877542 24578999999999888777642 232 13678899999999999999
Q ss_pred EEEecCCccCCCCCCCCCeEEEEEEEcCC
Q 030258 68 TVTMQAQKEAPPDFQCKDKFLLLSVVAPD 96 (180)
Q Consensus 68 ~Vt~q~~~~~p~d~~~kDKFlVqs~~v~~ 96 (180)
.|..... ++ .-.-|.|...++++
T Consensus 95 Rli~lg~----~~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 95 RVISLQA----PE--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEcCC----CC--cEEEEEEEEEecCC
Confidence 9886652 22 24456666676664
No 37
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.84 E-value=47 Score=30.65 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=44.0
Q ss_pred ceEEEEEEEcCCCCeEEEEEEeCCCCcEEEe-C-CceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEE
Q 030258 23 QSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-P-NTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLS 91 (180)
Q Consensus 23 ~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~Vr-P-~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs 91 (180)
.-...++|.|++.++..|.++........+. + +.=.|+||+..++.|++........ ..++.|.|..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v 415 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRA 415 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEE
Confidence 3567999999999988888887654433332 2 3458999999988888776432222 2345455443
No 38
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=64.64 E-value=89 Score=26.61 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=61.8
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEe--CCCC----cEEEeCCceEeCCCCeEEEEEEecC-CccCCCCCCC
Q 030258 12 SELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKT--TNPK----KYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPDFQC 83 (180)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKT--T~p~----~Y~VrP~~GvI~P~~s~~V~Vt~q~-~~~~p~d~~~ 83 (180)
..+.|+. ......++|.|.++. +..-.... ...+ -|.|-|+.-.|+||+...|.|.... ....|.| .
T Consensus 32 TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D--R 106 (250)
T PRK15285 32 TRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD--R 106 (250)
T ss_pred cEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC--c
Confidence 3577765 335779999999865 43322221 1211 3999999999999999999999775 2345554 2
Q ss_pred CCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 84 kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
---|-+....+|+... . +..=......+|++-|.|..
T Consensus 107 ESlfwlnv~~IPp~~~--~-------~n~L~iairtrIKLfYRP~~ 143 (250)
T PRK15285 107 ETLFYYNVREIPPQSD--K-------PNTLQIALQTRIKVFYRPQA 143 (250)
T ss_pred eEEEEEEEEEcCCCCC--C-------CcEEEEEeeeeeeEEECccc
Confidence 2334444445554210 0 00012344667777777654
No 39
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=62.92 E-value=34 Score=24.59 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCceEEEEEEEcCCCCeEE-----EEEEeCCCCcEEEeC---------CceEeCCCCeEEEEEEecCC
Q 030258 21 KKQSSCSMQLTNKTDKFVA-----FKVKTTNPKKYCVRP---------NTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~vA-----FKVKTT~p~~Y~VrP---------~~GvI~P~~s~~V~Vt~q~~ 74 (180)
++-+.-.++|+|.+++.+. |++.+.+-+.|.... ..+-|.||+++...|.+...
