Citrus Sinensis ID: 030259

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDVSKSLEVPKEKSSEVNGPF
ccccccEEEccccEEEcccccccEEEEEEEEcccccEEEEEEEEccccEEEEEcccEEEccccEEEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEEcccHcccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHcccccccEEccEEEEEEEccccccccccccccccccccccccccccccHHHHHccHHccccccccccccccc
mstgdlvniqpselkfpfelkkqsscsmqltnktdKFVAFKvkttnpkkycvrpntgiilprtscAVTVTMqaqkeappdfqckdkfLLLSvvapdgatakdigpdmftkedgkVVEEFKLRVvyipanppspvpegseegssprafsqengnhhnssfddvskslevpkekssevngpf
mstgdlvniqpselkfpFELKKQSSCSMQLTNKTDKFVAfkvkttnpkkycvrpntgiilprTSCAVTVTMQAQKeappdfqckDKFLLLSVVAPdgatakdigpdmfTKEDGKVVEEFKLRVVYipanppspvpegSEEGSSPRAFSQENGNHHnssfddvskslevpkekssevngpf
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANppspvpegseegsspRAFSQENGNHHNSSFDDVSKSLEVPKEKSSEVNGPF
******************************TNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIP*****************************************************
***GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVV********************************************************
MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP*************************************************
***GDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN***************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDVSKSLEVPKEKSSEVNGPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
Q84WW5239 Vesicle-associated protei yes no 0.972 0.732 0.710 7e-68
Q8VZ95256 Vesicle-associated protei no no 0.888 0.625 0.664 3e-57
Q9SHC8239 Vesicle-associated protei no no 0.838 0.631 0.690 2e-54
Q9SYC9 571 Vesicle-associated protei no no 0.911 0.287 0.554 2e-45
O82213149 Vesicle-associated protei no no 0.7 0.845 0.619 5e-40
Q9LVU1220 Vesicle-associated protei no no 0.75 0.613 0.550 1e-37
B9DHD7 386 Vesicle-associated protei no no 0.722 0.336 0.556 9e-36
O60119 383 Vesicle-associated membra yes no 0.522 0.245 0.459 1e-15
P40075244 Vesicle-associated membra yes no 0.661 0.487 0.346 4e-14
Q10484 319 Uncharacterized protein C no no 0.627 0.354 0.373 3e-13
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function desciption
 Score =  256 bits (653), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 145/176 (82%), Gaps = 1/176 (0%)

Query: 1   MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNPKKYCVRPNTGII 59
           M+TGDLVNI P+ELKFPFELKKQSSCSMQLTNKT  + VAFKVKTTNP+KYCVRPNTG++
Sbjct: 1   MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEF 119
           LP  SC VTVTMQAQKEAP D QCKDKFL+ +VV  DG T+K++  +MF KE G+V+E+F
Sbjct: 61  LPGDSCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDF 120

Query: 120 KLRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDVSKSLEVPKEKSSE 175
           KLRVVYIPANPPSPVPEGSEEG+SP A   +  +   S FDDVS++ E   EKSSE
Sbjct: 121 KLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSE 176
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
225453969239 PREDICTED: vesicle-associated protein 1- 0.916 0.690 0.8 1e-71
147806482234 hypothetical protein VITISV_011904 [Viti 0.916 0.705 0.8 4e-71
449445449238 PREDICTED: vesicle-associated protein 1- 0.972 0.735 0.742 1e-70
255541208238 vesicle-associated membrane protein, put 0.977 0.739 0.801 8e-70
224067667237 predicted protein [Populus trichocarpa] 0.972 0.738 0.755 1e-69
18411240239 VAMP (vesicle-associated membrane protei 0.972 0.732 0.710 3e-66
21592874239 putative proline-rich protein [Arabidops 0.966 0.728 0.714 8e-66
297810165 380 hypothetical protein ARALYDRAFT_327754 [ 0.972 0.460 0.673 2e-63
3193330 399 contains similarity to Medicago sativa c 0.972 0.438 0.664 8e-63
388501352239 unknown [Lotus japonicus] 0.872 0.656 0.734 2e-61
>gi|225453969|ref|XP_002280265.1| PREDICTED: vesicle-associated protein 1-3 [Vitis vinifera] gi|296089177|emb|CBI38880.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/165 (80%), Positives = 143/165 (86%)

