BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030269
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B8HUU1|NDHN_CYAP4 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1
Length = 158
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 46/147 (31%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
+++ D+EK A+ IY P EGG+EGRY RLR GY L +SA GLGD + LT+V+ V P
Sbjct: 9 QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68
Query: 132 V----------------------------------------------LSKSELQFLALLP 145
LS+ EL +L++LP
Sbjct: 69 PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128
Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
PKV+++ E G R+F W+PLKE+A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMA 155
>sp|B7JYJ3|NDHN_CYAP8 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain
PCC 8801) GN=ndhN PE=3 SV=1
Length = 158
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 46/145 (31%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ +EK ++A+Y P EGG+EGRY RLR GY+ L+ARGLGD L V+ V P
Sbjct: 10 FIRALEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPP 69
Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
+LS++EL++LA LPT
Sbjct: 70 HLGKKNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPT 129
Query: 147 LRPKVRVIAECGNWRKFMWKPLKEI 171
L P+++V+ E G R F WKPL E+
Sbjct: 130 LEPRLKVVIELGGERYFSWKPLPEV 154
>sp|Q5N0W6|NDHN_SYNP6 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN
PE=3 SV=1
Length = 158
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 46/147 (31%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++L +E+ A+A+Y P EGGYEGRYL RLR GY L SARGLGDP L ++ V P
Sbjct: 9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68
Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
VLS EL + LP
Sbjct: 69 PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128
Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
P+++V+ E G R F W+PL +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155
>sp|Q31L05|NDHN_SYNE7 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus
(strain PCC 7942) GN=ndhN PE=3 SV=1
Length = 158
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 46/147 (31%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++L +E+ A+A+Y P EGGYEGRYL RLR GY L SARGLGDP L ++ V P
Sbjct: 9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68
Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
VLS EL + LP
Sbjct: 69 PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128
Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEIA 172
P+++V+ E G R F W+PL +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155
>sp|Q8YPH8|NDHN_NOSS1 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ndhN PE=3 SV=1
Length = 162
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 64/143 (44%), Gaps = 46/143 (32%)
Query: 74 LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
+ D+EK ++ +Y P EGG+EGRY RLR GY L +ARGLGD LT V+ V P
Sbjct: 11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70
Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
+LS E++FL LP+L
Sbjct: 71 LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTSLPSL 130
Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
P+V+V+ E G R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153
>sp|Q3MFC2|NDHN_ANAVT NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1
Length = 162
