Query 030262
Match_columns 180
No_of_seqs 227 out of 1549
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0549 FKBP-type peptidyl-pro 99.9 8.6E-25 1.9E-29 168.0 10.1 95 23-118 84-181 (188)
2 COG0545 FkpA FKBP-type peptidy 99.9 3.8E-25 8.2E-30 173.1 6.0 100 11-113 103-205 (205)
3 KOG0544 FKBP-type peptidyl-pro 99.9 8.8E-24 1.9E-28 145.9 8.5 91 22-113 15-108 (108)
4 TIGR03516 ppisom_GldI peptidyl 99.8 2.3E-21 4.9E-26 151.2 7.2 94 19-114 81-177 (177)
5 KOG0552 FKBP-type peptidyl-pro 99.8 3.3E-21 7.2E-26 153.9 6.1 103 9-113 120-226 (226)
6 PRK11570 peptidyl-prolyl cis-t 99.8 7.3E-21 1.6E-25 151.6 7.8 96 15-113 108-206 (206)
7 PF00254 FKBP_C: FKBP-type pep 99.8 3.9E-20 8.4E-25 129.5 9.6 87 23-110 4-94 (94)
8 PRK10902 FKBP-type peptidyl-pr 99.8 6.8E-19 1.5E-23 145.3 8.4 103 12-118 149-254 (269)
9 COG0544 Tig FKBP-type peptidyl 99.7 1.6E-16 3.5E-21 139.2 14.1 99 24-131 158-259 (441)
10 PRK15095 FKBP-type peptidyl-pr 99.7 2.2E-16 4.8E-21 120.9 8.6 67 24-91 5-74 (156)
11 TIGR00115 tig trigger factor. 99.6 2.8E-14 6.1E-19 124.2 17.0 137 23-170 146-287 (408)
12 PRK01490 tig trigger factor; P 99.6 2.9E-14 6.2E-19 125.1 16.0 138 22-170 156-297 (435)
13 COG1047 SlpA FKBP-type peptidy 99.6 2.1E-14 4.6E-19 110.7 9.3 66 24-90 3-71 (174)
14 KOG0543 FKBP-type peptidyl-pro 99.5 2E-13 4.3E-18 116.7 15.1 111 22-138 99-215 (397)
15 PRK10737 FKBP-type peptidyl-pr 99.5 1.9E-14 4E-19 113.6 7.8 63 27-91 9-71 (196)
16 KOG0543 FKBP-type peptidyl-pro 98.8 6.9E-09 1.5E-13 89.1 5.0 76 19-110 4-82 (397)
17 KOG0545 Aryl-hydrocarbon recep 97.8 2.7E-05 5.8E-10 63.8 5.0 112 25-136 28-184 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.3 0.00018 3.8E-09 56.1 3.1 56 54-113 1-56 (188)
19 PRK12450 foldase protein PrsA; 52.8 34 0.00073 28.8 5.3 38 52-89 193-233 (309)
20 PLN02316 synthase/transferase 50.0 1.6E+02 0.0035 29.4 9.9 33 50-82 346-382 (1036)
21 PRK05892 nucleoside diphosphat 43.2 64 0.0014 24.5 5.0 22 62-83 122-143 (158)
22 PF01272 GreA_GreB: Transcript 35.9 43 0.00093 21.9 2.7 24 61-84 42-65 (77)
23 COG4345 Uncharacterized protei 35.9 1.9E+02 0.0042 22.4 6.5 29 62-90 76-104 (181)
24 PRK04405 prsA peptidylprolyl i 35.9 1.7E+02 0.0036 24.6 6.9 23 56-78 196-218 (298)
25 PRK05753 nucleoside diphosphat 34.4 1.9E+02 0.0041 21.4 6.2 23 61-83 91-113 (137)
26 PRK02539 hypothetical protein; 33.5 1E+02 0.0022 21.2 4.2 40 129-168 11-50 (85)
27 PF09122 DUF1930: Domain of un 33.3 72 0.0016 20.7 3.2 22 63-84 35-56 (68)
28 PRK01326 prsA foldase protein 29.3 3.4E+02 0.0074 22.7 8.2 22 59-80 197-218 (310)
29 PF05979 DUF896: Bacterial pro 27.6 91 0.002 20.3 3.0 42 127-168 7-48 (65)
30 PRK01631 hypothetical protein; 27.3 1.7E+02 0.0036 19.7 4.3 42 128-169 9-50 (76)
31 PRK01546 hypothetical protein; 27.0 1.4E+02 0.0031 20.2 4.0 40 129-168 12-51 (79)
32 PRK00059 prsA peptidylprolyl i 25.6 3.6E+02 0.0077 22.6 7.3 45 59-120 251-295 (336)
33 PRK03095 prsA peptidylprolyl i 24.7 3.4E+02 0.0073 22.4 6.9 22 58-79 184-205 (287)
34 PRK02998 prsA peptidylprolyl i 23.8 4.2E+02 0.009 21.9 7.2 22 58-79 186-207 (283)
35 COG4224 Uncharacterized protei 23.4 1.9E+02 0.0042 19.3 4.0 41 129-169 11-51 (77)
36 TIGR02925 cis_trans_EpsD pepti 23.4 65 0.0014 25.5 2.2 29 58-88 189-217 (232)
37 PTZ00491 major vault protein; 21.6 1.9E+02 0.004 28.2 5.1 20 96-115 622-641 (850)
No 1
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.6e-25 Score=168.01 Aligned_cols=95 Identities=44% Similarity=0.789 Sum_probs=89.1
Q ss_pred Ccceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCCC
Q 030262 23 TCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 99 (180)
