Query 030258
Match_columns 180
No_of_seqs 211 out of 729
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 4.7E-40 1.6E-44 258.3 12.6 134 3-141 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 2.1E-36 7E-41 236.0 17.6 122 4-129 12-135 (147)
3 1z9l_A Vesicle-associated memb 100.0 4.7E-36 1.6E-40 228.5 16.0 119 4-126 8-127 (128)
4 1msp_A MSP, major sperm protei 100.0 3.9E-34 1.3E-38 218.1 16.6 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 2E-29 6.9E-34 188.1 13.8 104 7-124 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 6.5E-29 2.2E-33 187.2 15.5 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.5 7E-07 2.4E-11 66.2 8.5 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 4.8E-06 1.7E-10 60.0 7.9 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.2 1.9E-05 6.7E-10 60.2 10.7 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.0003 1E-08 61.3 10.5 72 4-75 27-105 (366)
11 2qsv_A Uncharacterized protein 96.9 0.0057 2E-07 49.2 9.1 69 6-75 2-71 (220)
12 2qsv_A Uncharacterized protein 96.4 0.014 4.8E-07 46.9 8.8 66 6-74 119-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 94.1 1 3.4E-05 37.3 12.5 110 7-130 30-149 (257)
14 2co7_B SAFB chaperone, putativ 92.2 1.5 5.1E-05 35.3 10.5 116 7-130 14-135 (221)
15 2r39_A FIXG-related protein; s 90.0 1.6 5.4E-05 31.4 7.9 51 24-74 33-84 (118)
16 2xg5_A PAPD, chaperone protein 89.7 6.6 0.00023 31.4 15.5 110 7-130 2-120 (218)
17 4djm_A DRAB; chaperone, PILI; 89.0 3.5 0.00012 33.6 10.1 84 7-96 24-112 (239)
18 1l4i_A SFAE protein; periplasm 88.8 7.5 0.00026 30.7 14.3 112 7-130 2-120 (206)
19 1klf_A FIMC chaperone, chapero 88.0 8.5 0.00029 30.4 15.0 112 7-130 2-120 (205)
20 1yew_A Particulate methane mon 87.1 3.9 0.00013 35.7 9.5 67 6-74 249-337 (382)
21 4ay0_A Chaperone protein CAF1M 86.4 11 0.00038 30.1 13.4 109 7-129 14-129 (218)
22 3gfu_C Chaperone protein FAEE; 84.4 15 0.0005 29.7 13.1 107 7-129 2-115 (224)
23 3rfr_A PMOB; membrane, oxidore 79.5 6.6 0.00023 34.7 7.9 65 6-73 283-368 (419)
24 2huh_A Putative DNA mismatch r 58.1 29 0.001 26.3 6.4 67 24-97 28-94 (147)
25 2xzz_A Protein-glutamine gamma 51.7 58 0.002 22.7 7.7 54 21-75 19-75 (102)
26 3idu_A Uncharacterized protein 50.8 53 0.0018 23.9 6.7 68 21-97 32-100 (127)
27 3isy_A Bsupi, intracellular pr 44.2 54 0.0018 23.8 5.8 38 1-44 2-40 (120)
28 3e38_A Two-domain protein cont 41.2 85 0.0029 26.6 7.4 65 26-97 270-334 (343)
29 3hn9_A Lamin-B1; structural ge 38.8 48 0.0016 24.0 4.8 41 26-67 25-71 (123)
30 3vta_A Cucumisin; subtilisin-l 38.3 1.3E+02 0.0045 27.2 8.7 50 24-73 539-591 (621)
31 3zy7_A AP-1 complex subunit ga 35.4 77 0.0026 22.7 5.4 69 23-95 30-104 (122)
32 1klf_A FIMC chaperone, chapero 33.3 86 0.0029 24.4 5.8 39 27-69 139-177 (205)
33 1iu1_A Gamma1-adaptin; coated 31.2 1.4E+02 0.0046 22.1 6.4 68 24-95 55-128 (146)
34 1wm3_A Ubiquitin-like protein 29.6 50 0.0017 21.1 3.3 21 27-47 3-23 (72)
35 1ifr_A Lamin A/C; immunoglobul 27.2 1.3E+02 0.0045 21.6 5.5 42 26-67 19-66 (121)
36 3jt0_A Lamin-B1; structural ge 27.1 1E+02 0.0035 23.0 5.0 42 26-67 38-84 (144)
37 1gyu_A Adapter-related protein 26.4 1.4E+02 0.0047 21.9 5.6 69 23-95 48-122 (140)
38 2io0_B Small ubiquitin-related 26.0 69 0.0024 21.7 3.6 22 26-47 6-27 (91)
39 3i6s_A Subtilisin-like proteas 25.5 2.7E+02 0.0093 25.5 8.6 51 24-74 560-613 (649)
40 3q48_A Chaperone CUPB2; IG fol 25.2 65 0.0022 26.2 3.9 43 25-69 172-216 (257)
41 4ay0_A Chaperone protein CAF1M 25.0 66 0.0023 25.5 3.8 47 14-69 141-187 (218)
42 3ndz_E Endoglucanase D; cellot 24.1 1.5E+02 0.0051 20.8 5.2 49 24-72 17-86 (107)
43 2e9g_A AP-1 complex subunit ga 23.0 68 0.0023 23.3 3.3 69 23-95 39-113 (131)
44 2io1_B Small ubiquitin-related 21.5 95 0.0033 21.1 3.6 23 25-47 7-29 (94)
45 4gio_A Putative lipoprotein; u 21.4 1.7E+02 0.0057 20.6 5.0 34 21-54 35-68 (107)
46 2lll_A Lamin-B2; immunoglobuli 20.8 1.6E+02 0.0056 21.7 5.0 42 26-67 34-81 (139)
47 2d07_B Ubiquitin-like protein 20.5 1E+02 0.0035 20.8 3.6 24 24-47 16-39 (93)
