BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030262
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G L + G FD++ + FSF+LGKG VI+AWDIA+ +MKVGEV +TCKPEYAY
Sbjct: 75 VHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAY 133
Query: 89 GSAGSPPDVPPDATLIFEVELVACR 113
GSAGSPP +PP+ATL+FEVEL +
Sbjct: 134 GSAGSPPKIPPNATLVFEVELFEFK 158
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 48 DNTVFSFELGKGSVI---RAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPPDATL 103
D FE+G+G + + A++ M+ GE + + KP YA+GS G +PP+A L
Sbjct: 204 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAEL 263
Query: 104 IFEVELVACRPRKGS 118
+E+ L + K S
Sbjct: 264 KYELHLKSFEKAKES 278
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G L + G FD++ + FSF+LGKG VI+AWDIA+ +MKVGEV +TCKPEYAY
Sbjct: 59 VHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAY 117
Query: 89 GSAGSPPDVPPDATLIFEVEL 109
GSAGSPP +PP+ATL+FEVEL
Sbjct: 118 GSAGSPPKIPPNATLVFEVEL 138
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G L + G FD++ + FSF+LGKG VI+AWDIA+ +MKVGEV +TCKPEYAY
Sbjct: 55 VHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAY 113
Query: 89 GSAGSPPDVPPDATLIFEVEL 109
GSAGSPP +PP+ATL+FEVEL
Sbjct: 114 GSAGSPPKIPPNATLVFEVEL 134
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G L + G FD++ + FSF+LGKG VI+AWDIA+ +MKVGE+ ++TCKPEYAY
Sbjct: 54 VHYTGWLLD-GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAY 112
Query: 89 GSAGSPPDVPPDATLIFEVELVACR 113
GSAGSPP +PP+ATL+FEVEL +
Sbjct: 113 GSAGSPPKIPPNATLVFEVELFEFK 137
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 55 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAY 113
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 114 GSAGSLPKIPSNATLFFEIELL 135
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKG---SVIRAWDIALRSMKVGEVAKLTCKPE 85
+H EG G +FD +F +G+G + D AL M+ E L P
Sbjct: 170 IHLEGRCG--GRMFDCRD-----VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR 222
Query: 86 YAYGSAGSPP-DVPPDATLIFEVELVACRPRKGS 118
Y +G AG P + P+A LI+EV L + K S
Sbjct: 223 YGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKES 256
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 59 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 117
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 118 GSAGSLPKIPSNATLFFEIELL 139
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 59 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 117
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 118 GSAGSLPKIPSNATLFFEIELL 139
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 43 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 101
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 102 GSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 43 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 101
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 102 GSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY+G L+ G+ FD++H+ N F F LGKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 59 VHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 117
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GSAGS P +P +ATL FE+EL+
Sbjct: 118 GSAGSLPKIPSNATLFFEIELL 139
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKG---SVIRAWDIALRSMKVGEVAKLTCKPE 85
+H EG G +FD +F +G+G + D AL M+ E L P
Sbjct: 174 IHLEGRCG--GRMFDCRD-----VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPR 226
Query: 86 YAYGSAGSPP-DVPPDATLIFEVEL 109
Y +G AG P + P+A LI+EV L
Sbjct: 227 YGFGEAGKPKFGIEPNAELIYEVTL 251
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G LA G+ FD++H+ N F F +GKG VI+AWDI + +MK GE+ L CKPEYAY
Sbjct: 55 VHYNGKLA-NGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAY 113
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
G+ GS P +P +ATL FEVEL+
Sbjct: 114 GATGSLPKIPSNATLFFEVELL 135
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKG---SVIRAWDIALRSMKVGEVAKLTCKPE 85
+H EG G VFD +F +G+G + D AL M+ E L P
Sbjct: 170 IHLEGRCG--GRVFDCRD-----VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPR 222
