Query 030267
Match_columns 180
No_of_seqs 92 out of 94
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xff_A D-fructose-6-, glucosam 95.8 0.0081 2.8E-07 48.3 4.4 66 74-139 91-163 (240)
2 1jgt_A Beta-lactam synthetase; 95.5 0.013 4.4E-07 52.7 4.9 63 74-143 69-132 (513)
3 1ct9_A Asparagine synthetase B 94.5 0.17 5.9E-06 45.9 9.2 98 40-145 30-136 (553)
4 2bpl_A Glucosamine--fructose-6 94.3 0.16 5.4E-06 46.2 8.6 64 74-139 91-163 (608)
5 1q15_A CARA; CMPR, (2S,5S)-5-c 93.9 0.065 2.2E-06 48.0 5.1 60 74-141 50-113 (503)
6 1ecf_A Glutamine phosphoribosy 89.7 0.26 8.9E-06 44.1 4.0 69 75-143 95-178 (504)
7 1ao0_A Glutamine phosphoribosy 88.7 0.12 4.2E-06 45.5 1.1 71 74-144 95-170 (459)
8 3mdn_A Glutamine aminotransfer 63.1 1.5 5E-05 36.6 -0.1 66 74-144 107-198 (274)
9 4ham_A LMO2241 protein; struct 59.7 5.1 0.00017 29.2 2.3 43 84-137 38-80 (134)
10 3tqn_A Transcriptional regulat 47.4 11 0.00037 26.8 2.3 42 85-137 34-75 (113)
11 3by6_A Predicted transcription 46.3 9.8 0.00034 27.7 2.0 42 85-137 36-77 (126)
12 2b0l_A GTP-sensing transcripti 42.9 12 0.00042 26.6 2.1 30 83-117 42-71 (102)
13 1rr7_A Middle operon regulator 42.9 5.6 0.00019 30.0 0.2 22 74-97 84-105 (129)
14 1v4r_A Transcriptional repress 42.0 10 0.00035 26.0 1.5 40 85-135 36-75 (102)
15 2zyz_A Putative uncharacterize 39.5 27 0.00091 26.3 3.5 39 105-143 24-67 (116)
16 2ek5_A Predicted transcription 39.2 17 0.00059 26.6 2.4 44 84-138 28-71 (129)
17 1bh9_B TAFII28; histone fold, 38.6 15 0.00052 26.5 2.0 16 105-120 74-89 (89)
18 3neu_A LIN1836 protein; struct 38.5 19 0.00063 26.1 2.4 41 86-137 39-79 (125)
19 3ajv_A Putative uncharacterize 38.3 15 0.00052 30.1 2.2 28 105-138 104-131 (190)
20 2dn9_A DNAJ homolog subfamily 32.6 22 0.00074 23.5 1.8 26 90-115 31-62 (79)
21 2yua_A Williams-beuren syndrom 32.2 17 0.0006 25.4 1.4 27 89-115 40-72 (99)
22 3bid_A UPF0339 protein NMB1088 31.9 17 0.00057 24.9 1.2 24 124-147 5-29 (64)
23 3noy_A 4-hydroxy-3-methylbut-2 31.9 16 0.00054 32.9 1.4 22 101-122 187-208 (366)
24 2dmx_A DNAJ homolog subfamily 30.5 25 0.00086 24.0 1.9 26 90-115 33-65 (92)
25 4g9p_A 4-hydroxy-3-methylbut-2 30.4 17 0.00059 33.1 1.3 25 98-123 204-228 (406)
26 1u7n_A Fatty acid/phospholipid 29.6 18 0.00063 30.7 1.3 35 98-138 188-228 (336)
27 3ic7_A Putative transcriptiona 29.6 17 0.00057 26.4 0.9 40 86-136 37-76 (126)
28 1yxo_A 4-hydroxythreonine-4-ph 27.9 10 0.00036 33.2 -0.5 37 100-136 219-261 (328)
29 2ctr_A DNAJ homolog subfamily 27.3 30 0.001 23.6 1.8 26 90-115 31-61 (88)
30 2l6l_A DNAJ homolog subfamily 27.3 26 0.0009 26.2 1.7 12 104-115 60-71 (155)
31 2hi1_A 4-hydroxythreonine-4-ph 26.7 10 0.00035 33.3 -0.8 52 85-136 192-267 (330)
32 1faf_A Large T antigen; J doma 26.7 31 0.001 23.5 1.8 26 90-115 37-64 (79)
33 1vi1_A Fatty acid/phospholipid 26.0 19 0.00066 30.9 0.8 35 98-138 186-226 (345)
34 3lxy_A 4-hydroxythreonine-4-ph 25.8 15 0.00051 32.3 0.1 37 100-136 224-266 (334)
35 3hho_A CO-chaperone protein HS 25.5 33 0.0011 26.6 2.0 12 104-115 55-66 (174)
36 1lu9_A Methylene tetrahydromet 25.3 35 0.0012 27.3 2.1 61 59-119 6-87 (287)
37 2ej7_A HCG3 gene; HCG3 protein 25.3 22 0.00077 23.6 0.9 12 104-115 54-65 (82)
38 1q1h_A TFE, transcription fact 24.9 38 0.0013 23.1 2.0 39 75-118 22-62 (110)
39 3bvo_A CO-chaperone protein HS 24.6 33 0.0011 27.6 1.9 12 104-115 94-105 (207)
40 2guz_A Mitochondrial import in 24.4 38 0.0013 22.4 1.9 27 90-116 39-67 (71)
41 2qsa_A DNAJ homolog DNJ-2; J-d 24.1 34 0.0012 24.1 1.7 26 90-115 40-74 (109)
42 2r9f_A Calpain-1 catalytic sub 23.8 23 0.00079 30.3 0.9 32 119-150 110-145 (339)
43 2ctp_A DNAJ homolog subfamily 23.7 21 0.00073 23.6 0.5 12 104-115 50-61 (78)
44 3bwg_A Uncharacterized HTH-typ 23.4 68 0.0023 25.3 3.5 42 84-136 29-70 (239)
45 2ctq_A DNAJ homolog subfamily 22.9 36 0.0012 24.3 1.7 26 90-115 44-75 (112)
46 2och_A Hypothetical protein DN 22.8 39 0.0013 22.0 1.7 26 90-115 32-60 (73)
47 3zqs_A E3 ubiquitin-protein li 22.7 69 0.0024 26.0 3.5 45 44-96 117-161 (186)
48 2nqa_A Calpain 8; calpain, cal 22.2 25 0.00084 29.8 0.7 32 119-150 105-140 (326)
49 2wv0_A YVOA, HTH-type transcri 22.0 75 0.0025 25.2 3.5 42 84-136 34-75 (243)
50 3uo3_A J-type CO-chaperone JAC 21.8 50 0.0017 26.0 2.4 24 92-115 44-70 (181)
51 2cug_A Mkiaa0962 protein; DNAJ 21.7 38 0.0013 23.0 1.5 26 90-115 41-71 (88)
52 3edp_A LIN2111 protein; APC883 20.2 55 0.0019 25.9 2.4 42 84-136 33-74 (236)
No 1
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=95.84 E-value=0.0081 Score=48.33 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030267 74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~ 139 (180)
+++...+-|.|.|...||+++ |. -++.++.-++..+|....++|+-+.+ ++++.|+|.|+|+++|.