48 1xo8_A AT1G01470; structural g 20.4 2.1E+02 0.0071 21.0 5.6 49 24-72 41-95 (151)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=4.7e-40 Score=258.33 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=123.6
Q ss_pred CCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCC
Q 030258 3 TGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (180)
Q Consensus 3 ~~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~ 81 (180)
.+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999999 8999999999999999999999999999999999999999999999999999999999999854 2
Q ss_pred CCCCeEEEEEEEcC--CCCCccccccccccccCCCeeEEEEeEEEEe-cCCCCCCCCCCCCCC
Q 030258 82 QCKDKFLLLSVVAP--DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEEG 141 (180)
Q Consensus 82 ~~kDKFlVqs~~v~--~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~-p~~~~s~v~~~~e~~ 141 (180)
+|+|||+||++.++ ++.+..|+. ++|++..+..++++||||+|+ +++|+|++++|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 68999999999999 565666776 899998888999999999999 889999999998876
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-36 Score=236.02 Aligned_cols=122 Identities=33% Similarity=0.611 Sum_probs=111.0
Q ss_pred CCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCC
Q 030258 4 GDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQ 82 (180)
Q Consensus 4 ~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~ 82 (180)
..+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.|+||++.. +++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~-~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDY-DPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCC-CTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcC-Ccccc
Confidence 468999997 8999999999999999999999999999999999999999999999999999999999999854 44578
Q ss_pred CCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEe-cCC
Q 030258 83 CKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PAN 129 (180)
Q Consensus 83 ~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~-p~~ 129 (180)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+ |++
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~ 135 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNE 135 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCC
Confidence 99999999999998653 56 4899988888999999999998 443
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=4.7e-36 Score=228.55 Aligned_cols=119 Identities=32% Similarity=0.602 Sum_probs=109.3
Q ss_pred CCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCC
Q 030258 4 GDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQ 82 (180)
Q Consensus 4 ~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~ 82 (180)
+.+|.|+|. +|.|.+++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.|+||+++.. ++++
T Consensus 8 ~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~-p~~~ 86 (128)
T 1z9l_A 8 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYD-PNEK 86 (128)
T ss_dssp CCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCC-TTCC
T ss_pred CCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCC-cccc
Confidence 478999997 89999999999999999999999999999999999999999999999999999999999998643 4568
Q ss_pred CCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEe
Q 030258 83 CKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (180)
Q Consensus 83 ~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~ 126 (180)
|+|||+||++.++++.+ |+ .++|++..++.++++||||+|.
T Consensus 87 ~~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 87 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cCCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 99999999999998653 66 4899998888999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=3.9e-34 Score=218.12 Aligned_cols=118 Identities=24% Similarity=0.423 Sum_probs=107.4
Q ss_pred CcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCC
Q 030258 5 DLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQC 83 (180)
Q Consensus 5 ~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~ 83 (180)
..|.|+|. +|.|+++++++++|.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++++.|++. .