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 46/143 (32%)
Query: 74 LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
+ D+EK ++ +Y P EGG+EGRY RLR GY L +ARGLGD LT V+ V P
Sbjct: 11 IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70
Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
+LS E++FL LP L
Sbjct: 71 LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTDLPKL 130
Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
P+V+V+ E G R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153
>sp|B2ITQ6|NDHN_NOSP7 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1
Length = 158
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 46/143 (32%)
Query: 74 LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
+ D+EK A+ +Y P EGGYEGRY RLR GY L ++A+GLGD LT+++ V P
Sbjct: 11 IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRPPH 70
Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
+LS EL++L LP L
Sbjct: 71 LGKKSTGSGAAVGQVYYLPPILDSHLEQLPPKSKGLVLWIIEGHILSNEELEYLTNLPQL 130
Query: 148 RPKVRVIAECGNWRKFMWKPLKE 170
P+V+V+ E G R F W L++
Sbjct: 131 EPRVKVVIERGGDRAFRWTSLEK 153
>sp|B1WYX9|NDHN_CYAA5 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain
ATCC 51142) GN=ndhN PE=3 SV=1
Length = 158
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 46/145 (31%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ +EK A+ +Y P EGG+EGRY RLR GY L L+ARGLGD L V+ V P
Sbjct: 10 FVRALEKSGALGVYAPLEGGFEGRYQRRLRTNGYDSLSLTARGLGDVSAYLMGVHGVRPP 69
Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
+LSK+EL++L LP
Sbjct: 70 HLGKKNIGQGAAVGPIYFVPPIAAYQLESLSPQSKGLVLWILEGYILSKAELEYLVSLPQ 129
Query: 147 LRPKVRVIAECGNWRKFMWKPLKEI 171
P+++V+ E G R F W+PL+ +
Sbjct: 130 QEPRIKVVVELGGERYFRWEPLENL 154
>sp|B1XK97|NDHN_SYNP2 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhN PE=3 SV=1
Length = 157
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 47/146 (32%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ VEK A+A+Y P EGG+EGRY+ RLR GY ++L+ARGLGD LT+ + + P
Sbjct: 10 FIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPP 69
Query: 132 ----------------------------------------------VLSKSELQFLALLP 145
VLS+ E ++L L
Sbjct: 70 HLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLT 129
Query: 146 TLRPKVRVIAECGNWRKFMWKPLKEI 171
P+++V+ E G R+F +KPL ++
Sbjct: 130 QDNPQIKVVVEMGGDRQFSFKPLADL 155
>sp|Q110A6|NDHN_TRIEI NAD(P)H-quinone oxidoreductase subunit N OS=Trichodesmium
erythraeum (strain IMS101) GN=ndhN PE=3 SV=1
Length = 158
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 46/142 (32%)
Query: 74 LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-- 131
+ D+EK ++A+Y P EGG+EGRY RLR GY ++ARGLGD LT V+ V P
Sbjct: 11 IRDLEKSGSLAVYPPLEGGFEGRYQRRLRASGYVSESITARGLGDLAMYLTGVHGVRPPH 70
Query: 132 --------------------------------------------VLSKSELQFLALLPTL 147
+LS E+++L +LP
Sbjct: 71 LGKKTVGNGPAVGYVYYVPPIVNYKLEHLPPKAKGLVLWIMEGQILSSQEIEYLTVLPKS 130
Query: 148 RPKVRVIAECGNWRKFMWKPLK 169
P+V+VI E G R F W PL+
Sbjct: 131 EPRVKVIVEMGGDRFFRWTPLQ 152
>sp|B7KEE5|NDHN_CYAP7 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain
PCC 7424) GN=ndhN PE=3 SV=1
Length = 158
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 46/144 (31%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ +EK A+ +Y P EGG+EGRY RLR GY +L+ARGLGD + LT ++ V P
Sbjct: 10 FIRALEKSGALGVYVPLEGGFEGRYQRRLRANGYTPYNLTARGLGDLSSYLTGIHGVRPP 69
Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
+LS++E+++L LP
Sbjct: 70 HLGKKNIGQDAAVGPVYFVPPIATYQLETLPPKSKGLVLWIIEGMILSRAEIEYLTYLPQ 129
Query: 147 LRPKVRVIAECGNWRKFMWKPLKE 170
P+++++ E G R F W+PL++
Sbjct: 130 QEPRLKIVVEMGGERYFRWQPLEQ 153
>sp|B0CA85|NDHN_ACAM1 NAD(P)H-quinone oxidoreductase subunit N OS=Acaryochloris marina
(strain MBIC 11017) GN=ndhN PE=3 SV=1
Length = 151
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 39/141 (27%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
+++ +E+ A+ IY P EGG+EGRY RLR GY L +SA G+GD + T V+ V P
Sbjct: 9 KFIRTIEQSGAVGIYVPSEGGFEGRYKRRLRATGYLTLFVSAPGMGDLASYFTDVHGVRP 68
Query: 132 V---------------------------------------LSKSELQFLALLPTLRPKVR 152
L+K EL +L+ + P+++
Sbjct: 69 PHLGKNQIRTYFLPPFVTYQLENLPPQAKGLALWLYDGKRLAKQELAYLSAITASEPRLK 128
Query: 153 VIAECGNWRKFMWKPLKEIAG 173
V+ E G R F W+PL +I
Sbjct: 129 VVVELGGARSFEWQPLSDIVA 149
>sp|P74069|NDHN_SYNY3 NAD(P)H-quinone oxidoreductase subunit N OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ndhN PE=1 SV=1
Length = 161
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 63/142 (44%), Gaps = 46/142 (32%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ +E A+A+Y P EGGYEGRY RLR GY + LSARGLGD E L +V+ V P
Sbjct: 13 FIRALENDGALAVYAPLEGGYEGRYQRRLRANGYASISLSARGLGDVEAYLMQVHGVRPA 72
Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
+LS++E+Q L L
Sbjct: 73 HLGKKNIAQEGAVGPIYFAQPIAGYQLENLPAQSKGLVLWILEGYILSQTEIQDLISLTK 132
Query: 147 LRPKVRVIAECGNWRKFMWKPL 168
PK++V+ E G R F W+PL
Sbjct: 133 RVPKLKVVLEMGGDRVFRWQPL 154
>sp|A2BYT7|NDHN_PROM5 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9515) GN=ndhN PE=3 SV=1
Length = 156
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 43/142 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D++K+K +A++ P EGGYE R L R+R G+ SARGLGDPE L ++ + P
Sbjct: 9 KFHNDLKKNKCLAMFAPLEGGYETRLLRRMRAKGFKTYITSARGLGDPEVFLLNLHGIRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L LPT
Sbjct: 69 PHLGHQSIGRNGALGEVQQVIPQASELFNENDKDKLLWLLEGQVLSQSELENLIKLPTAD 128
Query: 149 PKVRVIAECGNWRKFMWKPLKE 170
K++++ E G RK WK L +
Sbjct: 129 NKLKIVVEMGGSRKLEWKSLND 150
>sp|Q7NEV8|NDHN_GLOVI NAD(P)H-quinone oxidoreductase subunit N OS=Gloeobacter violaceus
(strain PCC 7421) GN=ndhN PE=3 SV=1
Length = 159
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
R+++DVEKH +IA++ P EGG EG Y RLR +GY ++A+GLGD L + + V P
Sbjct: 13 RFVADVEKHSSIALWAPPEGGIEGNYQRRLRGIGYRTQIITAKGLGDISRFLLESHGVRP 72
Query: 132 ---------------------------------------VLSKSELQFLALLPTLRPKVR 152
VLS EL+ L LP PK++
Sbjct: 73 AHLGKKDKRVFTLPPELAIYMDTLPASAKGFVLWIIEGKVLSLFELESLVGLPAAVPKLK 132
Query: 153 VIAECGNWRKFMWKPLKEIAGLTQEG 178
VI E G+ W PL++ EG
Sbjct: 133 VIVEVGSDYNIRWMPLEQAVSKMAEG 158
>sp|B0JY52|NDHN_MICAN NAD(P)H-quinone oxidoreductase subunit N OS=Microcystis aeruginosa
(strain NIES-843) GN=ndhN PE=3 SV=1
Length = 158
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 46/144 (31%)
Query: 73 WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP- 131
++ D+E++ A+ +Y P EGGYEGRY RLR GY L ++ARGLGD LT ++ V P
Sbjct: 10 FIRDLEQYGALGVYAPLEGGYEGRYQRRLRATGYNVLHITARGLGDLSAYLTGIHGVRPP 69
Query: 132 ---------------------------------------------VLSKSELQFLALLPT 146
VLS E Q+L L
Sbjct: 70 HLGKKNIGREAAVGPVYFIPPIATYQLENLPPKSKGLVIWIIESFVLSSEEKQYLINLSQ 129
Query: 147 LRPKVRVIAECGNWRKFMWKPLKE 170
P+++ + E G R F W+PL +
Sbjct: 130 QEPRLKFVLELGGERYFRWQPLSK 153
>sp|A2BTD8|NDHN_PROMS NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain AS9601) GN=ndhN PE=3 SV=1
Length = 158
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 43/140 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D++ +K +AI+ P EGGYE R L R+R G+ SARGLGDPE L K++ V P
Sbjct: 9 KFHNDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L + T
Sbjct: 69 PHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTND 128
Query: 149 PKVRVIAECGNWRKFMWKPL 168
K+ ++ E G RK WKPL
Sbjct: 129 NKLTIVVEMGGSRKLEWKPL 148
>sp|A8G763|NDHN_PROM2 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9215) GN=ndhN PE=3 SV=1
Length = 158
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 43/140 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D++ +K +AI+ P EGGYE R L R+R G+ SARGLGDPE L K++ V P
Sbjct: 9 KFHNDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L + T
Sbjct: 69 PHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTND 128
Query: 149 PKVRVIAECGNWRKFMWKPL 168
K+ ++ E G RK WKPL
Sbjct: 129 NKLTIVVEMGGSRKLEWKPL 148
>sp|Q318I3|NDHN_PROM9 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9312) GN=ndhN PE=3 SV=1
Length = 158
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 43/140 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D++ +K +AI+ P EGGYE R L R+R G+ SARGLGDPE L K++ V P
Sbjct: 9 QFHNDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L + T
Sbjct: 69 PHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTND 128
Query: 149 PKVRVIAECGNWRKFMWKPL 168
K+ ++ E G RK WKPL
Sbjct: 129 NKLSIVVEMGGSRKLEWKPL 148
>sp|Q7U4K1|NDHN_SYNPX NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain WH8102) GN=ndhN PE=3 SV=1
Length = 153
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 42/136 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D+E H +A++ P EGG E R L RLR GY SARGLGDPE LT+ + + P
Sbjct: 13 DLEAHGCLAVHAPLEGGAETRLLRRLRGAGYRTRLWSARGLGDPEVFLTQKHGIRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL+ L L + P++R+
Sbjct: 73 HQSVGRGAAVGEVQEVVPQLGDLLDGDAQVALWLLEGQVLSQSELRSLCDLCSREPRLRI 132
Query: 154 IAECGNWRKFMWKPLK 169
I E G R W+P+
Sbjct: 133 IVEMGGARSLRWQPMS 148
>sp|Q3AUW5|NDHN_SYNS9 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain CC9902) GN=ndhN PE=3 SV=1
Length = 157
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 60/140 (42%), Gaps = 42/140 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D+E + +A++ P EGG E R L RLR GY SARGLGDPE LT+ + + P
Sbjct: 17 DLEANGCLAVHAPLEGGAETRLLRRLRGAGYRTRMTSARGLGDPEVFLTQKHGIRPPHLG 76
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L P++R+
Sbjct: 77 HNCVGRGAAVGEVQQVVPLIGDLLDGDDSVALWILEGQVLSRSELLSLCDLCKREPRLRI 136
Query: 154 IAECGNWRKFMWKPLKEIAG 173
I E G R W+P+K + G
Sbjct: 137 IVEMGGARSLRWQPMKALLG 156
>sp|Q7UZU6|NDHN_PROMP NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=ndhN PE=3
SV=1
Length = 156
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 43/142 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D+ K+K +A++ P EGGYE R L R+R G+ SARGLGDPE L K++ + P
Sbjct: 9 KFHNDLNKNKCLAMFAPLEGGYETRLLRRMRAKGFKTYITSARGLGDPEVFLLKLHGIRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L + T
Sbjct: 69 PHLGHQSIGRNGALGEVQQVIPQASELFNENDKDKLLWLLEGQVLSQSELESLIKICTSD 128
Query: 149 PKVRVIAECGNWRKFMWKPLKE 170
K++++ E G RK WK L +
Sbjct: 129 NKLKIVVEMGGSRKLEWKSLND 150
>sp|A3PF48|NDHN_PROM0 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9301) GN=ndhN PE=3 SV=1
Length = 158
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 43/140 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D++ +K +AI+ P EGGYE R L R+R G+ SARGLGDPE L K++ V P
Sbjct: 9 KFHNDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRP 68
Query: 132 -------------------------------------------VLSKSELQFLALLPTLR 148
VLS+SEL+ L + T
Sbjct: 69 PHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTKD 128
Query: 149 PKVRVIAECGNWRKFMWKPL 168
K+ ++ E G RK WK L
Sbjct: 129 NKLTIVVEMGGSRKLEWKSL 148
>sp|Q8DJU2|NDHN_THEEB NAD(P)H-quinone oxidoreductase subunit N OS=Thermosynechococcus
elongatus (strain BP-1) GN=ndhN PE=1 SV=1
Length = 150
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 39/138 (28%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
+++ D+E A+A++ P EGG+EGRY RLR GY L +SA GLGD LT+ + + P
Sbjct: 8 QFVKDLESAGALALFVPPEGGFEGRYQRRLRSKGYTTLPMSAPGLGDLAAYLTQEHGIRP 67
Query: 132 V---------------------------------------LSKSELQFLALLPTLRPKVR 152
LSK E +LA L PK +
Sbjct: 68 AHTGKEDIRVYFQPPLVTYHLENLPPNAKGLVLWLIDGKRLSKQEFAYLAQLTQTLPKFK 127
Query: 153 VIAECGNWRKFMWKPLKE 170
V+ E G R W+PL +
Sbjct: 128 VVVEVGGDRVVRWEPLAD 145
>sp|A2C500|NDHN_PROM1 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain NATL1A) GN=ndhN PE=3 SV=1
Length = 154
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 42/141 (29%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D+E +AI +P EGG E R L RLR GY SARGLGDP LT+++ + P
Sbjct: 9 KFRTDLESFGCLAILSPLEGGAETRLLRRLRASGYQTQITSARGLGDPVVFLTQLHGIRP 68
Query: 132 ------------------------------------------VLSKSELQFLALLPTLRP 149
VLSKSEL ++ L P
Sbjct: 69 PHLGHQNVGRNGALGEVQQVIPQLNELLVEDKPLVLWLLEGQVLSKSELLAISNLCQKEP 128
Query: 150 KVRVIAECGNWRKFMWKPLKE 170
+++++ E G R W+PL E
Sbjct: 129 RIKIVIEMGGARSIKWQPLNE 149
>sp|Q46IQ8|NDHN_PROMT NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain NATL2A) GN=ndhN PE=3 SV=1
Length = 154
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 42/141 (29%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ +D+E +AI +P EGG E R L RLR GY SARGLGDP LT+++ + P
Sbjct: 9 KFRTDLESFGCLAILSPLEGGAETRLLRRLRASGYQTQVTSARGLGDPVVFLTQLHGIRP 68
Query: 132 ------------------------------------------VLSKSELQFLALLPTLRP 149
VLSKSEL + L P
Sbjct: 69 PHLGHQNVGRNGALGEVQQVIPQLNELLVEDKPLVLWLLEGQVLSKSELLAINNLCQKEP 128
Query: 150 KVRVIAECGNWRKFMWKPLKE 170
+++++ E G R W+PL E
Sbjct: 129 RIKIVIEMGGARSIKWQPLNE 149
>sp|Q0ID04|NDHN_SYNS3 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain CC9311) GN=ndhN PE=3 SV=1
Length = 153
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 42/138 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
++E +A++ P EGG E R L RLR GY SARGLGDPE L + + + P
Sbjct: 13 ELESAGCMAVFAPLEGGAETRLLRRLRGAGYRTQLSSARGLGDPEVFLFQKHGIRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L P+++V
Sbjct: 73 HQSVGRGAAVGEVQEVMPLLGESMLGTKPVVLWLLEGQVLSRSELSALCDLCRREPRLKV 132
Query: 154 IAECGNWRKFMWKPLKEI 171
+ E G R W+PLKE+
Sbjct: 133 VVEMGGARSLRWQPLKEL 150
>sp|A5GVV9|NDHN_SYNR3 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain RCC307) GN=ndhN PE=3 SV=1
Length = 153
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 42/136 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D+E+ +A+A+Y P EGG E R L RLR GY SARGLGDPE L ++ V P
Sbjct: 13 DLERERALAVYAPLEGGAETRLLRRLRAAGYRTELTSARGLGDPEAFLLGLHGVRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS +E L L P++ +
Sbjct: 73 HHCVGRDAAVGEVQLVMPQLGPALASGAPVVLWMLEGQVLSSAEQASLLALCEREPRLHM 132
Query: 154 IAECGNWRKFMWKPLK 169
+ E G R WKPL+
Sbjct: 133 VLELGGSRSLRWKPLR 148
>sp|Q3AMM9|NDHN_SYNSC NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain CC9605) GN=ndhN PE=3 SV=1
Length = 153
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 42/135 (31%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D+E + +A+ P EGG E R L RLR GY SARGLGDPE LT+ + + P
Sbjct: 13 DLEANGCLAVQAPLEGGAETRLLRRLRGAGYSTRMTSARGLGDPEVFLTQKHGIRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L P++R+
Sbjct: 73 HQSVGRGAAVGEVQEVAPQLGDLFESDAPVALWLLEGQVLSRSELLSLCDLCKREPRLRI 132
Query: 154 IAECGNWRKFMWKPL 168
I E G R W+P+
Sbjct: 133 IVEMGGARSLKWEPM 147
>sp|Q2JIJ7|NDHN_SYNJB NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=ndhN PE=3 SV=1
Length = 147
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 39/137 (28%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
+++ +E+ A+AIY EGG EG YL RLR GY + LS++G+GD + LT+++ V P
Sbjct: 9 KFVQQLEQAGALAIYVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLTRIHGVRP 68
Query: 132 ---------------------------------------VLSKSELQFLALLPTLRPKVR 152
V S+ EL +L L V+
Sbjct: 69 ATLGKSERRTYFFPALIEQYRATLPPKAKGLVFWFYEGHVFSQQELSYLVKLSREDKGVK 128
Query: 153 VIAECGNWRKFMWKPLK 169
+ E G R W+PL+
Sbjct: 129 FVVELGRERSIRWQPLQ 145
>sp|B1X509|NDHN_PAUCH NAD(P)H-quinone oxidoreductase subunit N, organellar chromatophore
OS=Paulinella chromatophora GN=ndhN PE=3 SV=1
Length = 158
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 46/143 (32%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYP------- 128
D+E+ A+A++ P EGG E R + RLR +GY SA+GLGDPE L K++
Sbjct: 13 DLERDGALALFVPLEGGAETRLMRRLRAVGYKAYLTSAKGLGDPEAYLLKLHEQHVPHLG 72
Query: 129 -------------------VCP--------------------VLSKSELQFLALLPTLRP 149
V P VLS SEL ++ LP P
Sbjct: 73 RRMSTEGKPEGKSVGHVPKVMPMLGPLLEGKSPILLWLLEGQVLSSSELSAISNLPKREP 132
Query: 150 KVRVIAECGNWRKFMWKPLKEIA 172
+++++ E G R W+ L ++
Sbjct: 133 RLKIVVEMGGARALRWESLGKLV 155
>sp|A2CC26|NDHN_PROM3 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9303) GN=ndhN PE=3 SV=1
Length = 153
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 42/141 (29%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D++ +A++ P EGG E R L RLR GY SARGLGDPE L +++ + P
Sbjct: 13 DLDACGCLAMHVPLEGGSETRLLRRLRAAGYRTQLSSARGLGDPEVFLFQLHGIRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L ++RV
Sbjct: 73 HQSVGRNGAVGEVQQVMPQLAELFVDNVPVVLWLLEGQVLSRSELLALCDLCKRESRLRV 132
Query: 154 IAECGNWRKFMWKPLKEIAGL 174
+ E G R W+P+ + G+
Sbjct: 133 VVEMGGARSLNWQPMSTLLGV 153
>sp|A5GIU6|NDHN_SYNPW NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain WH7803) GN=ndhN PE=3 SV=1
Length = 153
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 42/138 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
++E +A++ P EGG E R L RLR GY SARGLGDPE L + + V P
Sbjct: 13 ELESAGCMAVHAPLEGGAETRLLRRLRAAGYRTHLTSARGLGDPEVFLFQKHGVRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L P++++
Sbjct: 73 HQSVGRGAAVGEVHDVMPLLGEVFLGDKPVVLWLLEGQVLSRSELLSLCDLCRREPRLKI 132
Query: 154 IAECGNWRKFMWKPLKEI 171
+ E G R W+P+ ++
Sbjct: 133 VVEMGGARSLRWQPMTQL 150
>sp|Q2JVL1|NDHN_SYNJA NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp.
(strain JA-3-3Ab) GN=ndhN PE=3 SV=1
Length = 147
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 39/144 (27%)
Query: 65 LLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLT 124
LL +++ +E+ A+AI+ EGG EG YL RLR GY + LS++G+GD + LT
Sbjct: 2 LLVGSGAKFVQQLEQCGALAIFVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLT 61
Query: 125 KVYPVCP---------------------------------------VLSKSELQFLALLP 145
+ V P VLS+ EL +L L
Sbjct: 62 SSHGVRPATLGKSQRRTYFYPSLIEQYRATLPPKAKGLVFWFYEGHVLSRQELSYLVKLS 121
Query: 146 TLRPKVRVIAECGNWRKFMWKPLK 169
V+ + E G R W+PL+
Sbjct: 122 QEDKGVKFVVELGRERSIRWQPLQ 145
>sp|Q7V543|NDHN_PROMM NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9313) GN=ndhN PE=3 SV=1
Length = 153
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 42/140 (30%)
Query: 76 DVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP---- 131
D++ +A++ P EGG E R L RLR GY SARGLGDPE L +++ + P
Sbjct: 13 DLDACGCLAMHVPLEGGSETRLLRRLRAAGYRTQLSSARGLGDPEVFLFELHGIRPPHLG 72
Query: 132 --------------------------------------VLSKSELQFLALLPTLRPKVRV 153
VLS+SEL L L ++RV
Sbjct: 73 HQSVGRNGAVGEVQQVMPQLAELFVDNAPVVLWLLEGQVLSRSELLALCDLCKRESRLRV 132
Query: 154 IAECGNWRKFMWKPLKEIAG 173
+ E G R W+P+ + G
Sbjct: 133 VVEMGGARSLNWQPMSTLLG 152
>sp|A9BCP8|NDHN_PROM4 NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain MIT 9211) GN=ndhN PE=3 SV=1
Length = 153
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 42/139 (30%)
Query: 75 SDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP--- 131
D+E +AI TP EGG E R L RL+ GY S RG GDPE L K++ + P
Sbjct: 12 DDLESACCLAIQTPLEGGAETRLLRRLKAAGYRTQITSVRGFGDPEVFLLKLHGIRPPHL 71
Query: 132 ---------------------------------------VLSKSELQFLALLPTLRPKVR 152
VLS+SEL L L P+++
Sbjct: 72 GHQNIGRNGALGEVQEVIPQLHELLSEEQPLALWLLEGQVLSRSELLALCDLSEKDPQLK 131
Query: 153 VIAECGNWRKFMWKPLKEI 171
++ E G RK W+ +++
Sbjct: 132 IVVEMGGERKLKWQSMRKF 150
>sp|Q7V9W1|NDHN_PROMA NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=ndhN PE=3 SV=1
Length = 152
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 42/140 (30%)
Query: 72 RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
++ D+E +AI P EGG E R L RL+ GY S RGLGDPE L K++ + P
Sbjct: 9 KFRHDLEASGCLAINVPLEGGAETRLLRRLKAAGYKTQITSVRGLGDPEAFLLKLHGIRP 68
Query: 132 ------------------------------------------VLSKSELQFLALLPTLRP 149
VLS+SE+ L L P
Sbjct: 69 PHLGHQNVGRNGALGEVQQVIPQVNELLAGEKSVVLWLLEGQVLSRSEILSLCDLCDKEP 128
Query: 150 KVRVIAECGNWRKFMWKPLK 169
+++++ E G R W+ ++
Sbjct: 129 RLKIVIEMGGARALRWQSMR 148
>sp|P27909|POLG_DEN1B Genome polyprotein OS=Dengue virus type 1 (strain Brazil/97-11/1997)
PE=1 SV=2
Length = 3392
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 16 KIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEI---------GDFIGGDLL 66
K+ + Q+P +N +M + RR+ + S +VG + + +E+ G F +L
Sbjct: 3068 KVVRVQRPAKNGTVMDVISRRDQRGSGQVGTYGLNTFTNMEVQLIRQMESEGIFFPSELE 3127
Query: 67 KPDLG-RWLSDVEKHKA 82
P+L R L +EKH A
Sbjct: 3128 SPNLAERVLDWLEKHGA 3144
>sp|Q929A9|ADDA_LISIN ATP-dependent helicase/nuclease subunit A OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=addA PE=3 SV=1
Length = 1235
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 60 FIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
F+ DL K W+ +V+ HK + + +P++ E R++ Y + D A G+
Sbjct: 960 FLTDDLEKEKSDNWMENVKAHKQVPVKSPYKDEIE-------RFMHYQYKDEEATGI 1009
>sp|P29143|HLY_NATA1 Halolysin OS=Natrialba asiatica (strain ATCC 700177 / DSM 12278 /
JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) GN=hly
PE=1 SV=1
Length = 530
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 7/142 (4%)
Query: 39 KASKRVGVTNCSGNSGIEIGDFIGGDLLK-PDLGRWLSDVEKHKAIAIYTPHEGGYEGRY 97
A+ G++NCS S +GD GG L D +W +D + + + GG+
Sbjct: 212 NATGHAGISNCSLLSARALGDGGGGSLTDIADAIQWSAD--QGADVINMSLGGGGFSQTL 269
Query: 98 LNRLRYL---GYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLALLPTLRPKVRVI 154
N Y G + + G G+ + V V S E + L+ L P++ +
Sbjct: 270 SNACEYAYNQGSLLVAAAGNGYGNSVSYPAAYDTVMAVSSLDEGETLSAFSNLGPEIELA 329
Query: 155 AECGN-WRKFMWKPLKEIAGLT 175
A GN W +G +
Sbjct: 330 APGGNVLSSIPWDNYDTFSGTS 351
>sp|Q8SS49|RL22_ENCCU 60S ribosomal protein L22 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL22 PE=1 SV=1
Length = 112
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 28 MMMQGLRRRNGKASKRVGVTNCSGNSGIEI---GDFIGGDLLKPDLGRWLSDVEKHKAIA 84
+ Q ++ GK K + + N +GN +E+ G FIG LK +GR+L + I
Sbjct: 33 FLQQKIKCYTGKKEKLLHI-NANGNI-VEVDVTGGFIGKQGLKWQIGRFLHMKKLRAFIK 90
Query: 85 IYTPHEGGYEGRYLN 99
I+ G+E RY+N
Sbjct: 91 IFAQGLDGFELRYIN 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,376,539
Number of Sequences: 539616
Number of extensions: 2931573
Number of successful extensions: 5517
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5442
Number of HSP's gapped (non-prelim): 80
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)