T Consensus 91 ~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~ 163 (240)
T 1xff_A 91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDS 163 (240)
T ss_dssp TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEET
T ss_pred CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEec
Confidence 789999999999999999876 32 24445555556677766555542222 68999999999999984
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=95.53 E-value=0.013 Score=52.74 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=49.9
Q ss_pred cceeEeecccccChHHHHHhhCC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecchhh
Q 030267 74 DEIFCLFEGALDNLGSLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESL 143 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~~~ 143 (180)
.++.++|-|.|.|-..||++++- -++.++.-+++++|... | .++++.|+|.|||++++.++.+
T Consensus 69 ~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~~---g----~~~~~~l~G~fA~~i~d~~~l~ 132 (513)
T 1jgt_A 69 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERY---D----LHAFRLVNGRFATVVRTGDRVL 132 (513)
T ss_dssp SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHH---G----GGGGGTCCEEEEEEEEETTEEE
T ss_pred CCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHHH---h----HHhHhhcCeeEEEEEEECCEEE
Confidence 57999999999999999999742 24555555678888764 3 4699999999999999976533
No 3
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=94.49 E-value=0.17 Score=45.88 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=64.8
Q ss_pred CCCCcEEEEeCCceEEEEecCCC----CCccccccccccceeEeecccccChHHHHHhhCC---cccccceeehHHHHHH
Q 030267 40 TNSSAVSVQVGDNVTLAYTHQNE----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKA 112 (180)
Q Consensus 40 ~~p~avsv~~G~~~~LAYs~~~~----~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~lVIEAYRT 112 (180)
.=|++.-+-..+...|+.+.-.. .--||= ...-..+.++|-|.|.|-..||+++.- -++.++.-+++.+|..
T Consensus 30 RGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~ 108 (553)
T 1ct9_A 30 RGPDWSGIYASDNAILAHERLSIVDVNAGAQPL-YNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE 108 (553)
T ss_dssp GCBTEEEEEECSSEEEEEEECCCSCTTTCCSSE-ECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH
T ss_pred cCCCcccEEEECCEEEEEEeeeeeCCCCCCCCe-EeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHH
Confidence 44677777776667777763211 112331 112235889999999999999998742 2344444566788875
Q ss_pred hHhcCCCCcccccccccCceEEEEEec--chhhhh
Q 030267 113 LRDRAPYPPNHVVGHLSGTNLVRFLFI--GESLLM 145 (180)
Q Consensus 113 LRDRgPYPAdQVVkdL~G~Faf~~~~~--g~~~~~ 145 (180)
- | .++++.|+|.|||++++. +..++.
T Consensus 109 ~---g----~~~l~~l~G~fa~~i~d~~~~~l~~a 136 (553)
T 1ct9_A 109 K---G----PEFLDDLQGMFAFALYDSEKDAYLIG 136 (553)
T ss_dssp H---T----TTTGGGCCEEEEEEEEETTTTEEEEE
T ss_pred H---H----HHHHHhCCccEEEEEEECCCCEEEEE
Confidence 3 4 469999999999999996 444443
No 4
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=94.30 E-value=0.16 Score=46.16 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=46.5
Q ss_pred cceeEeecccccChHHHHHhh---CC---cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEec
Q 030267 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL---sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~ 139 (180)
+++...+-|.|+|...||+++ |. +.+-+|+ +...|....++|+-+.+ ++++.|+|.|+|++++.
