Query 030269
Match_columns 180
No_of_seqs 57 out of 59
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 18:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tv8_A MOAA, molybdenum cofact 50.8 23 0.00079 28.2 5.0 60 59-121 71-134 (340)
2 1rlm_A Phosphatase; HAD family 46.5 16 0.00054 27.7 3.2 62 96-157 28-108 (271)
3 3tsm_A IGPS, indole-3-glycerol 35.4 48 0.0016 27.5 4.7 90 67-159 78-178 (272)
4 3pgv_A Haloacid dehalogenase-l 35.0 1.2E+02 0.004 22.9 6.5 63 97-159 46-128 (285)
5 3ixl_A Amdase, arylmalonate de 33.8 52 0.0018 26.0 4.5 93 71-172 106-204 (240)
6 3rjz_A N-type ATP pyrophosphat 31.7 1E+02 0.0035 25.0 6.1 80 56-143 90-171 (237)
7 1p16_A GTP--RNA, mRNA capping 31.2 45 0.0015 28.4 4.0 34 132-167 303-343 (395)
8 2xts_A Sulfite dehydrogenase; 30.8 15 0.00051 32.2 1.0 39 118-161 83-124 (390)
9 2vd8_A Alanine racemase; pyrid 30.1 1E+02 0.0034 25.5 5.8 79 70-157 51-134 (391)
10 3dao_A Putative phosphatse; st 29.6 24 0.00084 26.8 1.9 62 97-158 47-128 (283)
11 2egv_A UPF0088 protein AQ_165; 29.1 36 0.0012 27.1 2.9 35 80-114 176-211 (229)
12 3fy1_A Amcase, TSA1902, acidic 28.9 32 0.0011 28.9 2.7 25 137-161 55-79 (395)
13 2dy3_A Alanine racemase; alpha 28.4 1.2E+02 0.004 24.5 5.8 77 71-158 43-124 (361)
14 2a9d_A Sulfite oxidase; molybd 27.8 34 0.0012 29.6 2.7 40 118-161 53-95 (372)
15 2j01_J 50S ribosomal protein L 27.0 20 0.00067 27.5 0.9 17 132-148 116-132 (173)
16 1vc4_A Indole-3-glycerol phosp 26.8 72 0.0025 25.6 4.3 95 63-161 60-165 (254)
17 3hzr_A Tryptophanyl-tRNA synth 26.8 1.1E+02 0.0036 26.7 5.6 61 69-139 69-138 (386)
18 3vus_A Poly-beta-1,6-N-acetyl- 26.0 41 0.0014 26.9 2.7 36 84-119 205-240 (268)
19 3co8_A Alanine racemase; prote 25.5 1.1E+02 0.0036 25.3 5.2 78 70-157 48-130 (380)
20 3ovp_A Ribulose-phosphate 3-ep 25.3 1.2E+02 0.0042 23.8 5.3 109 61-173 67-188 (228)
21 1jnd_A Imaginal DISC growth fa 25.2 35 0.0012 28.6 2.2 25 137-161 63-87 (420)
22 3i05_A Tryptophanyl-tRNA synth 25.2 1.1E+02 0.0039 26.5 5.6 61 69-139 65-135 (395)
23 2j13_A Polysaccharide deacetyl 25.0 54 0.0018 25.8 3.2 50 64-113 119-178 (247)
24 1vhy_A Hypothetical protein HI 25.0 62 0.0021 26.2 3.6 35 80-114 189-223 (257)
25 1v6z_A Hypothetical protein TT 24.7 56 0.0019 26.0 3.3 35 80-114 173-207 (228)
26 3l7y_A Putative uncharacterize 24.6 43 0.0015 25.7 2.5 66 96-161 62-147 (304)
27 1vf8_A YM1, secretory protein; 24.5 35 0.0012 28.2 2.1 24 138-161 56-79 (377)
28 2obb_A Hypothetical protein; s 24.2 28 0.00097 26.1 1.4 75 95-174 30-115 (142)
29 4gnr_A ABC transporter substra 24.1 53 0.0018 25.1 2.9 53 68-120 183-235 (353)
30 2dgd_A 223AA long hypothetical 24.0 1.1E+02 0.0038 23.0 4.7 49 70-118 96-146 (223)
31 4ay1_A Chitinase-3-like protei 23.7 16 0.00053 29.9 -0.2 23 138-160 57-79 (365)
32 3anu_A D-serine dehydratase; P 23.1 2E+02 0.0068 23.1 6.3 81 72-161 51-143 (376)
33 1vhk_A Hypothetical protein YQ 22.6 59 0.002 26.5 3.0 34 81-114 199-232 (268)
34 1vfs_A Alanine racemase; TIM-b 22.4 62 0.0021 26.6 3.2 79 70-157 46-130 (386)
35 1bd0_A Alanine racemase; isome 21.9 1.2E+02 0.0042 25.1 4.9 79 70-157 47-130 (388)
36 1sox_A Sulfite oxidase; oxidor 21.8 49 0.0017 29.4 2.6 40 118-161 147-189 (466)
37 3p9z_A Uroporphyrinogen III co 21.7 1.9E+02 0.0066 21.9 5.7 24 132-155 167-190 (229)
38 1zav_A 50S ribosomal protein L 21.5 23 0.00079 27.2 0.4 17 132-148 123-139 (180)
39 3qja_A IGPS, indole-3-glycerol 21.4 1.5E+02 0.0052 24.1 5.3 90 67-159 71-171 (272)
40 3qit_A CURM TE, polyketide syn 21.3 72 0.0025 21.8 2.8 23 97-119 45-67 (286)
41 3tze_A Tryptophanyl-tRNA synth 21.0 1.4E+02 0.0049 26.1 5.4 60 69-138 88-157 (406)
42 3kw2_A Probable R-RNA methyltr 20.8 75 0.0026 25.8 3.4 35 80-114 190-224 (257)
43 1wb0_A Chitinase 1, chitotrios 20.7 46 0.0016 28.4 2.1 24 138-161 56-79 (445)
44 3eod_A Protein HNR; response r 20.5 81 0.0028 20.1 2.9 56 98-158 24-87 (130)
45 3sim_A Protein, family 18 chit 20.4 26 0.0009 28.0 0.5 24 138-161 63-86 (275)
No 1
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=50.83 E-value=23 Score=28.17 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=43.3
Q ss_pred ccccCc-ccCcChhhHHHHHHhcc---eeEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCChhh
Q 030269 59 DFIGGD-LLKPDLGRWLSDVEKHK---AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPET 121 (180)
Q Consensus 59 d~iggd-l~~~d~~~FirDLEk~G---aLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpea 121 (180)
.|.||+ |+..|+..+++.+.+.+ -+.|.+- |=.-.++..+|+.+|-..+.+|--|+ |++.