Q Consensus 23 ~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip~ 99 (180)
.++.|| +||++.+ .||+.|||||..+.|++|.||.+++|+||+.+|.+||+||++.+.|||+++||+.|.++.||+
T Consensus 84 kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~ 162 (188)
T KOG0549|consen 84 KAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPG 162 (188)
T ss_pred cccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCC
Confidence 456899 9999988 599999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCcEEEEEEEeeecCCCCC
Q 030262 100 DATLIFEVELVACRPRKGS 118 (180)
Q Consensus 100 ~~~lvf~Vel~~i~~~~~~ 118 (180)
+++|+|+|+|+++.+.+..
T Consensus 163 ~A~LiFdiELv~i~~~~~~ 181 (188)
T KOG0549|consen 163 DAVLIFDIELVKIERGPPE 181 (188)
T ss_pred CeeEEEEEEEEEeecCCCc
Confidence 9999999999999976543
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-25 Score=173.13 Aligned_cols=100 Identities=43% Similarity=0.707 Sum_probs=91.0
Q ss_pred HHHHHHhhccccCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCC
Q 030262 11 LLMLFLASALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYA 87 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~a 87 (180)
+++.++..+.+..+..|| +||+|++. ||++||||+.++.|+.|.|| .+|+||.++|.+|++|++|+++|||+++
T Consensus 103 l~y~~~~~G~G~~~~~~~~V~vhY~G~l~-~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP~~la 179 (205)
T COG0545 103 LQYKVLKAGDGAAPKKGDTVTVHYTGTLI-DGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIPPELA 179 (205)
T ss_pred cEEEEEeccCCCCCCCCCEEEEEEEEecC-CCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeCchhc
Confidence 334445557778888888 99999996 99999999999999999999 9999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEeeec
Q 030262 88 YGSAGSPPDVPPDATLIFEVELVACR 113 (180)
Q Consensus 88 yG~~g~~~~Ip~~~~lvf~Vel~~i~ 113 (180)
||..+.++.||||++|+|+|+|++|.
T Consensus 180 YG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 180 YGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred cCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 99999888899999999999999874
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.8e-24 Score=145.92 Aligned_cols=91 Identities=46% Similarity=0.890 Sum_probs=86.1
Q ss_pred cCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCC
Q 030262 22 CTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 98 (180)
Q Consensus 22 ~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip 98 (180)
.-++.|+ +||++++. ||+.||||.+.+.|+.|.+|.+.+|.||++++..|.+|+++.+.|+|+++||+.|.|..||
T Consensus 15 tfpK~Gqtvt~hYtg~L~-dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~Ip 93 (108)
T KOG0544|consen 15 TFPKKGQTVTVHYTGTLQ-DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIP 93 (108)
T ss_pred ccCCCCCEEEEEEEeEec-CCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeeccccccCCCCCCCccC
Confidence 4566777 99999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEeeec
Q 030262 99 PDATLIFEVELVACR 113 (180)
Q Consensus 99 ~~~~lvf~Vel~~i~ 113 (180)
||++|+|+|||++|.
T Consensus 94 pNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 94 PNATLVFDVELLKVN 108 (108)
T ss_pred CCcEEEEEEEEEecC
Confidence 999999999999873
No 4
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.84 E-value=2.3e-21 Score=151.19 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=86.7
Q ss_pred ccccCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCC
Q 030262 19 ALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP 95 (180)
Q Consensus 19 ~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~ 95 (180)
+.+..++.|| +||++++. ||++|++++.. .|+.|.+|.+.++|||+++|.+|++||+++|.+||+++||..+.+.
