Query 030272
Match_columns 180
No_of_seqs 173 out of 1226
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 8.5E-53 1.8E-57 352.4 17.7 178 1-179 79-256 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 5.3E-45 1.1E-49 302.2 13.7 162 1-179 122-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.7E-33 3.8E-38 218.9 15.4 147 3-174 28-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.9 7E-24 1.5E-28 170.8 12.0 130 16-175 37-178 (226)
5 PHA02869 C4L/C10L-like gene fa 99.8 1.7E-18 3.6E-23 147.3 10.9 134 2-171 46-187 (418)
6 PHA02813 hypothetical protein; 99.8 2.4E-18 5.2E-23 144.5 10.8 135 2-170 37-177 (354)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.7 5.3E-18 1.1E-22 119.8 5.8 91 56-174 1-100 (100)
8 COG3128 PiuC Uncharacterized i 99.3 2.9E-12 6.2E-17 99.5 7.5 98 52-175 80-181 (229)
9 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.7 1.6E-08 3.4E-13 67.3 4.5 52 53-108 10-65 (70)
10 KOG3710 EGL-Nine (EGLN) protei 98.7 1.5E-07 3.2E-12 75.5 10.6 129 16-175 96-239 (280)
11 PF03336 Pox_C4_C10: Poxvirus 98.7 1.4E-07 3.1E-12 79.6 9.6 125 15-170 36-164 (339)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.7 1.6E-08 3.5E-13 70.8 3.1 90 54-174 2-97 (98)
13 COG3751 EGL-9 Predicted prolin 98.6 2.8E-07 6.1E-12 75.4 9.9 100 55-177 137-242 (252)
14 PF09859 Oxygenase-NA: Oxygena 98.3 1E-05 2.2E-10 62.0 9.8 102 55-175 63-172 (173)
15 PHA02866 Hypothetical protein; 98.2 4.4E-06 9.5E-11 69.4 6.2 128 3-170 34-164 (333)
16 PF13759 2OG-FeII_Oxy_5: Putat 98.0 1.4E-05 2.9E-10 56.6 6.1 92 58-169 4-98 (101)
17 TIGR02466 conserved hypothetic 97.8 0.0002 4.3E-09 57.1 8.7 95 55-169 97-194 (201)
18 TIGR02408 ectoine_ThpD ectoine 97.4 0.0019 4.2E-08 53.7 9.9 126 37-171 94-245 (277)
19 PF12851 Tet_JBP: Oxygenase do 97.3 0.0012 2.7E-08 51.2 7.4 79 66-174 86-170 (171)
20 KOG3844 Predicted component of 97.1 0.0025 5.4E-08 55.2 8.3 110 41-177 104-219 (476)
21 PF05721 PhyH: Phytanoyl-CoA d 96.7 0.0035 7.7E-08 48.1 5.2 116 37-164 70-206 (211)
22 COG3826 Uncharacterized protei 96.2 0.022 4.8E-07 44.8 6.9 103 55-176 125-235 (236)
23 PHA02923 hypothetical protein; 96.2 0.04 8.7E-07 46.2 8.9 98 32-171 43-142 (315)
24 TIGR01762 chlorin-enz chlorina 95.8 0.21 4.6E-06 41.9 11.6 129 36-173 74-247 (288)
25 PRK15401 alpha-ketoglutarate-d 91.6 3.2 6.9E-05 33.4 10.2 102 33-164 95-196 (213)
26 PLN03001 oxidoreductase, 2OG-F 90.9 1.2 2.6E-05 36.8 7.4 87 55-175 117-213 (262)
27 PLN02984 oxidoreductase, 2OG-F 90.3 4.5 9.8E-05 34.7 10.7 87 55-175 201-298 (341)
28 PF13532 2OG-FeII_Oxy_2: 2OG-F 87.8 0.98 2.1E-05 34.8 4.5 102 33-164 75-177 (194)
29 PLN02485 oxidoreductase 87.4 3.5 7.5E-05 35.0 7.9 48 127-175 236-287 (329)
30 PF06822 DUF1235: Protein of u 86.8 5.6 0.00012 33.1 8.4 107 32-177 32-139 (266)
31 PLN02365 2-oxoglutarate-depend 86.0 5.8 0.00013 33.3 8.5 47 127-174 198-248 (300)
32 PLN02904 oxidoreductase 84.5 14 0.0003 31.9 10.3 87 55-175 209-305 (357)
33 PLN02639 oxidoreductase, 2OG-F 84.1 16 0.00034 31.2 10.4 88 55-175 191-288 (337)
34 PLN02515 naringenin,2-oxogluta 83.8 8.6 0.00019 33.2 8.7 45 128-175 244-294 (358)
35 PLN02750 oxidoreductase, 2OG-F 83.7 14 0.0003 31.7 9.9 47 127-176 241-293 (345)
36 PF14033 DUF4246: Protein of u 83.6 5.8 0.00013 36.0 7.8 96 68-179 364-482 (501)
37 PLN02947 oxidoreductase 83.5 14 0.0003 32.2 9.9 85 55-175 226-322 (374)
38 PLN02758 oxidoreductase, 2OG-F 83.0 13 0.00029 32.0 9.6 48 127-175 259-310 (361)
39 PLN02254 gibberellin 3-beta-di 81.9 15 0.00032 31.7 9.5 88 55-175 211-308 (358)
40 PLN02997 flavonol synthase 81.8 8.7 0.00019 32.7 7.9 88 55-176 184-281 (325)
41 PLN02912 oxidoreductase, 2OG-F 80.7 19 0.00042 30.9 9.7 88 55-176 198-295 (348)
42 PLN02276 gibberellin 20-oxidas 80.4 22 0.00048 30.7 10.0 88 54-175 206-303 (361)
43 COG5285 Protein involved in bi 80.3 8.4 0.00018 32.5 7.0 86 66-171 132-226 (299)
44 PLN02299 1-aminocyclopropane-1 79.9 10 0.00023 32.2 7.7 48 127-175 205-256 (321)
45 PF02668 TauD: Taurine catabol 79.5 1.9 4E-05 34.4 2.9 38 127-172 219-258 (258)
46 TIGR00568 alkb DNA alkylation 79.1 4 8.8E-05 31.6 4.5 86 33-142 74-159 (169)
47 PLN00417 oxidoreductase, 2OG-F 78.8 22 0.00047 30.6 9.4 48 127-175 250-301 (348)
48 PLN02216 protein SRG1 78.3 20 0.00044 30.9 9.1 88 55-175 211-308 (357)
49 PTZ00273 oxidase reductase; Pr 77.2 23 0.0005 29.9 9.0 48 127-176 225-276 (320)