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~~-~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDL-N 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSCC-S
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCcc-C
Confidence 57999998 899999999999999999999999999999999999999999999999999999999999998777664 4
Q ss_pred CCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEe
Q 030258 84 KDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYI 126 (180)
Q Consensus 84 kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~ 126 (180)
+|||+|||+.++++.+ +|+..+||.+. ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 9999999999998864 68887777553 3589999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2e-29 Score=188.07 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=90.3
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCe
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDK 86 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDK 86 (180)
|.|+|.+|.|.++. .+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999874 479999999999999999999999999999999999999999999999995 2 37999
Q ss_pred EEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEE
Q 030258 87 FLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124 (180)
Q Consensus 87 FlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~ 124 (180)
|+||++.++++. .|. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 355 589998654 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=6.5e-29 Score=187.20 Aligned_cols=106 Identities=23% Similarity=0.401 Sum_probs=93.5
Q ss_pred CcEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCC
Q 030258 5 DLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (180)
Q Consensus 5 ~lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~k 84 (180)
.++.++|.+|.|+++. .+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 5789999999998763 599999999999999999999999999999999999999999999999996 2 379
Q ss_pred CeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEE
Q 030258 85 DKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV 124 (180)
Q Consensus 85 DKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~ 124 (180)
|||+||++.++++.. |. +++|++..+ .++.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987543 55 589998655 578888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=7e-07 Score=66.15 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=61.2
Q ss_pred CCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEE
Q 030258 11 PSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLL 89 (180)
Q Consensus 11 P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlV 89 (180)
|..|.|.. +.+......|.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|.... .....+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEEEEEE
Confidence 66788865 567778999999999999999999974 479999999999999999999999996421 24555555
Q ss_pred EE
Q 030258 90 LS 91 (180)
Q Consensus 90 qs 91 (180)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=4.8e-06 Score=59.97 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCcEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCCC---CcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 4 GDLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNP---KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 4 ~~lL~I~P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT~p---~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
+..+.+++..|.|-. ..+....+.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 466889998899954 56777899999999999999999964221 469999999999999999999999985
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.16 E-value=1.9e-05 Score=60.19 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCcEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeC------CCCcEEEeCCceEeCCCCeEEEEEEecC
Q 030258 4 GDLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTT------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (180)
Q Consensus 4 ~~lL~I~P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT------~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~ 73 (180)
..-+.|++.+|.|-. .+....++.|+|+|++.-+..|++.-. .+..+.|.|..|.|.||+++.|.|++..
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 456889999999964 667788999999999999999999753 3456999999999999999999999884
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.65 E-value=0.0003 Score=61.27 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=60.4
Q ss_pred CCcEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCC------CCcEEEeCCceEeCCCCeEEEEEEecCCc
Q 030258 4 GDLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTN------PKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 4 ~~lL~I~P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT~------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
...+.|++.+|.|-. .+....+..|+|+|++.-++.|++.... +..+.|.|..|.|.||+++.|.|++....
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCT
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECH
Confidence 456889999999954 6778899999999999999999997542 23477999999999999999999987543
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.85 E-value=0.0057 Score=49.22 Aligned_cols=69 Identities=10% Similarity=0.202 Sum_probs=59.2
Q ss_pred cEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCc
Q 030258 6 LVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 6 lL~I~P~eL~F~~-~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
-|++++.+|.|.- ..+......+.++|.++.++-++.-.. |..+.+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 4899999999965 445667789999999999999997544 88888899999999999999999998754
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.45 E-value=0.014 Score=46.90 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=56.5
Q ss_pred cEEEeCCeeEEe-ccCCCceEEEEEEEcCCCCeEEE-EEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCC
Q 030258 6 LVNIQPSELKFP-FELKKQSSCSMQLTNKTDKFVAF-KVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 6 lL~I~P~eL~F~-~~~~k~~~~~l~L~N~s~~~vAF-KVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
.+.++ ..+.|- .+ +....+.++|+|.++.++.+ +|+++. +...+.++.+.|.||++..|.|++.+.