T Consensus 81 g~g~~p~~gd~V~v~Y~~~~~-dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~ 158 (177)
T TIGR03516 81 GEGTTPEFGDLVTFEYDIRAL-DGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN 158 (177)
T ss_pred CCCCcCCCCCEEEEEEEEEeC-CCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC
Confidence 5556778888 99999996 99999999864 6999999999999999999999999999999999999999999888
Q ss_pred CCCCCCcEEEEEEEeeecC
Q 030262 96 DVPPDATLIFEVELVACRP 114 (180)
Q Consensus 96 ~Ip~~~~lvf~Vel~~i~~ 114 (180)
.||||++|+|+|+|++|.+
T Consensus 159 ~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 159 KIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred CcCcCCcEEEEEEEEEecC
Confidence 9999999999999999863
No 5
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.3e-21 Score=153.95 Aligned_cols=103 Identities=37% Similarity=0.679 Sum_probs=92.8
Q ss_pred HHHHHHHHhhccccCcceee---EEEEEEEcCCCcEEecccCCCeeEE-EEeCCCCchHHHHHHHccCCCCcEEEEEeCC
Q 030262 9 FLLLMLFLASALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFS-FELGKGSVIRAWDIALRSMKVGEVAKLTCKP 84 (180)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~-~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~ 84 (180)
.++++.-+..+.+..+..|+ +||.|++..+|.+||+++.. .|+. |.+|.+.+|+||+.++.||++|.+++|+|||
T Consensus 120 ~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp 198 (226)
T KOG0552|consen 120 GGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPP 198 (226)
T ss_pred CCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeEEEeCc
Confidence 34455556668899999999 99999997689999999865 7888 9999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCcEEEEEEEeeec
Q 030262 85 EYAYGSAGSPPDVPPDATLIFEVELVACR 113 (180)
Q Consensus 85 ~~ayG~~g~~~~Ip~~~~lvf~Vel~~i~ 113 (180)
+++||..+.+ .||||++|+|+|+|+.|.
T Consensus 199 ~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 199 ELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred cccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 9999999985 899999999999999874
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=7.3e-21 Score=151.62 Aligned_cols=96 Identities=36% Similarity=0.525 Sum_probs=87.3
Q ss_pred HHhhccccCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCC
Q 030262 15 FLASALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 91 (180)
Q Consensus 15 ~~~~~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~ 91 (180)
++..+.+..+..+| +||++++. ||++|++|+..+.|+.|.++ .++|||+++|.+|++|+++.|.|||.++||..
T Consensus 108 vi~~G~G~~p~~~d~V~v~Y~g~l~-dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~ 184 (206)
T PRK11570 108 VLTQGEGAIPARTDRVRVHYTGKLI-DGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPHELAYGER 184 (206)
T ss_pred EEeCCCCCCCCCCCEEEEEEEEEEC-CCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCC
Confidence 34446667777888 99999996 99999999988899999997 79999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEeeec
Q 030262 92 GSPPDVPPDATLIFEVELVACR 113 (180)
Q Consensus 92 g~~~~Ip~~~~lvf~Vel~~i~ 113 (180)
+.++.|||+++|+|+|+|++|.
T Consensus 185 g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 185 GAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCCCCcCCCCeEEEEEEEEEEC
Confidence 9888999999999999999983
No 7
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.83 E-value=3.9e-20 Score=129.52 Aligned_cols=87 Identities=46% Similarity=0.852 Sum_probs=80.9
Q ss_pred Ccceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCC-CCCCC
Q 030262 23 TCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGS-PPDVP 98 (180)
Q Consensus 23 ~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~-~~~Ip 98 (180)
.++.|| +||++++. +|++|++++..+.|+.|.+|.+.++|||+++|.+|++||++.|.||++++||..+. +..||
T Consensus 4 ~~~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip 82 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIP 82 (94)
T ss_dssp SBSTTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBT
T ss_pred cCCCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcC
Confidence 466777 99999996 99999999878899999999999999999999999999999999999999999887 55799
Q ss_pred CCCcEEEEEEEe
Q 030262 99 PDATLIFEVELV 110 (180)
Q Consensus 99 ~~~~lvf~Vel~ 110 (180)
|+++|+|+|+|+
T Consensus 83 ~~~~l~f~Iell 94 (94)
T PF00254_consen 83 PNSTLVFEIELL 94 (94)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCeEEEEEEEC
Confidence 999999999985
No 8
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.77 E-value=6.8e-19 Score=145.27 Aligned_cols=103 Identities=34% Similarity=0.589 Sum_probs=89.9
Q ss_pred HHHHHhhccccCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCc
Q 030262 12 LMLFLASALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88 (180)
Q Consensus 12 ~~~~~~~~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ay 88 (180)
++.++..|.+..+..|| |||++++. ||++|++++..+.|+.|.++ .++|||+++|.+|++|+++.|+||++++|
T Consensus 149 ~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laY 225 (269)
T PRK10902 149 LYKVEKEGTGEAPKDSDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAY 225 (269)
T ss_pred EEEEEeCCCCCCCCCCCEEEEEEEEEeC-CCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEECchhhC
Confidence 33344557777888888 99999985 99999999988889999886 69999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEeeecCCCCC
Q 030262 89 GSAGSPPDVPPDATLIFEVELVACRPRKGS 118 (180)
Q Consensus 89 G~~g~~~~Ip~~~~lvf~Vel~~i~~~~~~ 118 (180)
|..+.+ .||||++|+|+|+|++|.+++..