50 PLN02393 leucoanthocyanidin di 76.5 16 0.00035 31.6 8.0 49 127-176 260-312 (362)
51 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 74.2 4.5 9.7E-05 31.9 3.7 99 32-163 70-179 (195)
52 cd00250 CAS_like Clavaminic ac 74.2 4.8 0.0001 32.7 4.0 41 127-175 218-261 (262)
53 PLN02704 flavonol synthase 73.8 13 0.00028 31.8 6.6 49 127-176 245-297 (335)
54 PLN02156 gibberellin 2-beta-di 73.3 47 0.001 28.4 10.0 48 127-175 227-278 (335)
55 PLN03178 leucoanthocyanidin di 73.1 17 0.00036 31.4 7.2 47 127-176 257-309 (360)
56 PHA02985 hypothetical protein; 72.8 35 0.00076 28.4 8.5 105 32-176 39-143 (271)
57 KOG0143 Iron/ascorbate family 71.0 43 0.00094 28.5 9.2 86 55-174 177-274 (322)
58 COG3145 AlkB Alkylated DNA rep 70.6 22 0.00048 28.2 6.8 100 19-142 71-170 (194)
59 PLN02403 aminocyclopropanecarb 70.3 29 0.00063 29.2 7.9 48 127-176 200-253 (303)
60 KOG4176 Uncharacterized conser 69.1 69 0.0015 27.5 9.9 115 33-178 190-307 (323)
61 PLN03002 oxidoreductase, 2OG-F 67.1 37 0.00081 28.9 8.0 91 55-175 183-284 (332)
62 COG4340 Uncharacterized protei 66.3 4.8 0.0001 31.9 2.2 52 90-163 148-201 (226)
63 KOG4459 Membrane-associated pr 63.0 1.2 2.6E-05 39.6 -1.9 73 84-177 364-436 (471)
64 COG3491 PcbC Isopenicillin N s 58.4 59 0.0013 27.8 7.4 90 52-174 172-271 (322)
65 cd03528 Rieske_RO_ferredoxin R 51.1 29 0.00063 23.4 3.9 48 91-164 4-51 (98)
66 PRK09965 3-phenylpropionate di 50.1 33 0.00071 23.9 4.1 49 89-164 4-52 (106)
67 TIGR02410 carnitine_TMLD trime 49.9 16 0.00035 31.4 3.0 43 127-178 311-353 (362)
68 KOG1971 Lysyl hydroxylase [Pos 46.7 20 0.00043 31.7 2.9 76 84-176 280-357 (415)
69 TIGR02409 carnitine_bodg gamma 43.8 25 0.00054 30.3 3.2 43 128-178 313-357 (366)
70 PRK09553 tauD taurine dioxygen 40.6 21 0.00046 29.4 2.2 34 68-107 95-128 (277)
71 cd03474 Rieske_T4moC Toluene-4 39.1 52 0.0011 22.8 3.7 27 129-164 26-52 (108)
72 PF04194 PDCD2_C: Programmed c 37.0 45 0.00098 25.4 3.4 27 31-66 56-82 (164)
73 PF07350 DUF1479: Protein of u 33.8 20 0.00044 31.8 1.1 41 128-177 318-359 (416)
74 cd03530 Rieske_NirD_small_Baci 32.9 71 0.0015 21.6 3.6 23 133-164 30-52 (98)
75 PF13621 Cupin_8: Cupin-like d 32.0 79 0.0017 24.7 4.2 42 127-177 207-249 (251)
76 cd04337 Rieske_RO_Alpha_Cao Ca 29.5 75 0.0016 23.1 3.4 56 84-164 14-69 (129)
77 TIGR02409 carnitine_bodg gamma 28.0 2.3E+02 0.005 24.3 6.6 36 66-107 186-221 (366)
78 cd03542 Rieske_RO_Alpha_HBDO R 27.8 67 0.0015 23.2 2.8 39 129-176 27-68 (123)
79 cd04338 Rieske_RO_Alpha_Tic55 27.6 87 0.0019 22.9 3.4 56 84-165 14-70 (134)
80 PF00355 Rieske: Rieske [2Fe-2 27.2 73 0.0016 21.3 2.8 29 128-165 26-54 (97)
81 PHA02577 2 DNA end protector p 26.7 11 0.00024 29.3 -1.6 65 35-109 21-85 (181)
82 cd03478 Rieske_AIFL_N AIFL (ap 26.6 1.2E+02 0.0026 20.3 3.8 13 152-164 38-50 (95)
83 PRK09553 tauD taurine dioxygen 26.5 82 0.0018 25.9 3.5 39 127-173 232-271 (277)
84 cd03467 Rieske Rieske domain; 26.5 1.4E+02 0.003 20.0 4.2 28 151-178 39-68 (98)
85 PRK02963 carbon starvation ind 25.7 84 0.0018 26.9 3.4 34 128-169 266-302 (316)
86 cd03535 Rieske_RO_Alpha_NDO Ri 25.2 66 0.0014 23.1 2.4 25 131-164 31-55 (123)
87 KOG3200 Uncharacterized conser 24.6 1.5E+02 0.0033 23.4 4.3 42 32-74 67-108 (224)
88 PLN00139 hypothetical protein; 24.2 93 0.002 26.5 3.4 36 66-107 112-147 (320)
89 cd00250 CAS_like Clavaminic ac 23.4 1E+02 0.0023 24.8 3.5 37 65-107 94-130 (262)
90 PF10637 Ofd1_CTDD: Oxoglutara 23.2 63 0.0014 26.9 2.1 121 37-173 121-252 (266)
91 PF08489 DUF1743: Domain of un 21.9 41 0.00089 24.2 0.7 25 141-165 57-81 (118)
92 cd03472 Rieske_RO_Alpha_BPDO_l 21.9 85 0.0018 22.8 2.4 55 86-164 7-61 (128)
93 smart00276 GLECT Galectin. Gal 21.0 1.9E+02 0.0041 20.7 4.1 50 129-180 43-92 (128)
94 COG5553 Predicted metal-depend 20.3 4.1E+02 0.0088 20.7 5.8 59 99-164 101-161 (191)
95 cd03480 Rieske_RO_Alpha_PaO Ri 20.2 1.8E+02 0.004 21.2 4.0 69 84-178 14-87 (138)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=8.5e-53 Score=352.44 Aligned_cols=178 Identities=56% Similarity=0.976 Sum_probs=160.9
Q ss_pred CcceEEEeCCCCCccccCcEeeeeeeecCCCCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCcccccccc
Q 030272 1 MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT 80 (180)
Q Consensus 1 ~~~s~v~~~~~~~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~ 80 (180)
|++|+|+++.+++...+++|||+++||+..+++++++|++||++++++|.++.|+|||+||++||+|++|+|++.+....