T Consensus 119 ~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 119 VMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred EEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 46777 778884 35 67788999999999999988 787764 789999999999999999999999874
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=94.11 E-value=1 Score=37.27 Aligned_cols=110 Identities=14% Similarity=0.226 Sum_probs=71.0
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEecCCcc
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p----------~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~ 76 (180)
|.|.|..+.|+... ....|+|+|.++.++.-.+...+. .-|.|-|..-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPASE---REVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETTC---SEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCCC---cEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 56677788887642 468999999999887766654321 239999999999999999999987754 3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 77 ~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
.|.|- ---|-+..-.+|+... + ....=......+|++-|.|..-
T Consensus 106 LP~Dr--ESlf~lnv~eIPp~~~--~------~~n~Lqiair~rIKLFyRP~~L 149 (257)
T 3q48_A 106 LPTDR--ESLFWLNILEVPPRDE--D------ENNALQFSFRSRFKLFFRPSQL 149 (257)
T ss_dssp CCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECTTC
T ss_pred CCCCc--eeEEEEEeeecCCCCC--C------CCceEEEEEEEEEEEEEecccC
Confidence 45552 2345555555554211 1 0111124467889998987643
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.18 E-value=1.5 Score=35.29 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=71.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-----CCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~-----p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~ 81 (180)
|.|.+..+.|+... ....|+|.|.++.++.-.+...+ ..-|.|-|..-.|+||+...|.|..... ..|.|-
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 67788889997643 46799999999987766665432 1259999999999999999999988763 356552
Q ss_pred CCCCeEEEEEEEcCCCCCcccccccccccc-CCCeeEEEEeEEEEecCCC
Q 030258 82 QCKDKFLLLSVVAPDGATAKDIGPDMFTKE-DGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 82 ~~kDKFlVqs~~v~~~~~~~di~~~~f~k~-~~~~v~e~KLrV~~~p~~~ 130 (180)
-.-|-+..-.+++....++ ..+ =++. .=......+|++-|.|..-
T Consensus 90 --Eslf~lnv~eIPp~~~~~~-~~~-~n~~~~lqia~r~rIKlFyRP~~l 135 (221)
T 2co7_B 90 --ETLQWVCIKAVPPENEPSD-TQA-KGATLDLNLSINACDKLIFRPDAV 135 (221)
T ss_dssp --CEEEEEEEEEECCC-------------CEEEEEEEEEEEEEEEECTTS
T ss_pred --eEEEEEEeecCCCCccccc-ccc-cCcceeEEEEeeeeeeEEEecccc
Confidence 2344444445554211000 000 0000 0013457778888886643
No 15
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=89.99 E-value=1.6 Score=31.40 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=39.3
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCceEeCCCCeEEEEEEecCC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTGIILPRTSCAVTVTMQAQ 74 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~V-rP~~GvI~P~~s~~V~Vt~q~~ 74 (180)
-...|+|.|++.+...|.++......+.+ .|..=.|.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 45799999999999999998876444554 3554578899988888877654
No 16
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=89.74 E-value=6.6 Score=31.35 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=72.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecCC-ccC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQ-KEA 77 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKTT~-------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~-~~~ 77 (180)
|.|.+..+.|+... ....|+|+|.++. ++.-.+...+ ..-|.|-|+.-.|+||+...|.|..... ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56778889997653 4779999999988 7666665432 2349999999999999999999988762 235
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 78 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
|.|- -.-|-+..-.+++... + +..=......+|++-|.|..-
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~~--~-------~n~lqia~r~rIKlFyRP~~l 120 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRSE--K-------ANVLQIALQTKIKLFYRPAAI 120 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCCC--C-------TTEEEEEEEEEEEEEEECGGG
T ss_pred CCCc--eEEEEEEeecCCCCCC--C-------CceEEEEehheeeEEEcCccc
Confidence 6553 3344444444444210 1 000123457888888887543
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=89.05 E-value=3.5 Score=33.63 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=58.4
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-----CCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF 81 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~-----p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~ 81 (180)
|.|.+..+.|+... ....|+|+|.++.++.-.+...+ ..-|.|.|+.-.|+||+...|.|..... ..|.|-
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 56888889997643 46799999999887655544321 2249999999999999999999987653 345552
Q ss_pred CCCCeEEEEEEEcCC
Q 030258 82 QCKDKFLLLSVVAPD 96 (180)
Q Consensus 82 ~~kDKFlVqs~~v~~ 96 (180)
-.-|-+....+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 2334444444443
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=88.81 E-value=7.5 Score=30.72 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=71.0
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCC-CeEEEEEEeCC-----CCcEEEeCCceEeCCCCeEEEEEE-ecCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVT-MQAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~-~~vAFKVKTT~-----p~~Y~VrP~~GvI~P~~s~~V~Vt-~q~~~~~p~ 79 (180)