T Consensus 226 G~~g~~-gIppns~LvfeVeLl~V~~~~~~ 254 (269)
T PRK10902 226 GKAGVP-GIPANSTLVFDVELLDVKPAPKA 254 (269)
T ss_pred CCCCCC-CCCCCCcEEEEEEEEEeccCccc
Confidence 999864 69999999999999999865433
No 9
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-16 Score=139.17 Aligned_cols=99 Identities=25% Similarity=0.393 Sum_probs=92.2
Q ss_pred cceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCCCC
Q 030262 24 CLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPD 100 (180)
Q Consensus 24 ~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip~~ 100 (180)
++.|| |+|.|+. ||..|++ +....+.+.||++++||||+++|.||++|+...|.|.+|..|+...+ +|
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~feg--g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEG--GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AG 228 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccC--ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CC
Confidence 78899 9999998 9999999 45578999999999999999999999999999999999999999999 99
Q ss_pred CcEEEEEEEeeecCCCCCCCCChHHHHHhHH
Q 030262 101 ATLIFEVELVACRPRKGSSLGSVSEERARLE 131 (180)
Q Consensus 101 ~~lvf~Vel~~i~~~~~~~~~~~~~~~~~~~ 131 (180)
++..|.|+|++|..+..++.++.++.....+
T Consensus 229 K~a~F~V~vkeVk~~elpEldDEfAk~~~~~ 259 (441)
T COG0544 229 KEATFKVKVKEVKKRELPELDDEFAKKLGEE 259 (441)
T ss_pred CceEEEEEEEEEeecCCCCCCHHHHHhcCcc
Confidence 9999999999999999999999887777555
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.67 E-value=2.2e-16 Score=120.85 Aligned_cols=67 Identities=28% Similarity=0.489 Sum_probs=61.5
Q ss_pred cceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCC
Q 030262 24 CLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 91 (180)
Q Consensus 24 ~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~ 91 (180)
.+.|+ +||++++. ||++|++|+..+.|+.|.+|.+.++|||+++|.+|++|+++.|.|||+++||..
T Consensus 5 i~~~~~V~v~Y~~~~~-dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLD-DGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred cCCCCEEEEEEEEEeC-CCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 34555 99999994 899999998777899999999999999999999999999999999999999983
No 11
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.62 E-value=2.8e-14 Score=124.16 Aligned_cols=137 Identities=23% Similarity=0.358 Sum_probs=105.0
Q ss_pred Ccceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCCC
Q 030262 23 TCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPP 99 (180)
Q Consensus 23 ~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip~ 99 (180)
+++.|| +||+++. ||+.|+++. ..++.|.+|.+.++|||+++|.||++|++++|.+|++.+|+..++ +
T Consensus 146 ~~~~gD~V~v~~~~~~--dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI--DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred ccCCCCEEEEEEEEEE--CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 567888 9999988 899999864 468999999999999999999999999999999999999998887 8
Q ss_pred CCcEEEEEEEeeecCCCCCCCCChHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030262 100 DATLIFEVELVACRPRKGSSLGSVSEERARL--EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 170 (180)
Q Consensus 100 ~~~lvf~Vel~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (180)
|+++.|+|+|.+|.....+++++........ ..+.+.+ ...++..+++....+....+..+..+|+++.
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~~~~~~t~~elr--~~ik~~l~~~~~~~~~~~~~~~i~~~l~~~~ 287 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKELGEEFETLEELK--ADIRKNLEREKKERAKNKLKEQLLDKLVENN 287 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhcCCccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998888888776655532 2233222 2233334444444555555555555555554
No 12
>PRK01490 tig trigger factor; Provisional
Probab=99.61 E-value=2.9e-14 Score=125.07 Aligned_cols=138 Identities=22% Similarity=0.332 Sum_probs=103.9
Q ss_pred cCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCC
Q 030262 22 CTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVP 98 (180)
Q Consensus 22 ~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip 98 (180)
.+++.|| +||+++. ||++|+++. ..++.|.+|.+.++|||+++|.||++|++++|.++++.+|+...+
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 3578899 9999998 899999854 468999999999999999999999999999999999999998887
Q ss_pred CCCcEEEEEEEeeecCCCCCCCCChHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030262 99 PDATLIFEVELVACRPRKGSSLGSVSEERARL-EELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAKK 170 (180)
Q Consensus 99 ~~~~lvf~Vel~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (180)
+|+++.|.|+|.+|+....+++++..+..... ..+.+.+ ...+...+++....+....+..+-.+|+++.