T Consensus 79 l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~ 158 (310)
T PLN00052 79 IQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQ 158 (310)
T ss_pred cccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCcccccccc
Confidence 57899998877777888999999999998789999999999999999999999999999999999999999998754334
Q ss_pred CCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCC
Q 030272 81 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCP 160 (180)
Q Consensus 81 ~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~p 160 (180)
..+++|++|+|+||||+++||||+||.+... ...+..+.+++|.+.+++|+|++|+||||+|+++||.+|++++|+|||
T Consensus 159 ~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~-~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcP 237 (310)
T PLN00052 159 ALGGHRYATVLMYLSTVDKGGETVFPNAEGW-ENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCP 237 (310)
T ss_pred ccCCceeEEEEEEeccCCCCCceecCCcccc-cccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCe
Confidence 5679999999999999999999999987431 123345678999999999999999999999999999999999999999
Q ss_pred CCcCeEEEEEEeeeecccc
Q 030272 161 VIKGNKWSSTKWIRVNEYK 179 (180)
Q Consensus 161 V~~G~K~~~~~W~~~~~~~ 179 (180)
|++|+||++|+|||.++|.
T Consensus 238 Vi~G~Kw~atkWi~~~~~~ 256 (310)
T PLN00052 238 VIEGEKWSAPKWIHIRSYE 256 (310)
T ss_pred eecCeEEEEEEeeeccccc
Confidence 9999999999999999873
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-45 Score=302.23 Aligned_cols=162 Identities=59% Similarity=1.012 Sum_probs=145.6
Q ss_pred CcceEEE-eCCCCCccccCcEeeeeeeecCCCCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCcccc--c
Q 030272 1 MRKSTVV-DSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMD--E 77 (180)
Q Consensus 1 ~~~s~v~-~~~~~~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~--~ 77 (180)
|++|+|+ +..++....+..|+|+++|+..+.++++++|++||.++++++.++.|+|||++|++||+|.+|+|++.+ +
T Consensus 122 l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~ 201 (289)
T KOG1591|consen 122 LERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEED 201 (289)
T ss_pred hhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccc
Confidence 5789995 545566666678999999999888999999999999999999999999999999999999999999953 2
Q ss_pred --cccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCc
Q 030272 78 --FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSL 155 (180)
Q Consensus 78 --~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~ 155 (180)
.....+++|++|+|+||+|+++||+|+||.+.. .++|+|++|+|++|+|+++||..|++|.
T Consensus 202 ~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~-----------------~~~V~PkkGdal~wfnl~~~~~~d~~S~ 264 (289)
T KOG1591|consen 202 ETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM-----------------KPAVKPKKGDALFWFNLHPDGEGDPRSL 264 (289)
T ss_pred hhhhhcccCCcceeEEEEecccCCCCcccCCCCCC-----------------cccccCCCCCeeEEEEccCCCCCCcccc
Confidence 234568999999999999999999999998731 2499999999999999999999999999
Q ss_pred ccCCCCCcCeEEEEEEeeeecccc
Q 030272 156 HGGCPVIKGNKWSSTKWIRVNEYK 179 (180)
Q Consensus 156 H~g~pV~~G~K~~~~~W~~~~~~~ 179 (180)
|++|||+.|+||++|+|||++.++
T Consensus 265 H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 265 HGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ccCCCeeeccceeeeeeeeecccc
Confidence 999999999999999999998764
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=1.7e-33 Score=218.90 Aligned_cols=147 Identities=45% Similarity=0.731 Sum_probs=125.1
Q ss_pred ceEEEeCCCCCccccCcEeeeeeeecCCC-CHHHHHHHHHHHHhcCCC---CCCCCccEEEEcCCCCccCCCCCcccccc
Q 030272 3 KSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LENGEGLQVLHYEAGQKYEPHFDYFMDEF 78 (180)
Q Consensus 3 ~s~v~~~~~~~~~~~~~Rts~~~~l~~~~-~~~~~~l~~Ri~~~~~~~---~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~ 78 (180)
+|.+.++..+....+++|+|..+|++..+ +++++.|.+||.++++++ ....|.+|+++|++|++|.+|+|......
T Consensus 28 ~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~ 107 (178)
T smart00702 28 RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDE 107 (178)
T ss_pred cceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCC
Confidence 56666544333356789999999998764 799999999999999998 78899999999999999999999976531
Q ss_pred ccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccC
Q 030272 79 NTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGG 158 (180)
Q Consensus 79 ~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g 158 (180)
.++|.+|+++||||+++||+|.||.... .....|+|++|++|+|++. ++.++|++
T Consensus 108 ----~~~r~~T~~~yLn~~~~GG~~~f~~~~~---------------~~~~~v~P~~G~~v~f~~~------~~~~~H~v 162 (178)
T smart00702 108 ----NGDRIATFLLYLNDVEEGGELVFPGLGL---------------MVCATVKPKKGDLLFFPSG------RGRSLHGV 162 (178)
T ss_pred ----CCCeEEEEEEEeccCCcCceEEecCCCC---------------ccceEEeCCCCcEEEEeCC------CCCccccC
Confidence 2689999999999999999999998631 1246999999999999983 23799999
Q ss_pred CCCCcCeEEEEEEeee
Q 030272 159 CPVIKGNKWSSTKWIR 174 (180)
Q Consensus 159 ~pV~~G~K~~~~~W~~ 174 (180)
|||++|+||+|++|+|
T Consensus 163 ~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 163 CPVTRGSRWAITGWIR 178 (178)
T ss_pred CcceeCCEEEEEEEEC
Confidence 9999999999999996
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.91 E-value=7e-24 Score=170.82 Aligned_cols=130 Identities=25% Similarity=0.357 Sum_probs=99.0
Q ss_pred ccCcEeeeeeeecCCCCHHHHHHHHHHHHhc---------CCCCCCCCccEEEEcCCCCccCCCCCccccccc-cCCCCc
Q 030272 16 DSRVRTSSGTFLARGRDKIIRDIEKRIADFT---------FFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN-TKNGGQ 85 (180)
Q Consensus 16 ~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~---------~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~-~~~~~~ 85 (180)
.+++|...+.-. ++++.+.|.+||...+ .+|... .++++.||.+|++|++|+|....... .....+
T Consensus 37 ~~~vKnN~ql~~---d~~~a~~l~~~i~~~L~~~~l~~sa~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~r 112 (226)
T PRK05467 37 AAQVKNNQQLPE---DSPLARELGNLILDALTRNPLFFSAALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVR 112 (226)
T ss_pred chhcccccccCC---CCHHHHHHHHHHHHHHhcCchhhhhcccccc-ccceEEEECCCCccCccccCCcccCCCCCccee
Confidence 345676666542 3567777777776543 233333 46899999999999999999764311 111235
Q ss_pred eeEEEEEeecCCC--CCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc
Q 030272 86 RMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 163 (180)
Q Consensus 86 R~~T~l~YLnd~~--~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~ 163 (180)
|.+|+++||||++ +||||+|+... ....|+|++|++|+|++ .++|+|+||++
T Consensus 113 s~lS~~lyLnd~~~yeGGEl~~~~~~-----------------g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~ 166 (226)
T PRK05467 113 TDLSATLFLSDPDDYDGGELVIEDTY-----------------GEHRVKLPAGDLVLYPS---------TSLHRVTPVTR 166 (226)
T ss_pred EEEEEEEEeCCCCCCcCCceEEecCC-----------------CcEEEecCCCeEEEECC---------CCceeeeeccC
Confidence 6899999999875 89999998642 24789999999999997 79999999999
Q ss_pred CeEEEEEEeeee
Q 030272 164 GNKWSSTKWIRV 175 (180)
Q Consensus 164 G~K~~~~~W~~~ 175 (180)
|+||+++.|++.