Query: 1   MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIIL 60
           M+TGDL+NI P+ELKFPFELKKQSSCS+QLTNKTD++VAFKVKTTNPKKYCVRPNTG++L
Sbjct: 1   MTTGDLLNIHPTELKFPFELKKQSSCSLQLTNKTDQYVAFKVKTTNPKKYCVRPNTGVVL 60

Query: 61  PRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFK 120
           P  +C VTVTMQAQKEAPPD QCKDKFLL SVVAP  ATAKDI  +MF K DGKVVEEFK
Sbjct: 61  PGATCNVTVTMQAQKEAPPDMQCKDKFLLQSVVAPTAATAKDITTEMFNKVDGKVVEEFK 120

Query: 121 LRVVYIPANPPSPVPEGSEEGSSPRAFSQENGNHHNSSFDDVSKS 165
           LRVVYIPANPPSPVPEGSEEGSSPRA   ENGN + S F  V  S
Sbjct: 121 LRVVYIPANPPSPVPEGSEEGSSPRASVHENGNQNTSLFCTVKGS 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147806482|emb|CAN69799.1| hypothetical protein VITISV_011904 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445449|ref|XP_004140485.1| PREDICTED: vesicle-associated protein 1-3-like [Cucumis sativus] gi|449521832|ref|XP_004167933.1| PREDICTED: vesicle-associated protein 1-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255541208|ref|XP_002511668.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548848|gb|EEF50337.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224067667|ref|XP_002302522.1| predicted protein [Populus trichocarpa] gi|222844248|gb|EEE81795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18411240|ref|NP_567153.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] gi|75148826|sp|Q84WW5.1|VAP13_ARATH RecName: Full=Vesicle-associated protein 1-3; AltName: Full=Plant VAP homolog 13; Short=AtPVA13; AltName: Full=VAMP-associated protein 1-3 gi|25054852|gb|AAN71916.1| putative proline-rich protein [Arabidopsis thaliana] gi|332656433|gb|AEE81833.1| VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21592874|gb|AAM64824.1| putative proline-rich protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810165|ref|XP_002872966.1| hypothetical protein ARALYDRAFT_327754 [Arabidopsis lyrata subsp. lyrata] gi|297318803|gb|EFH49225.1| hypothetical protein ARALYDRAFT_327754 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3193330|gb|AAC19312.1| contains similarity to Medicago sativa corC (GB:L22305) [Arabidopsis thaliana] gi|7267104|emb|CAB80775.1| putative proline-rich protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.972 0.732 0.630 6.3e-53
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.888 0.625 0.577 5.6e-45
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.838 0.631 0.598 5.2e-42
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.7 0.845 0.619 7e-38
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.672 0.55 0.586 2.4e-35
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.905 0.255 0.485 1.1e-34
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.677 0.316 0.565 1.5e-33
UNIPROTKB|G4N022 285 MGG_06183 "Uncharacterized pro 0.655 0.414 0.412 3.2e-17
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.661 0.487 0.346 7.7e-16
UNIPROTKB|Q5U511243 vapb "LOC495400 protein" [Xeno 0.655 0.485 0.357 1.4e-15
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 111/176 (63%), Positives = 130/176 (73%)

Query:     1 MSTGDLVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTNPKKYCVRPNTGII 59
             M+TGDLVNI P+ELKFPFELKKQSSCSMQLTNKT  + VAFKVKTTNP+KYCVRPNTG++
Sbjct:     1 MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60

Query:    60 LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEF 119
             LP  SC VTVTMQAQKEAP D QCKDKFL+ +VV  DG T+K++  +MF KE G+V+E+F
Sbjct:    61 LPGDSCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDF 120

Query:   120 KLRVVYIPANXXXXXXXXXXXXXXXRAFSQENGNHHNSSFDDVSKSLEVPKEKSSE 175
             KLRVVYIPAN                A   +  +   S FDDVS++ E   EKSSE
Sbjct:   121 KLRVVYIPANPPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSEKSSE 176
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WW5VAP13_ARATHNo assigned EC number0.71020.97220.7322yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026378001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (239 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 2e-29
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-19
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  103 bits (260), Expect = 2e-29
 Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 2/98 (2%)