T Consensus 227 agk~~~f~v~v~~V~~~~~pel~Defak~~~~~~tleelk--~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~ 297 (435)
T PRK01490 227 AGKEATFKVTVKEVKEKELPELDDEFAKKLGEFETLEELK--ADIRKNLEREKKEAQRAKVKEAVLDALVENA 297 (435)
T ss_pred CCCeEEEEEEEEEeccCCCCCCCHHHHHhcCCcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999998888888776654432 2222222 2233333344444444455555555555443
No 13
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.1e-14 Score=110.70 Aligned_cols=66 Identities=35% Similarity=0.531 Sum_probs=60.7
Q ss_pred cceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCC
Q 030262 24 CLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGS 90 (180)
Q Consensus 24 ~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~ 90 (180)
.++|| +||++++. ||++||+|.....|+.|.+|.++++||||++|.||.+|++.+|.|||+.|||.
T Consensus 3 i~k~~~V~i~Y~~~~~-dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe 71 (174)
T COG1047 3 IEKGDVVSLHYTLKVE-DGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGE 71 (174)
T ss_pred ccCCCEEEEEEEEEec-CCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCC
Confidence 34566 99999995 79999999774589999999999999999999999999999999999999998
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2e-13 Score=116.71 Aligned_cols=111 Identities=44% Similarity=0.663 Sum_probs=88.6
Q ss_pred cCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCC-CCchHHHHHHHccCCCCcEEEEEeCCCCCcCCC-CCCCC
Q 030262 22 CTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGK-GSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA-GSPPD 96 (180)
Q Consensus 22 ~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~-~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~-g~~~~ 96 (180)
..|..|. +||.|++ .|.+|+++. .++.|.+|+ ..++.||+.+|..|++||.+.|+|+|.++||+. +.++.
T Consensus 99 ~~P~~g~~V~v~~~G~~--~~~~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~ 173 (397)
T KOG0543|consen 99 SRPNKGAVVKVHLEGEL--EDGVFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPL 173 (397)
T ss_pred CCCCCCcEEEEEEEEEE--CCcceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCC
Confidence 4444455 9999999 445888642 458888887 479999999999999999999999999999954 45789
Q ss_pred CCCCCcEEEEEEEeeec-CCCCCCCCChHHHHHhHHHHHHHHH
Q 030262 97 VPPDATLIFEVELVACR-PRKGSSLGSVSEERARLEELKRQRE 138 (180)
Q Consensus 97 Ip~~~~lvf~Vel~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (180)
|||+++|.|+|+|+++. .....|.+. .+++...+..++++.
T Consensus 174 IPPnA~l~yEVeL~~f~~~~~~s~~~~-~~e~l~~A~~~ke~G 215 (397)
T KOG0543|consen 174 IPPNATLLYEVELLDFELKEDESWKMF-AEERLEAADRKKERG 215 (397)
T ss_pred CCCCceEEEEEEEEeeecCcccccccc-hHHHHHHHHHHHHhh
Confidence 99999999999999999 666666655 446777777666653
No 15
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.54 E-value=1.9e-14 Score=113.64 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=58.4
Q ss_pred eeEEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCC
Q 030262 27 GTVHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSA 91 (180)
Q Consensus 27 Gdi~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~ 91 (180)
..++|++++. ||++|++|+. ..|+.|.+|.++++|+||++|.+|.+|++++|.|||+.|||..
T Consensus 9 V~l~Y~l~~~-dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 9 VSLAYQVRTE-DGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred EEEEEEEEeC-CCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 3399999994 8999999976 4899999999999999999999999999999999999999983
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.9e-09 Score=89.09 Aligned_cols=76 Identities=50% Similarity=0.943 Sum_probs=68.5
Q ss_pred ccccCcceee---EEEEEEEcCCCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCC
Q 030262 19 ALICTCLSGT---VHYEGSLAETGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPP 95 (180)
Q Consensus 19 ~~~~~~~~Gd---i~y~~~~~~dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~ 95 (180)
....+|..|| +||++++. ||+.||||.+ +.|+.|.+|.+.+|.+|..++..|+. |+.+.|+
T Consensus 4 ~g~~~p~~g~~v~~hytg~l~-dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~pp 67 (397)
T KOG0543|consen 4 TGTETPMTGDKVEVHYTGTLL-DGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSPP 67 (397)
T ss_pred CCccCCCCCceeEEEEeEEec-CCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCCCC
Confidence 4456778888 99999996 9999999988 78999999999999999999999998 7777889
Q ss_pred CCCCCCcEEEEEEEe
Q 030262 96 DVPPDATLIFEVELV 110 (180)
Q Consensus 96 ~Ip~~~~lvf~Vel~ 110 (180)
.||++.+|.|+|+|.
T Consensus 68 ~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 68 KIPSNATLLFEVELL 82 (397)
T ss_pred CCCCCcceeeeeccc
Confidence 999999999999974
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.7e-05 Score=63.78 Aligned_cols=112 Identities=22% Similarity=0.341 Sum_probs=80.3
Q ss_pred ceee---EEEEEEEcC-CCcEEecccCCCeeEEEEeCCCCchHHHHHHHccCCCCcEEEEEeCCCC--------------
Q 030262 25 LSGT---VHYEGSLAE-TGEVFDTTHEDNTVFSFELGKGSVIRAWDIALRSMKVGEVAKLTCKPEY-------------- 86 (180)
Q Consensus 25 ~~Gd---i~y~~~~~~-dG~~~dst~~~~~~~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~-------------- 86 (180)
..|+ |||...... .++++|+|..-++|+.+++|...-+|-||..|..|.++|...|.|..-.
T Consensus 28 ~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdi 107 (329)
T KOG0545|consen 28 IDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDI 107 (329)
T ss_pred cCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHH
Confidence 3555 999987753 3679999988899999999999999999999999999999888765311
Q ss_pred CcCC-----------------------CCCCCCCCCCCcEEEEEEEeeecCC----CCCCCCChHHHHHhHHHHHHH
Q 030262 87 AYGS-----------------------AGSPPDVPPDATLIFEVELVACRPR----KGSSLGSVSEERARLEELKRQ 136 (180)
Q Consensus 87 ayG~-----------------------~g~~~~Ip~~~~lvf~Vel~~i~~~----~~~~~~~~~~~~~~~~~~~~~ 136 (180)
+-|. .++......-++|+|.++|..|..| .++|..+.++.-..+.-++.+
T Consensus 108 a~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~ 184 (329)
T KOG0545|consen 108 AQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQE 184 (329)
T ss_pred hcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHh
Confidence 0011 1111112245799999999999976 567777765554455555544
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00018 Score=56.08 Aligned_cols=56 Identities=34% Similarity=0.472 Sum_probs=43.1
Q ss_pred EEeCCCCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCCCCCcEEEEEEEeeec
Q 030262 54 FELGKGSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACR 113 (180)
Q Consensus 54 ~~lG~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip~~~~lvf~Vel~~i~ 113 (180)
+++|.+.+||+++.+|.||+.|+++.+.+||+++||..+.. .-..++|.+.+..+-
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLF 56 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehh
Confidence 35788899999999999999999999999999999965431 112345666655543
No 19
>PRK12450 foldase protein PrsA; Reviewed
Probab=52.80 E-value=34 Score=28.84 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=26.7
Q ss_pred EEEEeCCCCchHHHHHHHccCCCCcEEEEE-e--CCCCCcC
Q 030262 52 FSFELGKGSVIRAWDIALRSMKVGEVAKLT-C--KPEYAYG 89 (180)
Q Consensus 52 ~~~~lG~~~~i~g~e~~L~gmk~Ge~~~v~-v--p~~~ayG 89 (180)
..|.-|.+.+.|.|++++..|++|+...+. + |....||
T Consensus 193 ~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~G 233 (309)
T PRK12450 193 YTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRT 233 (309)
T ss_pred ccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCc
Confidence 334334557999999999999999986544 2 5444444
No 20
>PLN02316 synthase/transferase
Probab=49.95 E-value=1.6e+02 Score=29.37 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=17.9
Q ss_pred eeEEEEeCCCCchHHHHHHHccCC----CCcEEEEEe
Q 030262 50 TVFSFELGKGSVIRAWDIALRSMK----VGEVAKLTC 82 (180)
Q Consensus 50 ~~~~~~lG~~~~i~g~e~~L~gmk----~Ge~~~v~v 82 (180)
..+.+..|-+.+.-+.......|+ .|+.+...|
T Consensus 346 ~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v 382 (1036)
T PLN02316 346 TEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEV 382 (1036)
T ss_pred CcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEE
Confidence 456677776666655433333333 566665544
No 21
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=43.20 E-value=64 Score=24.55 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.0
Q ss_pred hHHHHHHHccCCCCcEEEEEeC
Q 030262 62 IRAWDIALRSMKVGEVAKLTCK 83 (180)
Q Consensus 62 i~g~e~~L~gmk~Ge~~~v~vp 83 (180)
..-+-.+|+|.++||.+.|..|
T Consensus 122 ~SPlG~ALlGk~vGD~v~v~~p 143 (158)
T PRK05892 122 DSPLGQALAGHQAGDTVTYSTP 143 (158)
T ss_pred CCHHHHHHhCCCCCCEEEEEcC
Confidence 3468899999999999998876
No 22
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=35.88 E-value=43 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.3
Q ss_pred chHHHHHHHccCCCCcEEEEEeCC
Q 030262 61 VIRAWDIALRSMKVGEVAKLTCKP 84 (180)
Q Consensus 61 ~i~g~e~~L~gmk~Ge~~~v~vp~ 84 (180)
...-+-.+|+|.++||.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345688999999999999999863
No 23
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.88 E-value=1.9e+02 Score=22.43 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=20.5
Q ss_pred hHHHHHHHccCCCCcEEEEEeCCCCCcCC
Q 030262 62 IRAWDIALRSMKVGEVAKLTCKPEYAYGS 90 (180)
Q Consensus 62 i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~ 90 (180)
-+-+-+-+..|++|..-.+.|..+..|-.
T Consensus 76 nk~i~EkliemgVgk~DVvrIsv~~~~~d 104 (181)
T COG4345 76 NKRIYEKLIEMGVGKLDVVRISVDADIED 104 (181)
T ss_pred hHHHHHHHHHhccCccceEEEEEEEEecC
Confidence 34556666679999987777777666643
No 24
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=35.86 E-value=1.7e+02 Score=24.56 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.4
Q ss_pred eCCCCchHHHHHHHccCCCCcEE
Q 030262 56 LGKGSVIRAWDIALRSMKVGEVA 78 (180)
Q Consensus 56 lG~~~~i~g~e~~L~gmk~Ge~~ 78 (180)
.+.+.+.|.|++++..|++|+..
T Consensus 196 ~~~~~l~~~f~~a~~~L~~Geis 218 (298)
T PRK04405 196 STDTTLDSTFKTAAFKLKNGEYT 218 (298)
T ss_pred cCCCCCCHHHHHHHHcCCCCCcc
Confidence 34567899999999999999973
No 25
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=34.42 E-value=1.9e+02 Score=21.36 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.8
Q ss_pred chHHHHHHHccCCCCcEEEEEeC
Q 030262 61 VIRAWDIALRSMKVGEVAKLTCK 83 (180)
Q Consensus 61 ~i~g~e~~L~gmk~Ge~~~v~vp 83 (180)
+..-+-.||.|.++||.+.+..|
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p 113 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLP 113 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECC
Confidence 45678899999999999998865
No 26
>PRK02539 hypothetical protein; Provisional
Probab=33.53 E-value=1e+02 Score=21.20 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030262 129 RLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEA 168 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (180)
.++.+.+.........++.+.+.+++.+..|..++.+|.+
T Consensus 11 eLakK~K~~gLT~eEk~Eq~~LR~eYl~~fR~~~~~~L~~ 50 (85)
T PRK02539 11 ELAKKKKTEGLTGEEKVEQAKLREEYIEGYRRSVRHHIEG 50 (85)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666667777778888899999999999988765
No 27
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=33.31 E-value=72 Score=20.68 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHccCCCCcEEEEEeCC
Q 030262 63 RAWDIALRSMKVGEVAKLTCKP 84 (180)
Q Consensus 63 ~g~e~~L~gmk~Ge~~~v~vp~ 84 (180)
+.+..++..|..||++.|+..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 5688999999999999998753
No 28
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=29.26 E-value=3.4e+02 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=18.5
Q ss_pred CCchHHHHHHHccCCCCcEEEE
Q 030262 59 GSVIRAWDIALRSMKVGEVAKL 80 (180)
Q Consensus 59 ~~~i~g~e~~L~gmk~Ge~~~v 80 (180)
+.+.+.|.+++..|++|+...+
T Consensus 197 ~~l~~~~~~a~~~Lk~GevS~p 218 (310)
T PRK01326 197 TNVPEQVKKAAFALDEDGVSDV 218 (310)
T ss_pred CcccHHHHHHHHcCCCCCcCCc
Confidence 4577799999999999997654
No 29
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=27.55 E-value=91 Score=20.28 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030262 127 RARLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEA 168 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (180)
...++.+.+.........++.+.+.+++.+..|..++.+|.+
T Consensus 7 INeLa~K~K~~gLT~eE~~Eq~~LR~eYl~~fR~~~~~~L~~ 48 (65)
T PF05979_consen 7 INELAKKSKEEGLTEEEKAEQAELRQEYLQNFRGNFRSQLEN 48 (65)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHTTHHHHHHCSST
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666777777788888888899999999999887643
No 30
>PRK01631 hypothetical protein; Provisional
Probab=27.27 E-value=1.7e+02 Score=19.68 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030262 128 ARLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAK 169 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (180)
..++...+.........++.+.+.+++.+..|..++.+|.+=
T Consensus 9 NeLakK~K~~gLT~eE~~Eq~~LR~eYl~~fR~~~~~~L~~i 50 (76)
T PRK01631 9 NELSKKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNT 50 (76)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344555566666677777788888999999999998887653
