Query 030270
Match_columns 180
No_of_seqs 120 out of 191
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030270.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030270hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 26.1 5.5 0.0004 24.9 -0.4 10 76-85 6-15 (70)
2 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 24.4 6.1 0.00044 25.5 -0.5 10 76-85 6-15 (80)
3 d2lefa_ a.21.1.1 (A:) Lymphoid 21.0 7.8 0.00057 25.1 -0.5 10 76-85 6-15 (86)
4 d1j46a_ a.21.1.1 (A:) SRY {Hum 16.7 11 0.00083 24.2 -0.4 10 76-85 8-17 (85)
5 d2qalr1 a.4.8.1 (R:19-73) Ribo 16.3 31 0.0023 21.0 1.7 18 139-156 35-52 (55)
6 d1qrva_ a.21.1.1 (A:) HMG-D {D 13.8 15 0.0011 22.8 -0.5 10 76-85 7-16 (73)
7 d1ckta_ a.21.1.1 (A:) High mob 11.6 19 0.0014 21.9 -0.5 10 76-85 5-14 (71)
8 d2uubr1 a.4.8.1 (R:19-88) Ribo 11.3 61 0.0044 20.6 2.1 22 136-157 44-65 (70)
9 d2gcxa1 b.34.1.2 (A:1-75) Ferr 10.7 42 0.003 21.3 1.1 33 145-177 24-56 (75)
10 d2iuba2 f.17.3.1 (A:286-349) M 10.6 56 0.004 19.7 1.6 26 88-113 5-30 (64)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.08 E-value=5.5 Score=24.91 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 6 P~nay~lf~~ 15 (70)
T d1i11a_ 6 PMNAFMVWAK 15 (70)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7888988874
No 2
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.40 E-value=6.1 Score=25.53 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=8.2
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 6 P~nAy~lF~~ 15 (80)
T d1gt0d_ 6 PMNAFMVWSR 15 (80)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7889998875
No 3
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.03 E-value=7.8 Score=25.09 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 6 P~naf~lF~~ 15 (86)
T d2lefa_ 6 PLNAFMLYMK 15 (86)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7889998864
No 4
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.68 E-value=11 Score=24.17 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.9
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|||+||+|+.
T Consensus 8 P~nay~lF~~ 17 (85)
T d1j46a_ 8 PMNAFIVWSR 17 (85)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7788888875
No 5
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=16.26 E-value=31 Score=21.00 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHhhcCCCcCCC
Q 030270 139 GLALGVWKLNTLGLLPTH 156 (180)
Q Consensus 139 ~l~lglyK~~~MGLLPt~ 156 (180)
-++-++-+.-.|||||-+
T Consensus 35 ~l~~aIkrAR~~gLlP~~ 52 (55)
T d2qalr1 35 QLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHTTSSCSS
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 567889999999999965
No 6
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=13.77 E-value=15 Score=22.78 Aligned_cols=10 Identities=20% Similarity=0.946 Sum_probs=8.1
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|+|+||+|+.
T Consensus 7 P~say~lf~~ 16 (73)
T d1qrva_ 7 PLSAYMLWLN 16 (73)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7888888875
No 7
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.60 E-value=19 Score=21.95 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=7.8
Q ss_pred HHHHHHHHHh
Q 030270 76 MMMGFMMWMA 85 (180)
Q Consensus 76 pMn~FMmyMs 85 (180)
|+|+||+|+.
T Consensus 5 P~say~~f~~ 14 (71)
T d1ckta_ 5 KMSSYAFFVQ 14 (71)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6788888874
No 8
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=11.27 E-value=61 Score=20.62 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcCCCcCCCC
Q 030270 136 NLGGLALGVWKLNTLGLLPTHA 157 (180)
Q Consensus 136 ql~~l~lglyK~~~MGLLPt~~ 157 (180)
|==-++-++-+.-.|||||-+.
T Consensus 44 ~Qr~l~~aIkrAR~~gLlPy~~ 65 (70)
T d2uubr1 44 EQRILAKTIKRARILGLLPFTE 65 (70)
T ss_dssp HHHHHHHHHHHHHHTTSSCSCC
T ss_pred HHHHHHHHHHHHHHHhcccccH
Confidence 3345788899999999999764
No 9
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=10.72 E-value=42 Score=21.26 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCCCCCcccCCCCccceeecccCc
Q 030270 145 WKLNTLGLLPTHASDWVSSLPPALEVEYSGGGI 177 (180)
Q Consensus 145 yK~~~MGLLPt~~sDWla~~~p~~~~E~s~Gg~ 177 (180)
-|+.+||+.|-+.=.=+..-+--.++++..+|.
T Consensus 24 ~RL~~mGl~pG~~V~v~~~ap~g~P~~i~v~~~ 56 (75)
T d2gcxa1 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRV 56 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEETTE
T ss_pred HHHHHcCCCCCCEEEEEEECCCCCCEEEEECCE
Confidence 478999999988766664433345566666554
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.57 E-value=56 Score=19.67 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccc
Q 030270 88 TVHLFSIGITFSALWQPISALQGVGK 113 (180)
Q Consensus 88 si~IFsImmv~m~~~~Pikai~~~~~ 113 (180)
.+.++++..+..+--+=|.+++++|-
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 34567788888888888899999993
Done!