T Consensus 91 ~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEv--i~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~ 163 (608)
T 2bpl_A 91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEV--IAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDS 163 (608)
T ss_dssp TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHH--HHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEET
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHH--HHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEec
Confidence 788999999999999999876 32 3445554 44555544444541111 58999999999999997
No 5
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=93.88 E-value=0.065 Score=48.00 Aligned_cols=60 Identities=18% Similarity=0.081 Sum_probs=46.0
Q ss_pred cceeEeecccccChH---HHHHhhCC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecch
Q 030267 74 DEIFCLFEGALDNLG---SLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGE 141 (180)
Q Consensus 74 DDIfClF~G~LeNL~---~L~qQYGL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~ 141 (180)
|.-+++. |.|.|-. .||+++.- -++.++.-+++.+|... | .++++.++|.|||++++..+
T Consensus 50 ~~~~~l~-GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~~---g----~~~l~~l~G~fa~~i~d~~~ 113 (503)
T 1q15_A 50 RGTAYLI-GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRL---G----ANALALAEGDFCFFIDEPNG 113 (503)
T ss_dssp SSEEEEE-ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHH---C----GGGGGGCCSSEEEEEECTTS
T ss_pred CCeEEEE-EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHHH---H----HHHHHHcCEEEEEEEEeCCC
Confidence 5556666 9999999 99998841 24556666778888753 4 46999999999999999744
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=89.67 E-value=0.26 Score=44.11 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred ceeEeecccccChHHHHHhhC-----CcccccceeehHHHHHHh-HhcCC---CCcc------cccccccCceEEEEEec
Q 030267 75 EIFCLFEGALDNLGSLRQQYG-----LAKSANEVILVIEAYKAL-RDRAP---YPPN------HVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQYG-----LsK~aNEv~lVIEAYRTL-RDRgP---YPAd------QVVkdL~G~Faf~~~~~ 139 (180)
.+...+-|.|.|-..||++.. --++.++.-++..+|... +..|+ .+.| ++++.++|.|+|++++.
T Consensus 95 ~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~~ 174 (504)
T 1ecf_A 95 GITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMII 174 (504)
T ss_dssp CEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEET
T ss_pred CEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEEc
Confidence 488899999999999998752 234555555566677554 33343 2222 57999999999999876
Q ss_pred chhh
Q 030267 140 GESL 143 (180)
Q Consensus 140 g~~~ 143 (180)
|..+
T Consensus 175 ~~~l 178 (504)
T 1ecf_A 175 GHGM 178 (504)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 5433
No 7
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=88.65 E-value=0.12 Score=45.49 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=46.5
Q ss_pred cceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCc-ccccccccCceEEEEEecchhhh
Q 030267 74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP-NHVVGHLSGTNLVRFLFIGESLL 144 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPA-dQVVkdL~G~Faf~~~~~g~~~~ 144 (180)
.++-..+-|.|.|-..||++. |. -++.++.-++..+|....++.++.| .++++.++|.|+|++++-+..+.
T Consensus 95 g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d~~~l~~ 170 (459)
T 1ao0_A 95 GSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIV 170 (459)
T ss_dssp CCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECSSEEEE
T ss_pred CcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEeCCEEEE
Confidence 458889999999999999986 32 2344444455566653221111111 36899999999999998544433
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=63.11 E-value=1.5 Score=36.59 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=42.8
Q ss_pred cceeEeecccccChHHHHHhh---C--------Ccccccceee-hHHHHHHhHhcCCCCcc---cccccccCc-------
Q 030267 74 DEIFCLFEGALDNLGSLRQQY---G--------LAKSANEVIL-VIEAYKALRDRAPYPPN---HVVGHLSGT------- 131 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQY---G--------LsK~aNEv~l-VIEAYRTLRDRgPYPAd---QVVkdL~G~------- 131 (180)
.++...+-|.|.|-..||++. | -+.+-.|+++ .|..+. .+.. |.+ ++++.++|.
T Consensus 107 g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~--~~~~--~~~al~~~l~~l~G~~~~~g~~ 182 (274)
T 3mdn_A 107 RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEG--LEHD--PHGALARAIARLEGLSRAHGTT 182 (274)
T ss_dssp TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTT--TTTC--HHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhh--hcCC--HHHHHHHHHHHHHhHHhhcCcc
Confidence 678889999999999998753 2 2456677776 443331 1211 222 578889887
Q ss_pred ----eEEEEEecchhhh
Q 030267 132 ----NLVRFLFIGESLL 144 (180)
Q Consensus 132 ----Faf~~~~~g~~~~ 144 (180)
|+|++.+ |+.++
T Consensus 183 ~~~a~~~~~~d-~~~l~ 198 (274)
T 3mdn_A 183 PHMRLSAAFSD-GQTLY 198 (274)
T ss_dssp SSEEEEEEEEC-SSCEE
T ss_pred cCceEEEEEEc-CCEEE
Confidence 7777765 54443
No 9
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=59.71 E-value=5.1 Score=29.19 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=35.2
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEE
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFL 137 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~ 137 (180)
|-+...|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||.-
T Consensus 38 LPser~La~~~gVSr~t-----VReAl~~L~~eG------lv~~~~g~G~~V~~ 80 (134)
T 4ham_A 38 ILSIREFASRIGVNPNT-----VSKAYQELERQE------VIITVKGKGTFIAN 80 (134)
T ss_dssp ECCHHHHHHHHTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEECC
T ss_pred CccHHHHHHHHCCCHHH-----HHHHHHHHHHCC------cEEEEcCcEEEEeC
Confidence 44667899999999987 899999999987 67777777777743
No 10
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=47.44 E-value=11 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=33.7
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEE
Q 030267 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFL 137 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~ 137 (180)
-+...|.++||.|+++ |-|||+.|.+.| +|.--.|+=+|+--
T Consensus 34 Ps~~~La~~~~vSr~t-----vr~al~~L~~~G------li~~~~~~G~~V~~ 75 (113)
