Query 030260
Match_columns 180
No_of_seqs 129 out of 1067
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02642 copper, zinc superoxi 100.0 8.7E-46 1.9E-50 294.6 19.0 145 1-147 1-157 (164)
2 PLN02386 superoxide dismutase 100.0 1.4E-45 3.1E-50 290.7 18.2 138 10-147 2-151 (152)
3 cd00305 Cu-Zn_Superoxide_Dismu 100.0 6.2E-40 1.3E-44 256.2 18.4 136 10-146 1-143 (144)
4 PLN02957 copper, zinc superoxi 100.0 7E-40 1.5E-44 274.6 17.2 150 9-170 80-229 (238)
5 PRK15388 Cu/Zn superoxide dism 100.0 4.1E-39 8.9E-44 258.9 17.3 126 17-145 34-176 (177)
6 KOG0441 Cu2+/Zn2+ superoxide d 100.0 8.7E-39 1.9E-43 250.0 14.0 148 10-160 2-151 (154)
7 PF00080 Sod_Cu: Copper/zinc s 100.0 4.3E-38 9.3E-43 244.0 15.5 133 12-144 1-142 (142)
8 PRK10290 superoxide dismutase; 100.0 1E-37 2.2E-42 250.3 17.2 123 18-144 33-172 (173)
9 KOG4656 Copper chaperone for s 100.0 4.1E-38 8.9E-43 256.3 8.0 165 4-177 76-245 (247)
10 COG2032 SodC Cu/Zn superoxide 100.0 1.7E-35 3.6E-40 236.9 15.3 133 11-144 30-178 (179)
11 PF07452 CHRD: CHRD domain; I 78.1 13 0.00028 27.2 6.9 37 20-56 18-55 (119)
12 smart00754 CHRD A domain in th 76.3 12 0.00025 27.6 6.3 37 20-56 18-54 (118)
13 KOG4656 Copper chaperone for s 53.7 8.1 0.00018 32.5 1.6 28 141-168 187-222 (247)
14 PF07731 Cu-oxidase_2: Multico 36.6 44 0.00096 24.6 3.2 21 37-57 43-63 (138)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 32.4 39 0.00085 21.6 2.1 19 39-57 30-48 (66)
16 PF08896 DUF1842: Domain of un 30.9 1.4E+02 0.0031 22.5 5.1 35 10-44 19-55 (114)
17 PF15357 SEEK1: Psoriasis susc 25.1 35 0.00076 26.0 0.9 30 66-95 33-62 (149)
18 COG5637 Predicted integral mem 20.5 1.3E+02 0.0029 24.9 3.4 28 21-48 151-178 (217)
No 1
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=8.7e-46 Score=294.59 Aligned_cols=145 Identities=65% Similarity=1.073 Sum_probs=134.1
Q ss_pred CCccccccceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 1 METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGA 80 (180)
Q Consensus 1 ~~~~~~~~~~~Ava~l~~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~ 80 (180)
||+|. +-.+|+|+|++++.++|+|+|+|..++.|+|+++|+||+||+|+|||||+|||+++|.|||+||||.++.||.
T Consensus 1 ~~~~~--~~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~ 78 (164)
T PLN02642 1 MEAPR--GNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78 (164)
T ss_pred CCccC--CCeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCC
Confidence 67664 5578999999888899999999987667999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC------------CCCceeEEEeee
Q 030260 81 PSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK------------GKFSSLSLILIT 147 (180)
Q Consensus 81 p~~~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~------------g~~~~cgvI~~~ 147 (180)
|++..||+||||||.++++|+++++++++.++|.++++|+|||||||+.+|||+. |.|++||||.+.
T Consensus 79 ~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 79 PNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred CCcCCCcccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999853 466789998865
No 2
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=1.4e-45 Score=290.74 Aligned_cols=138 Identities=61% Similarity=1.049 Sum_probs=129.0
Q ss_pred eeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 10 VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTG 89 (180)
Q Consensus 10 ~~Ava~l~~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~p~~~~~h~G 89 (180)
.+|+|+|+++..++|+|+|+|..++.+.|+++|+||+||.|+|||||+|||+++|.|||+||||.++.|+.|++..||+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 57999999988899999999987667999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC------------CCCceeEEEeee
Q 030260 90 DLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK------------GKFSSLSLILIT 147 (180)
Q Consensus 90 DLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~------------g~~~~cgvI~~~ 147 (180)
|||||.++++|++++++++++++|.++++|+|||||||+++|||+. |.|++||||+++
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 9999999999999999999999999999999999999999999853 456788888765
No 3
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=6.2e-40 Score=256.20 Aligned_cols=136 Identities=53% Similarity=0.927 Sum_probs=125.5
Q ss_pred eeEEEEEcCC-CCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 10 VKAVALISGA-TSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (180)
Q Consensus 10 ~~Ava~l~~~-~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (180)
++|+|.|++. +.++|+|+|+|..+ .|+|+++++||+||.|+|||||+|+|+++|.|+|+||||.++.|+.|.+..||+
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~ 79 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHA 79 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCC
Confidence 3689999864 57999999999987 699999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCCC------CCceeEEEee
Q 030260 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG------KFSSLSLILI 146 (180)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~g------~~~~cgvI~~ 146 (180)
||||||.++++|++++++++++++|++..+++|||||||+.+|||..+ .+.+||+|..
T Consensus 80 GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~~p~~~sg~~~~~G~~~a 143 (144)
T cd00305 80 GDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGKGPDELSGGTGNAGVRVA 143 (144)
T ss_pred CcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCCCCCcccccceeeEeEEe
Confidence 999999999999999999999999998889999999999999999753 5678998843
No 4
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=7e-40 Score=274.57 Aligned_cols=150 Identities=27% Similarity=0.428 Sum_probs=132.8
Q ss_pred ceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 9 TVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (180)
Q Consensus 9 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (180)
...|+|.++++ .|.|+|+|+|.+++.+.|+++|+|||||.|+|||||+|||+++|.|||+||||.+++|+ .+|+
T Consensus 80 ~~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~ 153 (238)
T PLN02957 80 VSAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPL 153 (238)
T ss_pred cceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCC
Confidence 45689999874 69999999998766699999999999999999999999999999999999999999997 5799
Q ss_pred CCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCCCCCceeEEEeeeccccccccceEEecccchhhH
Q 030260 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGKFSSLSLILITNLFYYKDTAYWYKCTQKYVYF 168 (180)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~g~~~~cgvI~~~~~~~~~~~~~~~~~~~~~~~~ 168 (180)
||||||.++++|++.++++++.++| ++|+|||||||+.+|+... ..+||||+|+..+++|.=. +=+|+++..|.
T Consensus 154 GDLgni~~~~~G~a~~~~~~~~~~l---~~iiGrs~vih~~~D~~~~--~~~~gvi~rsag~~~n~k~-~c~c~g~~~w~ 227 (238)
T PLN02957 154 GDLGTLEADENGEATFSGTKEKLKV---WDLIGRSLAVYATADKSGP--GIAAAVIARSAGVGENYKK-LCSCDGTVIWE 227 (238)
T ss_pred CccCCEEeCCCceEEEEEECCCcCc---cccCCcEEEEEeCCCCCCC--CeEEEEEecccccccCCce-EEeCCCcEEec
Confidence 9999999999999999999888887 6999999999999997533 4899999999766665432 34999999998
Q ss_pred HH
Q 030260 169 KL 170 (180)
Q Consensus 169 ~~ 170 (180)
+.
T Consensus 228 ~~ 229 (238)
T PLN02957 228 ST 229 (238)
T ss_pred cc
Confidence 76
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=4.1e-39 Score=258.87 Aligned_cols=126 Identities=26% Similarity=0.484 Sum_probs=112.4
Q ss_pred cCCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCC--------CCCCCCCCCCCCCC-CCCCCCCCCCC
Q 030260 17 SGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN--------GCNSTGPHFNPLKK-DHGAPSDNERH 87 (180)
Q Consensus 17 ~~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~--------~c~saGgHfnP~~~-~hg~p~~~~~h 87 (180)
++++++.|+|+|+|..++ |+|+++++|||||.|+|||||+|||+. +|.||||||||++. .|+.|++..+|
T Consensus 34 ~~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H 112 (177)
T PRK15388 34 SGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGH 112 (177)
T ss_pred CCCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCC
Confidence 457899999999998765 999999999999999999999999973 28999999999987 79999888899
Q ss_pred CCCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC--------CCCceeEEEe
Q 030260 88 TGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK--------GKFSSLSLIL 145 (180)
Q Consensus 88 ~GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~--------g~~~~cgvI~ 145 (180)
+||||||+++++|++++.++++.+. ++++|+|||||||+++|||+. |.|++||||.