T Consensus 71 ~~tGGEPll~~~l~~li~~~~~~~~~~~i~i~TN--G~ll~~~~~~L~~~g~~~v~iSld~~-~~~~ 134 (340)
T 1tv8_A 71 RITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTN--GLLLKKHGQKLYDAGLRRINVSLDAI-DDTL 134 (340)
T ss_dssp EEESSCGGGSTTHHHHHHHHTTCTTCCEEEEEEC--STTHHHHHHHHHHHTCCEEEEECCCS-SHHH
T ss_pred EEeCCCccchhhHHHHHHHHHhCCCCCeEEEEeC--ccchHHHHHHHHHCCCCEEEEecCCC-CHHH
Confidence 355676 56789999999998875 4566542 33335688999999998899988875 4443
No 2
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=46.47 E-value=16 Score=27.71 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=43.9
Q ss_pred hhHHHhhhcCceEEEeccCCCCChhhhhhhccCCcc-------------------ccCHHHHHHHHcCCCCCCCeEEEEE
Q 030269 96 RYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-------------------VLSKSELQFLALLPTLRPKVRVIAE 156 (180)
Q Consensus 96 Ry~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP-------------------VLS~~ELe~L~~Lp~~ePrvKVVvE 156 (180)
.-+++|+.+|+.....|.|..-+...++.++..-.| -|++++++.+.......+.+.++++
T Consensus 28 ~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~ 107 (271)
T 1rlm_A 28 AQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVAC 107 (271)
T ss_dssp HHHHHHHHHTCEEEEECSSCHHHHGGGCTTTTTTSEEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCcHHHHHHHHHhcCCCCEEEECCccEEEECCeEEEEecCCHHHHHHHHHHHHhCCCccEEEE
Confidence 467889999999999999987766665544321112 4688888888887777766666654
Q ss_pred e
Q 030269 157 C 157 (180)
Q Consensus 157 m 157 (180)
.
T Consensus 108 ~ 108 (271)
T 1rlm_A 108 G 108 (271)
T ss_dssp E
T ss_pred e
Confidence 3
No 3
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=35.44 E-value=48 Score=27.49 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=58.3
Q ss_pred CcChhhHHHHHHhcceeEEecCCCCCc---hhhhHHHhhhcCceEEEeccCC-CCCh-hhhhhhccCCcc------ccCH
Q 030269 67 KPDLGRWLSDVEKHKAIAIYTPHEGGY---EGRYLNRLRYLGYYFLDLSARG-LGDP-ETTLTKVYPVCP------VLSK 135 (180)
Q Consensus 67 ~~d~~~FirDLEk~GaLAvy~PlEGG~---EGRy~RRLRaaGY~t~~~SARG-LGDp-eayLt~vHGVRP------VLS~ 135 (180)
.||...+-+..|+.||-+|.+.-+.+| .-.|++..|.+ ..+.+-.+. +=|+ ..|-...+|.-= .|+.
T Consensus 78 ~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~--v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~ 155 (272)
T 3tsm_A 78 DFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA--CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDD 155 (272)
T ss_dssp SCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHT--SSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCH
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHh--cCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCH
Confidence 479999999999999999999766443 34578888765 112222222 1222 223333334332 7888
Q ss_pred HHHHHHHcCCCCCCCeEEEEEeCC
Q 030269 136 SELQFLALLPTLRPKVRVIAECGN 159 (180)
Q Consensus 136 ~ELe~L~~Lp~~ePrvKVVvEmGG 159 (180)
++++.|....... .+.++||+-.
T Consensus 156 ~~l~~l~~~a~~l-Gl~~lvevh~ 178 (272)
T 3tsm_A 156 DLAKELEDTAFAL-GMDALIEVHD 178 (272)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEECS
T ss_pred HHHHHHHHHHHHc-CCeEEEEeCC
Confidence 8888888776653 7899999853
No 4
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=34.96 E-value=1.2e+02 Score=22.92 Aligned_cols=63 Identities=16% Similarity=-0.009 Sum_probs=45.0
Q ss_pred hHHHhhhcCceEEEeccCCCCChhhhhhhccCCcc--------------------ccCHHHHHHHHcCCCCCCCeEEEEE
Q 030269 97 YLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP--------------------VLSKSELQFLALLPTLRPKVRVIAE 156 (180)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP--------------------VLS~~ELe~L~~Lp~~ePrvKVVvE 156 (180)
-+++|+.+|+.....|.|-.-+...++.++.--.| .|++++++.+..+...++.+.+.+.
T Consensus 46 al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~nGa~i~~~~~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~ 125 (285)
T 3pgv_A 46 TLKLLTARGINFVFATGRHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDPKIVTNVY 125 (285)
T ss_dssp HHHHHHTTTCEEEEECSSCGGGGHHHHHHHCSCCEEEEGGGTEEECTTSCEEEECCCCHHHHHHHTTTTTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCCCccEEEcCCeEEECCCCCEEEecCCCHHHHHHHHHHHhhcCCeEEEEE
Confidence 57888999999999999988877766643321111 4788889998886667777777655
Q ss_pred eCC
Q 030269 157 CGN 159 (180)
Q Consensus 157 mGG 159 (180)
...
T Consensus 126 ~~~ 128 (285)
T 3pgv_A 126 RED 128 (285)
T ss_dssp ETT
T ss_pred cCC
Confidence 443
No 5
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=33.81 E-value=52 Score=25.99 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=59.1
Q ss_pred hhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCChhhhhhhccCCccccCHHHHHHHH-c-CCC
Q 030269 71 GRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQFLA-L-LPT 146 (180)
Q Consensus 71 ~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRPVLS~~ELe~L~-~-Lp~ 146 (180)
+.....+.+.|+ +||-+|-.-=...+|.++|+++|+.......-|+.|...+ | ..+.+++..++ . + .
T Consensus 106 ~A~~~al~~~g~~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~l-~ 176 (240)
T 3ixl_A 106 TAVLNGLRALGVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAM-----A---RVDTATLVDLCVRAF-E 176 (240)
T ss_dssp HHHHHHHHHTTCSEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHH-----H---TCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCCcchh-----h---cCCHHHHHHHHHHHh-h
Confidence 566677777664 9999994333347999999999999888877777653321 1 13455555433 2 3 1
Q ss_pred CCCCe-EEEEEeCCeeeeee-cchHHHh
Q 030269 147 LRPKV-RVIAECGNWRKFMW-KPLKEIA 172 (180)
Q Consensus 147 ~ePrv-KVVvEmGG~R~frW-qPL~~~~ 172 (180)
.+|.+ -||+.|-+-+.+.. +.+++.+
T Consensus 177 ~~~~adaivL~CT~l~~l~~i~~le~~l 204 (240)
T 3ixl_A 177 AAPDSDGILLSSGGLLTLDAIPEVERRL 204 (240)
T ss_dssp TSTTCSEEEEECTTSCCTTHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCchhhhHHHHHHHh
Confidence 23334 47778888887763 4455544
No 6
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=31.74 E-value=1e+02 Score=25.03 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=56.8
Q ss_pred cccccccCcccCcChhhHHHHHHhcceeEEecCCCCCchhhhHHHhhhcCceEEEecc--CCCCChhhhhhhccCCcccc
Q 030269 56 EIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSA--RGLGDPETTLTKVYPVCPVL 133 (180)
Q Consensus 56 ~~~d~iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SA--RGLGDpeayLt~vHGVRPVL 133 (180)
|+--.+=||+.--+.-.++..+=+.=-|-++.||-+=-..-|++.+-+.|+.+.+++. .||+ +.||=+ .|
T Consensus 90 ~i~~vv~Gdi~s~yqr~r~e~vc~~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~gL~--~~~lG~------~l 161 (237)
T 3rjz_A 90 KIQGIVAGALASKYQRKRIEKVAKELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVSAYGLD--ESWLGR------IL 161 (237)
T ss_dssp CCSEEECC---CCSHHHHHHHHHHHTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEESTTCC--GGGTTC------BC
T ss_pred CCcEEEECCcchHHHHHHHHHHHHHcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEecCCCC--hHHCCC------cc
Confidence 4555677888888888888776555457889999998889999999999999998875 5663 457754 35
Q ss_pred CHHHHHHHHc
Q 030269 134 SKSELQFLAL 143 (180)
Q Consensus 134 S~~ELe~L~~ 143 (180)
+.+-++.|..