|.|.+..+.|+... ....|+|+|.++ .++.-.+...+ ..-|.|-|..-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56777889997643 477999999986 77666654422 234999999999999999999998 654 23566
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
|-..--.|.|..+...+... ++ +..=......+|++-|.|..-
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~-------~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG-------ENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECTTC
T ss_pred CceEEEEEEeecCCCCcccc-cC-------CceEEEEhhheeeEEEecccc
Confidence 53333334444444221100 00 001134568889998887654
No 19
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=88.04 E-value=8.5 Score=30.42 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeCC-----CCcEEEeCCceEeCCCCeEEEEEEe-cCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTN-----PKKYCVRPNTGIILPRTSCAVTVTM-QAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKTT~-----p~~Y~VrP~~GvI~P~~s~~V~Vt~-q~~~~~p~ 79 (180)
|.|++..+.|+... ....|+|+|.++. ++.-.+...+ ..-|.|-|..-.|+||+...|.|.. ... ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56778889997653 4779999999987 7666654322 2359999999999999999999988 652 3565
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~~ 130 (180)
|- -.-|-+....+++.....+ . +..=......+|++-|.|..-
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-~-----~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL-T-----ENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST-T-----SCEEEEEEEEEEEEEEECTTC
T ss_pred Cc--eEEEEEEeEecCCCCcccc-C-----CceEEEEeeeeeeEEEccccc
Confidence 52 2345555555554211000 0 000123457788888887654
No 20
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=87.05 E-value=3.9 Score=35.74 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=49.1
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcE----------------------EEeCCceEeCCCC
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY----------------------CVRPNTGIILPRT 63 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y----------------------~VrP~~GvI~P~~ 63 (180)
.+.++-.+-.|.-+ ++...-+|+++|.++++|-..==+|+.-+| .|.|+. -|.||+
T Consensus 249 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~-pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNS-PLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCS-CBCTTC
T ss_pred ceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCC-CcCCCc
Confidence 34444445556544 678899999999999999888666666665 334443 389999
Q ss_pred eEEEEEEecCC
Q 030258 64 SCAVTVTMQAQ 74 (180)
Q Consensus 64 s~~V~Vt~q~~ 74 (180)
+.+|.|+.|.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999999863
No 21
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=86.39 E-value=11 Score=30.08 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=66.9
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~-------p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
|.|.-..+.|+.. .....|+|+|.++.+..-.....+ ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566667888653 246789999999988666654321 1239999999999999999999988764 3455
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
|- -.-|-+....+++... +- .+. =......+|++-|.|..
T Consensus 90 DR--ESlf~lnv~eIPp~~~--~~----~n~--lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 90 DK--ESLKWLCVKGIPPKDE--DI----WVD--VQFAINNCIKLLVRPNE 129 (218)
T ss_dssp SS--CEEEEEEEEEECC----------------------CEEEEEEECTT
T ss_pred Cc--EEEEEEEEEecCCCCc--cc----cce--eEEEEEEEEEEEEcCcc
Confidence 52 2335555555554211 10 010 12335677888888754
No 22
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=84.42 E-value=15 Score=29.67 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=66.8
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeC--C----CCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030258 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--N----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (180)
Q Consensus 7 L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~-~vAFKVKTT--~----p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~ 79 (180)
+.|+...+.|+.. .....|+|+|.++. ++.-.+... . ..-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 3455667888764 34679999999875 443333221 1 1249999999999999999999987653 3455
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 030258 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (180)
Q Consensus 80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~p~~ 129 (180)
|- -.-|-+....+++... ...=......+|++-|.|..
T Consensus 78 DR--ESlf~lnv~eIPp~~~----------~n~Lqiair~rIKLFyRP~~ 115 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPALE----------GSGIAVALRTKLKLFYRPKA 115 (224)
T ss_dssp SS--CEEEEEEEEEECCCCS----------SSBCCEEEEEEEEEEEECGG
T ss_pred Cc--eEEEEEEeecCCCCCC----------CCeEEEEEEEEeeEEEcccc
Confidence 52 2334444444444210 01123456788888888653
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=79.47 E-value=6.6 Score=34.67 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=48.4
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEE--------------------E-eCCceEeCCCCe
Q 030258 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYC--------------------V-RPNTGIILPRTS 64 (180)
Q Consensus 6 lL~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~--------------------V-rP~~GvI~P~~s 64 (180)
.+.++-.+-+|.-+ ++...-+|+++|.++++|-..==+|+.-+|. + .|+ -|.||+|
T Consensus 283 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 34445455566544 5788899999999999998886666666654 1 233 5999999
Q ss_pred EEEEEEecC
Q 030258 65 CAVTVTMQA 73 (180)
Q Consensus 65 ~~V~Vt~q~ 73 (180)
.+|.|++|.
