BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030272
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 206 bits (523), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 1 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLH 60
M KS+VVD+++GKS DS +RTS+GT+ A A T PLEN EGLQVLH
Sbjct: 54 MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLH 113
Query: 61 YEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWW 118
Y GQKYEPH+DYF D N ++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W
Sbjct: 114 YHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW- 172
Query: 119 NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175
SEC K GL++KP GDAL+F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 173 ---SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 206 bits (523), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 1 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLH 60
M KS+VVD+++GKS DS +RTS+GT+ A A T PLEN EGLQVLH
Sbjct: 46 MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLH 105
Query: 61 YEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWW 118
Y GQKYEPH+DYF D N ++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W
Sbjct: 106 YHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW- 164
Query: 119 NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175
SEC K GL++KP GDAL+F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 165 ---SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 206 bits (523), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 1 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLH 60
M KS+VVD+++GKS DS +RTS+GT+ A A T PLEN EGLQVLH
Sbjct: 45 MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLH 104
Query: 61 YEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWW 118
Y GQKYEPH+DYF D N ++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W
Sbjct: 105 YHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW- 163
Query: 119 NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175
SEC K GL++KP GDAL+F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 164 ---SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 199 bits (506), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 121/175 (69%), Gaps = 6/175 (3%)
Query: 3 KSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYE 62
KS+VVD+++GKS DS +RTS+GT+ A A T PLEN EGLQVLHY
Sbjct: 56 KSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYH 115
Query: 63 AGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE 120
GQKYEPH+DYF D N ++GGQR+ T L YL+ VEEGGETV PNA+ ++ W
Sbjct: 116 DGQKYEPHYDYFHDPVNAGPEHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGW--- 172
Query: 121 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175
SEC K GL++KP GDAL F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 173 -SECAKRGLAVKPIKGDALXFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 1 MRKSTVVDSDTGKSKD-SRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVL 59
+ KS + S G S+D + +RTSSG FL + P +GEGL +L
Sbjct: 59 LSKSKLARSKVGSSRDVNDIRTSSGAFL--DDNELTAKIEKRISSIXNVPASHGEGLHIL 116
Query: 60 HYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWN 119
+YE Q+Y+ H+DYF E + R++T++ YL+DVEEGGET FP
Sbjct: 117 NYEVDQQYKAHYDYFA-EHSRSAANNRISTLVXYLNDVEEGGETFFP------------- 162
Query: 120 ELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 179
K LS+ P+ G A+ F D SL+ +LHGG PV KG KW +T+W+R YK
Sbjct: 163 ------KLNLSVHPRKGXAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 115 VPWWNELSECGKTGLSIKPKMGDAL 139
P+WN++S+CG+ ++KP D +
Sbjct: 82 CPFWNDISQCGRRDCAVKPAQSDEV 106
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 115 VPWWNELSECGKTGLSIKPKMGDAL 139
P+WN++S+CG+ ++KP D +
Sbjct: 82 CPFWNDISQCGRRDAAVKPAQSDEV 106
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 53 GEGLQVLH--------YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETV 104
GEG+ + Y EP DY + + KNGG+ T L + V +
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLR 121
Query: 105 FPNAQGNISAVPW 117
F N + V W
Sbjct: 122 FTNIGPDTMRVTW 134
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 44 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 101
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 195 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 248
Query: 102 ETVFPNAQGNISAVPWWNELSE 123
N NISAVP W+++++
Sbjct: 249 FAEHSNQLWNISAVPSWSKVNQ 270
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 44 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 101
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 216 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 269
Query: 102 ETVFPNAQGNISAVPWWNELSE 123
N NISAVP W+++++
Sbjct: 270 FAEHSNQLWNISAVPSWSKVNQ 291
