Query 030270
Match_columns 180
No_of_seqs 120 out of 191
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a3n_A Transcription factor SO 20.4 18 0.0006 23.3 -0.4 10 76-85 6-15 (71)
2 3u2b_C Transcription factor SO 18.6 21 0.0007 23.6 -0.4 10 76-85 6-15 (79)
3 4ev6_A Magnesium transport pro 18.0 2.1E+02 0.0074 23.8 5.8 29 87-117 277-305 (339)
4 1i11_A Transcription factor SO 16.9 24 0.00082 23.6 -0.4 10 76-85 8-17 (81)
5 3f27_D Transcription factor SO 16.8 24 0.00082 23.6 -0.4 10 76-85 10-19 (83)
6 2lef_A LEF-1 HMG, protein (lym 16.1 26 0.00088 23.8 -0.4 11 76-86 6-16 (86)
7 3j20_D 30S ribosomal protein S 14.5 52 0.0018 26.4 0.9 15 143-157 73-87 (180)
8 1p58_D Envelope protein M; fla 14.4 1.6E+02 0.0056 20.4 3.4 34 70-104 39-72 (75)
9 2k1a_A Integrin alpha-IIB; sin 14.3 84 0.0029 19.6 1.7 8 140-147 27-34 (42)
10 3zsu_A TLL2057 protein, cyanoq 14.0 50 0.0017 25.4 0.7 57 29-87 8-73 (130)
No 1
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.40 E-value=18 Score=23.33 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.2
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 6 P~~af~lf~~ 15 (71)
T 4a3n_A 6 PMNAFMVWAK 15 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7899999864
No 2
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=18.56 E-value=21 Score=23.62 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=8.2
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 6 P~naf~lf~~ 15 (79)
T 3u2b_C 6 PMNAFMVWSQ 15 (79)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889999874
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=18.04 E-value=2.1e+02 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=22.1
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhccccccc
Q 030270 87 STVHLFSIGITFSALWQPISALQGVGKVFEP 117 (180)
Q Consensus 87 nsi~IFsImmv~m~~~~Pikai~~~~~~F~~ 117 (180)
+.+.++++..++.+.-+=|.+++++| |+.
T Consensus 277 ~~mk~LTiit~IflP~T~IaGiyGMN--f~~ 305 (339)
T 4ev6_A 277 QIMKILTMVTTIFAVPMWITGIYGMN--FSY 305 (339)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHTTCC--CSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCc--CCC
Confidence 34457788888888888889999999 553
No 4
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=16.94 E-value=24 Score=23.58 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.3
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 8 P~naf~lf~~ 17 (81)
T 1i11_A 8 PMNAFMVWAK 17 (81)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889999875
No 5
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=16.82 E-value=24 Score=23.57 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.4
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|+|+||+|+.
T Consensus 10 P~~af~lf~~ 19 (83)
T 3f27_D 10 PMNAFMVWAK 19 (83)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7899999974
No 6
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=16.06 E-value=26 Score=23.75 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.6
Q ss_pred HHHHHHHHHhC
Q 030270 76 MMMGFMMWMAG 86 (180)
Q Consensus 76 pMn~FMmyMsG 86 (180)
|||+||+|+.-
T Consensus 6 P~naf~lf~~~ 16 (86)
T 2lef_A 6 PLNAFMLYMKE 16 (86)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 78899988753
No 7
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=14.50 E-value=52 Score=26.39 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=12.2
Q ss_pred HHHHhhcCCCcCCCC
Q 030270 143 GVWKLNTLGLLPTHA 157 (180)
Q Consensus 143 glyK~~~MGLLPt~~ 157 (180)
-|-||+.|||||+..
T Consensus 73 LL~kL~~~Gll~~~~ 87 (180)
T 3j20_D 73 LLARLKRLGLLPEDA 87 (180)
T ss_dssp HHHHHHHHTSSSSCC
T ss_pred HHHHHHHcCCCCCCC
Confidence 468999999999843
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=14.41 E-value=1.6e+02 Score=20.39 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHhCCccchhHHHHHHHHHHHH
Q 030270 70 APFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQP 104 (180)
Q Consensus 70 ~P~K~ipMn~FMmyMsGnsi~IFsImmv~m~~~~P 104 (180)
.|.+.+-.- ++.||.|++..==-|.+++.++.-|
T Consensus 39 Np~~al~a~-~~~w~lG~~~~Qrvi~~il~llvaP 72 (75)
T 1p58_D 39 HPGFTIMAA-ILAYTIGTTHFQRVLIFILLTAIAP 72 (75)
T ss_pred ChHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhcc
Confidence 566666666 8999999654433344444444443
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=14.27 E-value=84 Score=19.63 Aligned_cols=8 Identities=50% Similarity=1.223 Sum_probs=5.3
Q ss_pred HHHHHHHh
Q 030270 140 LALGVWKL 147 (180)
Q Consensus 140 l~lglyK~ 147 (180)
+.++||||
T Consensus 27 i~~~LwK~ 34 (42)
T 2k1a_A 27 LVLAMWKV 34 (42)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 34677777
No 10
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=14.04 E-value=50 Score=25.41 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCC--C-c--chhhhhhhhhHHHHHHHHHHHH----HhhhhhhhhHHHHHHHHHhCC
Q 030270 29 DIADPPGFSRASQD--Q-D--DSTLSRQKKDAEANWKSQKAWE----VAQAPFKNLMMMGFMMWMAGS 87 (180)
Q Consensus 29 ~lp~PpGy~~~~~~--~-~--~~~~~~~~~~~~~~L~~kkaWe----iA~~P~K~ipMn~FMmyMsGn 87 (180)
..+.||.|++.... + . .-.....+-.+...|..+|-|. +-.+|+.++-.+ |.|.+.|
T Consensus 8 ~~~~pptysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~--m~~l~~~ 73 (130)
T 3zsu_A 8 TTPPPPTYSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMD--MRALNRN 73 (130)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHH--HHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHH--HHHHHHh
Confidence 35679999975111 0 0 0011122335677899999994 557888887777 5665554
Done!