BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030264
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAP-PKAEKLVEFHTDVVKGAVAKFPGHPLILAGKSM 60
L KALD + + T + + GK + VE V++ + + LAG S
Sbjct: 55 LAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSF 114
Query: 61 GSRVSCMVACKEDIAASAVLCLGYPLKGMNGAVRDELLLQITVPIMFVQGSKDGLCPLDK 120
G+ +S VA + +A + +G L Q+ P + VQG +D + P ++
Sbjct: 115 GAYISAKVAYDQKVAQLISVAPPVFYEGFAS------LTQMASPWLIVQGDQDEVVPFEQ 168
Query: 121 LEAVRKKMKSLSELHLIDGGDHSF 144
++A ++ S E ++ G H F
Sbjct: 169 VKAFVNQISSPVEFVVMSGASHFF 192
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 28 PKAEKLVEFHTDVVKGAVAKFPG--HPLILAGKSMGSRVSCMVACKEDIAASAVLCLGYP 85
P A+ L + D V A+ G H L++ G G R++ + A +AV G
Sbjct: 92 PDAQVLADL--DHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKL 149
Query: 86 L--KGMNGAVRD-ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMK---SLSELHLIDG 139
+ K +N ++ + + P++ + G+KD P D +E R+ ++ + +E+ +
Sbjct: 150 VGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIVVYPE 209
Query: 140 GDHSFK 145
DH+F
Sbjct: 210 ADHAFN 215
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 35/150 (23%)
Query: 11 VVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVA--------------KFPGHPLILA 56
++ FD P G+R+ PP + K + +V + A+ +F G PL LA
Sbjct: 54 LLAFDAP--RHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRF-GLPLFLA 110
Query: 57 GKSMGSRVSCMVACKEDIAASAVLCL---GYPLKGMNG-AVRDELLLQIT---------- 102
G S+G+ V+ ++ E VL G+P K G V D +L +
Sbjct: 111 GGSLGAFVAHLL-LAEGFRPRGVLAFIGSGFPXKLPQGQVVEDPGVLALYQAPPATRGEA 169
Query: 103 ---VPIMFVQGSKDGLCPLDKLEAVRKKMK 129
VP++ + GS+D + PL + E + ++
Sbjct: 170 YGGVPLLHLHGSRDHIVPLARXEKTLEALR 199
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 29.6 bits (65), Expect = 0.86, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMG 61
+G L +F Y Y K + +VEFH+D K A FPG + A + +
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDYTKIRSATFPGVQMKFALQKLL 334
Query: 62 SRVS 65
++V+
Sbjct: 335 TKVA 338
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 96 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 144
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 96 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 144
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 96 ELLLQITVPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 144
E+ Q T P+ + G+ D + + + + ++ S LHLI+G DH F
Sbjct: 201 EVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-STLHLIEGADHCF 248
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 116
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 224 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 259
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 116
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 207 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 242
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EFHTDV------VKGAVAKFPGHPL 53
L + L ++++ F + ++ G+ + E++V +FH V V +PG P+
Sbjct: 61 LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPV 116
Query: 54 ILAGKSMGSRVSCMVACKE 72
L G SMG ++ + A +
Sbjct: 117 FLLGHSMGGAIAILTAAER 135
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 116
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 224 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 259
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EFHTDV------VKGAVAKFPGHPL 53
L + L ++++ F + ++ G+ + E++V +FH V V +PG P+
Sbjct: 78 LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPV 133
Query: 54 ILAGKSMGSRVSCMVACKE 72
L G SMG ++ + A +
Sbjct: 134 FLLGHSMGGAIAILTAAER 152
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 LCLGYPLKGMNGAVRDELLL-QITVPIMFVQGSKDGLC 116
+C G L +N R E L ++TVP + +QGS D LC
Sbjct: 225 VCFGIQL--LNAVSRVERALPKLTVPFLLLQGSADRLC 260
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EFHTDV------VKGAVAKFPGHPL 53
L + L ++++ F + ++ G+ + E++V +FH V V +PG P+
Sbjct: 79 LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDFHVFVRDVLQHVDSMQKDYPGLPV 134
Query: 54 ILAGKSMGSRVSCMVACKE 72
L G SMG ++ + A +
Sbjct: 135 FLLGHSMGGAIAILTAAER 153
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 284 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 322
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 27.3 bits (59), Expect = 5.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 27.3 bits (59), Expect = 5.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 95 DELLLQIT----VPIMFVQGSKDGLCPLDKLEAVRKKMKSLSELHLIDGGDHSF 144
D+LL + +P + V G D C + + K +ELH+++G HS+
Sbjct: 246 DQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE-AELHIVEGAGHSY 298
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 26.9 bits (58), Expect = 5.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 2 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 50
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|3J21|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 255
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 17 PYIAGGKRKAPPKAEKLV 34
P+ GG+R PPK EK++
Sbjct: 84 PFARGGRRTHPPKVEKII 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,156,758
Number of Sequences: 62578
Number of extensions: 196590
Number of successful extensions: 503
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 30
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)