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 3457789999999998776 678877777777554 34789999999998888753
No 40
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=61.43 E-value=1e+02 Score=26.26 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=51.3
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeC--C---CCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCe
Q 030258 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT--N---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (180)
Q Consensus 12 ~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT--~---p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDK 86 (180)
..+.|+.. ....+|+|.|.++.+..-..... . ..-|.|.|+.-.|+|++...|.|..... ..|.|. ---
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR--ESl 120 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE--ESL 120 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc--eEE
Confidence 34666543 25789999998877633222211 1 1149999999999999999999998753 355541 223
Q ss_pred EEEEEEEcCC
Q 030258 87 FLLLSVVAPD 96 (180)
Q Consensus 87 FlVqs~~v~~ 96 (180)
|-+....+|+
T Consensus 121 fwlnv~~IPp 130 (246)
T PRK15233 121 YWLCVKGVPP 130 (246)
T ss_pred EEEEEEEcCC
Confidence 5555555555
No 41
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=58.99 E-value=22 Score=25.73 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=42.1
Q ss_pred CCceEEEEEEEcCCCCeEE-EEEEeCCCC--cEEEeCC-ceEeCCCCeEEEEEEecCCcc--CCCCCCCCCeEEEEEEEc
Q 030258 21 KKQSSCSMQLTNKTDKFVA-FKVKTTNPK--KYCVRPN-TGIILPRTSCAVTVTMQAQKE--APPDFQCKDKFLLLSVVA 94 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~vA-FKVKTT~p~--~Y~VrP~-~GvI~P~~s~~V~Vt~q~~~~--~p~d~~~kDKFlVqs~~v 94 (180)
.....-.+...|++..++- |.+.-..|+ ...+.|. ...|.|+..+.-.+.+.. .. .+.....+=|+.|.+..-
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~-~~~~~~~~~~l~~~~~vsy~~~ 101 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN-SPFSEPTPKPLKPRLRVSYNVG 101 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE-SS-BSTTSSTTEEEEEEEEEET
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE-eecccCCCCCcCeEEEEEEEEC
Confidence 5678889999999887665 665554444 5566676 458999888776666555 21 111222344555555543
No 42
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=55.02 E-value=15 Score=29.41 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.4
Q ss_pred EEEEeCCCCcEEEeCCceE--eCCCCeEEEEEEecC
Q 030258 40 FKVKTTNPKKYCVRPNTGI--ILPRTSCAVTVTMQA 73 (180)
Q Consensus 40 FKVKTT~p~~Y~VrP~~Gv--I~P~~s~~V~Vt~q~ 73 (180)
|+|.--+-+.|++.|.-|+ |.||+++.|.+.-+.
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7788778889999999997 899999999998655
No 43
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=50.65 E-value=28 Score=25.08 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred eEEEEEEEcCCCCeE-EEEEEeCCC-----------------CcEEEeCC--ceEeCCCCeEEEEEEecC
Q 030258 24 SSCSMQLTNKTDKFV-AFKVKTTNP-----------------KKYCVRPN--TGIILPRTSCAVTVTMQA 73 (180)
Q Consensus 24 ~~~~l~L~N~s~~~v-AFKVKTT~p-----------------~~Y~VrP~--~GvI~P~~s~~V~Vt~q~ 73 (180)
-...|+|+|.++..| .++|.=+-| ..|.|+|. .+.|.||+++.+-+....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 345788888887665 244333222 56888876 479999998877665543
No 44
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.53 E-value=94 Score=25.17 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEEeCC----CCcEEEeC-----CceEeCCCCeEEEEEEecCC
Q 030258 20 LKKQSSCSMQLTNKTDKFVAFKVKTTN----PKKYCVRP-----NTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 20 ~~k~~~~~l~L~N~s~~~vAFKVKTT~----p~~Y~VrP-----~~GvI~P~~s~~V~Vt~q~~ 74 (180)
.++.....++|.|.++. -||.|+-+. ++.|.+-- ....|.||+++.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 36778999999999877 799999887 24444321 24677788888777777764
No 45
>smart00637 CBD_II CBD_II domain.
Probab=49.14 E-value=88 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.3
Q ss_pred CcEEEeCC--ceEeCCCCeEEEEEEe
Q 030258 48 KKYCVRPN--TGIILPRTSCAVTVTM 71 (180)
Q Consensus 48 ~~Y~VrP~--~GvI~P~~s~~V~Vt~ 71 (180)
..|.++|. .+.|.||+++.+-+..
T Consensus 50 ~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 50 GHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred CEEEEecCccccccCCCCEEEEEEEe
Confidence 36889864 4799999988776655
No 46
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.88 E-value=1e+02 Score=21.56 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=13.4
Q ss_pred eEEEEEEEcCCCCeEEEEEEe
Q 030258 24 SSCSMQLTNKTDKFVAFKVKT 44 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKT 44 (180)
+.-.|+|+|.+++.|-+...|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 345788888888887777643
No 47
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=43.07 E-value=59 Score=24.49 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred ccCCCceEEEEEEEcCCCCeEEEEEE
Q 030258 18 FELKKQSSCSMQLTNKTDKFVAFKVK 43 (180)
Q Consensus 18 ~~~~k~~~~~l~L~N~s~~~vAFKVK 43 (180)
...+....-.|+|+|.+++.+-|+|.
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 45667788899999999999999986
No 48
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.79 E-value=67 Score=26.90 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCeEEEE--EEeCCCCcEEEeCCceEeCCCCeEEEEEE
Q 030258 26 CSMQLTNKTDKFVAFK--VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (180)
Q Consensus 26 ~~l~L~N~s~~~vAFK--VKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt 70 (180)
..|++.|+|..++.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 4333 333333 78899999999886654
No 49
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.79 E-value=1.4e+02 Score=21.12 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=32.6
Q ss_pred EEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEec
Q 030258 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 8 ~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q 72 (180)
.++|.+|..+. + ....|.++|.....-.|-+.. +.+ ...|.||++..+.++..
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~-----~~~---~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPD-----LGI---SKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGG-----GTE---EEEE-TT-EEEEEEEE-
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECC-----Cce---EEEECCCCEEEEEEcCC
Confidence 56777777754 2 234699999998888887765 111 26789999999888543
No 50
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.29 E-value=1.1e+02 Score=20.77 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=34.0
Q ss_pred CCceEEEEEEEcCCCC-eEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 21 KKQSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~-~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
++...-.++|+|.+.. .=.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4567889999999774 35566664333333333333678899999888888774
No 51
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=37.66 E-value=80 Score=26.79 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=29.3
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|+|+|+|..++.|. ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 599999999999886 3322222 12323458999999998875
No 52
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=35.37 E-value=1.4e+02 Score=20.19 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=37.9
Q ss_pred CCeeEEeccCCCceEEEEEEEcCCC--CeEEEEEEe---CCCCcEEEeCCceEeCCCCeEEEEEE
Q 030258 11 PSELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKT---TNPKKYCVRPNTGIILPRTSCAVTVT 70 (180)
Q Consensus 11 P~eL~F~~~~~k~~~~~l~L~N~s~--~~vAFKVKT---T~p~~Y~VrP~~GvI~P~~s~~V~Vt 70 (180)
|..|.+...........|.|.|-.. -.....|.+ +..+.|.+.++.+ |.++....|.|.
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 3467776654455788999999776 122233332 2247888888776 666667777777
No 53
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=33.98 E-value=1.5e+02 Score=22.33 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=31.2
Q ss_pred CCceEEEEEEEcCCCCeEEE---EEE------------eCCCCcEEEeC--CceEeCCCCeEEEEEEecC
Q 030258 21 KKQSSCSMQLTNKTDKFVAF---KVK------------TTNPKKYCVRP--NTGIILPRTSCAVTVTMQA 73 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~vAF---KVK------------TT~p~~Y~VrP--~~GvI~P~~s~~V~Vt~q~ 73 (180)
.....-..+|.|.++.+++| ++. +-.|..|.... ...-|.||+++.+.+.+..
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 34444555666666655443 111 12355555543 3445999999999998874
No 54
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=33.29 E-value=79 Score=25.48 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=45.3
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEEcCCCC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGA 98 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~~~~ 98 (180)
..-..-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.-.-.. +..--.+..||.+.-..+.
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~------eLN~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE------ELNDLERVAVQLIAYKKDK 85 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG------GGGG-SSEEEEEEEE-SSS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH------HhhccceeEEEEEEEcCCC
Confidence 456788999999999999998888899988 7899999988776543222 1123456666666665543
No 55
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=32.66 E-value=1.3e+02 Score=19.03 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=39.4
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEe-CCce---EeCCCCeEEEEEEe
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVR-PNTG---IILPRTSCAVTVTM 71 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~Vr-P~~G---vI~P~~s~~V~Vt~ 71 (180)
|-|-|+.|.+.........+.+.-.--.....-+.|++.......+. ++.. .+.+|+.+.|.+..
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 56788887775222235556555555556777788888776664443 4444 68888888877754
No 56
>PF13205 Big_5: Bacterial Ig-like domain
Probab=31.45 E-value=1.8e+02 Score=20.11 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=36.0
Q ss_pred eeEEeccCC-CceEEEEEEEc--CCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEec
Q 030258 13 ELKFPFELK-KQSSCSMQLTN--KTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 13 eL~F~~~~~-k~~~~~l~L~N--~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q 72 (180)
.|.|..+.. ......+.+.+ .....|.+. ....+.+.++|... |.+|.++.|.|.-.
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~~~-L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPSQP-LKPGTTYTVTIDSG 85 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEECCc-CCCCCEEEEEECCC
Confidence 466766543 23445556643 334455555 34458899999954 88899999988443
No 57
>COG1470 Predicted membrane protein [Function unknown]
Probab=31.09 E-value=4.7e+02 Score=24.83 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=51.8
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCC---eEEEEEEeCCCCcEEEeCC-ceEeCCCCeEEEEEEecCCccCCCCC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK---FVAFKVKTTNPKKYCVRPN-TGIILPRTSCAVTVTMQAQKEAPPDF 81 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~---~vAFKVKTT~p~~Y~VrP~-~GvI~P~~s~~V~Vt~q~~~~~p~d~ 81 (180)
+|.++=.-+.-....+....-.+.|.|..+- .|--+|+.-.-.--.|.|+ .--|+||++..|.+|... |++.
T Consensus 381 ~v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~~a 456 (513)
T COG1470 381 LVKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PEDA 456 (513)
T ss_pred eEEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CCCC
Confidence 3444433233333445667788999998873 4445554333333445566 456889999999998887 4444
Q ss_pred CCCCeEEEEEEEcC
Q 030258 82 QCKDKFLLLSVVAP 95 (180)
Q Consensus 82 ~~kDKFlVqs~~v~ 95 (180)
...|++.--.+..+
T Consensus 457 ~aGdY~i~i~~ksD 470 (513)
T COG1470 457 GAGDYRITITAKSD 470 (513)
T ss_pred CCCcEEEEEEEeec
Confidence 45677665555544
No 58
>smart00605 CW CW domain.
Probab=30.57 E-value=69 Score=22.52 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=14.0
Q ss_pred EEEEEcC-CCCeEEEEEEeCCCC
Q 030258 27 SMQLTNK-TDKFVAFKVKTTNPK 48 (180)
Q Consensus 27 ~l~L~N~-s~~~vAFKVKTT~p~ 48 (180)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 4444444 458899999865543
No 59
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=28.56 E-value=1.4e+02 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=29.0
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|+|.|+|..+|.|- ++.. .+. +. +.|+|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~-~~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLN-SHE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEEC-Ccc--cC-CCceECCCCccEEEc
Confidence 499999999999875 5543 222 22 358999999998875
No 60
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=28.49 E-value=1.8e+02 Score=24.44 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCeEEEE-EEeC-CCCcEEEeCCceEeCCCCeEEEEEE
Q 030258 26 CSMQLTNKTDKFVAFK-VKTT-NPKKYCVRPNTGIILPRTSCAVTVT 70 (180)
Q Consensus 26 ~~l~L~N~s~~~vAFK-VKTT-~p~~Y~VrP~~GvI~P~~s~~V~Vt 70 (180)
..|++.|+|..++.|. |+-. +.+.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4599999999999875 4322 2223333 3479999999888753
No 61
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=28.48 E-value=1.4e+02 Score=25.21 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=28.1
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|++.|+|..+|.|. ++- +.+. + ...++|.|.++..+.+
T Consensus 163 ~l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEec
Confidence 399999999999886 333 2222 2 2457899999988876
No 62
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=27.82 E-value=1.5e+02 Score=24.92 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|+|.|+|..+|.|---.-.... + ...+|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999988875
No 63
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=27.61 E-value=2.2e+02 Score=20.06 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=33.3
Q ss_pred CcEEEeCCeeEEeccCCCceEEEEEEEcCCC--CeEEEEEEeCCCCcEEEeC----CceEeCCCCeEEEEEEe
Q 030258 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKTTNPKKYCVRP----NTGIILPRTSCAVTVTM 71 (180)
Q Consensus 5 ~lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~--~~vAFKVKTT~p~~Y~VrP----~~GvI~P~~s~~V~Vt~ 71 (180)
.-+..+|.+|.+.. +. .++++|... +.+.|.=.......-...+ ..+.+.||++..+.++-
T Consensus 10 g~~~F~P~~i~v~~--G~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAA--GD----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECC--CC----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 34688899888854 22 367778643 5555532111111000111 23567899998886653
No 64
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=27.52 E-value=93 Score=28.04 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=40.3
Q ss_pred CCCCCc-EEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCC-----cE----EEeC------Cce-EeCCC
Q 030258 1 MSTGDL-VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPK-----KY----CVRP------NTG-IILPR 62 (180)
Q Consensus 1 m~~~~l-L~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~-----~Y----~VrP------~~G-vI~P~ 62 (180)
||++.| |.+.=. ||.|.++ .++.+++++|.|++.| =|||..-.. .| ..+| .-| -|.||
T Consensus 190 mS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pg 265 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPG 265 (402)
T ss_pred cCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccccceeeeeecccCCccCCC
Confidence 566443 444444 6877765 4899999999988654 355543211 11 1111 222 46778
Q ss_pred CeEEEEEEecC
Q 030258 63 TSCAVTVTMQA 73 (180)
Q Consensus 63 ~s~~V~Vt~q~ 73 (180)
++..=..++-|
T Consensus 266 stl~Kvf~l~P 276 (402)
T KOG3865|consen 266 STLSKVFTLTP 276 (402)
T ss_pred CeeeeeEEech
Confidence 87777776655
No 65
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=27.30 E-value=2.7e+02 Score=21.87 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=36.9
Q ss_pred eEEecc---C-CCceEEEEEEEcCCCCeEE-EEEEeCC---CCcEEEeCCceEeCCCCeEEEEEEe
Q 030258 14 LKFPFE---L-KKQSSCSMQLTNKTDKFVA-FKVKTTN---PKKYCVRPNTGIILPRTSCAVTVTM 71 (180)
Q Consensus 14 L~F~~~---~-~k~~~~~l~L~N~s~~~vA-FKVKTT~---p~~Y~VrP~~GvI~P~~s~~V~Vt~ 71 (180)
..|.+. . .+-+.-.|+++|.++..+. -+|.... ..+-.--+..+.|+||+++.+.+-.
T Consensus 73 Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 73 YRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred EEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 456552 2 2446678999999996543 2333322 2244445889999999998877643
No 66
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=27.07 E-value=81 Score=20.58 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=12.4
Q ss_pred eEEEEEEEcCCCCeEEEEE
Q 030258 24 SSCSMQLTNKTDKFVAFKV 42 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKV 42 (180)
+...-++...+.+.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 4444445556668999996
No 67
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=22.76 E-value=2.2e+02 Score=22.66 Aligned_cols=43 Identities=23% Similarity=0.608 Sum_probs=28.0
Q ss_pred eEEecc-CCCceEEEEEEEc---CCCCeEEEEEEeC------CCCcEEEeCCc
Q 030258 14 LKFPFE-LKKQSSCSMQLTN---KTDKFVAFKVKTT------NPKKYCVRPNT 56 (180)
Q Consensus 14 L~F~~~-~~k~~~~~l~L~N---~s~~~vAFKVKTT------~p~~Y~VrP~~ 56 (180)
|.|... ..+-..|.|+|.- .....|+|++|-+ .+.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 555442 2355789999876 2235699999832 34568888874
No 68
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=22.70 E-value=1e+02 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=20.5
Q ss_pred CeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEec
Q 030258 36 KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 36 ~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q 72 (180)
++|+||+ |.+.-|.||+++++.+..-
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEEE
Confidence 5666666 7788899999999988753
No 69