T Consensus 162 ~~~~~~~L~~ 171 (237)
T 3rjz_A 162 DESALEELIT 171 (237)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6555555543
No 7
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=31.21 E-value=45 Score=28.41 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHcCCCCCCCeEEEEEe-------CCeeeeeecc
Q 030269 132 VLSKSELQFLALLPTLRPKVRVIAEC-------GNWRKFMWKP 167 (180)
Q Consensus 132 VLS~~ELe~L~~Lp~~ePrvKVVvEm-------GG~R~frWqP 167 (180)
-|+++|++.|..+.+..+. -|||| |.||.+||-.
T Consensus 303 ~ltd~e~~~l~~~~~~~~~--~IvEc~~~~~~~g~wr~~R~R~ 343 (395)
T 1p16_A 303 DLSDDDWERLKALEQPLQG--RIAECRQSTTKKGYWEMLRFRN 343 (395)
T ss_dssp CCCHHHHHHHHHSSSCCTT--CEEEEEECSSSTTEEEEEEECT
T ss_pred EeCHHHHHHhHhhcccCCC--EEEEEEeecCCCCccEEEEEeC
Confidence 4899999999887765553 36898 5678888865
No 8
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=30.84 E-value=15 Score=32.24 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=28.9
Q ss_pred ChhhhhhhccCC--cc-ccCHHHHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 118 DPETTLTKVYPV--CP-VLSKSELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 118 DpeayLt~vHGV--RP-VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
|++.|-+.|||- +| .||-+||. .||+.+ +.+.++|.|.|
T Consensus 83 d~~~w~L~V~G~V~~p~~ltl~dL~---~lp~~~--~~~~l~C~gn~ 124 (390)
T 2xts_A 83 SKQDYRLMINGLVEKPLVFTFEDLL---RFPRTT--TTAFCECAANG 124 (390)
T ss_dssp CTTTCCEEEEESBSSCEEECHHHHT---TSCCEE--EEEEEECTTTT
T ss_pred CCCCeEEEEEeEcCCCeEEcHHHHh---cCCCEE--EEEEEEecCCc
Confidence 788899999993 57 89998875 566654 45678886654
No 9
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=30.09 E-value=1e+02 Score=25.49 Aligned_cols=79 Identities=14% Similarity=-0.095 Sum_probs=48.3
Q ss_pred hhhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCCC--ChhhhhhhccCCcc-ccCHHHHHHHHcC
Q 030269 70 LGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLG--DPETTLTKVYPVCP-VLSKSELQFLALL 144 (180)
Q Consensus 70 ~~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLG--DpeayLt~vHGVRP-VLS~~ELe~L~~L 144 (180)
.....+-|.+.|+ +++-.+-|. .+||.+|...-++-.-.+. +.+.. . .|++.+ |=|.++++.|...
T Consensus 51 ~~~v~~~l~~~G~~~f~vas~~Ea-------~~lr~~G~~~~il~~g~~~~~~~~~~-~-~~~i~~~vds~~~l~~l~~a 121 (391)
T 2vd8_A 51 YVPVAXIALEAGATRLAVAFLDEA-------LVLRRAGITAPILVLGPSPPRDINVA-A-ENDVALTVFQXEWVDEAIXL 121 (391)
T ss_dssp HHHHHHHHHHTTCCEEEESSHHHH-------HHHHHTTCCSCEEECSCCCGGGHHHH-H-HTTEEEECCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCeEEeecHHHH-------HHHHhcCCCCceEEecCCChHHHHHH-H-HCCeEEEEcCHHHHHHHHHH
Confidence 3456677888886 777666552 4677889874222222232 22222 2 388888 7788889999872
Q ss_pred CCCCCCeEEEEEe
Q 030269 145 PTLRPKVRVIAEC 157 (180)
Q Consensus 145 p~~ePrvKVVvEm 157 (180)
.+....++|.+++
T Consensus 122 ~~~~~~~~V~lkv 134 (391)
T 2vd8_A 122 WDGSSTMXYHINF 134 (391)
T ss_dssp CCSSCCEEEEEEB
T ss_pred HhcCCceEEEEEE
Confidence 2334557777765
No 10
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=29.62 E-value=24 Score=26.82 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=43.2
Q ss_pred hHHHhhhcCceEEEeccCCCCChhhhhhhccCCcc-------------------ccCHHHHHHHHcCCCCC-CCeEEEEE
Q 030269 97 YLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-------------------VLSKSELQFLALLPTLR-PKVRVIAE 156 (180)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP-------------------VLS~~ELe~L~~Lp~~e-PrvKVVvE 156 (180)
-+++|+.+|+.....|.|..-+...++.++..-.| -|++++++.+...-... |.+.++++
T Consensus 47 al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 47 VIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDEDIWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 46788999999999999988777776665432222 45677777666655543 77887776
Q ss_pred eC
Q 030269 157 CG 158 (180)
Q Consensus 157 mG 158 (180)
..
T Consensus 127 ~~ 128 (283)
T 3dao_A 127 TP 128 (283)
T ss_dssp CS
T ss_pred eC
Confidence 54
No 11
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=29.12 E-value=36 Score=27.11 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.8
Q ss_pred cc-eeEEecCCCCCchhhhHHHhhhcCceEEEeccC
Q 030269 80 HK-AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (180)
Q Consensus 80 ~G-aLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (180)
.+ .+.|..=+||||.-.=...++++|+..+.+--|
T Consensus 176 ~~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 211 (229)
T 2egv_A 176 EAKTYSVVVGPEGGFSKRESQILREKGFKSVLLEPY 211 (229)
T ss_dssp TCSEEEEEECCTTCCCHHHHHHHHHTTCEEECCSSS
T ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 45 789999999999999999999999988876443
No 12
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A*
Probab=28.95 E-value=32 Score=28.89 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.7
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 137 ELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 137 ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
-++.+..|-++.|.|||++-+|||-
T Consensus 55 ~~~~~~~lK~~~p~lKvllSiGGw~ 79 (395)
T 3fy1_A 55 LYQAFNGLKNKNSQLKTLLAIGGWN 79 (395)
T ss_dssp HHHHHHHGGGSCTTCEEEEEEECGG
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 4567888889999999999999984
No 13
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=28.37 E-value=1.2e+02 Score=24.51 Aligned_cols=77 Identities=18% Similarity=0.069 Sum_probs=48.4
Q ss_pred hhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCC--CChhhhhhhccCCcc-ccCHHHHHHHHcCC
Q 030269 71 GRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL--GDPETTLTKVYPVCP-VLSKSELQFLALLP 145 (180)
Q Consensus 71 ~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGL--GDpeayLt~vHGVRP-VLS~~ELe~L~~Lp 145 (180)
....+-|.+.|+ +++-.+-| ...+|.+|...-.+-.-+. .+.+..+ .|++.+ |=|.+|++.|..+.