Query: 6   LVNIQPSE-LKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTS 64
           L+ I P + L F     KQ + ++ LTN +DK VAFKVKTTNPK+Y VRPN GI+ P  S
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 65  CAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKD 102
             +T+T Q   + P D   KDKF++    APD A    
Sbjct: 61  VTITITRQPFDKEPGD-PKKDKFVIQYTEAPDDAKDAK 97

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.96
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.91
PF14874102 PapD-like: Flagellar-associated PapD-like 98.73
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 97.44
PF14646426 MYCBPAP: MYCBP-associated protein family 94.86
PRK09918230 putative fimbrial chaperone protein; Provisional 94.73
PRK15249253 fimbrial chaperone protein StbB; Provisional 94.39
PRK15211229 fimbrial chaperone protein PefD; Provisional 93.67
PRK11385236 putativi pili assembly chaperone; Provisional 93.58
PRK15299227 fimbrial chaperone protein StiB; Provisional 93.52
PRK15295226 fimbrial assembly chaperone SthB; Provisional 93.41
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 93.41
PRK09926246 putative chaperone protein EcpD; Provisional 93.34
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 93.24
PRK15290243 lfpB fimbrial chaperone protein; Provisional 92.22
PRK15246233 fimbrial assembly chaperone StbE; Provisional 91.54
PRK15192234 fimbrial chaperone BcfG; Provisional 89.52
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 87.7
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 87.54
PRK15254239 fimbrial chaperone protein StdC; Provisional 85.81
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 85.63
PRK15195229 fimbrial chaperone protein FimC; Provisional 84.7
PRK15188228 fimbrial chaperone protein BcfB; Provisional 83.77
PRK15218226 fimbrial chaperone protein PegB; Provisional 81.38
TIGR03079399 CH4_NH3mon_ox_B methane monooxygenase/ammonia mono 80.22
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.96  E-value=4.6e-29  Score=205.22  Aligned_cols=152  Identities=41%  Similarity=0.677  Sum_probs=125.5

Q ss_pred             CCCCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030259            1 MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP   79 (180)
Q Consensus         1 m~~~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~   79 (180)
                      |+.+.+|.|+|. +|.|++++.+++.|.|+|+|+++.++|||||||+|++|||||+.|+|.||+++.|.|.+|+....|.
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~   82 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP   82 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence            456789999995 8999999998999999999999999999999999999999999999999999999999999888899


Q ss_pred             CCCCCCeEEEEEEEcCCCCCccccccccccccC--CCeeEEEEeEEEEe-cCCCCCCCCCC---CCCCCCCccccccCCC
Q 030259           80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED--GKVVEEFKLRVVYI-PANPPSPVPEG---SEEGSSPRAFSQENGN  153 (180)
Q Consensus        80 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~--~~~v~e~KLrV~~~-p~~~~s~v~~~---~e~~~s~~~~~~~~~~  153 (180)
                      |++|+|||+||++.++.+ +..++ .++|....  +..+.+.+++|.|+ |..+++....+   ...+........++..
T Consensus        83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (218)
T KOG0439|consen   83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKLQKAKKKEAEKEAFGEATKE  160 (218)
T ss_pred             hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccccccccccccCCccccccccccc
Confidence            999999999999999986 33343 36677655  78999999999999 66666555444   4444444444444333


Q ss_pred             C
Q 030259          154 H  154 (180)
Q Consensus       154 ~  154 (180)
                      .
T Consensus       161 ~  161 (218)
T KOG0439|consen  161 A  161 (218)
T ss_pred             c
Confidence            3