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=22.47 E-value=2.1e+02 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|++.|+|..+|.|- ++. +.+. + ...++|.|.++..+.+
T Consensus 170 ~l~v~NpTPYyvtl~~l~~-~~~~--~-~~~~miaPfs~~~~~~ 209 (237)
T PRK15224 170 KLKVENPTPFYMNLASVTV-GGKP--I-TGLEYIPPFADKTLNM 209 (237)
T ss_pred EEEEECCCCcEEEeEeEEE-CCcc--c-CCceeECCCCccEEEc
Confidence 499999999999875 443 2232 2 2247899999888764
No 70
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=21.49 E-value=59 Score=23.36 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=13.9
Q ss_pred EEEEEeCCCC--cEEEeCCceEe
Q 030258 39 AFKVKTTNPK--KYCVRPNTGII 59 (180)
Q Consensus 39 AFKVKTT~p~--~Y~VrP~~GvI 59 (180)
+||.|+.+.+ ||++.|+.|+-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~ 24 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLE 24 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHH
Confidence 6899977655 46666666643
No 71
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.84 E-value=2.1e+02 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=27.8
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|++.|+|..++.|- ++-... . + ...|.|.|+++..+.+
T Consensus 161 ~l~v~Nptpy~vtl~~l~~~~~-~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSVGSQ-K--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred EEEEECCCccEEEEEeEEECCc-c--c-CCCceECCCCccEEEc
Confidence 599999999998874 333222 2 2 2358999999988875
No 72
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=20.43 E-value=2.4e+02 Score=23.83 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=28.0
Q ss_pred EEEEEcCCCCeEEE-EEEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAF-KVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAF-KVKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|++.|+|..++.| .++- +.+ .+ ..++|.|+++..+.+
T Consensus 177 ~l~v~NptPyyvtl~~l~v-~g~--~~--~~~mI~P~s~~~~~~ 215 (243)
T PRK15290 177 NLIAENPNPIHISVMDVIV-DGH--DV--PLNMIRPFETLTLPL 215 (243)
T ss_pred EEEEECCCcEEEEEEEEee-cCc--cc--CCceECCCCceEEEc
Confidence 59999999999988 5553 222 22 247899999998875
No 73
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.40 E-value=2.1e+02 Score=23.80 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.7
Q ss_pred EEEEEcCCCCeEEEE-E-EeC-CCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFK-V-KTT-NPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFK-V-KTT-~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|+|.|+|..++-|. + +.. +.+.+.+ ..|.|.|+++..+.+
T Consensus 156 ~l~v~N~~p~~i~l~~l~~~~~~g~~~~~--~~~~v~P~s~~~~~l 199 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVILLPSGKVVAL--PKPYILPGESLTVAI 199 (230)
T ss_pred EEEEECCCCEEEEEeccEEEccCCceecc--CCceECCCceEEEEc
Confidence 599999999998765 2 221 2333333 348999999998875
No 74
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=20.34 E-value=2.3e+02 Score=23.93 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=33.0
Q ss_pred eeEEeccCCCceEEEEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 13 ELKFPFELKKQSSCSMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 13 eL~F~~~~~k~~~~~l~L~N~s~~~vAFK-VKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|.|.... ..|++.|+|..++.|. ++- +.+ .+....++|.|.++..+.+
T Consensus 166 ~L~~~~~g-----~~l~v~NpTPyyvtl~~l~~-~~~--~~~~~~~mi~Pfs~~~~~~ 215 (242)
T PRK15253 166 RIGLFRSN-----KTVIMKNDTANWITVTDVKA-GNT--KINDQTIMLPPLSTQNINM 215 (242)
T ss_pred ceEEEEcC-----CEEEEECCCCcEEEeEeeEE-CCc--ccCCCCceECCCCccEEec
Confidence 46676421 2499999999999986 333 222 2333456899999988764
No 75
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=1.4e+02 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=19.7
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCc
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKK 49 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~ 49 (180)
..-+|++.+-...-+-||||.++|-+
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~Lk 44 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLK 44 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHH
Confidence 44578888866678899999888743
Done!