T Consensus 167 G~R~~~~~Wi~S 178 (226)
T PRK05467 167 GVRVASFFWIQS 178 (226)
T ss_pred ccEEEEEecHHH
Confidence 999999999974
No 5
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=147.31 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=105.1
Q ss_pred cceEEEeCCCCC-ccccCcEeeeeeeecCCCCHHHHHHHHHHHHhc-----CC--CCCCCCccEEEEcCCCCccCCCCCc
Q 030272 2 RKSTVVDSDTGK-SKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT-----FF--PLENGEGLQVLHYEAGQKYEPHFDY 73 (180)
Q Consensus 2 ~~s~v~~~~~~~-~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~-----~~--~~~~~E~lqv~~Y~~G~~y~~H~D~ 73 (180)
.+|+|.+...|. ......|+|.+..+.. ++.+.|.+||+.+. +. .+.-.|.++++||.+||+|++|.|+
T Consensus 46 ~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~Dg 122 (418)
T PHA02869 46 EDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDF 122 (418)
T ss_pred ccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccccccC
Confidence 467888766663 4455679999999873 45666666666542 32 3456789999999999999999997
Q ss_pred cccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCC
Q 030272 74 FMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPS 153 (180)
Q Consensus 74 ~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~ 153 (180)
.... ......+|+|+|||++++||+|.|..- ....|.|+.| |+|.. .
T Consensus 123 ~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~~------------------~~~sI~pksg--LLFdh---------~ 169 (418)
T PHA02869 123 STVF----SKNIICVHLLLYLEQPETGGETVIYID------------------NNTSVKLKTD--HLFDK---------T 169 (418)
T ss_pred ceec----CCCEEEEEEEEEEeccCCCCceEEEeC------------------CCceEecCCC--eEecc---------c
Confidence 6532 245668899999999999999999862 2467999999 88965 8
Q ss_pred CcccCCCCCcCeEEEEEE
Q 030272 154 SLHGGCPVIKGNKWSSTK 171 (180)
Q Consensus 154 ~~H~g~pV~~G~K~~~~~ 171 (180)
..|+|++|.+|.|++|..
T Consensus 170 l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 170 IEHESITVESGRKCVALF 187 (418)
T ss_pred cccCCcEeecCeEEEEEE
Confidence 999999999999999854
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=144.51 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=101.9
Q ss_pred cceEEEeCCCC-CccccCcEeeeeeeecCCCCHHHHHHHHHHHH-hcCCC----CCCCCccEEEEcCCCCccCCCCCccc
Q 030272 2 RKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD-FTFFP----LENGEGLQVLHYEAGQKYEPHFDYFM 75 (180)
Q Consensus 2 ~~s~v~~~~~~-~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~-~~~~~----~~~~E~lqv~~Y~~G~~y~~H~D~~~ 75 (180)
..|++.+...| +......|++.++.++.. +.+.++|++-|.+ +.+.+ +.-.|.+.++||.+|++|++|.|+..
T Consensus 37 ~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H~Dg~~ 115 (354)
T PHA02813 37 EESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNHRDFIH 115 (354)
T ss_pred cccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcccCCce
Confidence 35778774444 556778999999999853 3444555554443 22333 35678999999999999999999755
Q ss_pred cccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCc
Q 030272 76 DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSL 155 (180)
Q Consensus 76 ~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~ 155 (180)
.. . .....+|+|+|||++++||+|.|...+. . +|. .|++|+|.. ...
T Consensus 116 ~r---~-k~~s~~tLLLYLN~~~~GGeT~f~~~~~-----------------t-sI~--~g~dlLFdh---------~l~ 162 (354)
T PHA02813 116 FK---S-KNCYCYHLVLYLNNTSKGGNTNIHIKDN-----------------T-IFS--TKNDVLFDK---------TLN 162 (354)
T ss_pred ee---c-CCceEEEEEEEEeccCCCCceEEEcCCC-----------------c-eEe--ecceEEEec---------ccc
Confidence 32 1 1238999999999999999999986421 2 455 999999975 899
Q ss_pred ccCCCCCcCeEEEEE
Q 030272 156 HGGCPVIKGNKWSST 170 (180)
Q Consensus 156 H~g~pV~~G~K~~~~ 170 (180)
|+|+||.+|.|++|-
T Consensus 163 Heg~~V~sG~KyVa~ 177 (354)
T PHA02813 163 HSSDIITDGEKNIAL 177 (354)
T ss_pred cCCcEeccCeEEEEE
Confidence 999999999999874
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.73 E-value=5.3e-18 Score=119.83 Aligned_cols=91 Identities=36% Similarity=0.592 Sum_probs=70.1
Q ss_pred cEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCC---CCcceecCCCCCCCCCCccccccccccCcCeeE-
Q 030272 56 LQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE---EGGETVFPNAQGNISAVPWWNELSECGKTGLSI- 131 (180)
Q Consensus 56 lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~---~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v- 131 (180)
+|+.+|.+|++|.+|+|... ...+.+|+|+|||+++ +||+|.|.... ... .....+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~------------~~~~~~~ 60 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSD------------DVSREVE 60 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--TS------------STCEEEG
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cCC------------CcceEEE
Confidence 48999999999999999743 3689999999999887 89999998642 000 012233
Q ss_pred ----ecceeeEEEEeecCCCCCCCCCCcccCCCC-CcCeEEEEEEeee
Q 030272 132 ----KPKMGDALLFWSMKPDASLDPSSLHGGCPV-IKGNKWSSTKWIR 174 (180)
Q Consensus 132 ----~P~~G~al~f~n~~~~g~~d~~~~H~g~pV-~~G~K~~~~~W~~ 174 (180)
.|+.|++|+|++ ..++|++.|| ..|.|++++.|++
T Consensus 61 ~~~~~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 61 DFDIVPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp GGSEE-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred eccccCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 399999999997 5899999999 8999999999986
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.35 E-value=2.9e-12 Score=99.48 Aligned_cols=98 Identities=27% Similarity=0.379 Sum_probs=79.2
Q ss_pred CCCccEEEEcCCCCccCCCCCccccccccC--CCCceeEEEEEeecCCC--CCcceecCCCCCCCCCCccccccccccCc
Q 030272 52 NGEGLQVLHYEAGQKYEPHFDYFMDEFNTK--NGGQRMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNELSECGKT 127 (180)
Q Consensus 52 ~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~--~~~~R~~T~l~YLnd~~--~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~ 127 (180)
..++.++.+|+.|.+|.+|.|......... ..-...+++-+||+|++ +|||.+..... .
T Consensus 80 t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-----------------g 142 (229)
T COG3128 80 TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-----------------G 142 (229)
T ss_pred ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc-----------------c
Confidence 567899999999999999999876541111 12233567889999986 79999997643 2
Q ss_pred CeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 128 GLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
...|+-.+|++|+|++ .++|.+.||+.|+++..-.|+..
T Consensus 143 ~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qs 181 (229)
T COG3128 143 NHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQS 181 (229)
T ss_pred ceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHH
Confidence 5778888899999998 89999999999999999999864
No 9
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.73 E-value=1.6e-08 Score=67.32 Aligned_cols=52 Identities=27% Similarity=0.464 Sum_probs=43.2
Q ss_pred CCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeec----CCCCCcceecCCC
Q 030272 53 GEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLS----DVEEGGETVFPNA 108 (180)
Q Consensus 53 ~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLn----d~~~GGeT~Fp~~ 108 (180)
.+.+++.+|..|++|++|.|..... .+.+|.+|+||||| +...||++.|+.-
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 4568999999999999999987643 15789999999999 4567999999764
No 10
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.72 E-value=1.5e-07 Score=75.54 Aligned_cols=129 Identities=23% Similarity=0.334 Sum_probs=86.1
Q ss_pred ccCcEeeeeeeecCCCC--HHHH-------HHHHHHHHhcCCCCCCCCccEEEEcCC-CCccCCCCCccccccccCCCCc
Q 030272 16 DSRVRTSSGTFLARGRD--KIIR-------DIEKRIADFTFFPLENGEGLQVLHYEA-GQKYEPHFDYFMDEFNTKNGGQ 85 (180)
Q Consensus 16 ~~~~Rts~~~~l~~~~~--~~~~-------~l~~Ri~~~~~~~~~~~E~lqv~~Y~~-G~~y~~H~D~~~~~~~~~~~~~ 85 (180)
.+++|....+|+.-.+. +.+. .+........+-..-.-..--|+.|.- |-.|-.|.|.-. +.-
T Consensus 96 ~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDG 168 (280)
T KOG3710|consen 96 SKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHCNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDG 168 (280)
T ss_pred chhhccCCceEecCCCCCccceeeecccchhhhhhhccccccccccceeEEEEEecCCCceeeEeccCCC-------CCc
Confidence 34799999999985321 1111 111111111110011123457888974 678999999743 457
Q ss_pred eeEEEEEeecC---CC-CC-cceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCC
Q 030272 86 RMATVLMYLSD---VE-EG-GETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCP 160 (180)
Q Consensus 86 R~~T~l~YLnd---~~-~G-GeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~p 160 (180)
|-+|++.|||. +. .| +--.||..... -..|.|+-++.|||++ |.+-.|++.|
T Consensus 169 RcITcIYYlNqNWD~kv~Gg~Lri~pe~~~~----------------~adieP~fdrLlffwS-------drrnPhev~P 225 (280)
T KOG3710|consen 169 RCITCIYYLNQNWDVKVHGGILRIFPEGSTT----------------FADIEPKFDRLLFFWS-------DRRNPHEVQP 225 (280)
T ss_pred eEEEEEEEcccCcceeeccceeEeccCCCCc----------------ccccCcCCCeEEEEEe-------cCCCcccccc
Confidence 99999999994 33 34 44467765321 3579999999999999 6778899999
Q ss_pred CCcCeEEEEEEeeee
Q 030272 161 VIKGNKWSSTKWIRV 175 (180)
Q Consensus 161 V~~G~K~~~~~W~~~ 175 (180)
+.. +||.|+.|.-.
T Consensus 226 a~~-tryaitvwyfd 239 (280)
T KOG3710|consen 226 AYA-TRYAITVWYFD 239 (280)
T ss_pred ccc-cceEEEEEEec
Confidence 997 79999999754
No 11
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.68 E-value=1.4e-07 Score=79.55 Aligned_cols=125 Identities=21% Similarity=0.270 Sum_probs=90.7
Q ss_pred cccCcEeeeeeeecC-CCCHHHHHHHHHHHHhcCC---CCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEE
Q 030272 15 KDSRVRTSSGTFLAR-GRDKIIRDIEKRIADFTFF---PLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATV 90 (180)
Q Consensus 15 ~~~~~Rts~~~~l~~-~~~~~~~~l~~Ri~~~~~~---~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 90 (180)
.+...|.|.+..+.. ..+++.++|++.|..-+.- ...-.+.+.+++|..|++|+.|.|.... ......-.++
T Consensus 36 ~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~L 111 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHL 111 (339)
T ss_pred ccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEE
Confidence 344588998877763 3467888888877653321 1234567999999999999999994322 3356788999
Q ss_pred EEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEE
Q 030272 91 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSST 170 (180)
Q Consensus 91 l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~ 170 (180)
++||+.+.+||+|.|..-... ..+ + ...+-++|. ....|...+|.+|.|.+|.
T Consensus 112 vLyL~~~~~GGktkiyi~~~~---------------~tv-I--~~~~DvLFd---------Ksl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 112 VLYLNNPENGGKTKIYIDPND---------------NTV-I--STSEDVLFD---------KSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEEeccCCCceEEEEECCCC---------------cee-e--eccccEEEe---------ccccccceEeccCeEEEEE
Confidence 999999999999998632110 012 3 336677774 5899999999999999963
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.66 E-value=1.6e-08 Score=70.82 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=56.4
Q ss_pred CccEEEEcC---CCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCee
Q 030272 54 EGLQVLHYE---AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLS 130 (180)
Q Consensus 54 E~lqv~~Y~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~ 130 (180)
+.+++.+|. .+..+.+|.|.. .+.+|++++ .++|++.|.... ..+.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-----------------~~~~ 50 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-----------------EWVD 50 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-----------------EEEE
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-----------------cccC
Confidence 468999999 889999999963 578999999 778899998642 2466
Q ss_pred EecceeeEEEEe-ecC--CCCCCCCCCcccCCCCCcCeEEEEEEeee
Q 030272 131 IKPKMGDALLFW-SMK--PDASLDPSSLHGGCPVIKGNKWSSTKWIR 174 (180)
Q Consensus 131 v~P~~G~al~f~-n~~--~~g~~d~~~~H~g~pV~~G~K~~~~~W~~ 174 (180)
|.|..+..++.. ++. -.+.....++|+++|+.+|.|++++.|++
T Consensus 51 v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 51 VPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp ----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred ccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 777666555543 311 12334568999999999999999999986
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.8e-07 Score=75.35 Aligned_cols=100 Identities=30% Similarity=0.355 Sum_probs=77.1
Q ss_pred ccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecC---CCCCcce-ecCCCCCCCCCCccccccccccCcCee
Q 030272 55 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSD---VEEGGET-VFPNAQGNISAVPWWNELSECGKTGLS 130 (180)
Q Consensus 55 ~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd---~~~GGeT-~Fp~~~~~~~~~~~~~~~~~c~~~~~~ 130 (180)
+.|+..|.+|.+|..|-|.+.+ ...|.+|.++|+|. ++.||+. .|+.+..+... ...-..
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~----------~~~~~t 200 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTA----------ADSFKT 200 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccccccc----------cccccc
Confidence 4899999999999999998764 46899999999997 5789999 88876421100 012457
Q ss_pred EecceeeEEEEeecCCCCCCCC-CCcccCCCCC-cCeEEEEEEeeeecc
Q 030272 131 IKPKMGDALLFWSMKPDASLDP-SSLHGGCPVI-KGNKWSSTKWIRVNE 177 (180)
Q Consensus 131 v~P~~G~al~f~n~~~~g~~d~-~~~H~g~pV~-~G~K~~~~~W~~~~~ 177 (180)
+.|.-++.++|.+ +. .+.|.+.+|. .+.|..++.|+|.+.
T Consensus 201 i~P~fn~lv~F~s-------~~~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 201 IAPVFNSLVFFKS-------RPSHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred cCCCCceEEEEEe-------cCCccceeccccccccceEEEeeEEecCC
Confidence 9999999999987 12 3788887754 458999999998653
No 14
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=1e-05 Score=62.01 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=75.6
Q ss_pred ccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCC---CCCcceecCCCCCCCCCCccccccccccCcCeeE
Q 030272 55 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV---EEGGETVFPNAQGNISAVPWWNELSECGKTGLSI 131 (180)
Q Consensus 55 ~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~---~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v 131 (180)
...+++|++|++-..|.|..-+. -=-+-+++-||++ ++|||.++-.-..+. ++....+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~-------vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~------------QSR~~V~ 123 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEH-------VFPLQVVILLSEPGEDFTGGEFVLTEQRPRM------------QSRAMVL 123 (173)
T ss_pred chhhheeCCCCccccccCCCCCc-------ccCeEEEEEcCCCCCcccCceEEEEEecCCc------------cCccccC
Confidence 36789999999999999976432 1124678889985 589999985433221 1236789
Q ss_pred ecceeeEEEEee-cCC----CCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 132 KPKMGDALLFWS-MKP----DASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 132 ~P~~G~al~f~n-~~~----~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
.+++|+|+||.. ..| .|.--....|++.+|.+|+++.+-+=||.
T Consensus 124 ~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 124 PLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 999999999974 223 23444568999999999999999887774
No 15
>PHA02866 Hypothetical protein; Provisional
Probab=98.17 E-value=4.4e-06 Score=69.43 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=85.6
Q ss_pred ceEEEeCCCC-CccccCcEeeeeeeecCCCCHHHHHHHHHHHHhcC--CCCCCCCccEEEEcCCCCccCCCCCccccccc
Q 030272 3 KSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF--FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN 79 (180)
Q Consensus 3 ~s~v~~~~~~-~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~--~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~ 79 (180)
+|.|.+...+ .......|.|.++ +++..+++ |+.++.. ...--.+.+.+++|..|.+|.-|.|....+
T Consensus 34 ~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~-- 104 (333)
T PHA02866 34 DSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED-- 104 (333)
T ss_pred hhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec--
Confidence 4555543333 2233445666554 56777777 5555432 222235678999999999999999875432
Q ss_pred cCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCC
Q 030272 80 TKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGC 159 (180)
Q Consensus 80 ~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~ 159 (180)
...++-.++++||+.+..||+|.++.-.. .+--.+ +=++| |....|...
T Consensus 105 --~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~-------------------t~i~~~-~DvLF---------DKsl~h~S~ 153 (333)
T PHA02866 105 --RHRGREYTLVLHLSSPKNGGKTDVCVGDK-------------------TVISTA-DDFLL---------EKRSEQLSN 153 (333)
T ss_pred --cCCceEEEEEEEEeccccCCceEEEeCCC-------------------ceEeec-cceee---------eccccccce
Confidence 34678899999999999999999984321 111111 23445 468999999
Q ss_pred CCCcCeEEEEE
Q 030272 160 PVIKGNKWSST 170 (180)
Q Consensus 160 pV~~G~K~~~~ 170 (180)
-|.+|.|.++-
T Consensus 154 ~V~~G~K~Val 164 (333)
T PHA02866 154 VVQEGEKIVVA 164 (333)
T ss_pred eeecCcEEEEE
Confidence 99999998764
No 16
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=98.04 E-value=1.4e-05 Score=56.62 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=47.3
Q ss_pred EEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCC-CCcc-ccccccccCcCeeEecce
Q 030272 58 VLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNIS-AVPW-WNELSECGKTGLSIKPKM 135 (180)
Q Consensus 58 v~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~-~~~~-~~~~~~c~~~~~~v~P~~ 135 (180)
+..|+.|++-.+|.= .+-.+|.++||+-++..|.+.|..-..... ..+. .............++|+.
T Consensus 4 ~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---T
T ss_pred EEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCC
Confidence 345778888777732 344799999999988889999954322110 0010 011111112367899999
Q ss_pred eeEEEEeecCCCCCCCCCCcccCCCCCcC-eEEEE
Q 030272 136 GDALLFWSMKPDASLDPSSLHGGCPVIKG-NKWSS 169 (180)
Q Consensus 136 G~al~f~n~~~~g~~d~~~~H~g~pV~~G-~K~~~ 169 (180)
|++|||++ .+.|++.|-... +|+++
T Consensus 73 G~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 73 GDLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TEEEEEET---------TSEEEE----SSS-EEEE
T ss_pred CEEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 99999997 899999999875 67665
No 17
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.75 E-value=0.0002 Score=57.11 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=62.0
Q ss_pred ccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecC--CCCCCCCCCccccccccccCcCeeEe
Q 030272 55 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFP--NAQGNISAVPWWNELSECGKTGLSIK 132 (180)
Q Consensus 55 ~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp--~~~~~~~~~~~~~~~~~c~~~~~~v~ 132 (180)
..=+.++.+|++-..|.= .+-.+|-++||+-+..+|.+.|- ....-....+............+.|+
T Consensus 97 ~~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVP 165 (201)
T ss_pred eEeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEEC
Confidence 344567889998777742 34479999999998888888883 32210000000000000111346799
Q ss_pred cceeeEEEEeecCCCCCCCCCCcccCCCCCc-CeEEEE
Q 030272 133 PKMGDALLFWSMKPDASLDPSSLHGGCPVIK-GNKWSS 169 (180)
Q Consensus 133 P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~-G~K~~~ 169 (180)
|+.|++|+|++ ...|++.|... ++|+++
T Consensus 166 P~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 166 PQEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 99999999998 89999999885 467765
No 18
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.36 E-value=0.0019 Score=53.66 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEcC-CCCccCCCCCccccccccCCCCceeEEEEEeecCCCC-Ccceec-CCCCCCC-
Q 030272 37 DIEKRIADFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEE-GGETVF-PNAQGNI- 112 (180)
Q Consensus 37 ~l~~Ri~~~~~~~~~~~E~lqv~~Y~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~-GGeT~F-p~~~~~~- 112 (180)
.|...+++++|-+.......-+.+.+ .|+.+.||.|...-.........+.+|+.|+|.|+.+ .|.+.| |......
T Consensus 94 ~l~~~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~ 173 (277)
T TIGR02408 94 RVANAARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFI 173 (277)
T ss_pred HHHHHHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcc
Confidence 34555666776543222111123333 2457889999642110001113468999999999864 376766 6544310
Q ss_pred ---CCCc--ccc--------ccccc-------cC-cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC-eEEEEE
Q 030272 113 ---SAVP--WWN--------ELSEC-------GK-TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG-NKWSST 170 (180)
Q Consensus 113 ---~~~~--~~~--------~~~~c-------~~-~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G-~K~~~~ 170 (180)
...+ .++ ...+. .. .-+.+.-++|++|||.. .++|++-|.... .|+++-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l~ 244 (277)
T TIGR02408 174 SCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNVF 244 (277)
T ss_pred cCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeEE
Confidence 0000 000 00000 00 11346669999999975 899999998876 466554
Q ss_pred E
Q 030272 171 K 171 (180)
Q Consensus 171 ~ 171 (180)
.
T Consensus 245 l 245 (277)
T TIGR02408 245 M 245 (277)
T ss_pred E
Confidence 3
No 19
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.28 E-value=0.0012 Score=51.21 Aligned_cols=79 Identities=27% Similarity=0.320 Sum_probs=60.2
Q ss_pred ccCCCCCccccccccCCCCceeEEEEEeecCC-CCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeec
Q 030272 66 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV-EEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 144 (180)
Q Consensus 66 ~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~-~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~ 144 (180)
....|.|... .+--+++++-|... +.||..++|.++.+. .|++|.|..|++|+|-.
T Consensus 86 ~t~~HrD~~~--------~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~--------------~g~~~~~~~GtVl~~~~- 142 (171)
T PF12851_consen 86 CTHSHRDTHN--------MPNGYDVLCTLGRGDYDGGRLELPGLDPNI--------------LGVAFAYQPGTVLIFCA- 142 (171)
T ss_pred CccceecCCC--------CCCCeEEEEecCCccccCceEecccccccc--------------CCEEEecCCCcEEEEcc-
Confidence 3456777542 23347777777543 889999999833211 38999999999999976
Q ss_pred CCCCCCCCCCcccCCCCCc-----CeEEEEEEeee
Q 030272 145 KPDASLDPSSLHGGCPVIK-----GNKWSSTKWIR 174 (180)
Q Consensus 145 ~~~g~~d~~~~H~g~pV~~-----G~K~~~~~W~~ 174 (180)
....|+..||.. |+|+.+.-+.|
T Consensus 143 -------~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 -------KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred -------cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 468999999997 99999988876
No 20
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.13 E-value=0.0025 Score=55.25 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=78.0
Q ss_pred HHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCC----CCcceec-CCCCCCCCCC
Q 030272 41 RIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE----EGGETVF-PNAQGNISAV 115 (180)
Q Consensus 41 Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~----~GGeT~F-p~~~~~~~~~ 115 (180)
-+..++|--...--++.+..|..|.+--.|-|- -+.|.+++++||-|.. .||++.. |........
T Consensus 104 ~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~---------ietRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~P~- 173 (476)
T KOG3844|consen 104 EIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDV---------IETRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQPK- 173 (476)
T ss_pred HHHhccCccccceeeeceeeeeccceecccccc---------ccceEEEEEEEecCcccccccCceeEecccccccCcc-
Confidence 344455432222336889999999999999775 3678999999999865 3777765 432211100
Q ss_pred ccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCe-EEEEEEeeeecc
Q 030272 116 PWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN-KWSSTKWIRVNE 177 (180)
Q Consensus 116 ~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~-K~~~~~W~~~~~ 177 (180)
..-.++.|+-.+.+||.- -+.+.|.+.-|..-+ |..++.|+|.+.