Query: 86 YAYGSAGSPP-DVPPDATLIFEVEL 109
Y +G AG P + P+A LI+EV L
Sbjct: 223 YGFGEAGKPKFGIEPNAELIYEVTL 247
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G+L E G FD++ + FSF LG+G+VI+ WD+ + +M GEVA+ T + +Y Y
Sbjct: 38 VHYVGTL-ENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGY 96
Query: 89 GSAGSPPDVPPDATLIFEVEL 109
G AGSPP +P ATLIFEVEL
Sbjct: 97 GDAGSPPKIPGGATLIFEVEL 117
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G+LA+ G+VFD++ F F +G+G VIR WD + M VG+ AKL C P+YAY
Sbjct: 25 VHYTGTLAD-GKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAY 83
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
GS G P +PP+ATL F+VEL+
Sbjct: 84 GSRGHPGVIPPNATLTFDVELL 105
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP+ATLIF+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPNATLIFDVELL 104
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK GE A T PE AY
Sbjct: 35 VHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAY 93
Query: 89 GSAGSPPDVPPDATLIFEVELVAC 112
G +GSPP +P +ATL F+VEL++
Sbjct: 94 GESGSPPTIPANATLQFDVELLSW 117
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TV G L + H++ F F+ + +VI D A+ +MK GEVA +T PEYA
Sbjct: 267 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYA 326
Query: 88 YGSAGSPPD--VPPDATLIFEVELVA 111
YGS S D VPP++T+I+EVELV+
Sbjct: 327 YGSTESKQDAIVPPNSTVIYEVELVS 352
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 42 FDTTHEDNTVFS------FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP 95
++ ED TV S F + G + A A+++MK GE L KP+Y +G G P
Sbjct: 153 YEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPA 212
Query: 96 -----DVPPDATLIFEVELVACR 113
VPP+A+L+ ++ELV+ +
Sbjct: 213 AGEGGAVPPNASLVIDLELVSWK 235
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G+L + G+ FD++ + + F F+LG+G VI+ WD +++MK GE A T PE AY
Sbjct: 51 VHYTGTLLD-GKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAY 109
Query: 89 GSAGSPPDVPPDATLIFEVELVAC 112
G +GSPP +P +ATL F+VEL++
Sbjct: 110 GESGSPPTIPANATLQFDVELLSW 133
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TV G L + H++ F F+ + +VI D A+ +MK GEVA +T PEYA
Sbjct: 283 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYA 342
Query: 88 YGSAGSPPD--VPPDATLIFEVELVA 111
YGS S D VPP++T+I+EVELV+
Sbjct: 343 YGSTESKQDAIVPPNSTVIYEVELVS 368
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 42 FDTTHEDNTVFS------FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP 95
++ ED TV S F + G + A A+++MK GE L KP+Y +G G P
Sbjct: 169 YEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPA 228
Query: 96 -----DVPPDATLIFEVELVACR 113
VPP+A+L+ ++ELV+ +
Sbjct: 229 AGEGGAVPPNASLVIDLELVSWK 251
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 23 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 78
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 79 SPDYAYGATGHPGIIPPHATLVFDVELL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGVPGIIPPHATLVFDVELL 104
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR W + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ D++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ D++ + N F F LGK VIR W+ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR ++ + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 50 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 108
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 109 YGARGAGGVIPPNATLVFEVELL 131
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 34 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 92
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 93 YGARGAGGVIPPNATLVFEVELL 115
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 30 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLG 88
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 89 YGARGAGGVIPPNATLVFEVELL 111
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 126 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 185 YGARGAAGVIPPNATLVFEVELL 207
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L E G+ FD++ + N F F LGK VIR + + M VG+ AKLT
Sbjct: 21 TCV---VHYTGML-EDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTI 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+YAYG+ G P +PP ATL+F+VEL+
Sbjct: 77 SPDYAYGATGHPGIIPPHATLVFDVELL 104
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 126 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 185 YGARGAGGVIPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 126 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 185 YGARGAGGVIPPNATLVFEVELL 207
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVHY G L +G+VFD++ E N F F LG+G VI+ WDI + SM E + +Y
Sbjct: 40 TVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYG 99
Query: 88 YGSAGSPPDVPPDATLIFEVELVACR 113
YG G +P ++ LIFE+EL++ R
Sbjct: 100 YGEEGCGESIPGNSVLIFEIELISFR 125
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 126 SVHYTGWLTD-GQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 185 YGARGAGGVIPPNATLVFEVELL 207
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 23 TCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
TC+ VHY G L + G+ FD++ + N F F +GK VI+ ++ M +G+ AKLTC
Sbjct: 21 TCV---VHYTGML-QNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTC 76
Query: 83 KPEYAYGSAGSPPDVPPDATLIFEVELV 110
P+ AYG+ G P +PP+ATLIF+VEL+
Sbjct: 77 TPDVAYGATGHPGVIPPNATLIFDVELL 104
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVHY+G + G+ FD++ F F LG G VI+ WD + +M +GE A T + A
Sbjct: 47 TVHYDGRFPD-GKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLA 105
Query: 88 YGSAGSPPDVPPDATLIFEVELVAC 112
YG G PP +PP ATL+FEVEL+A
Sbjct: 106 YGERGYPPVIPPKATLVFEVELLAV 130
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ F ++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 126 SVHYTGWLTD-GQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 185 YGARGAGGVIPPNATLVFEVELL 207
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
T+HY G+L E G+ FD++ + + F +G G VI+ WD+ + + VGE A+LT YA
Sbjct: 29 TIHYTGTL-ENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYA 87
Query: 88 YGSAGSPPDVPPDATLIFEVELVACR 113
YG G P +PP++TL+F+VEL+
Sbjct: 88 YGPRGFPGLIPPNSTLVFDVELLKVN 113
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVHY G L TG+VFD++ + N F F L +G VI+ WDI + SM+ E + + Y
Sbjct: 41 TVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYG 100
Query: 88 YGSAGSPPDVPPDATLIFEVELVACR 113
YG G +P ++ L+FE+EL++ R
Sbjct: 101 YGDEGCGESIPGNSVLLFEIELLSFR 126
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVHY G L TG+VFD++ + N F F L +G VI+ WDI + SM+ E + + Y
Sbjct: 41 TVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYG 100
Query: 88 YGSAGSPPDVPPDATLIFEVELVACR 113
YG G +P ++ L+FE+EL++ R
Sbjct: 101 YGDEGCGESIPGNSVLLFEIELLSFR 126
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
+HY G L E G FD++ N F F LG G VI+ WD L M GE KL E Y
Sbjct: 14 MHYTGKL-EDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGY 72
Query: 89 GSAGSPPDVPPDATLIFEVELVACRPR 115
G G+PP +P ATL+FEVEL+ R
Sbjct: 73 GERGAPPKIPGGATLVFEVELLKIERR 99
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
+VHY G L + G+ FD++ + N F+F LG G VI+ WD ++ MKVG V +LT P+
Sbjct: 30 SVHYTGWLTD-GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 88
Query: 88 YGSAGSPPDVPPDATLIFEVELV 110
YG+ G+ +PP+ATL+FEVEL+
Sbjct: 89 YGAGGAGGVIPPNATLVFEVELL 111
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 29 VH--YEGSLAETGEVFDTT-------HEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 79
VH Y G+L + G VFDT ++ SF++G G VIR WD AL +M GE A+
Sbjct: 23 VHCWYTGTLQD-GTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR 81
Query: 80 LTCKPEYAYGSAGSP-PDVPPDATLIFEVELV 110
L +PE+AYG G P +PP+A L FEVELV
Sbjct: 82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 29 VH--YEGSLAETGEVFDTT-------HEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK 79
VH Y G+L + G VFDT ++ SF++G G VIR WD AL +M GE A+
Sbjct: 26 VHCWYTGTLPD-GTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR 84
Query: 80 LTCKPEYAYGSAGSP-PDVPPDATLIFEVELV 110
L +PE+AYG G P +PP+ LIFEVELV
Sbjct: 85 LEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 VHYEGSLAETGEVFDTTHEDNT--VFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY 86