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 44 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 101
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 214 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 267
Query: 102 ETVFPNAQGNISAVPWWNELSE 123
N NISAVP W+++++
Sbjct: 268 FAEHSNQLWNISAVPSWSKVNQ 289
>pdb|1MPX|A Chain A, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|B Chain B, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|C Chain C, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|D Chain D, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
Length = 615
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 61 YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLM--YLSDVEEGGETVFPNAQGNISAVPWW 118
+ G + +FDYF + + + G +A Y + ++ G F A G + +PWW
Sbjct: 188 FNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAG-LEQLPWW 246
Query: 119 NELSE 123
++L+E
Sbjct: 247 HKLTE 251
>pdb|2CXA|A Chain A, Crystal Structure Of LeucylPHENYLALANYL-Trna Protein
Transferase From Escherichia Coli
Length = 256
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 136 GDALLFWSMKPDASLDPSSLH 156
GD +L+WS P A L P SLH
Sbjct: 70 GDPILWWSPDPRAVLWPESLH 90
>pdb|2Z3L|A Chain A, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3L|B Chain B, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3N|A Chain A, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3N|B Chain B, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3K|A Chain A, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3K|B Chain B, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3M|A Chain A, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3M|B Chain B, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3O|A Chain A, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3O|B Chain B, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3P|A Chain A, Complex Structure Of Lf-Transferase And Leucine
pdb|2Z3P|B Chain B, Complex Structure Of Lf-Transferase And Leucine
Length = 233
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 136 GDALLFWSMKPDASLDPSSLH 156
GD +L+WS P A L P SLH
Sbjct: 52 GDPILWWSPDPRAVLWPESLH 72
>pdb|3DKQ|A Chain A, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|B Chain B, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|C Chain C, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
Length = 243
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 31/118 (26%)
Query: 60 HYEAGQKYEPHFDYFMDEFNTKNGGQRM-ATVLMYLSDVE--EGGETVFPNAQGNISAVP 116
Y+ G+ + H D + +T +G R + ++LS+ E +GGE V + G
Sbjct: 105 RYQGGETFGYHIDNAIR--STPDGXIRTDLSATLFLSEPENYQGGELVIQDTYGQ----- 157
Query: 117 WWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 174
SIK G +L+ S SSLH PV+ G + ++ W++
Sbjct: 158 ------------QSIKLSAGSLVLYPS---------SSLHQVTPVLSGERTAAFXWLQ 194
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 93 YLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG-------LSIKPKMGDALLFWSMK 145
Y V EG E V P G++ P WN S C G LS ++GD + ++
Sbjct: 58 YDRSVLEGSEQVIPINAGDLFVHPLWN--SNCVACGNDIALVKLSRSAQLGDKVQLANLP 115
Query: 146 PDASLDPS 153
P + P+
Sbjct: 116 PAGDILPN 123
>pdb|2DPS|A Chain A, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPS|B Chain B, Structure Of LeucylPHENYLALANYL-Trna-Protein Transferase
pdb|2DPT|A Chain A, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
pdb|2DPT|B Chain B, LeucylPHENYLALANYL-Trna-Protein Transferase Complexed With
Puromycin
Length = 254
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 136 GDALLFWSMKPDASLDPSSLH 156
GD +L+WS P A L P SLH
Sbjct: 73 GDPILWWSPDPRAVLWPESLH 93
>pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei
pdb|4AY7|B Chain B, Methyltransferase From Methanosarcina Mazei
Length = 348
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 110 GNISAVPWWNELSECGKTGLSIKPKMGDA 138
GN++ P +++++CG GLS++ K+G A
Sbjct: 249 GNVN--PILSDMADCGFEGLSVEEKIGSA 275
>pdb|1LNU|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|F Chain F, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|H Chain H, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 217
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 68 EPHFDY-FMDEFNTKNGGQRMATVLMYLSDVEE 99
E HF Y FM E NG QR+ V Y+ + EE
Sbjct: 30 ERHFVYQFMGECYFTNGTQRIRYVTRYIYNREE 62
>pdb|3RDT|D Chain D, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 217
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 68 EPHFDY-FMDEFNTKNGGQRMATVLMYLSDVEE 99
E HF Y FM E NG QR+ V Y+ + EE
Sbjct: 30 ERHFVYQFMGECYFTNGTQRIRYVTRYIYNREE 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,773,510
Number of Sequences: 62578
Number of extensions: 233253
Number of successful extensions: 372
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)