T Consensus 360 rt~~V~a~d 368 (419)
T 3rfr_A 360 KEIVVKIQD 368 (419)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEeeh
Confidence 999999986
No 24
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=58.06 E-value=29 Score=26.34 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=50.8
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEEcCCC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~~~ 97 (180)
..-.+-|.|-|+.++.|-.-+...+.+.++ ..|.|+|+..+.|.=.-.. ++..--++.||-+....+
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKD------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGG------GGGGCSSEEEEEEEECSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChh------HhcCCceEEEEEEEEcCC
Confidence 345788999999999999988777777776 6899999988776533222 223467889998888764
No 25
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=51.75 E-value=58 Score=22.73 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=39.7
Q ss_pred CCceEEEEEEEcCCC---CeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCc
Q 030258 21 KKQSSCSMQLTNKTD---KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~---~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~ 75 (180)
++...+.++++|+=. +...|.|--..-.+=... ..|-|.||+++.+.+.+.|.+
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 577899999999876 567888875443222111 136799999999999999864
No 26
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=50.79 E-value=53 Score=23.90 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.3
Q ss_pred CCceEEEEEEEcCCCC-eEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEEcCCC
Q 030258 21 KKQSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~-~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~~~ 97 (180)
++.+...++++|.+.. -=+|+|+-...+...-.-..+ |.+|++..|.++..+. ....+.|..++-+++
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~--------~~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPT--------QEGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCS--------SCEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcC--------CCcEEEEEEEEcCCC
Confidence 6778999999999974 468998876666654443344 9999999999988652 134566666665554
No 27
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=44.17 E-value=54 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCCCCc-EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe
Q 030258 1 MSTGDL-VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT 44 (180)
Q Consensus 1 m~~~~l-L~I~P~eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKT 44 (180)
|..|.| +.|+|.. .+....-.|+|+|.++..+-+...+
T Consensus 2 ~~~~~l~~~v~~~~------~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 2 MENQEVVLSIDAIQ------EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp --CCSEEEEEEEEE------CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred ccccEEEEEEeecc------CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 344444 4555544 3456788999999999998887744
No 28
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=41.15 E-value=85 Score=26.55 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCCCCCCeEEEEEEEcCCC
Q 030258 26 CSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (180)
Q Consensus 26 ~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~~~ 97 (180)
-.+.|+|.++- -|.++-+.+..|.+....--|+|+++..+.|.+....+ ...=+|-|--+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 58899998885 56677789999999999999999999999998764321 2345666655555443
No 29
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=38.78 E-value=48 Score=24.03 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCeEE---EEEEeCCCC---cEEEeCCceEeCCCCeEEE
Q 030258 26 CSMQLTNKTDKFVA---FKVKTTNPK---KYCVRPNTGIILPRTSCAV 67 (180)
Q Consensus 26 ~~l~L~N~s~~~vA---FKVKTT~p~---~Y~VrP~~GvI~P~~s~~V 67 (180)
..++|.|.+++.+. |+++-...+ .|.. |..=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999987775 777654333 3544 55558999998765
No 30
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=38.27 E-value=1.3e+02 Score=27.18 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCc--EEEeCCceEe-CCCCeEEEEEEecC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKK--YCVRPNTGII-LPRTSCAVTVTMQA 73 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~--Y~VrP~~GvI-~P~~s~~V~Vt~q~ 73 (180)
.+-.-+++|.....-.|+++.+.|.- -.|.|..=.+ ..|++..+.|++..
T Consensus 539 ~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 44456799999999999999888874 5567887655 56888888888764
No 31
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=35.37 E-value=77 Score=22.70 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=40.9
Q ss_pred ceEEEEEEEcCCCCe-EEEEEEeCCCCcEEE--eCCce-EeCC--CCeEEEEEEecCCccCCCCCCCCCeEEEEEEEcC
Q 030258 23 QSSCSMQLTNKTDKF-VAFKVKTTNPKKYCV--RPNTG-IILP--RTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95 (180)
Q Consensus 23 ~~~~~l~L~N~s~~~-vAFKVKTT~p~~Y~V--rP~~G-vI~P--~~s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~ 95 (180)
...-.+..+|.+..+ =-|.+..-.|+-|.+ .|..| .|.| +..++=.+.+..... ...+=|+.|.+..-.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~----~~lklR~klsY~~~g 104 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTFNWNG 104 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTC----CCCCEEEEEEEEETT
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCC----CCEEEEEEEEEEECC
Confidence 356677888988643 346666666776555 47776 6888 655554444433211 135666777666543
No 32
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=33.27 E-value=86 Score=24.44 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.4
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 27 ~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
.|++.|+|..++.|-=-+.+.+.+ . .+.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 699999999999986322333333 2 37999999988764
No 33
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=31.16 E-value=1.4e+02 Score=22.12 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=37.8
Q ss_pred eEEEEEEEcCCCC-eEEEEEEeCCCCcEEEe--CCce-EeCCCC--eEEEEEEecCCccCCCCCCCCCeEEEEEEEcC
Q 030258 24 SSCSMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRT--SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95 (180)
Q Consensus 24 ~~~~l~L~N~s~~-~vAFKVKTT~p~~Y~Vr--P~~G-vI~P~~--s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~ 95 (180)
..-.++.+|.+.. -=-|.+..-.|+-|.++ |..| .|.|+. .++-.+.+..... ...+=|+.|.+..-.