VHYEG L + G +F +TH+ N F LG ++ WD L+ M VGE KL P
Sbjct: 37 VHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPAL 96
Query: 87 AYGSAGSPPDVPPDATLIFEVELVACR 113
YG G +PP++TLIF ++L+ R
Sbjct: 97 GYGKEGK-GKIPPESTLIFNIDLLEIR 122
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
V Y G L FD+ + T +LG+ + ++ L SM+ GE+A+ KP YAY
Sbjct: 49 VKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAY 108
Query: 89 GSAGSPPDVPPDATLIFEVELV 110
G+ G PP +PP+ T++FE+EL+
Sbjct: 109 GTLGCPPLIPPNTTVLFEIELL 130
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
V+Y+G+L + G+ FD ++ SF L VI W L+++K G KL PE AY
Sbjct: 144 VNYKGTLID-GKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAY 200
Query: 89 GSAGSPPDVPPDATLIFEVELVACRP 114
G AG P +PP++TL+F+VEL+ +P
Sbjct: 201 GKAGV-PGIPPNSTLVFDVELLDVKP 225
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
V+Y+G+L + G+ FD ++ SF L VI W L+++K G KL PE AY
Sbjct: 144 VNYKGTLID-GKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAY 200
Query: 89 GSAGSPPDVPPDATLIFEVELVACR 113
G AG P +PP++TL+F+VEL+ +
Sbjct: 201 GKAGVPG-IPPNSTLVFDVELLDVK 224
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVH + SL E G T ++ F LG VI+A D+++ M VGE A +T +Y
Sbjct: 35 TVHLQTSL-ENG----TRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYC 89
Query: 88 YGSAGSPPDVPPDATLIFEVEL 109
YG G P +PP A L EV L
Sbjct: 90 YGPQGRSPYIPPHAALCLEVTL 111
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 30 HYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRS------MKVGEVAKLTCK 83
HY G L E G+VFD+++ +F +G G VI+ WD + M G L
Sbjct: 36 HYVGKL-ENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIP 94
Query: 84 PEYAYGSAGSPPD-----VPPDATLIFEVELVA 111
PE AYG G+ +PP + L+F++E +
Sbjct: 95 PELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVH + SL E G T ++ F LG VI+A D+++ M VGE A +T +Y
Sbjct: 37 TVHLQTSL-ENG----TRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYC 91
Query: 88 YGSAGSPPDVPPDATLIFEVEL 109
YG G P +PP A L EV L
Sbjct: 92 YGPQGRSPYIPPHAALCLEVTL 113
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VHY G L + G VFD++ E +F VI+ W AL+ M+ G+ +L + AY
Sbjct: 61 VHYTGRLRD-GTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYDLAY 117
Query: 89 GSAGSPPDVPPDATLIFEVELVACRPRKGSSLGSVSEE 126
G G +PP + L F+VEL++ K G +EE
Sbjct: 118 GVTGGGGMIPPYSPLEFDVELISI---KDGGKGRTAEE 152
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVH + SL E G T ++ F LG VI+A D+++ M VGE A +T +Y
Sbjct: 67 TVHLQTSL-ENG----TRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYC 121
Query: 88 YGSAGS-PPDVPPDATLIFEVEL 109
YG GS P +PP A L EV L
Sbjct: 122 YGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TVH + SL E G T ++ F LG VI+A D+++ M VGE A +T +Y
Sbjct: 41 TVHLQTSL-ENG----TRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYC 95
Query: 88 YGSAGS-PPDVPPDATLIFEVEL 109
YG GS P +PP A L EV L
Sbjct: 96 YGPQGSRSPYIPPHAALCLEVTL 118
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TV Y G L + G VFD+T + +F++ + VI W AL+ M G ++ A
Sbjct: 52 TVEYTGRLID-GTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIYVPSGLA 108
Query: 88 YG--SAGSPPDVPPDATLIFEVELVACR 113
YG S G P + P+ TLIF++ L++ +
Sbjct: 109 YGPRSVGGP--IGPNETLIFKIHLISVK 134
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 28 TVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87
TV Y G L + G VFD+T + +F++ + VI W AL+ M G ++ A
Sbjct: 128 TVEYTGRLID-GTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIYVPSGLA 184
Query: 88 YG--SAGSPPDVPPDATLIFEVELVACR 113
YG S G P + P+ TLIF++ L++ +
Sbjct: 185 YGPRSVGGP--IGPNETLIFKIHLISVK 210
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
V Y G L + G++FD + + F L SVI W AL++M G +L + AY
Sbjct: 140 VRYVGRLPD-GKIFDQSTQPQW---FRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAY 193
Query: 89 GSAGSPPDVPPDATLIFEVELVAC 112
G+ G+ + P L+FE+EL+A
Sbjct: 194 GAEGAGDLIDPFTPLVFEIELIAV 217
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 22 CTCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKL 80
TC +HY + F+ T + LGK + I + SMK GE A +