T Consensus 113 ~GDLpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa~~DD~~~~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 113 LGDLPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIE 176 (177)
T ss_pred cCcCcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEECCCCCCCCCCCcCCCCCceEEEEeec
Confidence 9999999999999999999988764 347999999999999999852 5678899985
No 6
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-39 Score=249.98 Aligned_cols=148 Identities=49% Similarity=0.752 Sum_probs=131.1
Q ss_pred eeEEEEEcCCC-CeEEEEEEEEcC-CCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 10 VKAVALISGAT-SVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERH 87 (180)
Q Consensus 10 ~~Ava~l~~~~-~v~G~v~f~q~~-~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~p~~~~~h 87 (180)
.+|+|+++++. .|.|+|.|+|.. ...+.|++.|+||+||.|+||||++||.+++|.|||+||||.+++||.|.++.||
T Consensus 2 ~~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH 81 (154)
T KOG0441|consen 2 AQAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRH 81 (154)
T ss_pred cceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCccccccc
Confidence 37899999865 899999999944 4489999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCCCCCceeEEEeeeccccccccceEEe
Q 030260 88 TGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGKFSSLSLILITNLFYYKDTAYWYK 160 (180)
Q Consensus 88 ~GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~g~~~~cgvI~~~~~~~~~~~~~~~~ 160 (180)
+|||||+.++.+|.+...+.+.+++|+|+++|+|||+|||+.+||++.|.. --+..+++.|.|.+|+.+.
T Consensus 82 ~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~---~~s~ktgnag~r~aCgvi~ 151 (154)
T KOG0441|consen 82 VGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGH---ELSKKTGNAGARPACGVIG 151 (154)
T ss_pred cccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCch---hhhhhccccCCCccceeee
Confidence 999999999999999999999999999999999999999999999987662 2333455556666665553
No 7
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=4.3e-38 Score=244.02 Aligned_cols=133 Identities=43% Similarity=0.788 Sum_probs=123.2
Q ss_pred EEEEEcC-CCCeEEEEEEEEcCCC-cEEEEEEEeecCCCceeEEEecCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 12 AVALISG-ATSVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDT-TNGCNSTGPHFNPLKKDHGAPSDNERHT 88 (180)
Q Consensus 12 Ava~l~~-~~~v~G~v~f~q~~~g-~v~V~~~v~GL~~g~hg~HIHe~gd~-~~~c~saGgHfnP~~~~hg~p~~~~~h~ 88 (180)
|+|+|++ +++|+|+|+|+|..+. .+.|+++++||++|.|+|||||+|+| +.+|.++|+||||.++.|+.|....|++
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 8999985 5789999999999854 59999999999999999999999999 7789999999999999999998778999
Q ss_pred CCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCC------CCCCCceeEEE
Q 030260 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDL------GKGKFSSLSLI 144 (180)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~------~~g~~~~cgvI 144 (180)
|||++++++.+|.++..|++..++|+++++|+|||||||+.+||+ ..|.|.+||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDFTSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTTTHHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCcccccCCCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999998 34778999998
No 8
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=1e-37 Score=250.27 Aligned_cols=123 Identities=28% Similarity=0.530 Sum_probs=109.0
Q ss_pred CCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCC----C----CCCCCCCCCCCCC-CCCCCCCCCCCC
Q 030260 18 GATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN----G----CNSTGPHFNPLKK-DHGAPSDNERHT 88 (180)
Q Consensus 18 ~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~----~----c~saGgHfnP~~~-~hg~p~~~~~h~ 88 (180)
+++++.|+++|+|.+++ |+|+++++||+||.|+|||||+|||+. + |.||||||||.++ .|+.|.. .+|+
T Consensus 33 ~~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~ 110 (173)
T PRK10290 33 GVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHL 110 (173)
T ss_pred CCCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCc
Confidence 35899999999998765 999999999999999999999999973 2 8999999999998 7888864 6899
Q ss_pred CCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC--------CCCceeEEE
Q 030260 89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK--------GKFSSLSLI 144 (180)
Q Consensus 89 GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~--------g~~~~cgvI 144 (180)