T 3tqn_A 34 PSIRKISTEYQINPLT-----VSKAYQSLLDDN------VIEKRRGLGMLVKA 75 (113)
T ss_dssp CCHHHHHHHHTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEECT
T ss_pred cCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------CEEEecCCeEEEeC
Confidence 3788999999999875 789999999987 56666777666543
No 11
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=46.29 E-value=9.8 Score=27.74 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEE
Q 030267 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFL 137 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~ 137 (180)
-+...|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||.-
T Consensus 36 Pse~~La~~~~vSr~t-----vr~Al~~L~~~G------li~~~~g~G~~V~~ 77 (126)
T 3by6_A 36 PSVRETALQEKINPNT-----VAKAYKELEAQK------VIRTIPGKGTFITG 77 (126)
T ss_dssp CCHHHHHHHHTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEECS
T ss_pred cCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------CEEEecCCeEEEcc
Confidence 4889999999999875 889999999988 67777788777653
No 12
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=42.93 E-value=12 Score=26.57 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=26.4
Q ss_pred cccChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030267 83 ALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 83 ~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
.|-....|.++||.|+++ |-||++.|.+.|
T Consensus 42 ~lps~~eLa~~lgVSr~t-----Vr~al~~L~~~G 71 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSV-----IVNALRKLESAG 71 (102)
T ss_dssp EEECHHHHHHHHTCCHHH-----HHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHH-----HHHHHHHHHHCC
Confidence 345889999999999876 889999999988
No 13
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=42.86 E-value=5.6 Score=30.01 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.2
Q ss_pred cceeEeecccccChHHHHHhhCCc
Q 030267 74 DEIFCLFEGALDNLGSLRQQYGLA 97 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYGLs 97 (180)
..|+.-|.|. |+..|.++||||
T Consensus 84 ~~I~~~f~G~--n~~eLArkYgLS 105 (129)
T 1rr7_A 84 LRIWNDFNGR--NVSELTTRYGVT 105 (129)
T ss_dssp HHHHHHCCSS--CHHHHHHHHTCC
T ss_pred HHHHHHhCCC--CHHHHHHHHCCC
Confidence 5677788885 999999999998
No 14
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=42.05 E-value=10 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=31.6
Q ss_pred cChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEE
Q 030267 85 DNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVR 135 (180)
Q Consensus 85 eNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~ 135 (180)
-....|.++||.|+++ |-+|++.|++.| +|.--.|+-.|+
T Consensus 36 ps~~eLa~~~~vSr~t-----vr~al~~L~~~G------li~~~~g~G~~v 75 (102)
T 1v4r_A 36 PSVADIRAQFGVAAKT-----VSRALAVLKSEG------LVSSRGALGTVV 75 (102)
T ss_dssp CCHHHHHHHSSSCTTH-----HHHHTTTTTTSS------CCEEETTTEEES
T ss_pred cCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------CEEEeCCCeEEE
Confidence 3889999999999876 889999999988 566566664444
No 15
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=39.46 E-value=27 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=24.4
Q ss_pred ehHHHHHHhHhcCCCCccccccc-----ccCceEEEEEecchhh
Q 030267 105 LVIEAYKALRDRAPYPPNHVVGH-----LSGTNLVRFLFIGESL 143 (180)
Q Consensus 105 lVIEAYRTLRDRgPYPAdQVVkd-----L~G~Faf~~~~~g~~~ 143 (180)
+.-..||-||+||-+|-.-|... -.-+|-+.++.-++.+
T Consensus 24 l~y~VYkDLR~RG~~vk~rvY~~~~pg~~hs~ylV~vl~e~~~i 67 (116)
T 2zyz_A 24 LQEQVFKDLKSRGFKIIEQLDDKIFIAEKKERYLFYVMVEGVEV 67 (116)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETTEEEEESSSEEEEEEEETTCCB
T ss_pred eeeHHHHHHHHCCCcccEEEcCCCCCCCCcccEEEEEecCCCcc
Confidence 44578999999999887733332 1224555555556555
No 16
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=39.24 E-value=17 Score=26.65 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=35.1
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEe
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLF 138 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~ 138 (180)
|-....|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||.-.
T Consensus 28 LPse~~La~~~gvSr~t-----Vr~Al~~L~~~G------li~~~~g~G~~V~~~ 71 (129)
T 2ek5_A 28 VPSTNELAAFHRINPAT-----ARNGLTLLVEAG------ILYKKRGIGMFVSAQ 71 (129)
T ss_dssp BCCHHHHHHHTTCCHHH-----HHHHHHHHHTTT------SEEEETTTEEEECTT
T ss_pred CcCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------cEEEecCCEEEEecC
Confidence 33678999999999875 889999999988 677777876666543
No 17
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=38.61 E-value=15 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.1
Q ss_pred ehHHHHHHhHhcCCCC
Q 030267 105 LVIEAYKALRDRAPYP 120 (180)
Q Consensus 105 lVIEAYRTLRDRgPYP 120 (180)
=+-||||.|+.+|+-|
T Consensus 74 HireA~rrl~~~g~~p 89 (89)
T 1bh9_B 74 HMREAVRRLKSKGQIP 89 (89)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3789999999999876
No 18
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=38.50 E-value=19 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=33.9
Q ss_pred ChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEE
Q 030267 86 NLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFL 137 (180)
Q Consensus 86 NL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~ 137 (180)
....|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||.-
T Consensus 39 s~~~La~~~~vSr~t-----vr~Al~~L~~~G------~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 39 SVREMGVKLAVNPNT-----VSRAYQELERAG------YIYAKRGMGSFVTS 79 (125)
T ss_dssp CHHHHHHHHTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEECC
T ss_pred CHHHHHHHHCcCHHH-----HHHHHHHHHHCC------eEEEecCCEEEEec
Confidence 677999999999865 899999999887 67777787777654
No 19
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Probab=38.34 E-value=15 Score=30.08 Aligned_cols=28 Identities=14% Similarity=-0.076 Sum_probs=20.4
Q ss_pred ehHHHHHHhHhcCCCCcccccccccCceEEEEEe
Q 030267 105 LVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLF 138 (180)
Q Consensus 105 lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~ 138 (180)
.---+||-||+||=|+=.- .+|.|++|.
