Query 030267
Match_columns 180
No_of_seqs 92 out of 94
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 18:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030267.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030267hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgta2 d.153.1.1 (A:4-209) be 96.4 0.0017 1.2E-07 51.1 4.7 67 70-144 63-130 (206)
2 d1ct9a2 d.153.1.1 (A:1-192) As 95.9 0.025 1.8E-06 42.8 9.4 91 42-139 32-128 (192)
3 d1q15a2 d.153.1.1 (A:2-205) be 93.4 0.043 3.2E-06 43.1 4.8 62 71-139 45-110 (204)
4 d1xffa_ d.153.1.1 (A:) Glucosa 91.6 0.14 1E-05 39.0 5.5 69 72-140 89-164 (238)
5 d1gph12 d.153.1.1 (1:1-234) Gl 91.0 0.022 1.6E-06 43.3 0.4 65 74-141 95-167 (234)
6 d1ecfa2 d.153.1.1 (A:1-249) Gl 70.2 4.9 0.00036 30.5 6.3 64 75-140 95-175 (249)
7 d1hw1a1 a.4.5.6 (A:5-78) Fatty 61.3 2.4 0.00018 27.4 2.4 30 83-117 26-55 (74)
8 d1v4ra1 a.4.5.6 (A:1-100) Tran 58.2 2.2 0.00016 28.9 1.8 41 84-135 33-73 (100)
9 d3bwga1 a.4.5.6 (A:5-82) Trans 51.2 4.5 0.00033 25.8 2.4 42 83-135 21-62 (78)
10 d1t3ta1 a.5.10.1 (A:153-220) F 49.8 1.9 0.00014 28.7 0.3 39 79-118 11-49 (68)
11 d2hs5a1 a.4.5.6 (A:25-93) Puta 46.5 4.7 0.00034 25.3 1.9 27 86-117 27-53 (69)
12 d1fafa_ a.2.3.1 (A:) Large T a 44.6 4.8 0.00035 26.6 1.8 27 90-116 37-65 (79)
13 d1fpoa1 a.2.3.1 (A:1-76) HSC20 42.9 5.8 0.00042 25.1 1.9 11 105-115 53-63 (76)
14 d1ptma_ c.77.1.3 (A:) 4-hydrox 36.7 2.9 0.00021 33.6 -0.4 38 99-136 219-262 (329)
15 d1rr7a_ a.4.1.14 (A:) Middle o 35.0 7.6 0.00056 26.3 1.6 20 76-97 60-79 (94)
16 d2cpga_ a.43.1.3 (A:) Transcri 27.7 5.3 0.00039 24.6 -0.2 32 79-111 9-40 (43)
17 d2bfwa1 c.87.1.8 (A:218-413) G 27.0 14 0.001 25.4 1.9 39 70-120 27-65 (196)
18 d1xbla_ a.2.3.1 (A:) DnaJ chap 23.5 16 0.0012 23.0 1.6 26 90-115 27-58 (75)
19 d1e0ea_ a.4.10.1 (A:) N-termin 22.4 16 0.0011 22.4 1.2 15 85-99 17-31 (46)
20 d1k6ya1 a.4.10.1 (A:1-46) N-te 22.3 16 0.0011 22.4 1.2 15 85-99 17-31 (46)
21 d1te5a_ d.153.1.1 (A:) Hypothe 21.3 9.5 0.00069 28.2 0.0 54 65-120 90-146 (253)
No 1
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=96.36 E-value=0.0017 Score=51.12 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=53.6
Q ss_pred cccccceeEeecccccChHHHHHhhCCc-ccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEecchhhh
Q 030267 70 FAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFIGESLL 144 (180)
Q Consensus 70 F~~~DDIfClF~G~LeNL~~L~qQYGLs-K~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~g~~~~ 144 (180)
+.+ ++.--+|-|.|.|-..|++++|.. ++..+.=+++++|+.. | .+-++.|+|.|+|++++..+.++
T Consensus 63 ~~~-~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~~---G----~~~l~~l~G~Fa~vi~d~~~l~l 130 (206)
T d1jgta2 63 LTG-APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERY---D----LHAFRLVNGRFATVVRTGDRVLL 130 (206)
T ss_dssp CSS-SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHH---G----GGGGGTCCEEEEEEEEETTEEEE
T ss_pred cCC-CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhhh---C----HHHHHHHHhhhheeeeecceEEE
Confidence 444 567889999999999999999995 6666666788999865 4 36899999999999998755443
No 2
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.92 E-value=0.025 Score=42.76 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCcEEEEeCCceEEEEecCCC---CCccccccccccceeEeecccccChHHHHHhhCC---cccccceeehHHHHHHhHh
Q 030267 42 SSAVSVQVGDNVTLAYTHQNE---SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKALRD 115 (180)
Q Consensus 42 p~avsv~~G~~~~LAYs~~~~---~~l~pR~F~~~DDIfClF~G~LeNL~~L~qQYGL---sK~aNEv~lVIEAYRTLRD 115 (180)
|++..+...+...|..+.-.. +.-.+-.+..-+++..+|-|.|.|-..|++++.. -++.++.-+++++|+.-
T Consensus 32 pD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~~-- 109 (192)
T d1ct9a2 32 PDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEK-- 109 (192)
T ss_dssp BTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHH--
T ss_pred CCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhhc--
Confidence 677777776666666653211 1111112234467889999999999999999854 34567888888888753
Q ss_pred cCCCCcccccccccCceEEEEEec
Q 030267 116 RAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 116 RgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
| ...++.|+|.|||++++.