Sbjct: 68 STCF---LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124
Query: 81 TCKPEYAYGSAG--SPPDVPPDATLIFEVELV 110
E AYG G S P+VPP A L++EVE++
Sbjct: 125 HVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 22 CTCLSGTVHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKL 80
TC +HY + F+ T + LGK + I + SMK GE A +
Sbjct: 68 STCF---LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124
Query: 81 TCKPEYAYGSAG--SPPDVPPDATLIFEVELV 110
E AYG G S P+VPP A L++EVE++
Sbjct: 125 HVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 48 DNTVFSFELGKGSVI---RAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPPDATL 103
D FE+G+G + + A++ M+ GE + + KP YA+GS G +PP+A L
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAEL 120
Query: 104 IFEVELVACRPRKGS 118
+E+ L + K S
Sbjct: 121 KYELHLKSFEKAKES 135
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 48 DNTVFSFELGKGSVI---RAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP-DVPPDATL 103
D FE+G+G + + A++ + GE + + KP YA+GS G +PP+A L
Sbjct: 61 DQRELRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAEL 120
Query: 104 IFEVELVACRPRKGS 118
+E+ L + K S
Sbjct: 121 KYELHLKSFEKAKES 135
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTV-------------FSFELGKGSVIRAWDIALRSMKVG 75
V Y G L E+G+VFDT+ E+ F +G+G +I+ ++ A+ M+VG
Sbjct: 10 VDYIGKL-ESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVG 68
Query: 76 EVAKLTCKPEYAYGS 90
+ + E AYG+
Sbjct: 69 DEKTVKIPAEKAYGN 83
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 21/78 (26%)
Query: 29 VHYEGSLAETGEVFDTTHED----------------NTVFSFELGKGSVIRAWDIALRSM 72
+ Y+G + G++FDTT+E+ +F+ G+G V+ D A+ M
Sbjct: 10 ISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFA---GEGQVLPGLDEAILEM 64
Query: 73 KVGEVAKLTCKPEYAYGS 90
VGE ++ PE A+G
Sbjct: 65 DVGEEREVVLPPEKAFGK 82
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 29 VHYEGSLAETGEVFDTTHED----NTVFSFEL---------GKGSVIRAWDIALRSMKVG 75
+ Y+G + G++FDTT+E+ +++ + G+G V+ D A+ M VG
Sbjct: 10 ISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVG 67
Query: 76 EVAKLTCKPEYAYGS 90
E ++ PE A+G
Sbjct: 68 EEREVVLPPEKAFGK 82
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 44 TTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP 94
TT+ D+ F + +G+ + + S+K + A CKP YG G P
Sbjct: 57 TTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLRYGLPGCP 107
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 55 ELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRP 114
ELG +++ A D+ LR+M + + AK + + AG+ ++ P A+ ++ R
Sbjct: 213 ELGVNALVEASDLVLRTMNIDDKAK-NLRFNWTIAKAGNVSNIIP-ASATLNADVRYARN 270
Query: 115 RKGSSLGSVSEERARLEEL 133
+ EERA+ ++L
Sbjct: 271 EDFDAAMKTLEERAQQKKL 289
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 29 VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88
VH+ L + G ++T + F LG S+ + L +KVG+ + +P+ A+
Sbjct: 33 VHFTLKL-DDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAF 91
Query: 89 G 89
G
Sbjct: 92 G 92
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 38 TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAK--LTCKPEYAYGSAGSPP 95
T E+ D+ + +LG + AW + SM VG +T KP GS G
Sbjct: 136 TAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDD 195
Query: 96 DVPPDATLIFEVELVACRPRKGSSL 120
A L+ E A R+G L
Sbjct: 196 AAGLGALLVLE----ALAKRRGLDL 216
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 26 SGTVHYEGSLAET-GEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTC 82
T HY ++ G V D + +GK + W+ + +M+ GE+A+ C
Sbjct: 32 KATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLC 89
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 52 FSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSP--PDVPPD 100
F +G +I + A+ ++GE ++ PE AYG S +VP D
Sbjct: 37 LEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQEVPRD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,678,159
Number of Sequences: 62578
Number of extensions: 137182
Number of successful extensions: 374
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 83
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)