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~g 128 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHKG 128 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEETT
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEECC
Confidence 5556788898763 44555555666665555 6666 477733 3333333332211 135667777776643
No 34
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.63 E-value=50 Score=21.07 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=15.9
Q ss_pred EEEEEcCCCCeEEEEEEeCCC
Q 030258 27 SMQLTNKTDKFVAFKVKTTNP 47 (180)
Q Consensus 27 ~l~L~N~s~~~vAFKVKTT~p 47 (180)
+|++...+.+.+.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 567777777888888887765
No 35
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=27.22 E-value=1.3e+02 Score=21.61 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCeEE---EEEEeC-C--CCcEEEeCCceEeCCCCeEEE
Q 030258 26 CSMQLTNKTDKFVA---FKVKTT-N--PKKYCVRPNTGIILPRTSCAV 67 (180)
Q Consensus 26 ~~l~L~N~s~~~vA---FKVKTT-~--p~~Y~VrP~~GvI~P~~s~~V 67 (180)
..++|.|.+++.+. |+++-. . ...-+--|..=+|.||.+++|
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 37899999887664 566644 2 222333566677999998653
No 36
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=27.10 E-value=1e+02 Score=22.98 Aligned_cols=42 Identities=5% Similarity=0.050 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCeEE---EEEEeCCCCc--EEEeCCceEeCCCCeEEE
Q 030258 26 CSMQLTNKTDKFVA---FKVKTTNPKK--YCVRPNTGIILPRTSCAV 67 (180)
Q Consensus 26 ~~l~L~N~s~~~vA---FKVKTT~p~~--Y~VrP~~GvI~P~~s~~V 67 (180)
..++|.|++++.+. |+|+=...++ ...-|..=+|.||++++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 47899999987774 5665333221 234455558999998765
No 37
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=26.36 E-value=1.4e+02 Score=21.93 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=38.3
Q ss_pred ceEEEEEEEcCCCC-eEEEEEEeCCCCcEEEe--CCce-EeCCCC--eEEEEEEecCCccCCCCCCCCCeEEEEEEEcC
Q 030258 23 QSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVR--PNTG-IILPRT--SCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95 (180)
Q Consensus 23 ~~~~~l~L~N~s~~-~vAFKVKTT~p~~Y~Vr--P~~G-vI~P~~--s~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~ 95 (180)
...-.+..+|.+.. -=-|.+..-.|+-|.++ |..| .|.|+. .++-.+.+..... ...+=|+.|.+..-.
T Consensus 48 ~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~~g 122 (140)
T 1gyu_A 48 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHKG 122 (140)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEETT
T ss_pred EEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEECC
Confidence 35567788898764 44566666667766555 6666 477733 3443333332211 125666777666543
No 38
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=26.02 E-value=69 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCeEEEEEEeCCC
Q 030258 26 CSMQLTNKTDKFVAFKVKTTNP 47 (180)
Q Consensus 26 ~~l~L~N~s~~~vAFKVKTT~p 47 (180)
-.|++...+.+.|.||||.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4678888778889999987765
No 39
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=25.53 E-value=2.7e+02 Score=25.46 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=39.3
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEE--EeCCceEe-CCCCeEEEEEEecCC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYC--VRPNTGII-LPRTSCAVTVTMQAQ 74 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p~~Y~--VrP~~GvI-~P~~s~~V~Vt~q~~ 74 (180)
.+-.-+++|..+..-.|+++...|.-.. |.|..=.. ..+++....|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 5678889999988888999999987655 56998766 489999999988764
No 40
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=25.16 E-value=65 Score=26.19 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=28.1
Q ss_pred EEEEEEEcCCCCeEEEE-EEeCC-CCcEEEeCCceEeCCCCeEEEEE
Q 030258 25 SCSMQLTNKTDKFVAFK-VKTTN-PKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 25 ~~~l~L~N~s~~~vAFK-VKTT~-p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
...|++.|+|..+|.|- |+... ...+.. ..|.|.|+++..+.+
T Consensus 172 ~~~L~v~Nptpyyvtl~~l~~~~~~~~~~~--~~~mV~P~s~~~~~l 216 (257)
T 3q48_A 172 KTVVQVNNPTPYYVSFASVELIVDGRVMSV--GKGMVAPFSTKEFDW 216 (257)
T ss_dssp --CEEEEECSSSCEEEEEEEEEETTEEEEE--EEEEECTTEEEEECC
T ss_pred CcEEEEECCCceEEEEEEEEEccCCeeccc--cceeEcCCceeEEec
Confidence 34699999999999874 33221 222322 358999999988754
No 41
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=24.96 E-value=66 Score=25.46 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=31.4
Q ss_pred eEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 030258 14 LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (180)