No 31
>PRK01546 hypothetical protein; Provisional
Probab=27.04 E-value=1.4e+02 Score=20.18 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030262 129 RLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEA 168 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (180)
.++...+..........+.+.+.+++.+..|..++.+|.+
T Consensus 12 eLakK~K~~gLT~eEk~Eq~~LR~eYl~~fR~~~~~~L~~ 51 (79)
T PRK01546 12 FLAKKAKAEGLTEEEQRERQSLREQYLKGFRQNMLNELKG 51 (79)
T ss_pred HHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555666667777778888899999999999988865
No 32
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=25.55 E-value=3.6e+02 Score=22.55 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCchHHHHHHHccCCCCcEEEEEeCCCCCcCCCCCCCCCCCCCcEEEEEEEeeecCCCCCCC
Q 030262 59 GSVIRAWDIALRSMKVGEVAKLTCKPEYAYGSAGSPPDVPPDATLIFEVELVACRPRKGSSL 120 (180)
Q Consensus 59 ~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ayG~~g~~~~Ip~~~~lvf~Vel~~i~~~~~~~~ 120 (180)
+.+.|.|..++..|++|+..... ...+| .+.+.|.++.+.....+
T Consensus 251 ~~l~~~~~~a~~~l~~Gevs~pi---~~~~G--------------~~i~~v~~~~~~~~~~~ 295 (336)
T PRK00059 251 SGYDKEFMDGAKALKEGEISAPV---KTQFG--------------YHIIKAIKKKEYPVKPF 295 (336)
T ss_pred CccCHHHHHHHHcCCCCCcCccE---ecCCe--------------EEEEEEEeeccCCCCCH
Confidence 56789999999999999975322 22222 25567777776544433
No 33
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=24.72 E-value=3.4e+02 Score=22.45 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHccCCCCcEEE
Q 030262 58 KGSVIRAWDIALRSMKVGEVAK 79 (180)
Q Consensus 58 ~~~~i~g~e~~L~gmk~Ge~~~ 79 (180)
.+.+.|.|+.++..|++|+...
T Consensus 184 ~~~L~~~~~~al~~L~~GevS~ 205 (287)
T PRK03095 184 AGKMVKEFEDAAYKLKKDEVSE 205 (287)
T ss_pred cccccHHHHHHHHhCCCCCcCC
Confidence 4578999999999999999654
No 34
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=23.85 E-value=4.2e+02 Score=21.86 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHccCCCCcEEE
Q 030262 58 KGSVIRAWDIALRSMKVGEVAK 79 (180)
Q Consensus 58 ~~~~i~g~e~~L~gmk~Ge~~~ 79 (180)
.+.+.|.|.+++..|++|+...
T Consensus 186 ~~~l~~~~~~a~~~Lk~GevS~ 207 (283)
T PRK02998 186 PGQTVKEFEEAAYKLDAGQVSE 207 (283)
T ss_pred CCcchHHHHHHHHcCCCCCcCC
Confidence 3568899999999999999654
No 35
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.37 E-value=1.9e+02 Score=19.32 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030262 129 RLEELKRQRELAAAVKEEEKKKREEAKAAAAARIQAKMEAK 169 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (180)
.++.+++..........+...+.+++....|..++.++-+=
T Consensus 11 eLAkk~K~~gLTeeEk~eQ~~LR~eYl~~fr~~vk~~l~~i 51 (77)
T COG4224 11 ELAKKKKEEGLTEEEKKEQAKLRREYLESFRGQVKNQLENI 51 (77)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Confidence 34445555555666666677788889999999999887653
No 36
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=23.36 E-value=65 Score=25.46 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=21.8
Q ss_pred CCCchHHHHHHHccCCCCcEEEEEeCCCCCc
Q 030262 58 KGSVIRAWDIALRSMKVGEVAKLTCKPEYAY 88 (180)
Q Consensus 58 ~~~~i~g~e~~L~gmk~Ge~~~v~vp~~~ay 88 (180)
.+.+.|.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 456889999999999999975 3 5444333
No 37
>PTZ00491 major vault protein; Provisional
Probab=21.62 E-value=1.9e+02 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCCCCCcEEEEEEEeeecCC
Q 030262 96 DVPPDATLIFEVELVACRPR 115 (180)
Q Consensus 96 ~Ip~~~~lvf~Vel~~i~~~ 115 (180)
.+|+|.-++..|++.+|++.
T Consensus 622 ~F~~N~lvit~VDvqsvEpv 641 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPV 641 (850)
T ss_pred EEccCCeEEEEEeeeeeeec
Confidence 57899999999999999973
Done!