BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030263
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD V +SEA +GK+N+DYC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ + +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L + + P+ TIF + AL+L E +RK+ +TD
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVL----VQALELADEARRKRQFTDV 308
Query: 61 ANFTLCYGVCQIGVIGQ 77
FTL +CQ G+ GQ
Sbjct: 309 NRFTLRCMICQKGLTGQ 325
>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1
PE=3 SV=1
Length = 325
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA V SD +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y EIAA+DI T
Sbjct: 158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217
Query: 140 CDLYGQ 145
YG+
Sbjct: 218 MYCYGE 223
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
LIYDG+HYDAL+I + PE+FD T F V ++ + L++++ + +TDTA
Sbjct: 233 LIYDGIHYDALSICLTKNGPEDFDITRFSVDDKDSLAKMK----VLIEKEFKAGKFTDTA 288
Query: 62 NFTLCYGVCQIGVIGQKAIAATVASDT 88
F+L C + G+K AA AS T
Sbjct: 289 KFSLICLNCNKTLKGEKE-AAIHASTT 314
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura
pseudoobscura GN=GA18292 PE=3 SV=1
Length = 358
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 17/110 (15%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA V++DT ++++A +GKSN DYC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 197 IAQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 256
Query: 140 CDLYGQ--------ISAFEGAP-----VEFDQSSVPVRKDRTIGPAEELA 176
+ +G+ F+G +E Q+SVP TI P EE+
Sbjct: 257 INRFGEDKNFGLRVFLLFDGIHYDPLYMETQQNSVPA----TIFPVEEMG 302
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
L++DG+HYD L + E TIFPV++ AE +A E + + +T+
Sbjct: 272 LLFDGIHYDPLYM---ETQQNSVPATIFPVEEMGVYQQAEQIA----NEAKSSRQFTNVD 324
Query: 62 NFTLCYGVCQIGVIGQ 77
FTL C + ++GQ
Sbjct: 325 KFTLRCMDCDVMLVGQ 340
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+NQ+YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L + + P+ TIF + AL+L E +R++ +TD
Sbjct: 260 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVL----VQALELADEARRRRQFTDV 313
Query: 61 ANFTLCYGVCQIGVIGQ 77
FTL VCQ G+ GQ
Sbjct: 314 NRFTLRCMVCQKGLTGQ 330
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ + +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L + + P+ TIF + AL+L E +RK+ +TD
Sbjct: 255 LLIYDGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVL----VQALELADEARRKRQFTDV 308
Query: 61 ANFTLCYGVCQIGVIGQ 77
FTL +CQ G+ GQ
Sbjct: 309 NRFTLRCMLCQKGLTGQ 325
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 22 EEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIG----- 76
EE ++ PVQ T GP+ ++ + ++R ++ FT V + GV
Sbjct: 77 EEKNKPKPPVQPTVTKGPSFEVTPVV---ERRVVPADNSCLFTSVNYVMEGGVYDPACAS 133
Query: 77 --QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYD 134
+ IA VASD +SEA +GK+N++YC+WI+ + WGGAIE+SIL+ +Y EI D
Sbjct: 134 EMRGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVD 193
Query: 135 IQTTRCDLYGQISAF 149
QT R D +G+ + +
Sbjct: 194 TQTVRVDRFGEDAGY 208
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 1 MLIYDGLHYDAL-AISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTD 59
+LIYDG+HYD L + P P QT+F + A L+L E +RK+ +TD
Sbjct: 213 LLIYDGIHYDPLQKVLPGSDVPA---QTVFSTVDDVILAQA----LELADEARRKRQFTD 265
Query: 60 TANFTLCYGVCQIGVIGQK 78
F L VCQ G++GQK
Sbjct: 266 VNRFALRCMVCQTGLVGQK 284
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV+ ++ IA VASD +SEA +GK+N++YC WI+ + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L + + P+ TIF + AL+L E ++K+ +TD
Sbjct: 260 LLIYDGIHYDPLHLVFPD--PDTPPLTIFSSYDDIVL----VQALELADEARKKRQFTDV 313
Query: 61 ANFTLCYGVCQIGVIGQ 77
FTL VCQ G+ GQ
Sbjct: 314 NRFTLRCMVCQKGLTGQ 330
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV + IA VASD + +A +GKSN++YCSWI+ + WGG
Sbjct: 118 FTSIYYVVEGGVYDPACALEMRSLIAEIVASDQSAYCDAVLGKSNEEYCSWIRREDTWGG 177
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ S +
Sbjct: 178 AIEVSILSKFYQCEICVVDTQTVRIDRFGEDSGY 211
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
+LIYDG+HYD L F P+ T+F T A A++L + ++K+ +TD
Sbjct: 216 LLIYDGIHYDPLQ-RQFPD-PDMPPMTVFST----TDDEALVQAMELADDARKKRQFTDV 269
Query: 61 ANFTLCYGVCQIGVIGQKA 79
F L CQ G+ GQ A
Sbjct: 270 NQFALRCMACQKGLTGQSA 288
>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1
Length = 302
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
FT Y V + GV + IA VASD + EA +GK+N++YC WI+ E WGG
Sbjct: 116 FTSVYYVVEGGVYDPGCAPEMRSLIAQIVASDPEAYCEAVLGKTNREYCEWIRREETWGG 175
Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
AIE+SIL+ +Y EI D QT R D +G+ + +
Sbjct: 176 AIEVSILSKFYQCEICVVDTQTVRIDRFGEDAGY 209
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 1 MLIYDGLHYDALAIS-PFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTD 59
+LIYDG+HYD L P P QTIF + A L+L E +RK+ +TD
Sbjct: 214 LLIYDGIHYDPLERKIPDSDVPP---QTIFSTTDDVVLAQA----LELADEARRKRQFTD 266
Query: 60 TANFTLCYGVCQIGVIGQ 77
FTL VCQ G+ GQ
Sbjct: 267 VNRFTLRCMVCQKGLTGQ 284
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603
PE=2 SV=1
Length = 347
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
IA VA+D +++A +GKSN +YC+WIQ + WGGAIE+SIL++YYG EI DIQ
Sbjct: 186 IAQEVAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 245
Query: 140 CDLYGQISAF 149
+ +G+ F
Sbjct: 246 INRFGEDKNF 255
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
L++DG+HYD L + E +P TIFPV++ AE LA E Q + YT+
Sbjct: 261 LLFDGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAEQLA----NEAQSSRQYTNVD 313
Query: 62 NFTLCYGVCQIGVIGQ 77
FTL C + ++GQ
Sbjct: 314 KFTLRCMQCDVRLVGQ 329
>sp|O13974|OTU1_SCHPO Putative ubiquitin thioesterase otu1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=otu1 PE=1 SV=1
Length = 329
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 77 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
++ +A V S+ +S A +GK + +Y SWI+ WGG IELSIL+ ++G EI + D++
Sbjct: 163 REIVANQVLSNPDIYSTAILGKPSIEYASWIRKETSWGGYIELSILSSHFGVEICSVDVK 222
Query: 137 TTRCDLYG 144
T R D Y
Sbjct: 223 TGRVDSYN 230
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTA 61
++Y G+HYD A++ + D +F TI P L+K YTDTA
Sbjct: 241 IVYSGIHYDLAALAAVLWD-TDVDVVLFDASD-VTITPYVQQLASLLKNMHY---YTDTA 295
Query: 62 NFTLCYGVCQIGVIGQK 78
+F++ +C G++G+K
Sbjct: 296 SFSIRCTICGTGLVGEK 312
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 77 QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
++ ++ V ++ VK ++A + K N+DY WI E WGGAIE+ I++D I DI
Sbjct: 139 REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 198
Query: 137 TTRCDLYGQ 145
+ + + +
Sbjct: 199 AVKIEKFNE 207
>sp|Q1IZI9|RRF_DEIGD Ribosome-recycling factor OS=Deinococcus geothermalis (strain DSM
11300) GN=frr PE=3 SV=1
Length = 183
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 9 YDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYG 68
+D A++P E A + D + P KG TI ++L ++ E++RK + N+
Sbjct: 72 WDRGALNPIEKAIRDSDLGLNPNNKGDTIF----ISLPMLTEERRKDLVKNAKNYAEEAR 127
Query: 69 VCQIGVIGQKAIAAT-----VASDTVKHSEAFIGKSNQDYCSWIQD 109
V I I + A+ V D +K +EA + K +Y ++D
Sbjct: 128 VA-IRSIRKHALDEVKKVEGVGDDEIKRAEAEVQKITDEYIKRVED 172
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 75 IGQKAIAATVASDTVKHSEAFIG-----KSNQ-----DYCSWIQDPEKWGGAIELSILAD 124
+ +A+ A +KH E F G +S + DYC+ I++ KWG IE+ LA+
Sbjct: 213 LNSQALRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQALAN 272
Query: 125 YYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQ 158
+ Y+ + G + F + V+F++
Sbjct: 273 SLEVPVHVYNTE-------GPVLKFNPSTVKFEK 299
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAY 133
EAFI S ++Y +++P++W G +E+S L+ Y + Y
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFVIY 120
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAY 133
EAFI S ++Y +++P++W G +E+S L+ Y + Y
Sbjct: 80 EAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIY 120
>sp|Q8WYP5|ELYS_HUMAN Protein ELYS OS=Homo sapiens GN=AHCTF1 PE=1 SV=3
Length = 2266
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 23 EFDQTIFPVQKGR--TIGPAEDLALKLVKEQQRKK 55
EFD + P ++GR I P+ED+ K VKE++ K
Sbjct: 1964 EFDMSAIPRKRGRPRKINPSEDVGSKAVKEERSPK 1998
>sp|B2HME5|NADD_MYCMM Probable nicotinate-nucleotide adenylyltransferase
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=nadD PE=3 SV=1
Length = 215
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 4 YDGLHYDALAISPFEGAPEEFDQTIF-----PVQKGRTIGPAEDLALKLV 48
+D +HY L + E D+ +F P QKGR + PAED L V
Sbjct: 5 FDPIHYGHLVAASEVADRYELDEVVFVPSGQPWQKGRRVSPAEDRYLMTV 54
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 93 EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYY 126
EA IG S + Y +++P++W G +E+S L+ Y
Sbjct: 80 EAIIGGSFEGYLKRLENPQEWVGQMEISALSLMY 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,671,990
Number of Sequences: 539616
Number of extensions: 2638303
Number of successful extensions: 4909
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4870
Number of HSP's gapped (non-prelim): 33
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)