BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030270
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GR43|EMC4_XENLA ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4
PE=2 SV=1
Length = 180
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 7 VMGSGRR--WAVDFTDNSTTPST-----RDIADPPGFSRASQDQDDSTLSRQKKDAEANW 59
V GRR WA++F + +D P G+S D+ S Q+ D
Sbjct: 8 VTNRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS----DKQVPDTSVQESDHILVE 63
Query: 60 KSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYK 119
K + W++A P K + M F+M+MAG+T+ +F I + W+PI AL F+ +
Sbjct: 64 K--RCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLE 121
Query: 120 DSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLALGV+K ++GLLPTHASDW++ + P +EY+GGG L
Sbjct: 122 SSGQRFLQ-GLVYLIGNLLGLALGVYKCQSMGLLPTHASDWLAFIEPPERMEYTGGGFLL 180
>sp|Q6PBF7|EMC4_XENTR ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4
PE=2 SV=1
Length = 180
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 7 VMGSGRR--WAVDFTDNSTTPST-----RDIADPPGFSRASQDQDDSTLSRQKKDAEANW 59
V GRR WA++F + +D P G+S D+ S Q+ D
Sbjct: 8 VANRGRRFKWAIEFGSGGSRGRGERGGLQDSMYPVGYS----DKQVPDTSVQESDHILVE 63
Query: 60 KSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYK 119
K + W++A P K + M F+M+MAG+T+ +F I + W+PI AL F+ +
Sbjct: 64 K--RCWDIALGPLKQIPMNLFIMYMAGNTISIFPIMMVCMMAWRPIQALLATPATFKLLE 121
Query: 120 DSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLAL V+K ++GLLPTHASDW++ + P +EY+GGG+ L
Sbjct: 122 SSGQRFLQ-GLVYLIGNLLGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEYTGGGLLL 180
>sp|Q6P011|EMC4_DANRE ER membrane protein complex subunit 4 OS=Danio rerio GN=emc4 PE=2
SV=1
Length = 189
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 13/171 (7%)
Query: 13 RWAVDFT-DNSTTPSTR-----DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWE 66
+WAV+ + NS + S R D+ P G+S D ++A+ N ++ W+
Sbjct: 24 KWAVELSLGNSRSRSDRQGKDGDVMYPVGYS------DKPVPDTSVQEADRNLVEKRCWD 77
Query: 67 VAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLL 126
VA P K + M F+M+M+G+T+ +F I + W+PI AL + F+ + S L
Sbjct: 78 VALGPLKQIPMNLFIMYMSGNTISIFPIMMVCMMAWRPIQALMSMSATFKLLESSSQQWL 137
Query: 127 GPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGI 177
L+++ NL G AL ++K ++GLLPTH+SDW++ + P +E GGG+
Sbjct: 138 -QGLVYLIGNLLGSALAIYKCQSMGLLPTHSSDWLAFIEPPQRLEIMGGGM 187
>sp|Q5RC35|EMC4_PONAB ER membrane protein complex subunit 4 OS=Pongo abelii GN=EMC4 PE=2
SV=1
Length = 183
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLAL V+K ++GLLPTHASDW++ + P +E+SGGG+ L
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183
>sp|Q9CZX9|EMC4_MOUSE ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=2
SV=1
Length = 183
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLAL V+K ++GLLPTHASDW++ + P +E+SGGG+ L
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183
>sp|Q5J8M3|EMC4_HUMAN ER membrane protein complex subunit 4 OS=Homo sapiens GN=EMC4 PE=1
SV=2
Length = 183
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLAL V+K ++GLLPTHASDW++ + P +E+SGGG+ L
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183
>sp|Q3T0K8|EMC4_BOVIN ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2
SV=1
Length = 183
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 61 SQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKD 120
++ W++A P K + M F+M+MAG+T+ +F + W+PI AL + F+ +