||||||+++++|+++++++++.+. +.++|+|||||||+++|||+. |.|++||||
T Consensus 111 GDL~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~~~DD~~~~~~~~GnaG~RiACGVI 172 (173)
T PRK10290 111 GDLPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHVGGDNMSDQPKPLGGGGERYACGVI 172 (173)
T ss_pred CcccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEECCCCCCCCCCCcCCCCcceEEEEeE
Confidence 999999999999999999988764 357999999999999999863 466788888
No 9
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=256.34 Aligned_cols=165 Identities=35% Similarity=0.610 Sum_probs=144.2
Q ss_pred cccccceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 030260 4 GATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSD 83 (180)
Q Consensus 4 ~~~~~~~~Ava~l~~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnP~~~~hg~p~~ 83 (180)
|+......|++.+.+.+.|.|.|+|.|.....++|++++.||+||.|++|||||||++++|.|+|.||||+..+|++|+
T Consensus 76 psaval~at~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~- 154 (247)
T KOG4656|consen 76 PSAVALLATVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPN- 154 (247)
T ss_pred hhHHHHHHHHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCC-
Confidence 3334445566677777899999999999988899999999999999999999999999999999999999999999885
Q ss_pred CCCCCCCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC-----CCCceeEEEeeeccccccccceE
Q 030260 84 NERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK-----GKFSSLSLILITNLFYYKDTAYW 158 (180)
Q Consensus 84 ~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~-----g~~~~cgvI~~~~~~~~~~~~~~ 158 (180)
.|||||+.++++|++.+++.|.+|++ |++||||+||.+..||++. +.+.+||||+|+..+.+|.-. +
T Consensus 155 ----~gDLGn~~ad~nGraf~s~~de~Lkv---wdlIGRsvVi~k~~ddlgg~p~nsge~la~gvIARSAGv~eN~Kq-i 226 (247)
T KOG4656|consen 155 ----EGDLGNNRADKNGRAFFSAPDEKLKV---WDLIGRSVVISKSLDDLGGEPGNSGERLACGVIARSAGVWENNKQ-I 226 (247)
T ss_pred ----cccccccccccCCcEEEecccccccH---hhhhceeEEEeccccccCCCCCCcCcceeEEEeeeccccccCcce-e
Confidence 49999999999999999999999998 6999999999999999653 566799999999777765543 3
Q ss_pred EecccchhhHHHHHHHhhc
Q 030260 159 YKCTQKYVYFKLSVLLENN 177 (180)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~ 177 (180)
-||+++..|.++.+.|-++
T Consensus 227 CaCdG~tiWeern~~la~k 245 (247)
T KOG4656|consen 227 CACDGKTIWEERNDPLAGK 245 (247)
T ss_pred eecCCeEehhhcCCccccc
Confidence 4999999999998777654
No 10
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=236.87 Aligned_cols=133 Identities=35% Similarity=0.588 Sum_probs=120.6
Q ss_pred eEEEEEc-CCCCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEecCCCCCC------CCCCCCCCCCCC-CCCCCCCC
Q 030260 11 KAVALIS-GATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTN------GCNSTGPHFNPL-KKDHGAPS 82 (180)
Q Consensus 11 ~Ava~l~-~~~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe~gd~~~------~c~saGgHfnP~-~~~hg~p~ 82 (180)
++.+.+. +.++..|+|+|++...+ +.++..+.+|+||.|+|||||+|+|++ .|.||||||||. ...|+.|+
T Consensus 30 ~~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~ 108 (179)
T COG2032 30 KANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPN 108 (179)
T ss_pred cceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCC
Confidence 4445554 45789999999999876 999999999999999999999999987 599999999999 78999999
Q ss_pred CCCCCCCCCCceEeCCCCcEEEEEEecceecCCCCCcCCcEEEEeeCCCCCCC--------CCCceeEEE
Q 030260 83 DNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGK--------GKFSSLSLI 144 (180)
Q Consensus 83 ~~~~h~GDLgni~~~~~G~~~~~~~d~~l~L~g~~sIiGRSiVIH~~~Dd~~~--------g~~~~cgvI 144 (180)
+..+|+||||+|++++||++...|++++++|.+..++.|||||||+.+|||.. |.|.+||||
T Consensus 109 ~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P~p~G~aG~R~ACGVI 178 (179)
T COG2032 109 ADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQPEPLGGAGARVACGVI 178 (179)
T ss_pred CCCCCcCcCcceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCCccCCCCccceeeeee
Confidence 98899999999999999999999999999999999999999999999999864 457788888
No 11
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=78.15 E-value=13 Score=27.19 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=30.6
Q ss_pred CCeEEEEEEEEcCCC-cEEEEEEEeecCCCceeEEEec
Q 030260 20 TSVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHA 56 (180)
Q Consensus 20 ~~v~G~v~f~q~~~g-~v~V~~~v~GL~~g~hg~HIHe 56 (180)
..-.|.+.|+=..++ .+.+++.++||....-.+|||.