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 4e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 6e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 1e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 2e-11
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 5e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 6e-05
1msp_A126 Major Sperm Protein, Alpha Isoform (Recombinant), P 8e-04
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 6   LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSC 65
           LV   PS+LKF        + +++L N +D+ V FKVKTT P++YCVRPN+GII P +  
Sbjct: 15  LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIV 74
Query: 66  AVTVTMQAQKEAPPDFQCKDKFLLLSVVAP 95
            V+V +Q   +  P+ + K KF++ ++ AP
Sbjct: 75  TVSVMLQPF-DYDPNEKSKHKFMVQTIFAP 103
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure
>pdb|1MSP|A Chain A, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6 Length = 126 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 3e-38
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 6e-36
2cri_A147 Vesicle-associated membrane protein-associated pro 1e-33
1z9l_A128 Vesicle-associated membrane protein-associated pro 2e-33
1m1s_A116 WR4; structural genomics, major sperm protein, bio 2e-27
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-23
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 6e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  127 bits (321), Expect = 3e-38
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 1   MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
           +  G L++I P+ EL F      +    + LTN T   VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKE-DGKVVEE 118
            P  S  + V+             +D+FL+++      +         F KE     V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 FKLRVVYI-PANPPSPVPEGSEEG 141
            +LR   +  + P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.46
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.21
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.16
3qis_A 366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.65
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.85
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.45
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 94.11
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 92.18
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 89.99
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 89.74
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 89.05
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 88.81
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 88.04
1yew_A382 Particulate methane monooxygenase, B subunit; memb 87.05
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 86.39
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 84.42
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=4.7e-40  Score=258.33  Aligned_cols=134  Identities=28%  Similarity=0.457  Sum_probs=123.6

Q ss_pred             CCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCCCC
Q 030259            3 TGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDF   81 (180)
Q Consensus         3 ~~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~d~   81 (180)
                      .+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4689999999 8999999999999999999999999999999999999999999999999999999999999854    2


Q ss_pred             CCCCeEEEEEEEcC--CCCCccccccccccccCCCeeEEEEeEEEEe-cCCCCCCCCCCCCCC
Q 030259           82 QCKDKFLLLSVVAP--DGATAKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEEG  141 (180)
Q Consensus        82 ~~kDKFlVqs~~v~--~~~~~~di~~~~f~k~~~~~v~e~KLrV~~~-p~~~~s~v~~~~e~~  141 (180)
                      +|+|||+||++.++  ++.+..|+. ++|++..+..++++||||+|+ +++|+|++++|.++|
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~  152 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence            68999999999999  565666776 899998888999999999999 889999999998876
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 180
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 2e-41
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 4e-37
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 6e-27
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-26
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (339), Expect = 2e-41
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 1   MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGII 59
           +  G L++I P+ EL F      +    + LTN T   VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKE-DGKVVEE 118
            P  S  + V+             +D+FL+++      +         F KE     V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 FKLRVVYI-PANPPSPVPEGSEEG 141
            +LR   +  + P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 100.0
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.93
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 96.17
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 94.95
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 93.25
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 90.24
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 85.3
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-35  Score=231.72  Aligned_cols=136  Identities=27%  Similarity=0.434  Sum_probs=120.2

Q ss_pred             CCCCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecCCccCCC
Q 030259            1 MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP   79 (180)
Q Consensus         1 m~~~~lL~I~P~-eL~F~~~~~k~~~~~l~L~N~s~~~vAFKVKTT~p~~Y~VrP~~GvI~P~~s~~V~Vt~q~~~~~p~   79 (180)
                      |..|+||.|+|. +|+|.++++++++|.|+|+|.++++||||||||+|++|+|||++|+|.||++++|.|++++.    .
T Consensus        13 ~~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~----~   88 (152)
T d1wica_          13 VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGG----L   88 (152)
T ss_dssp             CBCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSS----S
T ss_pred             ccCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCC----C
Confidence            345789999997 69999999999999999999999999999999999999999999999999999999999874    2


Q ss_pred             CCCCCCeEEEEEEEcCCCCC--ccccccccccccCCCeeEEEEeEEEEe-cCCCCCCCCCCCCCC
Q 030259           80 DFQCKDKFLLLSVVAPDGAT--AKDIGPDMFTKEDGKVVEEFKLRVVYI-PANPPSPVPEGSEEG  141 (180)
Q Consensus        80 d~~~kDKFlVqs~~v~~~~~--~~di~~~~f~k~~~~~v~e~KLrV~~~-p~~~~s~v~~~~e~~  141 (180)
                      .++|+|||+|+++.+++..+  ..|+. +||+...+..++++||+|+|+ ++.|++++.+|+++|
T Consensus        89 ~~~~kdKFli~~~~v~~~~~~~~~d~~-~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~~G  152 (152)
T d1wica_          89 TVSAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG  152 (152)
T ss_dssp             CCCSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred             cccCCCcEEEEEEEeCCCCCCCccCHH-HHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCCCC
Confidence            45789999999999986543  24554 789887788999999999999 678888888887765
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure