Query 030263
Match_columns 180
No_of_seqs 221 out of 446
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:53:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3by4_A OTU1, ubiquitin thioest 99.9 4.2E-23 1.4E-27 170.9 8.9 107 73-180 46-164 (212)
2 3by4_A OTU1, ubiquitin thioest 99.8 1.3E-20 4.4E-25 156.0 4.6 83 1-93 126-208 (212)
3 3pfy_A OTU domain-containing p 99.6 3E-16 1E-20 127.6 4.6 69 74-143 87-155 (185)
4 3phx_A RNA-directed RNA polyme 99.5 4.9E-15 1.7E-19 120.2 6.7 70 73-145 64-137 (185)
5 3phu_A RNA-directed RNA polyme 99.5 6.3E-15 2.2E-19 122.7 5.3 70 73-145 64-137 (219)
6 4dhi_B Ubiquitin thioesterase 99.2 2E-11 6.8E-16 105.0 6.2 62 75-136 172-235 (284)
7 1tff_A Ubiquitin thiolesterase 99.2 3.5E-11 1.2E-15 100.6 6.5 65 74-138 133-199 (234)
8 2zfy_A Ubiquitin thioesterase 99.2 4.4E-11 1.5E-15 99.9 6.7 65 74-138 136-202 (234)
9 4ddg_A Ubiquitin-conjugating e 98.8 5.9E-09 2E-13 92.9 6.5 65 74-138 301-367 (399)
10 3phu_A RNA-directed RNA polyme 87.3 0.23 7.9E-06 40.8 1.9 20 1-20 145-165 (219)
11 3t68_A Succinyl-diaminopimelat 47.1 59 0.002 25.9 7.1 13 2-15 65-77 (268)
12 3hl5_A Baculoviral IAP repeat- 43.7 2.8 9.6E-05 29.8 -1.3 63 44-110 30-94 (95)
13 1znf_A 31ST zinc finger from X 42.0 16 0.00054 17.5 1.9 23 66-88 3-25 (27)
14 1ard_A Yeast transcription fac 37.6 24 0.00081 17.0 2.2 23 66-88 4-26 (29)
15 1rik_A E6APC1 peptide; E6-bind 34.1 27 0.00092 16.8 2.1 24 65-88 3-26 (29)
16 2kvf_A Zinc finger and BTB dom 33.8 26 0.00089 16.9 2.0 20 66-85 5-24 (28)
17 1srk_A Zinc finger protein ZFP 31.6 35 0.0012 17.4 2.4 25 65-89 8-32 (35)
18 2m0d_A Zinc finger and BTB dom 31.4 34 0.0012 16.3 2.2 24 65-88 4-27 (30)
19 2m0f_A Zinc finger and BTB dom 31.0 30 0.001 16.5 1.9 23 66-88 4-26 (29)
20 1lg4_A Doppel protein, prion-l 30.9 12 0.00043 27.7 0.4 11 4-14 63-73 (129)
21 1i17_A Mouse doppel, prion-lik 29.8 11 0.00039 27.1 0.1 11 4-14 37-47 (107)
22 2elx_A Zinc finger protein 406 28.7 40 0.0014 17.1 2.3 25 65-89 8-32 (35)
23 2elr_A Zinc finger protein 406 28.7 38 0.0013 17.3 2.2 24 65-88 10-33 (36)
24 3d9t_A Baculoviral IAP repeat- 28.6 4.8 0.00016 28.6 -2.1 62 44-109 32-95 (97)
25 4ax2_A RAP1B; toxin, resistanc 28.3 14 0.00049 28.3 0.4 49 42-90 80-134 (142)
26 2elt_A Zinc finger protein 406 28.3 38 0.0013 17.4 2.1 24 65-88 10-33 (36)
27 1wii_A Hypothetical UPF0222 pr 27.8 32 0.0011 24.0 2.1 32 61-107 44-75 (85)
28 1klr_A Zinc finger Y-chromosom 27.6 37 0.0013 16.2 1.9 22 66-87 4-25 (30)
29 2elq_A Zinc finger protein 406 26.9 44 0.0015 17.2 2.2 24 65-88 10-33 (36)
30 2jn4_A Hypothetical protein FI 26.6 2.6 8.9E-05 29.9 -3.7 22 98-119 40-61 (87)
31 2kvh_A Zinc finger and BTB dom 26.5 45 0.0015 15.9 2.1 17 66-82 5-21 (27)
32 2elv_A Zinc finger protein 406 26.3 41 0.0014 17.3 2.0 25 64-88 9-33 (36)
33 2els_A Zinc finger protein 406 26.1 43 0.0015 17.2 2.1 24 65-88 10-33 (36)
34 1rim_A E6APC2 peptide; E6-bind 25.5 46 0.0016 17.1 2.1 24 66-89 4-27 (33)
35 2e9h_A EIF-5, eukaryotic trans 25.2 23 0.00078 27.5 1.0 30 60-89 122-153 (157)
36 2g2k_A EIF-5, eukaryotic trans 25.0 25 0.00085 27.7 1.2 34 60-93 115-150 (170)
37 1njq_A Superman protein; zinc- 24.7 50 0.0017 17.5 2.2 25 65-89 7-31 (39)
38 4fuu_A Leucine aminopeptidase; 24.5 53 0.0018 27.0 3.3 46 6-55 100-146 (309)
39 2m0e_A Zinc finger and BTB dom 24.3 37 0.0012 16.1 1.5 20 66-85 4-23 (29)
40 2kvg_A Zinc finger and BTB dom 22.9 47 0.0016 16.0 1.7 15 66-80 5-19 (27)
41 2z84_A UFSP1, UFM1-specific pr 22.7 1E+02 0.0035 25.1 4.5 35 105-139 85-120 (218)
42 2elo_A Zinc finger protein 406 22.4 53 0.0018 16.9 2.0 25 65-89 10-34 (37)
43 1paa_A Yeast transcription fac 22.3 41 0.0014 16.2 1.4 17 66-82 4-20 (30)
44 1p7a_A BF3, BKLF, kruppel-like 22.3 90 0.0031 15.9 3.3 25 64-88 11-35 (37)
45 2epv_A Zinc finger protein 268 20.0 1.1E+02 0.0038 16.5 3.2 30 60-89 8-37 (44)
No 1
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.88 E-value=4.2e-23 Score=170.88 Aligned_cols=107 Identities=23% Similarity=0.410 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeeeeccc-----
Q 030263 73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQIS----- 147 (180)
Q Consensus 73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~fge~~----- 147 (180)
...+|+.++++|++||+.|.|+++++++++||+||+++..|||+|||.|||++|+++|.|++.+++++.+||+-.
T Consensus 46 ~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~~~~~I 125 (212)
T 3by4_A 46 VRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDKFDNYI 125 (212)
T ss_dssp SHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTTCSEEE
T ss_pred HHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCCCCCeE
Confidence 458999999999999999999999999999999999999999999999999999999999999888999998711
Q ss_pred --CCCC-----CCCCCCeeeeeCCCCCChhHHHHHHhhhC
Q 030263 148 --AFEG-----APVEFDQSSVPVRKDRTIGPAEELAFETC 180 (180)
Q Consensus 148 --~~~~-----~~~~~d~t~f~~~d~~~~~~~l~~a~~l~ 180 (180)
.+.+ .-.+.|+|+|+++|++. +.++++|++||
T Consensus 126 ~L~Y~g~HYdsl~~~~d~~~f~~~~~~~-~~~~~~a~~l~ 164 (212)
T 3by4_A 126 LILFNGIHYDSLTMNEFKTVFNKNQPES-DDVLTAALQLA 164 (212)
T ss_dssp EEEECSSCEEEEEETTTBCCEETTSTTH-HHHHHHHHHHH
T ss_pred EEEEcCCcceEEecCCCcccCCccccch-HHHHHHHHHHH
Confidence 0011 11278999999998655 67777777764
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.80 E-value=1.3e-20 Score=155.97 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=43.9
Q ss_pred CeeecccccceeeccCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHHhcCCCcccccceeeecccccccchhHHH
Q 030263 1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAI 80 (180)
Q Consensus 1 ~liYsGIHYD~l~l~~~~~~~~~~d~t~F~~~d~~~l~~~~~~A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~v 80 (180)
+|+|+|.|||+|.+ ++|+|+||++|+.. +.++++|++||++||++||||||++|+|+|+.|++++.|++ .
T Consensus 126 ~L~Y~g~HYdsl~~--------~~d~~~f~~~~~~~-~~~~~~a~~l~~~~~~~~~~t~~~~~~l~C~~C~~~~~g~~-~ 195 (212)
T 3by4_A 126 LILFNGIHYDSLTM--------NEFKTVFNKNQPES-DDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQMTFVGER-E 195 (212)
T ss_dssp EEEECSSCEEEEEE--------TTTBCCEETTSTTH-HHHHHHHHHHHHHHHHTTCCC----------------------
T ss_pred EEEEcCCcceEEec--------CCCcccCCccccch-HHHHHHHHHHHHHHHHcCCcccccCeEEEcccCCCcccCHH-H
Confidence 48899999999988 57899999998654 56779999999999999999999999999999999999996 6
Q ss_pred HHHHHhccccccc
Q 030263 81 AATVASDTVKHSE 93 (180)
Q Consensus 81 A~~I~~~p~~y~~ 93 (180)
|..|++.++|.+-
T Consensus 196 a~~ha~~tgH~~f 208 (212)
T 3by4_A 196 VARHAESTGHVDF 208 (212)
T ss_dssp -------------
T ss_pred HHHHHHHhCCCCC
Confidence 7779999999764
No 3
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.61 E-value=3e-16 Score=127.61 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeee
Q 030263 74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLY 143 (180)
Q Consensus 74 l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~f 143 (180)
..+|+.++++|++|++.|.+ |++.++++||+||+++..|||+|||.|||++|+++|.|++..+.++..|
T Consensus 87 ~~LR~~vv~yi~~n~d~f~~-Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~ 155 (185)
T 3pfy_A 87 EVVRKHCMDYLMKNADYFSN-YVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTF 155 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHTT-CC-----------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEe
Confidence 58999999999999999999 6678999999999999999999999999999999999999865555444
No 4
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.55 E-value=4.9e-15 Score=120.25 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=62.2
Q ss_pred ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCc----eeeeec
Q 030263 73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR----CDLYGQ 145 (180)
Q Consensus 73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~----~~~fge 145 (180)
...+|+.+++++++|++. +++++++++||+||+++..|||+|||.|||++|+++|.|+++++.. +.+||+
T Consensus 64 ~~~LR~~~~~yi~~~~~~---~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~ 137 (185)
T 3phx_A 64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD 137 (185)
T ss_dssp HHHHHHHHHHHGGGCTTH---HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESS
T ss_pred HHHHHHHHHHHHHhChHh---hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCC
Confidence 458999999999999999 5789999999999999999999999999999999999999865543 688876
No 5
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.52 E-value=6.3e-15 Score=122.67 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=63.7
Q ss_pred ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC----ceeeeec
Q 030263 73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTT----RCDLYGQ 145 (180)
Q Consensus 73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~----~~~~fge 145 (180)
...+|+.+++++++|++. +++++++++||+||+++..|||+|||.|||++|+++|.|+++.+. ++.+||+
T Consensus 64 h~~LR~~va~yi~~n~d~---~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge 137 (219)
T 3phu_A 64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD 137 (219)
T ss_dssp HHHHHHHHHHHGGGCHHH---HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESS
T ss_pred HHHHHHHHHHHHHhChhh---hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecC
Confidence 358999999999999999 578999999999999999999999999999999999999976654 4788886
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.18 E-value=2e-11 Score=105.02 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=58.4
Q ss_pred chhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcC
Q 030263 75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136 (180)
Q Consensus 75 ~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~ 136 (180)
.+|.++|.+|+.|++.|.|++.| +++++||+ +|+.+..|||+|||.|||++|+++|.|+...
T Consensus 172 ~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylD 235 (284)
T 4dhi_B 172 FFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMD 235 (284)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEec
Confidence 69999999999999999997766 79999999 9999999999999999999999999998764
No 7
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.16 E-value=3.5e-11 Score=100.60 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263 74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT 138 (180)
Q Consensus 74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~ 138 (180)
..+|.++|.++++|++.|.|++-| .++++||+ .|+.+..|||+|||.|||+.|+++|.|++..++
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~ 199 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEM 199 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCC
Confidence 469999999999999999995443 59999999 899999999999999999999999999997654
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.15 E-value=4.4e-11 Score=99.93 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263 74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT 138 (180)
Q Consensus 74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~ 138 (180)
..+|.++|.++++|++.|.|++-| .++++||+ .|+.+..|||+|||.|||++|+++|.|++..++
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~ 202 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 202 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-C
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCC
Confidence 379999999999999999995544 59999998 599999999999999999999999999997654
No 9
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.79 E-value=5.9e-09 Score=92.87 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263 74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT 138 (180)
Q Consensus 74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~ 138 (180)
..+|.+++.+++.|++.|.|++-| +++++||+ +|+.+..|||+|||.|||++|+++|.|+....+
T Consensus 301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~ 367 (399)
T 4ddg_A 301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG 367 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCC
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCC
Confidence 369999999999999999995554 68999999 999999999999999999999999999976543
No 10
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=87.28 E-value=0.23 Score=40.78 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=15.6
Q ss_pred Ceeecc-cccceeeccCCCCC
Q 030263 1 MLIYDG-LHYDALAISPFEGA 20 (180)
Q Consensus 1 ~liYsG-IHYD~l~l~~~~~~ 20 (180)
+|+|+| +|||+|...+....
T Consensus 145 ~L~Y~g~~HYdSL~~~~d~~~ 165 (219)
T 3phu_A 145 NLLHSGQTHFDALRILPQFET 165 (219)
T ss_dssp EEEEETTTEEEEEEECTTTCC
T ss_pred EEEECCCcCchhheECCCCCC
Confidence 378999 99999988765433
No 11
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=47.11 E-value=59 Score=25.86 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=8.8
Q ss_pred eeecccccceeecc
Q 030263 2 LIYDGLHYDALAIS 15 (180)
Q Consensus 2 liYsGIHYD~l~l~ 15 (180)
|++.| |||+++..
T Consensus 65 i~l~~-H~D~vp~~ 77 (268)
T 3t68_A 65 FVFAG-HTDVVPAG 77 (268)
T ss_dssp EEEEE-ECCBCCCC
T ss_pred EEEEc-cccccCCC
Confidence 34444 99999664
No 12
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=43.68 E-value=2.8 Score=29.78 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCcccccceeeecccccccchhHHHHHHHHhccccc--cccccCCChHHHHHhcCCC
Q 030263 44 ALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKH--SEAFIGKSNQDYCSWIQDP 110 (180)
Q Consensus 44 A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~vA~~I~~~p~~y--~~~~L~~~~~eYc~~I~~~ 110 (180)
..+|| +.-=|||. ..-..+|..|+..|..-...-+...+|..++ -++++...-.+|++.|+..
T Consensus 30 ~~~LA---~AGFyy~g-~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f~~~~kg~~fv~~i~~~ 94 (95)
T 3hl5_A 30 KEQLA---RAGFYALG-EGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLT 94 (95)
T ss_dssp HHHHH---HTTEEECS-STTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHTCHHHHHHHTTT
T ss_pred HHHHH---hCCCeEcC-CCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcchHhhccHHHHHHHHcc
Confidence 34554 23334443 4678999999998864333333444444443 2344445567899888754
No 13
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.96 E-value=16 Score=17.49 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=14.5
Q ss_pred eecccccccchhHHHHHHHHhcc
Q 030263 66 CYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
+|..|+..+.-+......++.++
T Consensus 3 ~C~~C~k~f~~~~~l~~H~~~h~ 25 (27)
T 1znf_A 3 KCGLCERSFVEKSALSRHQRVHK 25 (27)
T ss_dssp BCSSSCCBCSSHHHHHHHGGGTC
T ss_pred cCCCCCCcCCCHHHHHHHHHHcC
Confidence 68899988766654444444443
No 14
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=37.59 E-value=24 Score=16.99 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=15.3
Q ss_pred eecccccccchhHHHHHHHHhcc
Q 030263 66 CYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
.|..|+..+.-+......++.|+
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~ 26 (29)
T 1ard_A 4 VCEVCTRAFARQEHLKRHYRSHT 26 (29)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHHS
T ss_pred ECCCCCcccCCHHHHHHHHHHhc
Confidence 68999988766655555455444
No 15
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=34.09 E-value=27 Score=16.83 Aligned_cols=24 Identities=4% Similarity=0.144 Sum_probs=15.6
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
-.|..|+..+.-+......++.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHILLHE 26 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHTGGG
T ss_pred ccCCCCCchhCCHHHHHHHHHHhc
Confidence 368999988766655555454444
No 16
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.79 E-value=26 Score=16.87 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=13.0
Q ss_pred eecccccccchhHHHHHHHH
Q 030263 66 CYGVCQIGVIGQKAIAATVA 85 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~ 85 (180)
.|..|+..+.-+......++
T Consensus 5 ~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 5 SCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp ECSSSCCEESCHHHHHHHHT
T ss_pred cCCCCCcccCCHHHHHHHHH
Confidence 68999988766554444333
No 17
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.57 E-value=35 Score=17.43 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=17.4
Q ss_pred eeecccccccchhHHHHHHHHhccc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
-+|..|+..+.-+.....-++.+++
T Consensus 8 ~~C~~C~k~f~~~~~l~~H~~~H~~ 32 (35)
T 1srk_A 8 FVCRICLSAFTTKANCARHLKVHTD 32 (35)
T ss_dssp EECSSSCCEESSHHHHHHHHGGGTS
T ss_pred eeCCCCCcccCCHHHHHHHHHHcCC
Confidence 4799999988776655555555543
No 18
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.40 E-value=34 Score=16.33 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=15.1
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
.+|..|+..+.-.......++.+.
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~~h~ 27 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLETHD 27 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHHTTC
T ss_pred ccCCCCCcccCCHHHHHHHHHHhc
Confidence 368999988765554444444443
No 19
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.01 E-value=30 Score=16.51 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=14.1
Q ss_pred eecccccccchhHHHHHHHHhcc
Q 030263 66 CYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
+|..|+..+.-+......++.|+
T Consensus 4 ~C~~C~k~f~~~~~l~~H~~~H~ 26 (29)
T 2m0f_A 4 KCRECGKQFTTSGNLKRHLRIHS 26 (29)
T ss_dssp ECTTTSCEESCHHHHHHHHHHHH
T ss_pred cCCCCCCccCChhHHHHHHHHhc
Confidence 68899988765544444444443
No 20
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=30.92 E-value=12 Score=27.74 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=8.7
Q ss_pred ecccccceeec
Q 030263 4 YDGLHYDALAI 14 (180)
Q Consensus 4 YsGIHYD~l~l 14 (180)
=||||||.-+-
T Consensus 63 PDgIhY~gCse 73 (129)
T 1lg4_A 63 PDGIHYNGCSE 73 (129)
T ss_dssp CSCCCSCSCCC
T ss_pred CCccccccccc
Confidence 38999998754
No 21
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=29.83 E-value=11 Score=27.14 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.6
Q ss_pred ecccccceeec
Q 030263 4 YDGLHYDALAI 14 (180)
Q Consensus 4 YsGIHYD~l~l 14 (180)
=||||||.-+-
T Consensus 37 PDgIhY~gCse 47 (107)
T 1i17_A 37 PDGIYYEGCSE 47 (107)
T ss_dssp CSEEECCCCSS
T ss_pred CCccccccccc
Confidence 38999998743
No 22
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.74 E-value=40 Score=17.06 Aligned_cols=25 Identities=4% Similarity=0.119 Sum_probs=16.7
Q ss_pred eeecccccccchhHHHHHHHHhccc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
-.|..|+..+.-+.....-++.+.+
T Consensus 8 ~~C~~C~k~f~~~~~L~~H~~~h~~ 32 (35)
T 2elx_A 8 YVCALCLKKFVSSIRLRSHIREVHG 32 (35)
T ss_dssp EECSSSCCEESSHHHHHHHHHHTSC
T ss_pred eECCCCcchhCCHHHHHHHHHHHcC
Confidence 4799999988766555554555443
No 23
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.70 E-value=38 Score=17.32 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=15.6
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
-+|..|+..+.-+......++.++
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elr_A 10 HLCDMCGKKFKSKGTLKSHKLLHT 33 (36)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred eecCcCCCCcCchHHHHHHHHHhc
Confidence 479999998766554444444443
No 24
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=28.61 E-value=4.8 Score=28.59 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCcccccceeeecccccccchhHHHHHHHHhccccc--cccccCCChHHHHHhcCC
Q 030263 44 ALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKH--SEAFIGKSNQDYCSWIQD 109 (180)
Q Consensus 44 A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~vA~~I~~~p~~y--~~~~L~~~~~eYc~~I~~ 109 (180)
..+|| +.-=|||.. .-.++|..|+..|..-...-+...+|..+| -++++-..-.+|++.|+.
T Consensus 32 ~~~LA---~AGFyy~g~-~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f~~~~kg~~~v~~~~~ 95 (97)
T 3d9t_A 32 PEQLA---SAGFYYVGR-NDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 95 (97)
T ss_dssp HHHHH---HTTEEECSS-TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHCHHHHHHHTT
T ss_pred HHHHH---HcCCCCcCC-CCEEEecCcCCEecCCCCCCCHHHHHHHhCccChhhHhhccHHHHHHHHh
Confidence 44555 233345543 568999999998754322222333333333 233333445678887764
No 25
>4ax2_A RAP1B; toxin, resistance protein, helical fold, S-SAD phasing; 1.88A {Serratia marcescens}