T Consensus 43 ~~i~~~l~~~G~~~~~vas~~E-------~~~~~~~G~~~~il~~~~~~~~~~~~~~--~~~i~~~vds~~~l~~l~~~a 113 (361)
T 2dy3_A 43 EKVAPVIAAHGADAFGVATLAE-------AMQLRDIGISQEVLCWIWTPEQDFRAAI--DRNIDLAVISPAHAKALIETD 113 (361)
T ss_dssp HHHHHHHHHTTCCEEEESSHHH-------HHHHHHTTCCSEEEECCCCTTSCHHHHH--TTTCEEEECSHHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCEEEEeEHHH-------HHHHHhcCCCCCEEEECCCCHHHHHHHH--HcCCEEEECCHHHHHHHHHhC
Confidence 456667777785 55555443 3456777886322322333 3443333 388988 67889999999887
Q ss_pred CCCCCeEEEEEeC
Q 030269 146 TLRPKVRVIAECG 158 (180)
Q Consensus 146 ~~ePrvKVVvEmG 158 (180)
.. +++|.+++-
T Consensus 114 ~~--~~~v~l~vd 124 (361)
T 2dy3_A 114 AE--HIRVSIKID 124 (361)
T ss_dssp CS--CEEEEEEBC
T ss_pred cc--CCEEEEEEe
Confidence 66 577777753
No 14
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Probab=27.80 E-value=34 Score=29.60 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=28.2
Q ss_pred ChhhhhhhccCC--cc-ccCHHHHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 118 DPETTLTKVYPV--CP-VLSKSELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 118 DpeayLt~vHGV--RP-VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
|++.|-+.|+|- +| .||-+||. ..||+.+ +.+.+||.|.|
T Consensus 53 d~~~w~L~V~G~V~~p~~ltl~dL~--~~lp~~~--~~~~l~C~gN~ 95 (372)
T 2a9d_A 53 EPSSYRLRVDGPGGRTLSLSLAELR--SRFPKHE--VTATLQCAGNR 95 (372)
T ss_dssp CTTTCEEEEECC---CEEEEHHHHH--HHSCCEE--EEEEEECTTTT
T ss_pred cCCCeEEEEEeEcCCceEEeHHHHH--hhCCCeE--EEEEEEecCCc
Confidence 788999999993 57 89988876 1466543 44567887754
No 15
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=27.04 E-value=20 Score=27.46 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=16.0
Q ss_pred ccCHHHHHHHHcCCCCC
Q 030269 132 VLSKSELQFLALLPTLR 148 (180)
Q Consensus 132 VLS~~ELe~L~~Lp~~e 148 (180)
+||.+|++.|++||++|
T Consensus 116 ~~~~~~v~~la~LPs~e 132 (173)
T 2j01_J 116 ILTAKDVEALAELPTMD 132 (173)
T ss_pred EcCHHHHHHHhcCCCHH
Confidence 99999999999999875
No 16
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=26.83 E-value=72 Score=25.60 Aligned_cols=95 Identities=16% Similarity=0.004 Sum_probs=60.9
Q ss_pred CcccCcChhhHHHHHHhcceeEEecCCCCCc---hhhhHHHhhhcCceEEEeccC-CCCCh-hhhhhhccCCcc------
Q 030269 63 GDLLKPDLGRWLSDVEKHKAIAIYTPHEGGY---EGRYLNRLRYLGYYFLDLSAR-GLGDP-ETTLTKVYPVCP------ 131 (180)
Q Consensus 63 gdl~~~d~~~FirDLEk~GaLAvy~PlEGG~---EGRy~RRLRaaGY~t~~~SAR-GLGDp-eayLt~vHGVRP------ 131 (180)
|++-.+|.-.+.+..|+.||=+|.+.-+-+| .-.|++.+|.+ ..+.+-.+ ++=|+ ..+....+|.-=
T Consensus 60 g~i~~~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~--v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 60 GLIREVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREA--VDLPLLRKDFVVDPFMLEEARAFGASAALLIVA 137 (254)
T ss_dssp CCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHH--CCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHH
T ss_pred CcCCCCCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHh--cCCCEEECCcCCCHHHHHHHHHcCCCEEEECcc
Confidence 3444479999999999999999999655443 34578888874 12222222 34555 445555555543
Q ss_pred ccCHHHHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 132 VLSKSELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 132 VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
.|+ ++++.|....... .+-++||+-++.
T Consensus 138 ~l~-~~l~~l~~~a~~l-Gl~~lvev~~~~ 165 (254)
T 1vc4_A 138 LLG-ELTGAYLEEARRL-GLEALVEVHTER 165 (254)
T ss_dssp HHG-GGHHHHHHHHHHH-TCEEEEEECSHH
T ss_pred chH-HHHHHHHHHHHHC-CCeEEEEECCHH
Confidence 567 7788777644333 588889998763
No 17
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=26.76 E-value=1.1e+02 Score=26.73 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=42.1
Q ss_pred ChhhHHHHHHhcceeEEec-------CCCCCchhh-hHHHhhhc-CceEEEeccCCCCChhhhhhhccCCccccCHHHHH
Q 030269 69 DLGRWLSDVEKHKAIAIYT-------PHEGGYEGR-YLNRLRYL-GYYFLDLSARGLGDPETTLTKVYPVCPVLSKSELQ 139 (180)
Q Consensus 69 d~~~FirDLEk~GaLAvy~-------PlEGG~EGR-y~RRLRaa-GY~t~~~SARGLGDpeayLt~vHGVRPVLS~~ELe 139 (180)
|+++++..+|+.+-+.||. ++=|=+-+= .+++|..+ |-....+ |+|+++|++ || ++.+|+.
T Consensus 69 d~~~ll~~~~~~~~~~vysG~~PTG~lHLGh~v~~~~~~~lQ~~~g~~v~i~----I~D~~a~~~-----r~-~~~e~i~ 138 (386)
T 3hzr_A 69 SLDKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQ----ILDDIKVLN-----RE-ATINEAS 138 (386)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCCSSCBGGGHHHHHHHHHHHHHHCCEEEEE----ECHHHHHHT-----TS-CCHHHHH
T ss_pred cHHHHHHHHhcCCCeEEEeccCCCCCccHHHHHHHHHHHHHHHhcCCeEEEE----eCchHHhhc-----CC-CCHHHHH
Confidence 7888888898888888885 333433332 56778776 5444444 999999995 56 6666655
No 18
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=26.04 E-value=41 Score=26.88 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=32.9
Q ss_pred EEecCCCCCchhhhHHHhhhcCceEEEeccCCCCCh
Q 030269 84 AIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDP 119 (180)
Q Consensus 84 Avy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDp 119 (180)
-.|+|+-|-+-.+.++-++.+||.+..++.+|.-++
T Consensus 205 ~~fr~PyG~~n~~~~~~~~~~Gy~~a~t~~~g~~~~ 240 (268)
T 3vus_A 205 HVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANA 240 (268)
T ss_dssp CEEECGGGCCCHHHHHHHHHTTCCEEECCCSSCEET
T ss_pred CEEEeCCCcCCHHHHHHHHHCCCcEEEEecCCcCCC
Confidence 479999999999999999999999999999998654
No 19
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=25.51 E-value=1.1e+02 Score=25.26 Aligned_cols=78 Identities=17% Similarity=0.024 Sum_probs=48.5
Q ss_pred hhhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCCC--ChhhhhhhccCCcc-ccCHHHHHHHHcC
Q 030269 70 LGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLG--DPETTLTKVYPVCP-VLSKSELQFLALL 144 (180)
Q Consensus 70 ~~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLG--DpeayLt~vHGVRP-VLS~~ELe~L~~L 144 (180)
.....+-|.+.|+ +++-.+-|. .+||.+|...-.+-...+. +.+. +. .|++.+ |=|.++++.|..+
T Consensus 48 ~~~i~~~l~~~G~~~~~vas~~Ea-------~~l~~aG~~~~il~~g~~~~~~~~~-~~-~~~i~~~vds~~~l~~l~~~ 118 (380)
T 3co8_A 48 LLQVSKIARECGVDGLAVSVLDEG-------IAIRQAGIDDFILILGPIDVKYAPI-AS-KYHFLTTVSSLDWLKSADKI 118 (380)
T ss_dssp HHHHHHHHGGGTCCEEEESSHHHH-------HHHHHTTCCCCEEECSCCCGGGHHH-HH-HTTCEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeHHHH-------HHHHhcCCCCCEEEECCCCHHHHHH-HH-HCCCEEEECCHHHHHHHHHh
Confidence 3456677888886 777766553 5677889862222222232 2222 22 368888 6788889999875
Q ss_pred CCCCCCeEEEEEe
Q 030269 145 PTLRPKVRVIAEC 157 (180)
Q Consensus 145 p~~ePrvKVVvEm 157 (180)
.... .++|.+++
T Consensus 119 a~~~-~~~V~l~v 130 (380)
T 3co8_A 119 LGKE-KLSVNLAV 130 (380)
T ss_dssp CTTC-CEEEEEEB
T ss_pred cccC-CceEEEEE
Confidence 5544 67777775
No 20
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=25.28 E-value=1.2e+02 Score=23.84 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred ccCcccCcChhhHHHHHHhcceeEEecCCCCCc-hhhhHHHhhhcCceEEEeccCC--CCChhhhhhh-----ccCCcc-
Q 030269 61 IGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGY-EGRYLNRLRYLGYYFLDLSARG--LGDPETTLTK-----VYPVCP- 131 (180)
Q Consensus 61 iggdl~~~d~~~FirDLEk~GaLAvy~PlEGG~-EGRy~RRLRaaGY~t~~~SARG--LGDpeayLt~-----vHGVRP- 131 (180)
+.=+|.--|.+.|++++-+.||=.|.++.|.+- --|+.+.+|..|...-...... +-..+.|+.. +..|-|
T Consensus 67 ~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pG 146 (228)
T 3ovp_A 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPG 146 (228)
T ss_dssp EEEEEECSCGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTT
T ss_pred EEEEEEeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCC
Confidence 333455567789999999999999999888764 2589999999998765543322 2222223221 334556
Q ss_pred ----ccCHHHHHHHHcCCCCCCCeEEEEEeCCeeeeeecchHHHhc
Q 030269 132 ----VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 173 (180)
Q Consensus 132 ----VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R~frWqPL~~~~~ 173 (180)
.++.+.++.+..|-+..+++.|.|- ||-+ -+-.++++.
T Consensus 147 f~Gq~f~~~~l~ki~~lr~~~~~~~I~Vd-GGI~---~~t~~~~~~ 188 (228)
T 3ovp_A 147 FGGQKFMEDMMPKVHWLRTQFPSLDIEVD-GGVG---PDTVHKCAE 188 (228)
T ss_dssp TCSCCCCGGGHHHHHHHHHHCTTCEEEEE-SSCS---TTTHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCEEEe-CCcC---HHHHHHHHH
Confidence 5666676666666655666655442 4443 344444443
No 21
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep heparin, hormone-growth factor complex; HET: NAG BMA MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1 PDB: 1jne_A*
Probab=25.24 E-value=35 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.1
Q ss_pred HHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 137 ELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 137 ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
.+..|..|-++.|.+||++-+|||-
T Consensus 63 ~~~~~~~lk~~~p~lKvllsiGGw~ 87 (420)
T 1jnd_A 63 QFSEVTSLKRKYPHLKVLLSVGGDH 87 (420)
T ss_dssp HHHHHHGGGGTSTTCEEEEEEETTC
T ss_pred HHHHHHHHHhhCCCceEEEEeCCCc
Confidence 4667888999999999999999985
No 22
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=25.16 E-value=1.1e+02 Score=26.53 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=41.1
Q ss_pred ChhhHHHHHHhcceeEEec---CC-----CCCchh-hhHHHhhhc-CceEEEeccCCCCChhhhhhhccCCccccCHHHH
Q 030269 69 DLGRWLSDVEKHKAIAIYT---PH-----EGGYEG-RYLNRLRYL-GYYFLDLSARGLGDPETTLTKVYPVCPVLSKSEL 138 (180)
Q Consensus 69 d~~~FirDLEk~GaLAvy~---Pl-----EGG~EG-Ry~RRLRaa-GY~t~~~SARGLGDpeayLt~vHGVRPVLS~~EL 138 (180)
|+++.+..+|+.+-+.||. |- =|=+-+ ..+++|..+ |-....+ +||+++|++ || ++.+|+
T Consensus 65 d~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~----I~D~~~~l~-----~~-~~~e~i 134 (395)
T 3i05_A 65 DLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQ----MTDDEKFYF-----RN-IPMEQV 134 (395)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEE----ECHHHHHHH-----SC-CCHHHH
T ss_pred cHHHHHHHHhcCCCeEEEEeecCCCccchHHHHHHHHHHHHHHHhcCCcEEEE----EcchHHHhc-----CC-CCHHHH
Confidence 6788888888877888875 22 222323 466778877 4444443 999999998 45 677776
Q ss_pred H
Q 030269 139 Q 139 (180)
Q Consensus 139 e 139 (180)
+
T Consensus 135 ~ 135 (395)
T 3i05_A 135 E 135 (395)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=25.02 E-value=54 Score=25.80 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.7
Q ss_pred cccCcChhhHHHHHHhc--------ce--eEEecCCCCCchhhhHHHhhhcCceEEEecc
Q 030269 64 DLLKPDLGRWLSDVEKH--------KA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSA 113 (180)
Q Consensus 64 dl~~~d~~~FirDLEk~--------Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SA 113 (180)
++-..+...+.+||++. |. .-.|.|+-|-+-.+.++-|+..||.+...|.
T Consensus 119 ~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~wsv 178 (247)
T 2j13_A 119 DFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVFWSL 178 (247)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEECCSE
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEecCc
Confidence 45556777777777653 43 4578999999999999999999999887664
No 24
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=24.97 E-value=62 Score=26.23 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.9
Q ss_pred cceeEEecCCCCCchhhhHHHhhhcCceEEEeccC
Q 030269 80 HKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (180)
Q Consensus 80 ~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (180)
.+.++|..=+||||.-.=...++++|+..+.+--|
T Consensus 189 ~~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 223 (257)
T 1vhy_A 189 AGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKR 223 (257)
T ss_dssp TTCEEEEECCTTCCCHHHHHHHHHTTCEEEBCCSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 35789999999999999999999999988876443
No 25
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=24.72 E-value=56 Score=25.95 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.9
Q ss_pred cceeEEecCCCCCchhhhHHHhhhcCceEEEeccC
Q 030269 80 HKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (180)
Q Consensus 80 ~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (180)
.+.+.|..=+||||.-.=...++++|+..+.+--|
T Consensus 173 ~~~~~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 207 (228)
T 1v6z_A 173 EKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRR 207 (228)
T ss_dssp TSCEEEEECCTTCCCHHHHHHHHHHTEEEECCCSS
T ss_pred CCcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 35789999999999999999999999988876443
No 26
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=24.65 E-value=43 Score=25.73 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=45.8
Q ss_pred hhHHHhhhcCceEEEeccCCCCChhhhhhhccCCcc-------------------ccCHHHHHHHHcCCCC-CCCeEEEE
Q 030269 96 RYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-------------------VLSKSELQFLALLPTL-RPKVRVIA 155 (180)
Q Consensus 96 Ry~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP-------------------VLS~~ELe~L~~Lp~~-ePrvKVVv 155 (180)
.-+++|+.+|+.....|.|-.-+...++..+..-.| .+++++++.+...-.. .|.+.+++
T Consensus 62 ~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~ 141 (304)
T 3l7y_A 62 RILKQLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQREDIASIIYFIEEKYPQAVIAL 141 (304)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHTTCTTTGGGSEEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCCcEEeCCCcEEEECCEEEEEecCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 457889999999999999987777666655432122 4577777777665544 37888888
Q ss_pred EeCCee
Q 030269 156 ECGNWR 161 (180)
Q Consensus 156 EmGG~R 161 (180)
+.....