Q Consensus 14 L~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~V 69 (180)
|.|.... ..|++.|+|..+|.|-=-+-+.+ .+. .+.|.|+++..+.+
T Consensus 141 L~~~~~g-----~~l~v~NptPyyvtl~~l~~~g~--~i~--~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 141 LSWKVDG-----GKLIAENPSPFYMNIGELTFGGK--SIP--SHYIPPKSTWAFDL 187 (218)
T ss_dssp CEEEEET-----TEEEEEECSSSCEEEEEEEETTE--ECC--CCEECTTEEEEEEC
T ss_pred eEEEEeC-----CEEEEECCCCCEEEEEEEEECCE--Ecc--CcEECCCCeeEEEC
Confidence 6665432 25999999999999852222222 332 47999999887764
No 42
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=24.14 E-value=1.5e+02 Score=20.77 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=31.7
Q ss_pred eEEEEEEEcCCCCeEE-EEEEe-----------------CCCCcEEEeCC--ceEeCC-CCeEEEEEEec
Q 030258 24 SSCSMQLTNKTDKFVA-FKVKT-----------------TNPKKYCVRPN--TGIILP-RTSCAVTVTMQ 72 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vA-FKVKT-----------------T~p~~Y~VrP~--~GvI~P-~~s~~V~Vt~q 72 (180)
-...++|+|.+...|. ++|.= .+-..|.|++. .|-|.| |+++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4567888887765443 33221 22467899864 589999 98877665543
No 43
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.00 E-value=68 Score=23.25 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=36.2
Q ss_pred ceEEEEEEEcCCCC-eEEEEEEeCCCCc--EEEeCCce-EeCCCCe--EEEEEEecCCccCCCCCCCCCeEEEEEEEcC
Q 030258 23 QSSCSMQLTNKTDK-FVAFKVKTTNPKK--YCVRPNTG-IILPRTS--CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95 (180)
Q Consensus 23 ~~~~~l~L~N~s~~-~vAFKVKTT~p~~--Y~VrP~~G-vI~P~~s--~~V~Vt~q~~~~~p~d~~~kDKFlVqs~~v~ 95 (180)
...-.+..+|.+.. -=-|.+..-.|+- -...|..| .|.|+.. +.-.+.+..... ...+=|+.|.+..-.
T Consensus 39 ~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~~~----~~l~lR~klsY~~~g 113 (131)
T 2e9g_A 39 LLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNPNK----APLRLKLRLTYDHFH 113 (131)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEEEECTTC----CCCCEEEEEEEECSS
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEECC
Confidence 35567788898764 3345555555664 45556666 5777443 222222222111 134566666666543
No 44
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.50 E-value=95 Score=21.05 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=15.8
Q ss_pred EEEEEEEcCCCCeEEEEEEeCCC
Q 030258 25 SCSMQLTNKTDKFVAFKVKTTNP 47 (180)
Q Consensus 25 ~~~l~L~N~s~~~vAFKVKTT~p 47 (180)
.-.|++...+.+.|.|||+.+.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 34667777667778888876654
No 45
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=21.43 E-value=1.7e+02 Score=20.57 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeC
Q 030258 21 KKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRP 54 (180)
Q Consensus 21 ~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP 54 (180)
+......++++|.++..+.||+.==..+-+.|.+
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~ 68 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRD 68 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCS
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCC
Confidence 4566788889999899999998755555555544
No 46
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.80 E-value=1.6e+02 Score=21.71 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCeEE---EEEEeCCCC---cEEEeCCceEeCCCCeEEE
Q 030258 26 CSMQLTNKTDKFVA---FKVKTTNPK---KYCVRPNTGIILPRTSCAV 67 (180)
Q Consensus 26 ~~l~L~N~s~~~vA---FKVKTT~p~---~Y~VrP~~GvI~P~~s~~V 67 (180)
..|+|.|.+++.+. |+|+=...+ .-+.-|..=+|.||.++.|
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 47899999987664 667654321 2233566678899998653
No 47
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.53 E-value=1e+02 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=16.8
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCC
Q 030258 24 SSCSMQLTNKTDKFVAFKVKTTNP 47 (180)
Q Consensus 24 ~~~~l~L~N~s~~~vAFKVKTT~p 47 (180)
..-.|++...+.+.|.|||+.+.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 345677777777778888876654
No 48
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=20.39 E-value=2.1e+02 Score=21.05 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCC-----CeEEEEEEeCCCCc-EEEeCCceEeCCCCeEEEEEEec
Q 030258 24 SSCSMQLTNKTD-----KFVAFKVKTTNPKK-YCVRPNTGIILPRTSCAVTVTMQ 72 (180)
Q Consensus 24 ~~~~l~L~N~s~-----~~vAFKVKTT~p~~-Y~VrP~~GvI~P~~s~~V~Vt~q 72 (180)
....|+|+|+.+ .-++|.++...-.. --+-|..|.|.++++..|.|-..
T Consensus 41 ~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 41 YLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp EEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 678999999977 46799998765443 35678889999999988887554
Done!