T Consensus 110 -g----~~~~~~l~G~fa~~i~d~ 128 (192)
T d1ct9a2 110 -G----PEFLDDLQGMFAFALYDS 128 (192)
T ss_dssp -T----TTTGGGCCEEEEEEEEET
T ss_pred -c----hhhhhhhhhheEEEEEec
Confidence 3 347899999999999987
No 3
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}
Probab=93.37 E-value=0.043 Score=43.08 Aligned_cols=62 Identities=16% Similarity=-0.027 Sum_probs=50.7
Q ss_pred ccccceeEeecccccChHHHHHhh---CC-cccccceeehHHHHHHhHhcCCCCcccccccccCceEEEEEec
Q 030267 71 AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 139 (180)
Q Consensus 71 ~~~DDIfClF~G~LeNL~~L~qQY---GL-sK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~~~~~ 139 (180)
+-.+..-.+|-|.|=|-..||++. |. .++.++.=+++++|+..- .+.++.|+|-|||.+++-
T Consensus 45 ~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~~G-------~~~l~~l~G~Faf~i~~~ 110 (204)
T d1q15a2 45 CEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG-------ANALALAEGDFCFFIDEP 110 (204)
T ss_dssp EECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC-------GGGGGGCCSSEEEEEECT
T ss_pred ccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHHHH-------HHHHHhhCCceEEEEecC
Confidence 345777889999999999999964 43 467788888999999865 468999999999987664
No 4
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.56 E-value=0.14 Score=39.00 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=50.6
Q ss_pred cccceeEeecccccChHHHHHhhC---C-cccccceeehHHHHHHhHhcCCCCcc---cccccccCceEEEEEecc
Q 030267 72 VKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPN---HVVGHLSGTNLVRFLFIG 140 (180)
Q Consensus 72 ~~DDIfClF~G~LeNL~~L~qQYG---L-sK~aNEv~lVIEAYRTLRDRgPYPAd---QVVkdL~G~Faf~~~~~g 140 (180)
..+++..++-|.|.|-..|++.+- - -++.++.-++.+.|..+.+.+.-+-+ ++++.++|.|+|++++..
T Consensus 89 ~~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~~a~~i~~~~ 164 (238)
T d1xffa_ 89 VSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSR 164 (238)
T ss_dssp EETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETT
T ss_pred cCCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccCchhhhhhhcc
Confidence 347889999999999999998763 2 13455555666777666655554432 578999999999998863
No 5
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=91.03 E-value=0.022 Score=43.33 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=44.0
Q ss_pred cceeEeecccccChHHHHHhhC---C-cccccceeehHHHHHHhHhcCCCCc----ccccccccCceEEEEEecch
Q 030267 74 DEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPP----NHVVGHLSGTNLVRFLFIGE 141 (180)
Q Consensus 74 DDIfClF~G~LeNL~~L~qQYG---L-sK~aNEv~lVIEAYRTLRDRgPYPA----dQVVkdL~G~Faf~~~~~g~ 141 (180)
.++..+|-|.|.|-..||+.+- - ..+.++.-++...|+.. +..-. .+++++|+|.|+|++++-++
T Consensus 95 ~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~---~~~~~~~ai~~~~~~l~G~~a~~i~~~~~ 167 (234)
T d1gph12 95 GSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRS---GHFTLKDQIKNSLSMLKGAYAFLIMTETE 167 (234)
T ss_dssp CCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTC---CCSSHHHHHHHHHTTCCEEEEEEEECSSC
T ss_pred ceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHH---hhhhHHHHHHHHHHhcCCceEEEEeecCc
Confidence 5799999999999999988863 2 23444444444444332 11111 25889999999999987655
No 6
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=70.23 E-value=4.9 Score=30.49 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred ceeEeecccccChHHHHHhh----C--C-cccccceeehHHHHHHhHhcCCCC---c-------ccccccccCceEEEEE
Q 030267 75 EIFCLFEGALDNLGSLRQQY----G--L-AKSANEVILVIEAYKALRDRAPYP---P-------NHVVGHLSGTNLVRFL 137 (180)
Q Consensus 75 DIfClF~G~LeNL~~L~qQY----G--L-sK~aNEv~lVIEAYRTLRDRgPYP---A-------dQVVkdL~G~Faf~~~ 137 (180)
++...+-|.|+|--.|++++ | + +.+-+|++ .+.+....|+.... . ..+++.++|+|++++.
T Consensus 95 ~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi--~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~l~Gs~~~~~~ 172 (249)
T d1ecfa2 95 GITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEIL--LNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAM 172 (249)
T ss_dssp CEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHH--HHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred cEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHH--HHHHHHHHhccccccchhhhHHHHHHHHHHhcCCCceEEEE
Confidence 58889999999999886653 2 2 34455554 44554445554432 2 2367889999999887
Q ss_pred ecc
Q 030267 138 FIG 140 (180)
Q Consensus 138 ~~g 140 (180)
..+
T Consensus 173 ~~~ 175 (249)
T d1ecfa2 173 IIG 175 (249)
T ss_dssp ETT
T ss_pred ecC
Confidence 664
No 7
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=61.26 E-value=2.4 Score=27.39 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred cccChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030267 83 ALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 83 ~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
.|.....|.++||.|+++ |-|||+.|.+.|
T Consensus 26 ~LPs~~eLa~~~~vSr~t-----vr~Al~~L~~~G 55 (74)
T d1hw1a1 26 ILPAERELSELIGVTRTT-----LREVLQRLARDG 55 (74)
T ss_dssp BCCCHHHHHHHHTCCHHH-----HHHHHHHHHHTT
T ss_pred CCccHHHHHHHHCCCHHH-----HHHHHHHHHHCC
Confidence 355677899999999976 899999999877
No 8
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=58.24 E-value=2.2 Score=28.86 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=32.4
Q ss_pred ccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEE
Q 030267 84 LDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVR 135 (180)
Q Consensus 84 LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~ 135 (180)
|-+...|.++||.|++| |-+||+.|.+.| +|.--.|+=+||
T Consensus 33 LPs~r~La~~~~vSr~t-----vr~Al~~L~~~G------li~~~~g~G~~V 73 (100)
T d1v4ra1 33 LPSVADIRAQFGVAAKT-----VSRALAVLKSEG------LVSSRGALGTVV 73 (100)
T ss_dssp CCCHHHHHHHSSSCTTH-----HHHHTTTTTTSS------CCEEETTTEEES
T ss_pred CccHHHHHHHHCCCHHH-----HHHHHHHHHHCC------cEEEecCCEEEE
Confidence 56788999999999987 889999999877 555555654444
No 9
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=51.23 E-value=4.5 Score=25.79 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=31.1
Q ss_pred cccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCCcccccccccCceEEE
Q 030267 83 ALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVR 135 (180)
Q Consensus 83 ~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYPAdQVVkdL~G~Faf~ 135 (180)
.|-+...|.++||.|+++ |-|||+.|.+.| +|.--.|+=+||
T Consensus 21 ~LPse~~La~~~~vSr~t-----vr~Al~~L~~~G------li~~~~g~G~~V 62 (78)
T d3bwga1 21 KLPVLETLMAQFEVSKST-----ITKSLELLEQKG------AIFQVRGSGIFV 62 (78)
T ss_dssp BCCCHHHHHHHTTCCHHH-----HHHHHHHHHHTT------SEEEETTTEEEE
T ss_pred CCcCHHHHHHHHCCCHHH-----HHHHHHHHHHCC------cEEEEcCcEEEE
Confidence 345778899999999976 889999999876 444445544443
No 10
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=49.83 E-value=1.9 Score=28.67 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=33.2
Q ss_pred eecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCC
Q 030267 79 LFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118 (180)
Q Consensus 79 lF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgP 118 (180)
++.+..+.|-.++++.||+=+..|.-.+.+.|+.+. |.|
T Consensus 11 i~~~~~~~L~~~n~~~gLaL~~~e~~~i~~~f~~~~-R~P 49 (68)
T d1t3ta1 11 LLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLG-RNP 49 (68)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-SCC
T ss_pred CccCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CCC
Confidence 456677889999999999999999999999998864 444
No 11
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=46.54 E-value=4.7 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.3
Q ss_pred ChHHHHHhhCCcccccceeehHHHHHHhHhcC
Q 030267 86 NLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117 (180)
Q Consensus 86 NL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRg 117 (180)
....|.++||.|+++ |-|||+.|.+.|
T Consensus 27 ~~~~La~~~~vSr~t-----vr~Al~~L~~~G 53 (69)
T d2hs5a1 27 SEPDICAALDVSRNT-----VREAFQILIEDR 53 (69)
T ss_dssp CHHHHHHHHTCCHHH-----HHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHH-----HHHHHHHHHHCC
Confidence 367899999999876 889999999876
No 12
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=44.57 E-value=4.8 Score=26.58 Aligned_cols=27 Identities=4% Similarity=-0.016 Sum_probs=16.5
Q ss_pred HHHhhCCcccccce--eehHHHHHHhHhc
Q 030267 90 LRQQYGLAKSANEV--ILVIEAYKALRDR 116 (180)
Q Consensus 90 L~qQYGLsK~aNEv--~lVIEAYRTLRDR 116 (180)
|.++|+--|+.+|. .-|-|||++|+|.
T Consensus 37 l~~~~HPDk~g~~e~~~~in~Ay~~L~d~ 65 (79)
T d1fafa_ 37 QSLLLHPDKGGSHALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCHHHHHHHHHHHHHHCCH
Confidence 33445555554443 3477899999873
No 13
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=42.90 E-value=5.8 Score=25.10 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=9.5
Q ss_pred ehHHHHHHhHh
Q 030267 105 LVIEAYKALRD 115 (180)
Q Consensus 105 lVIEAYRTLRD 115 (180)
.|.|||.+|+|
T Consensus 53 ~i~~Ay~vL~d 63 (76)
T d1fpoa1 53 TINQAWQTLRH 63 (76)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhCC
Confidence 67899999987
No 14
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]}
Probab=36.72 E-value=2.9 Score=33.62 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=29.5
Q ss_pred cccceeehHHHHHHhHhc-----CCCCccccc-ccccCceEEEE
Q 030267 99 SANEVILVIEAYKALRDR-----APYPPNHVV-GHLSGTNLVRF 136 (180)
Q Consensus 99 ~aNEv~lVIEAYRTLRDR-----gPYPAdQVV-kdL~G~Faf~~ 136 (180)
+.-|.-+++-|.+.||+. ||||||-+- +.-.|+|--++
T Consensus 219 G~EE~~ii~Pai~~~~~~gi~v~GP~paDt~F~~~~~~~~D~vv 262 (329)
T d1ptma_ 219 GTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVL 262 (329)
T ss_dssp CSHHHHTHHHHHHHHHHTTCEEEEEECHHHHSSHHHHTTCSEEE
T ss_pred hhhhhHHHHHHHHHHHhcCcccCCCCCcchhhhhhhcCCccEEE
Confidence 456888999999999998 899999964 44556775544
No 15
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=35.01 E-value=7.6 Score=26.32 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=16.0
Q ss_pred eeEeecccccChHHHHHhhCCc
Q 030267 76 IFCLFEGALDNLGSLRQQYGLA 97 (180)
Q Consensus 76 IfClF~G~LeNL~~L~qQYGLs 97 (180)
|+=-|.|. |...|.++||||
T Consensus 60 I~~ef~G~--n~~eLA~kY~lS 79 (94)
T d1rr7a_ 60 IWNDFNGR--NVSELTTRYGVT 79 (94)
T ss_dssp HHHHCCSS--CHHHHHHHHTCC
T ss_pred HHHHhCCC--CHHHHHHHHCCC
Confidence 33445676 999999999998
No 16
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=27.69 E-value=5.3 Score=24.63 Aligned_cols=32 Identities=41% Similarity=0.593 Sum_probs=23.1
Q ss_pred eecccccChHHHHHhhCCcccccceeehHHHHH
Q 030267 79 LFEGALDNLGSLRQQYGLAKSANEVILVIEAYK 111 (180)
Q Consensus 79 lF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYR 111 (180)
+-+-.++||-.|.+.-|+||++-=+ +-.|-|+
T Consensus 9 lse~~~~~lek~a~e~g~sksa~~~-~ale~y~ 40 (43)
T d2cpga_ 9 LSESVLENLEKMAREMGLSKSAMIS-VALENYK 40 (43)
T ss_dssp EEHHHHHHHHHHHHHHTCCHHHHHH-HHHHHHH
T ss_pred ecHHHHHHHHHHHHHcCccHHHHHH-HHHHhhc
Confidence 3455689999999999999987322 2346564
No 17
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=26.97 E-value=14 Score=25.45 Aligned_cols=39 Identities=18% Similarity=0.460 Sum_probs=26.4
Q ss_pred cccccceeEeecccccChHHHHHhhCCcccccceeehHHHHHHhHhcCCCC
Q 030267 70 FAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120 (180)
Q Consensus 70 F~~~DDIfClF~G~LeNL~~L~qQYGLsK~aNEv~lVIEAYRTLRDRgPYP 120 (180)
|+-.++...+|.|.|+.- -|+.. ++|||++.|+++.++|
T Consensus 27 ~~l~~~~~il~~Grl~~~---------~Kg~~---~li~a~~~l~~~~~~~ 65 (196)
T d2bfwa1 27 FGMDEGVTFMFIGRFDRG---------QKGVD---VLLKAIEILSSKKEFQ 65 (196)
T ss_dssp TTCCSCEEEEEESCBCSS---------SSCHH---HHHHHHHHHTTSGGGG
T ss_pred hCCCCCCEEEEEcCCCcc---------ccCHH---HHHHHHHhhhcccCCC
Confidence 445578888888876310 03333 4799999998888776
No 18
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=23.54 E-value=16 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHhhCCcccccc------eeehHHHHHHhHh
Q 030267 90 LRQQYGLAKSANE------VILVIEAYKALRD 115 (180)
Q Consensus 90 L~qQYGLsK~aNE------v~lVIEAYRTLRD 115 (180)
|.++|+--|..++ -..|-|||.+|.|
T Consensus 27 l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d 58 (75)
T d1xbla_ 27 LAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58 (75)
T ss_dssp HHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhccCCChHHHHHHHHHHHHHHhcCC
Confidence 4556666554332 2457899999876
No 19
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=22.36 E-value=16 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=12.9
Q ss_pred cChHHHHHhhCCccc
Q 030267 85 DNLGSLRQQYGLAKS 99 (180)
Q Consensus 85 eNL~~L~qQYGLsK~ 99 (180)
.|...|+++|||.|.
T Consensus 17 ~N~~~L~~~F~lp~~ 31 (46)
T d1e0ea_ 17 SNVKELSHKFGIPNL 31 (46)
T ss_dssp CCHHHHHHHTCCCHH
T ss_pred cCHHHHHHHcCCCHH
Confidence 488999999999864
No 20
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.30 E-value=16 Score=22.40 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=12.8
Q ss_pred cChHHHHHhhCCccc
Q 030267 85 DNLGSLRQQYGLAKS 99 (180)
Q Consensus 85 eNL~~L~qQYGLsK~ 99 (180)
.|...|+++|||++.
T Consensus 17 ~n~~~L~~~F~ip~~ 31 (46)
T d1k6ya1 17 SNWRAMASDFNLPPV 31 (46)
T ss_dssp CCHHHHHHHHTCCHH
T ss_pred cCHHHHHHHcCCCHH
Confidence 488899999999864
No 21
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.35 E-value=9.5 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=32.8
Q ss_pred ccc--cccccccceeEeecccccChHHHHHhhCC-cccccceeehHHHHHHhHhcCCCC
Q 030267 65 LRQ--RSFAVKDEIFCLFEGALDNLGSLRQQYGL-AKSANEVILVIEAYKALRDRAPYP 120 (180)
Q Consensus 65 l~p--R~F~~~DDIfClF~G~LeNL~~L~qQYGL-sK~aNEv~lVIEAYRTLRDRgPYP 120 (180)
-|| |.++. -++-...-|.|+|...|++.+-. +.+-.|.+ .-+.=..|+++.|.+
T Consensus 90 ~hPf~~~~~~-~~~~f~HNG~i~n~~~l~~~~~~~g~tDse~~-~~~i~~~l~~~~~~~ 146 (253)
T d1te5a_ 90 THPFIRELGG-RYWTFAHNGQLADFQPKPGFYRPVGETDSEAA-FCDLLNRVRRAFPEP 146 (253)
T ss_dssp CSCEEEEETT-EEEEEEEESCBSSCCCCCCSSCCSSCCHHHHH-HHHHHHHHHHHCSSC
T ss_pred CCceEEEcCC-CCEEEEEeeeEechhhhhhhhcccCCCccchh-HHHHHHHHHhccccC
Confidence 356 44443 34666899999999998877654 23334443 344445566666554
Done!