T Consensus 104 ~kY~VYkDLR~RGy~Vk~G------~KfdflVY~ 131 (190)
T 3ajv_A 104 DTALVYFDLRRKGRKPLVG------VRRGTLVYE 131 (190)
T ss_dssp HHHHHHHHHHHTTCCCEEC------SSTTEEEEE
T ss_pred eEEEeHHHHHhCCCEEeec------CCCCeEEEc
Confidence 3445899999999987664 345677775
No 20
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.59 E-value=22 Score=23.52 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=16.0
Q ss_pred HHHhhCCccccc-----c-eeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN-----E-VILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN-----E-v~lVIEAYRTLRD 115 (180)
|.++|+--|..+ | -..|.|||.+|.|
T Consensus 31 l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 31 LAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62 (79)
T ss_dssp HHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 445555544432 2 2467799999987
No 21
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.16 E-value=17 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=17.1
Q ss_pred HHHHhhCCccccc-----c-eeehHHHHHHhHh
Q 030267 89 SLRQQYGLAKSAN-----E-VILVIEAYKALRD 115 (180)
Q Consensus 89 ~L~qQYGLsK~aN-----E-v~lVIEAYRTLRD 115 (180)
.|.++|+--|..+ | -..|.|||.+|.|
T Consensus 40 ~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d 72 (99)
T 2yua_A 40 RQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS 72 (99)
T ss_dssp HHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3556666655543 2 2356789999976
No 22
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=31.94 E-value=17 Score=24.89 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=20.2
Q ss_pred ccccccCceEEEEEec-chhhhhcc
Q 030267 124 VVGHLSGTNLVRFLFI-GESLLMDM 147 (180)
Q Consensus 124 VVkdL~G~Faf~~~~~-g~~~~~d~ 147 (180)
+-++-+|+|-|++... |+++++..
T Consensus 5 i~~~~~G~frfrLka~NGevI~sSe 29 (64)
T 3bid_A 5 IYKDAKGEYRWRLKAANHEIIAQGE 29 (64)
T ss_dssp EEECTTSCEEEEEECTTSCEEEECC
T ss_pred EEECCCCCEEEEEEeCCCCEEEECC
Confidence 5678899999999997 99988654
No 23
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=31.94 E-value=16 Score=32.90 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.9
Q ss_pred cceeehHHHHHHhHhcCCCCcc
Q 030267 101 NEVILVIEAYKALRDRAPYPPN 122 (180)
Q Consensus 101 NEv~lVIEAYRTLRDRgPYPAd 122 (180)
..+...|+|||-|++|-+||=+
T Consensus 187 S~v~~~i~ayr~la~~~dyPLH 208 (366)
T 3noy_A 187 SDVLQNVRANLIFAERTDVPLH 208 (366)
T ss_dssp SSHHHHHHHHHHHHHHCCCCEE
T ss_pred CChHHHHHHHHHHHhccCCCEE
Confidence 4567789999999999999964
No 24
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.45 E-value=25 Score=24.01 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=16.1
Q ss_pred HHHhhCCcccccc-------eeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSANE-------VILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aNE-------v~lVIEAYRTLRD 115 (180)
|.++|+--|..++ -..|.|||.+|.|
T Consensus 33 l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d 65 (92)
T 2dmx_A 33 LALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65 (92)
T ss_dssp HHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence 4455665554331 2467789999986
No 25
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=30.37 E-value=17 Score=33.05 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.1
Q ss_pred ccccceeehHHHHHHhHhcCCCCccc
Q 030267 98 KSANEVILVIEAYKALRDRAPYPPNH 123 (180)
Q Consensus 98 K~aNEv~lVIEAYRTLRDRgPYPAdQ 123 (180)
|.. .+...|+|||-|..|-+||=+=
T Consensus 204 KaS-dv~~~i~aYr~la~~~dyPLHL 228 (406)
T 4g9p_A 204 KVS-KARDLVWVYRELARRTQAPLHL 228 (406)
T ss_dssp ECS-SHHHHHHHHHHHHHHCCSCBEE
T ss_pred ecC-CHHHHHHHHHHHHHhCCCCcee
Confidence 444 5889999999999999999654
No 26
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=29.63 E-value=18 Score=30.73 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=25.4
Q ss_pred ccccceeehHHHHHHhHhc------CCCCcccccccccCceEEEEEe
Q 030267 98 KSANEVILVIEAYKALRDR------APYPPNHVVGHLSGTNLVRFLF 138 (180)
Q Consensus 98 K~aNEv~lVIEAYRTLRDR------gPYPAdQVVkdL~G~Faf~~~~ 138 (180)
|+..| +.|||+-||.+ ||.|+|.++. |++-.+|-+
T Consensus 188 ~g~e~---v~~A~~ll~~~~~i~~~G~ve~d~~~~---g~~DvvV~d 228 (336)
T 1u7n_A 188 KGSEL---TKKAFELLAADETINFVGNVEARELLN---GVADVVVTD 228 (336)
T ss_dssp -CCHH---HHHHHHHHHHCTTSCEEEEECGGGGGG---CSCSEEECC
T ss_pred CCCHH---HHHHHHHHhcCCCCeEEeccCCCcccc---CCCCEEEeC
Confidence 55544 79999999987 7788887765 777666543
No 27
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=29.59 E-value=17 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=31.8
Q ss_pred ChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEE
Q 030267 86 NLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRF 136 (180)
Q Consensus 86 NL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~ 136 (180)
....|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||-
T Consensus 37 s~~~La~~~~vSr~t-----vr~Al~~L~~~G------~i~~~~~~G~~V~ 76 (126)
T 3ic7_A 37 SVREYASIVEVNANT-----VMRSYEYLQSQE------VIYNKRGIGFFVA 76 (126)
T ss_dssp CTTTTTTCC-CCSGG-----GHHHHHHHHTTT------SEEEETTTEEEEC
T ss_pred CHHHHHHHHCcCHHH-----HHHHHHHHHHCC------cEEEEcCCccEEc
Confidence 677899999999976 889999999887 5666677766664
No 28
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=27.91 E-value=10 Score=33.23 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=27.9
Q ss_pred ccceeehHHHHHHhHhc-----CCCCccccccc-ccCceEEEE
Q 030267 100 ANEVILVIEAYKALRDR-----APYPPNHVVGH-LSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-----gPYPAdQVVkd-L~G~Faf~~ 136 (180)
.-|.-+++-|-+.||.+ ||||||-+-.. ..|+|--++
T Consensus 219 ~EE~~iI~Pai~~~r~~Gi~~~GP~paDT~F~~~~~~~~D~vl 261 (328)