T Consensus 142 ~~~~~~ 147 (304)
T 3l7y_A 142 SGEKKG 147 (304)
T ss_dssp EESSCE
T ss_pred EcCCCE
Confidence 765543
No 27
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity, functional versatility, immune system; 1.31A {Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Probab=24.51 E-value=35 Score=28.24 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCee
Q 030269 138 LQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 138 Le~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
+..|..|-++.|.+||++-+|||-
T Consensus 56 ~~~~~~lk~~~~~lkvllsiGG~~ 79 (377)
T 1vf8_A 56 YEALNGLKDKNTELKTLLAIGGWK 79 (377)
T ss_dssp HHHHHHGGGTCTTCEEEEEEECTT
T ss_pred HHHHHHHHhhCCCCeEEEEECCCC
Confidence 566788888999999999999974
No 28
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=24.17 E-value=28 Score=26.08 Aligned_cols=75 Identities=15% Similarity=0.012 Sum_probs=45.8
Q ss_pred hhhHHHhhhcCceEEEeccCC---CCChhhhhhhccCCcc-ccCH--HH-HHHHHcCCCCCCCeEEEEEeCCeeee----
Q 030269 95 GRYLNRLRYLGYYFLDLSARG---LGDPETTLTKVYPVCP-VLSK--SE-LQFLALLPTLRPKVRVIAECGNWRKF---- 163 (180)
Q Consensus 95 GRy~RRLRaaGY~t~~~SARG---LGDpeayLt~vHGVRP-VLS~--~E-Le~L~~Lp~~ePrvKVVvEmGG~R~f---- 163 (180)
-..+++|+++||.....|+|. +-....|| ..||+.- +++. .| .. ...=-.+.|.+.+.|| ||.+
T Consensus 30 ~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l-~~~gi~~~~I~~n~P~~~~-~~~~~~rK~~~~~fID---DR~~~~~~ 104 (142)
T 2obb_A 30 VETLKLLQQEKHRLILWSVREGELLDEAIEWC-RARGLEFYAANKDYPEEER-DHQGFSRKLKADLFID---DRNVGGIP 104 (142)
T ss_dssp HHHHHHHHHTTCEEEECCSCCHHHHHHHHHHH-HTTTCCCSEESSSSTTC----CCSCCSSCCCSEEEC---TTSTTCCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCcccHHHHHHHH-HHcCCCeEEEEcCCchhhh-cchhhcCCcCCCEEee---ccccCCCC
Confidence 467899999999999999996 45555664 4578753 2221 11 11 2111134577788887 6765
Q ss_pred eecchHHHhcc
Q 030269 164 MWKPLKEIAGL 174 (180)
Q Consensus 164 rWqPL~~~~~a 174 (180)
.|....+++..
T Consensus 105 dw~~i~~~~~~ 115 (142)
T 2obb_A 105 DWGIIYEMIKE 115 (142)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 46655555543
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=24.09 E-value=53 Score=25.10 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=44.4
Q ss_pred cChhhHHHHHHhcceeEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCChh
Q 030269 68 PDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPE 120 (180)
Q Consensus 68 ~d~~~FirDLEk~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpe 120 (180)
-|....+..+.+.++=+|+.+.-+.--....+.++..|+....+..-+..+++
T Consensus 183 ~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 235 (353)
T 4gnr_A 183 TDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEE 235 (353)
T ss_dssp CCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSCEEECGGGCSHH
T ss_pred CCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCcEEEecccccch
Confidence 47888999999999999999988887888999999999988777666666554
No 30
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=23.97 E-value=1.1e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=39.0
Q ss_pred hhhHHHHHHhcc--eeEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCC
Q 030269 70 LGRWLSDVEKHK--AIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118 (180)
Q Consensus 70 ~~~FirDLEk~G--aLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGD 118 (180)
.+.....+...| -+||.+|..-=...+|.++|++.|+......+-++-|
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~ 146 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFEIVGYDGLGKIR 146 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCEEEEEEECCCCS
T ss_pred HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCCcEEecccCCCCCC
Confidence 777888887655 6999998774446699999999999988877777654
No 31
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=23.73 E-value=16 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCe
Q 030269 138 LQFLALLPTLRPKVRVIAECGNW 160 (180)
Q Consensus 138 Le~L~~Lp~~ePrvKVVvEmGG~ 160 (180)
++.+..|-++.|.|||++=+|||
T Consensus 57 ~~~~~~lK~~~p~lKvllSiGGw 79 (365)
T 4ay1_A 57 YQTINSLKTKNPKLKILLSIGGY 79 (365)
T ss_dssp HHHHHHHHHHCTTCEEEEEEEET
T ss_pred HHHHHHHHHHCCCCEEEEEEeCC
Confidence 46677888899999999999997
No 32
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=23.07 E-value=2e+02 Score=23.13 Aligned_cols=81 Identities=17% Similarity=-0.033 Sum_probs=48.4
Q ss_pred hHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCCCChhh--hhhh----ccCCcc-ccCHHHHHHHH
Q 030269 72 RWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPET--TLTK----VYPVCP-VLSKSELQFLA 142 (180)
Q Consensus 72 ~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpea--yLt~----vHGVRP-VLS~~ELe~L~ 142 (180)
...+-+.+.|+ +++..+-| ...+|.+|.....+ +-|.- ++. ++.+ .+++.+ |=|.+|++.|.