Sbjct: 66 EKRCWDIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISATFKMLES 125
Query: 121 SKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
S L L+++ NL GLAL V+K ++GLLPTHASDW++ + P +E+SGGG+ L
Sbjct: 126 SSQKFL-QGLVYLIGNLMGLALAVYKCQSMGLLPTHASDWLAFIEPPERMEFSGGGLLL 183
>sp|B5XB24|EMC4_SALSA ER membrane protein complex subunit 4 OS=Salmo salar GN=emc4 PE=2
SV=1
Length = 188
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Query: 29 DIADPPGFSRASQDQDDSTLSRQKKDAEANWKSQKAWEVAQAPFKNLMMMGFMMWMAGST 88
D+ P G+S D ++ + N ++ W+VA P K + M F+M+M+G+T
Sbjct: 45 DVMYPIGYS------DKPVPDTSIQETDKNLVEKRCWDVALGPLKQIPMNLFIMYMSGNT 98
Query: 89 VHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLLFIALNLGGLALGVWKLN 148
+ +F I + W+PI AL + F+ ++S L L++ NL G AL ++K
Sbjct: 99 ISIFPIMMVCMMAWRPIQALMSMSATFKLLENSNQQWL-QGLVYSVGNLLGSALAIYKCQ 157
Query: 149 TLGLLPTHASDWVSSLPPALEVEYSGGGIPL 179
++GLLPTH+SDW++ + P +E GGG+ L
Sbjct: 158 SMGLLPTHSSDWLAFIEPPQRMEIMGGGMVL 188
>sp|O94520|YQ13_SCHPO ER membrane protein complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1281.03c PE=3 SV=1
Length = 193
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 46 STLSRQKKDAEANWKSQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPI 105
S ++++++ + + +KAWE+A +P K + M + +M+G+++ +FSI T L P+
Sbjct: 57 SIFAKREEELQKDLLLKKAWELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPL 116
Query: 106 SALQGVGKVFEPYKDSKVDLLGPKL-LFIALNLGGLALGVWKLNTLGLLPTHASDWVS 162
A+ G F P+K + L P + +I L + +GV+KL +GLLPT SDW++
Sbjct: 117 KAITSTGSAFTPFKGTHPGTLWPAMGAYILFQLLLMGIGVYKLQRMGLLPTTTSDWLA 174
>sp|P53073|EMC4_YEAST ER membrane protein complex subunit 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC4 PE=1 SV=1
Length = 190
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 16 VDFTDNSTTPSTRDIADPPGF---------SRASQDQDDSTLSRQKKDAEANWKSQKAWE 66
+ + ++ + PPGF +R QD T S +K+ + QKAW+
Sbjct: 16 TKYIEKYNIQNSNTLPSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQ 75
Query: 67 VAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPY---KDSKV 123
+A P K++ M FM +M+G+++ + I L PI A+ F+P K ++
Sbjct: 76 IALQPAKSIPMNIFMSYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQS 135
Query: 124 DLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWV 161
+ ++I + +G KLN++GL+P DW+
Sbjct: 136 QVQTAMFMYIVFQGVLMYIGYRKLNSMGLIPNAKGDWL 173
>sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Psilotum
nudum GN=ndhG PE=3 SV=1
Length = 188
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 83 WMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDSKVDLLGPKLL 131
+ +++ LF + I W I +++ K+FEP S V L+G +LL
Sbjct: 102 LIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLL 150
>sp|Q58DI5|PPAC2_BOVIN Presqualene diphosphate phosphatase OS=Bos taurus GN=PPAPDC2 PE=2
SV=1
Length = 289
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 119 KDSKVDLLGPKLLFIALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPALEVEYSGGGIP 178
++ ++DL P L IAL LA+ +W LG+ +S W S P +E SG GIP
Sbjct: 82 EEDRIDL-NPSFLGIALR-SLLAIDLWLSKKLGVCAGESSSWGSMRPLMKLLEISGHGIP 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,936,666
Number of Sequences: 539616
Number of extensions: 2897922
Number of successful extensions: 6575
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6554
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)