T 1yxo_A 219 REEIEVIEPCLERLRGEGLDLIGPLPADTLFTPKHLEHCDAVL 261 (328)
T ss_dssp SHHHHTHHHHHHHHHTTTCEEEEEECHHHHTSHHHHTTCSEEE
T ss_pred HhHHHHHHHHHHHHHHCCCceeCCCCchhhcccccccCCCEEE
Confidence 45667999999999986 79999986543 456775554
No 29
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30 E-value=30 Score=23.58 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=16.0
Q ss_pred HHHhhCCccccc-----ceeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN-----EVILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN-----Ev~lVIEAYRTLRD 115 (180)
|.++|+--|..+ .-..|.|||.+|.|
T Consensus 31 l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 31 LAMKYHPDKNKSPDAEAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHTCTTTCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCChHHHHHHHHHHHHHHHHCC
Confidence 444555555433 22357799999987
No 30
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=27.26 E-value=26 Score=26.16 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.2
Q ss_pred eehHHHHHHhHh
Q 030267 104 ILVIEAYKALRD 115 (180)
Q Consensus 104 ~lVIEAYRTLRD 115 (180)
..|-|||++|+|
T Consensus 60 ~~i~~Ay~~L~d 71 (155)
T 2l6l_A 60 IEIDQAWKILGN 71 (155)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHcCC
Confidence 478899999986
No 31
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=26.70 E-value=10 Score=33.31 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=36.4
Q ss_pred cChHHHHHhhCCcc------------------cccceeehHHHHHHhHhc-----CCCCccccccc-ccCceEEEE
Q 030267 85 DNLGSLRQQYGLAK------------------SANEVILVIEAYKALRDR-----APYPPNHVVGH-LSGTNLVRF 136 (180)
Q Consensus 85 eNL~~L~qQYGLsK------------------~aNEv~lVIEAYRTLRDR-----gPYPAdQVVkd-L~G~Faf~~ 136 (180)
..+..|++.+|..+ +.-|.-+++-|-+.+|.+ ||||||-+-.. ..|+|--++
T Consensus 192 ~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r~~Gi~~~GP~paDT~F~~~~~~~~D~vl 267 (330)
T 2hi1_A 192 GIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVV 267 (330)
T ss_dssp HHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHHHTTTCEEEEEECHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHHHHCCCceeCCCCchhhccccccccCCEEE
Confidence 33444888787543 235667999999999986 79999986543 456775554
No 32
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=26.69 E-value=31 Score=23.45 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=15.8
Q ss_pred HHHhhCCccccccee--ehHHHHHHhHh
Q 030267 90 LRQQYGLAKSANEVI--LVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aNEv~--lVIEAYRTLRD 115 (180)
|.++|+--|+.++.. -|-|||.+|+|
T Consensus 37 la~~~HPDk~~~~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 37 QSLLLHPDKGGSHALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCCCCCHHHHHHHHHHHHHHhh
Confidence 445555555444433 46788988887
No 33
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=25.99 E-value=19 Score=30.87 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=26.2
Q ss_pred ccccceeehHHHHHHhHhc------CCCCcccccccccCceEEEEEe
Q 030267 98 KSANEVILVIEAYKALRDR------APYPPNHVVGHLSGTNLVRFLF 138 (180)
Q Consensus 98 K~aNEv~lVIEAYRTLRDR------gPYPAdQVVkdL~G~Faf~~~~ 138 (180)
|+..| +.||++-||.+ ||.|+|.++. |++-.+|-+
T Consensus 186 ~g~e~---i~~A~~ll~~~~~i~~~G~ve~d~~~~---G~aDVvV~d 226 (345)
T 1vi1_A 186 KGNEL---TKQTFQILKETANINFIGNVEARDLLD---DVADVVVTD 226 (345)
T ss_dssp CSCHH---HHHHHHHHHSCTTSEEEEEEEGGGGGG---TSCSEEECC
T ss_pred CCCHH---HHHHHHHHhcCCCCeEEeccCCCcccc---CCCCEEEeC
Confidence 55544 88999999987 7788887765 777666643
No 34
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=25.78 E-value=15 Score=32.26 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.3
Q ss_pred ccceeehHHHHHHhHhc-----CCCCcccccc-cccCceEEEE
Q 030267 100 ANEVILVIEAYKALRDR-----APYPPNHVVG-HLSGTNLVRF 136 (180)
Q Consensus 100 aNEv~lVIEAYRTLRDR-----gPYPAdQVVk-dL~G~Faf~~ 136 (180)
.-|.-+++.|.+.||++ ||||||-+.. ...|.|--++
T Consensus 224 ~EE~~iI~PAi~~lr~~Gi~~~GP~paDt~F~~~~~~~~D~vl 266 (334)
T 3lxy_A 224 HEEIDTIIPALNTLRQQGINLIGPLPADTLFQPKYLQHADAVL 266 (334)
T ss_dssp SHHHHTHHHHHHHHHHTTCCEEEEECHHHHTSHHHHTTCSEEE
T ss_pred chhHHHHHHHHHHHHHCCCceeCCCChHHhcChhhhccCCEEE
Confidence 35666899999999997 5999999653 4567776655
No 35
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=25.53 E-value=33 Score=26.63 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.6
Q ss_pred eehHHHHHHhHh
Q 030267 104 ILVIEAYKALRD 115 (180)
Q Consensus 104 ~lVIEAYRTLRD 115 (180)
..|-|||+||+|
T Consensus 55 ~~In~AY~vL~d 66 (174)
T 3hho_A 55 AQINDAYQTLKD 66 (174)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 568899999998
No 36
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=25.27 E-value=35 Score=27.25 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred cCCCCCccccccc-------cccceeEeecccccChHHHHHhh-------CCcccc-----cceeehHHHHHHhHhc--C
Q 030267 59 HQNESPLRQRSFA-------VKDEIFCLFEGALDNLGSLRQQY-------GLAKSA-----NEVILVIEAYKALRDR--A 117 (180)
Q Consensus 59 ~~~~~~l~pR~F~-------~~DDIfClF~G~LeNL~~L~qQY-------GLsK~a-----NEv~lVIEAYRTLRDR--g 117 (180)
|+..+.+|..-|. ++|.+|..|.=..+++..+-+.. |++.+. ..+..+++.-..++.+ |
T Consensus 6 hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~~~~g 85 (287)
T 1lu9_A 6 FQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFG 85 (287)
T ss_dssp EEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHHHCBT
T ss_pred EEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHHhcCC
Confidence 4555566776676 58999999999999999998874 222232 2355566666666655 6
Q ss_pred CC
Q 030267 118 PY 119 (180)
Q Consensus 118 PY 119 (180)
|.
T Consensus 86 av 87 (287)
T 1lu9_A 86 PF 87 (287)
T ss_dssp TB
T ss_pred Ce
Confidence 53
No 37
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.26 E-value=22 Score=23.61 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=9.4
Q ss_pred eehHHHHHHhHh
Q 030267 104 ILVIEAYKALRD 115 (180)
Q Consensus 104 ~lVIEAYRTLRD 115 (180)
..|.|||.+|.|
T Consensus 54 ~~i~~Ay~~L~d 65 (82)
T 2ej7_A 54 KQVAEAYEVLSD 65 (82)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHCC
Confidence 357789999887
No 38
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.89 E-value=38 Score=23.11 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=30.3
Q ss_pred ceeEee--cccccChHHHHHhhCCcccccceeehHHHHHHhHhcCC
Q 030267 75 EIFCLF--EGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118 (180)
Q Consensus 75 DIfClF--~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgP 118 (180)
+|.+.+ .|.-=+...|.+++|+|+++ |-++.++|.+.|=
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~t-----V~~~L~~L~~~Gl 62 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVND-----VRKKLNLLEEQGF 62 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHH-----HHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHH-----HHHHHHHHHHCCC
Confidence 344443 46234889999999999987 8999999999883
No 39
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.57 E-value=33 Score=27.56 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=10.7
Q ss_pred eehHHHHHHhHh
Q 030267 104 ILVIEAYKALRD 115 (180)
Q Consensus 104 ~lVIEAYRTLRD 115 (180)
..|-|||+||+|
T Consensus 94 ~~In~AY~vLsd 105 (207)
T 3bvo_A 94 TLVNDAYKTLLA 105 (207)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC
Confidence 578999999997
No 40
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.43 E-value=38 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=14.2
Q ss_pred HHHhhCCcccccce--eehHHHHHHhHhc
Q 030267 90 LRQQYGLAKSANEV--ILVIEAYKALRDR 116 (180)
Q Consensus 90 L~qQYGLsK~aNEv--~lVIEAYRTLRDR 116 (180)
|.++|+--|+.++. .-|.|||.+|.|.
T Consensus 39 l~~~~HPDk~g~~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 39 IMLANHPDKGGSPFLATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 33444444433332 3456788887774
No 41
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=24.10 E-value=34 Score=24.14 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHhhCCccccc---------ceeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN---------EVILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN---------Ev~lVIEAYRTLRD 115 (180)
|.++|+--|..+ .-..|.|||.+|+|
T Consensus 40 l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d 74 (109)
T 2qsa_A 40 LARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74 (109)
T ss_dssp HHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC
Confidence 445556655543 23467899999987
No 42
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=23.76 E-value=23 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCcccccc-cccCceEEEEEecch---hhhhcchhH
Q 030267 119 YPPNHVVG-HLSGTNLVRFLFIGE---SLLMDMLPL 150 (180)
Q Consensus 119 YPAdQVVk-dL~G~Faf~~~~~g~---~~~~d~l~~ 150 (180)
+|.+|-.+ .-.|.|.|+|+.-|+ |+|-|.||+
T Consensus 110 ~p~~q~~~~~~~G~y~vr~~~~G~W~~VvVDD~LP~ 145 (339)
T 2r9f_A 110 VPYGQSFQEGYAGIFHFQLWQFGEWVDVVVDDLLPT 145 (339)
T ss_dssp SCSCCCSSTTCCSEEEEEEEETTEEEEEEEESCEEE
T ss_pred EeccccccccCCceEEEEEeeCCEEEEEEEcCCCcc
Confidence 46665433 356999999999986 667777775
No 43
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.66 E-value=21 Score=23.56 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=9.3
Q ss_pred eehHHHHHHhHh
Q 030267 104 ILVIEAYKALRD 115 (180)
Q Consensus 104 ~lVIEAYRTLRD 115 (180)
..|.|||.+|.|
T Consensus 50 ~~i~~Ay~~L~d 61 (78)
T 2ctp_A 50 KAIGTAYAVLSN 61 (78)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC
Confidence 356789999877
No 44
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.36 E-value=68 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=33.8
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEE
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRF 136 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~ 136 (180)
|-....|.++||.|++| |-+|++.|.+.| +|.--.|+=+||.
T Consensus 29 lPse~~La~~~~vSr~t-----vr~Al~~L~~~g------~i~~~~g~G~~V~ 70 (239)
T 3bwg_A 29 LPVLETLMAQFEVSKST-----ITKSLELLEQKG------AIFQVRGSGIFVR 70 (239)
T ss_dssp CCCHHHHHHHTTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEEC
T ss_pred CcCHHHHHHHHCCCHHH-----HHHHHHHHHHCC------cEEEeCCceEEEe
Confidence 44778999999999877 889999999987 5666677766663
No 45
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.90 E-value=36 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=15.0
Q ss_pred HHHhhCCccccc------ceeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN------EVILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN------Ev~lVIEAYRTLRD 115 (180)
|.++|+--|..+ .-..|.|||.+|.|
T Consensus 44 l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 75 (112)
T 2ctq_A 44 RALECHPDKHPENPKAVETFQKLQKAKEILTN 75 (112)
T ss_dssp HHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 445555545442 12356788888876
No 46
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=22.76 E-value=39 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=14.4
Q ss_pred HHHhhCCccccc--c-eeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN--E-VILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN--E-v~lVIEAYRTLRD 115 (180)
|.++|+--|..+ | -..|.|||.+|.|
T Consensus 32 l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d 60 (73)
T 2och_A 32 MALKFHPDKNPDGAEQFKQISQAYEVLSD 60 (73)
T ss_dssp HHHHTCTTTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCcCCCcCHHHHHHHHHHHHHHHCC
Confidence 344455444332 2 2356688888876
No 47
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=22.73 E-value=69 Score=26.02 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.4
Q ss_pred cEEEEeCCceEEEEecCCCCCccccccccccceeEeecccccChHHHHHhhCC
Q 030267 44 AVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL 96 (180)
Q Consensus 44 avsv~~G~~~~LAYs~~~~~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL 96 (180)
.=-+.+|+.+.|..+. +|.+||++-. |-|.|.=+.+..||.++.-
T Consensus 117 ~RRIalg~~vsl~i~v---dP~~P~~lPe-----~~FlG~~~~v~~lr~~~~~ 161 (186)
T 3zqs_A 117 ARRIALGNNVSINIEV---DPRHPTMLPE-----CFFLGADHVVKPLGIKLSR 161 (186)
T ss_dssp EEEEEEETTEEEEEEC---CTTSTTSCCE-----EEEEECHHHHHHHHHHHHH
T ss_pred EEEEEECCCcEEEEEE---CCCCCCcCCc-----eEEECChHHHHHHHHHHhh
Confidence 4457789999999988 6778887653 9999999999999998864
No 48
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=22.17 E-value=25 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCcccccc-cccCceEEEEEecch---hhhhcchhH
Q 030267 119 YPPNHVVG-HLSGTNLVRFLFIGE---SLLMDMLPL 150 (180)
Q Consensus 119 YPAdQVVk-dL~G~Faf~~~~~g~---~~~~d~l~~ 150 (180)
+|.+|-.+ .-.|.|.|+++.-|+ |+|-|.||+
T Consensus 105 ~p~~q~~~~~~~G~y~vr~~~~G~w~~VvVDD~lP~ 140 (326)
T 2nqa_A 105 VPRDQDFQENYAGIFHFQFWQYGEWVEVVIDDRLPT 140 (326)
T ss_dssp SCSSCCSSTTCSSEEEEEEECSSSEEEEEEECCEEE
T ss_pred cCcCcCccccCCceEEEEEEECCEEEEEEEeCcCcc
Confidence 46665433 357999999999887 667777775
No 49
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=22.02 E-value=75 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=34.3
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEE
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRF 136 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~ 136 (180)
|-....|.++||.|++| |-+|++.|.+.| +|.--.|+=+||.
T Consensus 34 lPse~~La~~~~vSr~t-----vr~Al~~L~~~G------~i~~~~g~G~~V~ 75 (243)
T 2wv0_A 34 LPSEREYAEQFGISRMT-----VRQALSNLVNEG------LLYRLKGRGTFVS 75 (243)
T ss_dssp CCCHHHHHHHHTCCHHH-----HHHHHHHHHHTT------SEEECTTSCEEEC
T ss_pred CcCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------cEEEeCCCeEEEe
Confidence 44778999999999877 889999999988 5666677766664
No 50
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=21.78 E-value=50 Score=25.98 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=16.1
Q ss_pred HhhCCcccc---cceeehHHHHHHhHh
Q 030267 92 QQYGLAKSA---NEVILVIEAYKALRD 115 (180)
Q Consensus 92 qQYGLsK~a---NEv~lVIEAYRTLRD 115 (180)
++|+--|.. ..-..|-|||+||+|
T Consensus 44 ~~~HPDk~~~a~~~f~~i~~AY~vL~d 70 (181)
T 3uo3_A 44 AQHHPDMAQQGSEQSSTLNQAYHTLKD 70 (181)
T ss_dssp HTCCTTSCCSCSSGGGSHHHHHHHHHS
T ss_pred HHhCcCCCccHHHHHHHHHHHHHHHcC
Confidence 344554532 344568999999998
No 51
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=21.74 E-value=38 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=15.6
Q ss_pred HHHhhCCccccc----c-eeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSAN----E-VILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aN----E-v~lVIEAYRTLRD 115 (180)
|.++|+--|..+ | -..|.|||.+|.|
T Consensus 41 l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 41 LAREWHPDKNKDPGAEDRFIQISKAYEILSN 71 (88)
T ss_dssp HHHHSCTTTCCSTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCChhHHHHHHHHHHHHHHHCC
Confidence 444556555432 2 3356789999987
No 52
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.21 E-value=55 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.2
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEEE
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRF 136 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~ 136 (180)
|-.-..|.++||.|++| |-+|++.|.+.| +|.--.|+=+||.
T Consensus 33 lPse~~La~~~~vSr~t-----vr~Al~~L~~~G------~i~~~~g~G~~V~ 74 (236)
T 3edp_A 33 MPNETALQEIYSSSRTT-----IRRAVDLLVEEG------LVVRKNGVGLYVQ 74 (236)
T ss_dssp -CCHHHHHHHTTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEEC
T ss_pred CcCHHHHHHHHCcCHHH-----HHHHHHHHHHCC------CEEEECCceEEEc
Confidence 45677999999999976 899999999987 5666677766654
Done!