Probab=28.26 E-value=14 Score=28.34 Aligned_cols=49 Identities=10% Similarity=-0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCccc-----ccc-eeeecccccccchhHHHHHHHHhcccc
Q 030263 42 DLALKLVKEQQRKKTYTDT-----ANF-TLCYGVCQIGVIGQKAIAATVASDTVK 90 (180)
Q Consensus 42 ~~A~~L~~~lk~~~~~Tdt-----~~F-~l~C~~C~~~l~lr~~vA~~I~~~p~~ 90 (180)
++...|+++...+.++++. .+| .+||....++-+|...+-++|-.||++
T Consensus 80 ~ai~~LV~kYLar~~~~~~~~~~~~k~~lLKCLDLYHS~ELd~l~kk~Vi~~P~~ 134 (142)
T 4ax2_A 80 EKINVLIDKYKSRINEFHSETKDKSQGVTLNCLRLYHSPELDKLSRQLIAGNPDR 134 (142)
T ss_dssp HHHHHHHHHHTTCCCCCCC----CCCCHHHHHHHHHHCHHHHHHHHHTBSSCTTC
T ss_pred HHHHHHHHHHHhccCCCCcccccccccceeehhhhhcCHHHHHHHHHHhcCCCCc
Confidence 4567888887777666654 234 479999999999998888777677765
No 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.25 E-value=38 Score=17.36 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=16.0
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
-+|..|+..+.-+......++.++
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elt_A 10 YKCPQCSYASAIKANLNVHLRKHT 33 (36)
T ss_dssp EECSSSSCEESSHHHHHHHHHHHT
T ss_pred CCCCCCCcccCCHHHHHHHHHHcc
Confidence 479999998876655555444444
No 27
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=27.78 E-value=32 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=23.6
Q ss_pred ccceeeecccccccchhHHHHHHHHhccccccccccCCChHHHHHhc
Q 030263 61 ANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWI 107 (180)
Q Consensus 61 ~~F~l~C~~C~~~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I 107 (180)
....+.|.+|+..++.+ -..|.+|++-|.+||
T Consensus 44 ~~g~l~C~~Cg~~~~~~---------------i~~L~epiDVYs~Wi 75 (85)
T 1wii_A 44 NTGVISCTVCLEEFQTP---------------ITYLSEPVDVYSDWI 75 (85)
T ss_dssp TEEEEEESSSCCEEEEE---------------CCSSCCTTHHHHHHH
T ss_pred CEEEEEcccCCCeEEec---------------cCccCcchhhHHHHH
Confidence 36788999998765432 124678999999998
No 28
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.65 E-value=37 Score=16.19 Aligned_cols=22 Identities=5% Similarity=0.212 Sum_probs=13.9
Q ss_pred eecccccccchhHHHHHHHHhc
Q 030263 66 CYGVCQIGVIGQKAIAATVASD 87 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~~~ 87 (180)
.|..|+..+.-+......++.+
T Consensus 4 ~C~~C~k~f~~~~~l~~H~~~h 25 (30)
T 1klr_A 4 QCQYCEFRSADSSNLKTHIKTK 25 (30)
T ss_dssp CCSSSSCCCSCSHHHHHHHHHH
T ss_pred cCCCCCCccCCHHHHHHHHHHH
Confidence 6889998876555444444443
No 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.85 E-value=44 Score=17.21 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=16.2
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
.+|..|+..+.-+......++.|+
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elq_A 10 FKCSLCEYATRSKSNLKAHMNRHS 33 (36)
T ss_dssp EECSSSSCEESCHHHHHHHHHHSS
T ss_pred ccCCCCCchhCCHHHHHHHHHHhc
Confidence 479999998876655555455554
No 30
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=26.60 E-value=2.6 Score=29.94 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=17.2
Q ss_pred CChHHHHHhcCCCCCcccHHHH
Q 030263 98 KSNQDYCSWIQDPEKWGGAIEL 119 (180)
Q Consensus 98 ~~~~eYc~~I~~~~~WGG~IEL 119 (180)
++.+|=+-.++++..|||.+.|
T Consensus 40 KDLEE~VVs~E~~~~WGG~vtL 61 (87)
T 2jn4_A 40 KDLEELIVEMENPALWGGKVTL 61 (87)
T ss_dssp TTEEEEEEEESSSSSCSSEEEE
T ss_pred CcchhheeeeecccccCcEEEE
Confidence 5677767778899999997654
No 31
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.49 E-value=45 Score=15.85 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=11.6
Q ss_pred eecccccccchhHHHHH
Q 030263 66 CYGVCQIGVIGQKAIAA 82 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~ 82 (180)
.|..|+..+.-+.....
T Consensus 5 ~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 5 SCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp ECSSSSCEESSHHHHHH
T ss_pred cCCCcChhhCCHHHHHH
Confidence 68999988765544333
No 32
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.31 E-value=41 Score=17.35 Aligned_cols=25 Identities=4% Similarity=-0.008 Sum_probs=16.7
Q ss_pred eeeecccccccchhHHHHHHHHhcc
Q 030263 64 TLCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 64 ~l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
..+|..|+..+.-+.....-++.|+
T Consensus 9 ~~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDRHMLVHG 33 (36)
T ss_dssp CEECSSSCCEESSHHHHHHHHTTTS
T ss_pred CeECCCCCCccCCHHHHHHHHHHhc
Confidence 3479999998876665555455444
No 33
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.09 E-value=43 Score=17.25 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=15.8
Q ss_pred eeecccccccchhHHHHHHHHhcc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
-.|..|+..+.-+.....-++.|+
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~~H~ 33 (36)
T 2els_A 10 FTCEYCNKVFKFKHSLQAHLRIHT 33 (36)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHC
T ss_pred EECCCCCceeCCHHHHHHHHHHhC
Confidence 479999998766555544444444
No 34
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.47 E-value=46 Score=17.11 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=15.6
Q ss_pred eecccccccchhHHHHHHHHhccc
Q 030263 66 CYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
.|..|+..+.-......-++.|++
T Consensus 4 ~C~~C~k~F~~~~~L~~H~~~H~~ 27 (33)
T 1rim_A 4 ACPECPKRFMRSDHLSKHITLHEL 27 (33)
T ss_dssp CCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred cCCCCCchhCCHHHHHHHHHHhCC
Confidence 689999987665555554555543
No 35
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.25 E-value=23 Score=27.52 Aligned_cols=30 Identities=3% Similarity=0.055 Sum_probs=24.0
Q ss_pred cccceeeeccccc--ccchhHHHHHHHHhccc
Q 030263 60 TANFTLCYGVCQI--GVIGQKAIAATVASDTV 89 (180)
Q Consensus 60 t~~F~l~C~~C~~--~l~lr~~vA~~I~~~p~ 89 (180)
...+.++|..||. .+..|...+.+|..||-
T Consensus 122 ~r~~~l~C~ACGa~~~V~~~~Kl~~~i~knpp 153 (157)
T 2e9h_A 122 KQTIGNSCKACGYRGMLDTHHKLCTFILKNPP 153 (157)
T ss_dssp TTEEEEECSSSCCEEECCCCSSHHHHHHHSCC
T ss_pred CCEEEEEccCCCCCCcccchhhhhhhhhcCCC
Confidence 3458899999996 45677789999998874
No 36
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=25.04 E-value=25 Score=27.67 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=26.6
Q ss_pred cccceeeeccccc--ccchhHHHHHHHHhccccccc
Q 030263 60 TANFTLCYGVCQI--GVIGQKAIAATVASDTVKHSE 93 (180)
Q Consensus 60 t~~F~l~C~~C~~--~l~lr~~vA~~I~~~p~~y~~ 93 (180)
...+.++|..||. .+..|...+.+|..||-.-..
T Consensus 115 ~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~ 150 (170)
T 2g2k_A 115 KQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSD 150 (170)
T ss_dssp TTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCS
T ss_pred CCEEEEEccccCCccccccccceeeeeeecCCCCCc
Confidence 3558899999996 456777799999999976444
No 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=24.72 E-value=50 Score=17.46 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=17.6
Q ss_pred eeecccccccchhHHHHHHHHhccc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
.+|..|+..+.-+.....-++.|++
T Consensus 7 ~~C~~C~k~f~~~~~L~~H~~~H~~ 31 (39)
T 1njq_A 7 YTCSFCKREFRSAQALGGHMNVHRR 31 (39)
T ss_dssp EECTTTCCEESSHHHHHHHHHTTCC
T ss_pred eECCCCCcccCCHHHHHHHHHHcCC
Confidence 4799999988776655555555554
No 38
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=24.55 E-value=53 Score=26.97 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=24.2
Q ss_pred ccccceeeccCCCCCCCCCCeeeee-CCCCCccchHHHHHHHHHHHHHhcC
Q 030263 6 GLHYDALAISPFEGAPEEFDQTIFP-VQKGRTIGPAEDLALKLVKEQQRKK 55 (180)
Q Consensus 6 GIHYD~l~l~~~~~~~~~~d~t~F~-~~d~~~l~~~~~~A~~L~~~lk~~~ 55 (180)
|-|||.+...+....+. ...+.|+ .+|.. .-.+..+++|+.|++.+
T Consensus 100 ~aH~Ds~~~~~~~~~~~-~~~~~~~GA~D~a---SG~a~lLE~ar~l~~~~ 146 (309)
T 4fuu_A 100 FAHWDTRPWADNDADEK-NHHTPILGANDGA---SGVGALLEIARLVNQQQ 146 (309)
T ss_dssp EEECCCCSCCTTCSSGG-GTTSCCCCTTTTH---HHHHHHHHHHHHHHHSC
T ss_pred EeecCCCCCCCCccccc-cccCCcCCcccCc---hhHHHHHHHHHHHhhcC
Confidence 67999997764322111 1123344 33332 12255677777777653
No 39
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.35 E-value=37 Score=16.07 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=11.5
Q ss_pred eecccccccchhHHHHHHHH
Q 030263 66 CYGVCQIGVIGQKAIAATVA 85 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~~I~ 85 (180)
+|..|+..+.-.......++
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~ 23 (29)
T 2m0e_A 4 KCPHCDKKFNQVGNLKAHLK 23 (29)
T ss_dssp CCSSCCCCCCTTTHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHH
Confidence 58889887654433333333
No 40
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.88 E-value=47 Score=15.96 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=10.6
Q ss_pred eecccccccchhHHH
Q 030263 66 CYGVCQIGVIGQKAI 80 (180)
Q Consensus 66 ~C~~C~~~l~lr~~v 80 (180)
+|..|+..+.-+...
T Consensus 5 ~C~~C~k~f~~~~~l 19 (27)
T 2kvg_A 5 RCPLCRAGCPSLASM 19 (27)
T ss_dssp EETTTTEEESCHHHH
T ss_pred CCCCCCcccCCHHHH
Confidence 699999887655433
No 41
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=22.70 E-value=1e+02 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.6
Q ss_pred HhcCCCCCcccHHHHHHHHhH-hCceEEEEEcCCCc
Q 030263 105 SWIQDPEKWGGAIELSILADY-YGSEIAAYDIQTTR 139 (180)
Q Consensus 105 ~~I~~~~~WGG~IEL~iLS~~-~~~~I~v~d~~~~~ 139 (180)
..+..+..|=|.+|+.++=.. |+++-.++++.++.
T Consensus 85 ~~~~GSrkWIGt~E~~~~l~sllgI~cki~~~~~g~ 120 (218)
T 2z84_A 85 PGFRGSRNWIGCVEASLCLEHFGGPQGRLCHLPRGV 120 (218)
T ss_dssp TTCTTCCCCCCHHHHHHHHHHTTCSEEEEEEECSCS
T ss_pred CccccccceechHHHHHHHHhhcCCceEEEEccCch
Confidence 447889999999999998876 99999999988775
No 42
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=53 Score=16.89 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=16.1
Q ss_pred eeecccccccchhHHHHHHHHhccc
Q 030263 65 LCYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 65 l~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
-.|..|+..+.-+.....-++.+++
T Consensus 10 ~~C~~C~k~f~~~~~l~~H~~~h~~ 34 (37)
T 2elo_A 10 YSCPVCEKSFSEDRLIKSHIKTNHP 34 (37)
T ss_dssp CEETTTTEECSSHHHHHHHHHHHCS
T ss_pred cCCCCCCCccCCHHHHHHHHHHHcC
Confidence 4799999987665545444444443
No 43
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.31 E-value=41 Score=16.23 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=11.8
Q ss_pred eecccccccchhHHHHH
Q 030263 66 CYGVCQIGVIGQKAIAA 82 (180)
Q Consensus 66 ~C~~C~~~l~lr~~vA~ 82 (180)
.|..|+..+.-+.....
T Consensus 4 ~C~~C~k~f~~~~~l~~ 20 (30)
T 1paa_A 4 ACGLCNRAFTRRDLLIR 20 (30)
T ss_dssp BCTTTCCBCSSSHHHHH
T ss_pred CCcccCcccCChHHHHH
Confidence 68899988766554444
No 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.29 E-value=90 Score=15.90 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=16.5
Q ss_pred eeeecccccccchhHHHHHHHHhcc
Q 030263 64 TLCYGVCQIGVIGQKAIAATVASDT 88 (180)
Q Consensus 64 ~l~C~~C~~~l~lr~~vA~~I~~~p 88 (180)
.-+|..|+..+.-+.....-++.+.
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~~~H~ 35 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDHLALHRKRHM 35 (37)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred CccCCCCCcccCcHHHHHHHHHHhc
Confidence 4589999998876655555444443
No 45
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=1.1e+02 Score=16.49 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=19.7
Q ss_pred cccceeeecccccccchhHHHHHHHHhccc
Q 030263 60 TANFTLCYGVCQIGVIGQKAIAATVASDTV 89 (180)
Q Consensus 60 t~~F~l~C~~C~~~l~lr~~vA~~I~~~p~ 89 (180)
+..-.-.|..|+..+.-+.....-++.+.+
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~ 37 (44)
T 2epv_A 8 SGEKPYECNECGKAFIWKSLLIVHERTHAG 37 (44)
T ss_dssp CCCCSEECSSSCCEESSHHHHHHHHGGGSS
T ss_pred CCCcCeECCCCCcccCchHHHHHHHhHhcC
Confidence 333345899999998766655555555544
Done!