T Consensus 51 ~i~~~l~~~G~~~~~vas~~E-------a~~~~~~G~~~ii~-~~~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~ 121 (376)
T 3anu_A 51 EGGLLATGGTRRGIAVSTLAE-------ARFFADGGFDDILL-AYPVP-TARLEECAGLARRLDAFHVLLDRPEALASLR 121 (376)
T ss_dssp HHHHHHTTTCCEEEEESSHHH-------HHHHHHTTCEEEEE-EEECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHH
T ss_pred HHHHHHHHCCCCeEEEccHHH-------HHHHHHCCCCeEEE-ECCCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHH
Confidence 44556666775 55555444 34567789885544 33333 322 2222 178888 67888999998
Q ss_pred cCCCC-CCCeEEEEEe--CCee
Q 030269 143 LLPTL-RPKVRVIAEC--GNWR 161 (180)
Q Consensus 143 ~Lp~~-ePrvKVVvEm--GG~R 161 (180)
...+. ..+++|.+|+ |..|
T Consensus 122 ~~a~~~~~~~~V~l~vd~g~~R 143 (376)
T 3anu_A 122 QRPLGHGKRWLVWLKLDCGNGR 143 (376)
T ss_dssp TSCCCTTCCEEEEEEECCC--C
T ss_pred HHHHhCCCceEEEEEECCCCCc
Confidence 87643 4567888775 4444
No 33
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=22.55 E-value=59 Score=26.52 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=29.3
Q ss_pred ceeEEecCCCCCchhhhHHHhhhcCceEEEeccC
Q 030269 81 KAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (180)
Q Consensus 81 GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (180)
..+.|..=+||||.-.=...++++|+..+.+--|
T Consensus 199 ~~i~l~IGPEGGfs~~Ei~~~~~~G~~~vsLG~r 232 (268)
T 1vhk_A 199 SSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGPR 232 (268)
T ss_dssp CEEEEEECCTTCCCHHHHHHHHHTTCEEECCCSS
T ss_pred CcEEEEEcCCCCCCHHHHHHHHHCCCEEecCCCC
Confidence 3789999999999999999999999988876444
No 34
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=22.41 E-value=62 Score=26.63 Aligned_cols=79 Identities=13% Similarity=-0.033 Sum_probs=49.8
Q ss_pred hhhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceEEEeccCCCC--ChhhhhhhccCCcc-ccCHHHHHHHHcC
Q 030269 70 LGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLG--DPETTLTKVYPVCP-VLSKSELQFLALL 144 (180)
Q Consensus 70 ~~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t~~~SARGLG--DpeayLt~vHGVRP-VLS~~ELe~L~~L 144 (180)
.....+-|.+.|+ +++-.+-|. .++|.+|...-.+-.-++. +.+..+ + +++.+ |=|.+|++.|...
T Consensus 46 ~~~i~~~l~~~G~~~f~vas~~Ea-------~~~~~~G~~~~il~~~~~~~~~~~~~~-~-~~i~~~vds~~~l~~l~~~ 116 (386)
T 1vfs_A 46 AVPCARAAQEAGAAWLGTATPEEA-------LELRAAGIQGRIMCWLWTPGGPWREAI-E-TDIDVSVSGMWALDEVRAA 116 (386)
T ss_dssp HHHHHHHHHHHTCCEEEESSHHHH-------HHHHHTTCCSEEEECCCCTTCCHHHHH-H-TTCEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeeHHHH-------HHHHhcCCCCCEEEECCCCHHHHHHHH-H-cCCEEEECCHHHHHHHHHH
Confidence 3456667777786 777766553 5677889864233334453 344333 3 78888 6788889988876
Q ss_pred CC-CCCCeEEEEEe
Q 030269 145 PT-LRPKVRVIAEC 157 (180)
Q Consensus 145 p~-~ePrvKVVvEm 157 (180)
.+ ...+++|.+++
T Consensus 117 a~~~~~~~~V~l~v 130 (386)
T 1vfs_A 117 ARAAGRTARIQLKA 130 (386)
T ss_dssp HHHHTSCEEEEEEB
T ss_pred HHhcCCceEEEEEE
Confidence 43 34556777664
No 35
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=21.87 E-value=1.2e+02 Score=25.06 Aligned_cols=79 Identities=16% Similarity=-0.010 Sum_probs=47.9
Q ss_pred hhhHHHHHHhcce--eEEecCCCCCchhhhHHHhhhcCceE--EEeccCCCCChhhhhhhccCCcc-ccCHHHHHHHHcC
Q 030269 70 LGRWLSDVEKHKA--IAIYTPHEGGYEGRYLNRLRYLGYYF--LDLSARGLGDPETTLTKVYPVCP-VLSKSELQFLALL 144 (180)
Q Consensus 70 ~~~FirDLEk~Ga--LAvy~PlEGG~EGRy~RRLRaaGY~t--~~~SARGLGDpeayLt~vHGVRP-VLS~~ELe~L~~L 144 (180)
.....+-|.+.|+ +++-.+-| . .+||.+|... +.+...--.+.+. +. .|++.+ |=|.+|++.|...
T Consensus 47 ~~~v~~~l~~~G~~~f~vas~~E----a---~~lr~aG~~~~Il~~g~~~~~~~~~-~~-~~~i~~~vds~~~l~~l~~~ 117 (388)
T 1bd0_A 47 DVQVARTALEAGASRLAVAFLDE----A---LALREKGIEAPILVLGASRPADAAL-AA-QQRIALTVFRSDWLEEASAL 117 (388)
T ss_dssp HHHHHHHHHHHTCCEEEESSHHH----H---HHHHHTTCCSCEEECSCCCGGGHHH-HH-HTTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeeHHH----H---HHHHhCCcCCCEEEECCCCHHHHHH-HH-HcCCEEEECCHHHHHHHHHH
Confidence 3456677778886 77766544 3 4677888863 3321111122222 22 388988 7788899999876
Q ss_pred CCCCCCeEEEEEe
Q 030269 145 PTLRPKVRVIAEC 157 (180)
Q Consensus 145 p~~ePrvKVVvEm 157 (180)
.+...+++|.+++
T Consensus 118 a~~~~~~~V~lkv 130 (388)
T 1bd0_A 118 YSGPFPIHFHLKM 130 (388)
T ss_dssp CCCSSCEEEEEEB
T ss_pred hccCCCeEEEEEE
Confidence 5344557777765
No 36
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=21.81 E-value=49 Score=29.43 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=27.8
Q ss_pred ChhhhhhhccC-C-cc-ccCHHHHHHHHcCCCCCCCeEEEEEeCCee
Q 030269 118 DPETTLTKVYP-V-CP-VLSKSELQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 118 DpeayLt~vHG-V-RP-VLS~~ELe~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
|++.|-+.|+| | +| .||-+||.. .||+.+ +.+.++|.|.|
T Consensus 147 d~~~w~L~V~G~V~~p~~ltl~dL~~--~lp~~~--~~~~l~C~gN~ 189 (466)
T 1sox_A 147 EPSSYRLRVDGPGGGTLSLSLAELRS--RFPKHE--VTATLQCAGNR 189 (466)
T ss_dssp CGGGCEEEEECTTSCCEEEEHHHHHH--HSCEEE--EEEEEECTTTT
T ss_pred CCCCeEEEEecccCCceEeeHHHHHh--hCCCeE--EEEEEEecCCC
Confidence 77888888988 3 56 899888871 456542 44667887644
No 37
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=21.75 E-value=1.9e+02 Score=21.91 Aligned_cols=24 Identities=8% Similarity=-0.034 Sum_probs=16.6
Q ss_pred ccCHHHHHHHHcCCCCCCCeEEEE
Q 030269 132 VLSKSELQFLALLPTLRPKVRVIA 155 (180)
Q Consensus 132 VLS~~ELe~L~~Lp~~ePrvKVVv 155 (180)
.-|.+-++++..+-....++++++
T Consensus 167 ftS~s~v~~~~~~~~~~~~~~~~a 190 (229)
T 3p9z_A 167 FTAISHAKAFLHYFEFLENYTAIS 190 (229)
T ss_dssp ECSHHHHHHHHHHSCCCTTCEEEE
T ss_pred EECHHHHHHHHHHhCcccCCEEEE
Confidence 558899988877655445667664
No 38
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=21.51 E-value=23 Score=27.22 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=15.9
Q ss_pred ccCHHHHHHHHcCCCCC
Q 030269 132 VLSKSELQFLALLPTLR 148 (180)
Q Consensus 132 VLS~~ELe~L~~Lp~~e 148 (180)
+||.+|++.|++||++|
T Consensus 123 ~~~~~~v~~la~LPs~e 139 (180)
T 1zav_A 123 KFTAEEVENIAKLPSKE 139 (180)
T ss_dssp EEEHHHHHHHHTCCCHH
T ss_pred EcCHHHHHHHhcCCCHH
Confidence 99999999999999865
No 39
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.40 E-value=1.5e+02 Score=24.09 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=60.3
Q ss_pred CcChhhHHHHHHhcceeEEecCCCCCc-hh--hhHHHhhhcCceEEEeccC-CCCChh-hhhhhccCCcc------ccCH
Q 030269 67 KPDLGRWLSDVEKHKAIAIYTPHEGGY-EG--RYLNRLRYLGYYFLDLSAR-GLGDPE-TTLTKVYPVCP------VLSK 135 (180)
Q Consensus 67 ~~d~~~FirDLEk~GaLAvy~PlEGG~-EG--Ry~RRLRaaGY~t~~~SAR-GLGDpe-ayLt~vHGVRP------VLS~ 135 (180)
.||....-+..|+.||-+|.+--|-+| .| .|++..|.+ ...-.+ -+ .+=|+. .+....+|.-= .|+.