T Consensus 18 s~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 18 SSASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 366799999877765 6889999999966678999998
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=76.26 E-value=12 Score=27.61 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCeEEEEEEEEcCCCcEEEEEEEeecCCCceeEEEec
Q 030260 20 TSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHA 56 (180)
Q Consensus 20 ~~v~G~v~f~q~~~g~v~V~~~v~GL~~g~hg~HIHe 56 (180)
....|.+.|+-..++.+..++.++||..-.-..|||+
T Consensus 18 t~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 18 TGAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CCcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 3678999998875567889999999986433899998
No 13
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=53.69 E-value=8.1 Score=32.51 Aligned_cols=28 Identities=4% Similarity=-0.371 Sum_probs=23.2
Q ss_pred eEEEeee--------ccccccccceEEecccchhhH
Q 030260 141 LSLILIT--------NLFYYKDTAYWYKCTQKYVYF 168 (180)
Q Consensus 141 cgvI~~~--------~~~~~~~~~~~~~~~~~~~~~ 168 (180)
.-||..+ +++|++++|++|+|+++...+
T Consensus 187 svVi~k~~ddlgg~p~nsge~la~gvIARSAGv~eN 222 (247)
T KOG4656|consen 187 SVVISKSLDDLGGEPGNSGERLACGVIARSAGVWEN 222 (247)
T ss_pred eEEEeccccccCCCCCCcCcceeEEEeeeccccccC
Confidence 4566666 789999999999999998754
No 14
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=36.62 E-value=44 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.5
Q ss_pred EEEEEEeecCCCceeEEEecC
Q 030260 37 HVKGKITGLKPGLHGFHIHAL 57 (180)
Q Consensus 37 ~V~~~v~GL~~g~hg~HIHe~ 57 (180)
.+++.+.+.....|.||+|-+
T Consensus 43 ~v~~~l~N~~~~~Hp~HlHG~ 63 (138)
T PF07731_consen 43 VVEIVLQNNGSMPHPFHLHGH 63 (138)
T ss_dssp EEEEEEEECTTSSEEEEETTS
T ss_pred EEEEEEECCCCCccceEEEee
Confidence 677888887777899999964
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=32.36 E-value=39 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=13.9
Q ss_pred EEEEeecCCCceeEEEecC
Q 030260 39 KGKITGLKPGLHGFHIHAL 57 (180)
Q Consensus 39 ~~~v~GL~~g~hg~HIHe~ 57 (180)
.++++.||||.|-|+|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 7788889999988888763
No 16
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=30.90 E-value=1.4e+02 Score=22.46 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=25.1
Q ss_pred eeEEEEE--cCCCCeEEEEEEEEcCCCcEEEEEEEee
Q 030260 10 VKAVALI--SGATSVKGSLHFVQGPNGVTHVKGKITG 44 (180)
Q Consensus 10 ~~Ava~l--~~~~~v~G~v~f~q~~~g~v~V~~~v~G 44 (180)
.-..+++ .+++.|.|.++++|...-++.|...+.|
T Consensus 19 ~L~L~L~V~~~~~~VsG~a~ItQat~ppl~~~s~v~G 55 (114)
T PF08896_consen 19 VLTLDLLVNTPDKSVSGRARITQATNPPLNFHSDVWG 55 (114)
T ss_pred EEEEEEEEeCCCCEEEeEEEEEEecCCCcceEEEeEE
Confidence 3334444 3578999999999988656777777766
No 17
>PF15357 SEEK1: Psoriasis susceptibility 1 candidate 1
Probab=25.14 E-value=35 Score=26.03 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceE
Q 030260 66 STGPHFNPLKKDHGAPSDNERHTGDLGNIV 95 (180)
Q Consensus 66 saGgHfnP~~~~hg~p~~~~~h~GDLgni~ 95 (180)
..-+|.||....|--|.+.-.|+|||-.+.
T Consensus 33 t~pph~npdrlch~e~anhfwhagdlq~~t 62 (149)
T PF15357_consen 33 TRPPHINPDRLCHMEPANHFWHAGDLQTMT 62 (149)
T ss_pred ccCCCCCcchhhcccccccccccchhhhhh
Confidence 344899998887877777788999996543
No 18
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=20.49 E-value=1.3e+02 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.3
Q ss_pred CeEEEEEEEEcCCCcEEEEEEEeecCCC
Q 030260 21 SVKGSLHFVQGPNGVTHVKGKITGLKPG 48 (180)
Q Consensus 21 ~v~G~v~f~q~~~g~v~V~~~v~GL~~g 48 (180)
.-+|.|+|+..++..+.|.+.++--+||
T Consensus 151 ~NsG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 151 ENSGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred CCCccEEeeeCCCCceEEEEEEEecCCc
Confidence 6689999999987667899998876665
Done!