T Consensus 71 ~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~-v~lPvl-~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~ 148 (272)
T 3qja_A 71 IADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIPVL-RKDFVVQPYQIHEARAHGADMLLLIVAALEQ 148 (272)
T ss_dssp --CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHH-CSSCEE-EESCCCSHHHHHHHHHTTCSEEEEEGGGSCH
T ss_pred CCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHh-CCCCEE-ECccccCHHHHHHHHHcCCCEEEEecccCCH
Confidence 479999999999999999999766554 33 688888876 221122 23 233553 55555566543 5688
Q ss_pred HHHHHHHcCCCCCCCeEEEEEeCC
Q 030269 136 SELQFLALLPTLRPKVRVIAECGN 159 (180)
Q Consensus 136 ~ELe~L~~Lp~~ePrvKVVvEmGG 159 (180)
.|+..|...... -.+.+++|+-.
T Consensus 149 ~~l~~l~~~a~~-lGl~~lvev~t 171 (272)
T 3qja_A 149 SVLVSMLDRTES-LGMTALVEVHT 171 (272)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEESS
T ss_pred HHHHHHHHHHHH-CCCcEEEEcCC
Confidence 888888777654 47788888843
No 40
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L}
Probab=21.30 E-value=72 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=18.9
Q ss_pred hHHHhhhcCceEEEeccCCCCCh
Q 030269 97 YLNRLRYLGYYFLDLSARGLGDP 119 (180)
Q Consensus 97 y~RRLRaaGY~t~~~SARGLGDp 119 (180)
+.+.|...||.++.+..||.|+-
T Consensus 45 ~~~~l~~~G~~v~~~d~~G~G~s 67 (286)
T 3qit_A 45 VALPLAAQGYRVVAPDLFGHGRS 67 (286)
T ss_dssp HHHHHHHTTCEEEEECCTTSTTS
T ss_pred HHHHhhhcCeEEEEECCCCCCCC
Confidence 45677888999999999999854
No 41
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=20.97 E-value=1.4e+02 Score=26.13 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=39.9
Q ss_pred ChhhHHHHHHhcceeEEec---CCC-----CCchh-hhHHHhhhc-CceEEEeccCCCCChhhhhhhccCCccccCHHHH
Q 030269 69 DLGRWLSDVEKHKAIAIYT---PHE-----GGYEG-RYLNRLRYL-GYYFLDLSARGLGDPETTLTKVYPVCPVLSKSEL 138 (180)
Q Consensus 69 d~~~FirDLEk~GaLAvy~---PlE-----GG~EG-Ry~RRLRaa-GY~t~~~SARGLGDpeayLt~vHGVRPVLS~~EL 138 (180)
|++++...+|+.+-+.||. |-. |=+-+ ..+++|..+ |-....+ +||+++|++. | ++.+++
T Consensus 88 d~~~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~----IaD~~a~l~~-----~-~~~e~i 157 (406)
T 3tze_A 88 DFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQ----ITDDEKFLWK-----S-MRLEDA 157 (406)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEE----ECHHHHHHHS-----S-CCHHHH
T ss_pred cHHHHHHHHhcCCCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEE----eeChHHHcCC-----C-CCHHHH
Confidence 7788888888888888875 322 22222 356778887 6555543 8999999984 4 555554
No 42
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=20.85 E-value=75 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=29.9
Q ss_pred cceeEEecCCCCCchhhhHHHhhhcCceEEEeccC
Q 030269 80 HKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSAR 114 (180)
Q Consensus 80 ~GaLAvy~PlEGG~EGRy~RRLRaaGY~t~~~SAR 114 (180)
.+.++|..=+||||.-.=...++++|+..+.+--|
T Consensus 190 ~~~v~l~IGPEGGfs~~Ei~~~~~~Gf~~vsLG~r 224 (257)
T 3kw2_A 190 GQDVLILIGPEGDFSPSEVESALLAGFAPVSLGES 224 (257)
T ss_dssp TSCEEEEECCTTCCCHHHHHHHHHHTCEEECCCSS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHCCCEEEcCCCC
Confidence 46789999999999999999999999987766443
No 43
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=20.73 E-value=46 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.9
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCee
Q 030269 138 LQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 138 Le~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
+..|..|-++.|.+||++-+|||-
T Consensus 56 ~~~~~~lk~~~p~lKvllsiGGw~ 79 (445)
T 1wb0_A 56 YQEFNGLKKMNPKLKTLLAIGGWN 79 (445)
T ss_dssp HHHHHHGGGTCTTCEEEEEEECTT
T ss_pred HHHHHHHHHhCCCCeEEEEECCCC
Confidence 566788888999999999999984
No 44
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.55 E-value=81 Score=20.08 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHhhhcCceEEEeccCCCCChhhhhhhccCCcc--ccC------HHHHHHHHcCCCCCCCeEEEEEeC
Q 030269 98 LNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP--VLS------KSELQFLALLPTLRPKVRVIAECG 158 (180)
Q Consensus 98 ~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP--VLS------~~ELe~L~~Lp~~ePrvKVVvEmG 158 (180)
.+-|+..||..... .|.+..+..+..-.| |+. ..-++.+..|-+..|.++||+=.+
T Consensus 24 ~~~L~~~g~~v~~~-----~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 24 DSWFSSLGATTVLA-----ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp HHHHHHTTCEEEEE-----SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHhCCceEEEe-----CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 34456667765432 256666655555556 221 133555666666778888887444
No 45
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=20.40 E-value=26 Score=27.97 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCCCeEEEEEeCCee
Q 030269 138 LQFLALLPTLRPKVRVIAECGNWR 161 (180)
Q Consensus 138 Le~L~~Lp~~ePrvKVVvEmGG~R 161 (180)
.+.+..|-++.|.|||++=+|||-
T Consensus 63 ~~~~~~lK~~~~~lKvllSiGG~~ 86 (275)
T 3sim_A 63 PDQISAIKSSHPNVRVAVSLGGAS 86 (275)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECSE
T ss_pred HHHHHHHHHhCCCCEEEEEEcCCC
Confidence 566677778899999999999985
Done!