T Consensus 174 ----------s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~ 219 (476)
T KOG3844|consen 174 ----------SVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQ 219 (476)
T ss_pred ----------chhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCc
Confidence 012468999999999975 378999999999765 599999999764
No 21
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=96.69 E-value=0.0035 Score=48.13 Aligned_cols=116 Identities=19% Similarity=0.097 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCCCC----CCCccE-EEEcC-CCCcc-CCCCCccccccccCCCCceeEEEEEeecCCC-CCcceec-CC
Q 030272 37 DIEKRIADFTFFPLE----NGEGLQ-VLHYE-AGQKY-EPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PN 107 (180)
Q Consensus 37 ~l~~Ri~~~~~~~~~----~~E~lq-v~~Y~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~-~GGeT~F-p~ 107 (180)
.|...++++.|.... ....++ +.+-. +|... .||.|...-.. ....+.+|+.|+|.|+. +.|.+.+ |.
T Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pG 146 (211)
T PF05721_consen 70 RILDLVRALLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPG 146 (211)
T ss_dssp HHHHHHHHHHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETT
T ss_pred HHHHHHHHhhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecC
Confidence 566666677665421 111121 23322 46665 89999765321 11688999999999984 4555666 65
Q ss_pred CCCCCCCCccccc-----c-------ccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 108 AQGNISAVPWWNE-----L-------SECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 108 ~~~~~~~~~~~~~-----~-------~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
..........+.. . .......+.+..++|++|||.. .++|++.|....
T Consensus 147 SH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~---------~~~H~s~~N~s~ 206 (211)
T PF05721_consen 147 SHKWGVEPHEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHS---------RLIHGSGPNTSD 206 (211)
T ss_dssp GCCSCCEEECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEET---------TSEEEEE-B-SS
T ss_pred CcCCCcccccccccccccccccccccccccCceEEeecCCCeEEEEcC---------CccccCCCCCCc
Confidence 4322100000000 0 0011235789999999999975 999999997654
No 22
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.022 Score=44.75 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=72.8
Q ss_pred ccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCC---CCcceecCCCCCCCCCCccccccccccCcCeeE
Q 030272 55 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE---EGGETVFPNAQGNISAVPWWNELSECGKTGLSI 131 (180)
Q Consensus 55 ~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~---~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v 131 (180)
..-+++|++|.+-..|.|-.-+- -=-+-+.|-|+|+. .|||.+.-....+. ++.+-.|
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~------------QSr~~vv 185 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRM------------QSRPTVV 185 (236)
T ss_pred CceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEeccccc------------ccCCcee
Confidence 45789999999999999976431 11245677889874 79998875432221 0135678
Q ss_pred ecceeeEEEEeecC-C-C---CCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 132 KPKMGDALLFWSMK-P-D---ASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 132 ~P~~G~al~f~n~~-~-~---g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
+-++|.+++|--.+ | . |.--....|++.-+.+|+++.+-+=||..
T Consensus 186 pLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHDA 235 (236)
T COG3826 186 PLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHDA 235 (236)
T ss_pred eccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeecC
Confidence 88999999996432 1 2 33344578999999999999998877753
No 23
>PHA02923 hypothetical protein; Provisional
Probab=96.20 E-value=0.04 Score=46.18 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCC--CCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCC
Q 030272 32 DKIIRDIEKRIADFTFFP--LENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQ 109 (180)
Q Consensus 32 ~~~~~~l~~Ri~~~~~~~--~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~ 109 (180)
+.+...|++.|-+-+... ..-...+.++.|++|.+ -+. ...+.-+.+++||+.+..||+|.|+.-+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l----------~~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL----------TDDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee----------ecCceEEEEEEEEeccCCCCeEEEecCC
Confidence 568888888776543322 11233589999999995 111 1134778899999999999999998643
Q ss_pred CCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEE
Q 030272 110 GNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTK 171 (180)
Q Consensus 110 ~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~ 171 (180)
. .++ .+ +=++| |....|...-|.+|.|.+|-.
T Consensus 111 t-----------------~i~---~~-~DvLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 T-----------------VIT---SS-EDIMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred C-----------------eEe---ec-cceee---------ecccccceeeeecCcEEEEEE
Confidence 1 111 11 22445 468999999999999998765
No 24
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=95.79 E-value=0.21 Score=41.87 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccc--------cCCCCceeEEEEEeecCCC-CCcceec-
Q 030272 36 RDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN--------TKNGGQRMATVLMYLSDVE-EGGETVF- 105 (180)
Q Consensus 36 ~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~--------~~~~~~R~~T~l~YLnd~~-~GGeT~F- 105 (180)
.+|...+++++|-+....-..-+.+...++...||.|...-... ......+.+|+.+.|.|+. +-|.+.|
T Consensus 74 ~~l~~~~~~llG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~vi 153 (288)
T TIGR01762 74 PEICHRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFI 153 (288)
T ss_pred HHHHHHHHHHhCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEE
Confidence 34555666777755433222345555555558899995432100 0112358899999999985 4455555
Q ss_pred CCCCCCCC---CCcc-----------------------cccc------ccccCcCeeEecceeeEEEEeecCCCCCCCCC
Q 030272 106 PNAQGNIS---AVPW-----------------------WNEL------SECGKTGLSIKPKMGDALLFWSMKPDASLDPS 153 (180)
Q Consensus 106 p~~~~~~~---~~~~-----------------------~~~~------~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~ 153 (180)
|....... .... +..+ ..+...-+.+.=++|+++||.. .
T Consensus 154 PGSH~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~~---------~ 224 (288)
T TIGR01762 154 PGTHNSMNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------T 224 (288)
T ss_pred CCCCCCCCCCcccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEECC---------C
Confidence 54432100 0000 0000 0011123567778999999964 8
Q ss_pred CcccCCCCCcC--eEEEE-EEee
Q 030272 154 SLHGGCPVIKG--NKWSS-TKWI 173 (180)
Q Consensus 154 ~~H~g~pV~~G--~K~~~-~~W~ 173 (180)
++|++.|.++. .++++ ..|+
T Consensus 225 t~HgS~~N~S~~~~R~~~~~ry~ 247 (288)
T TIGR01762 225 LMHASYPNSGESQMRMGFASRYV 247 (288)
T ss_pred ceecCCCCCCCCceEEEEEEEEc
Confidence 99999999885 35654 3355
No 25
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=91.64 E-value=3.2 Score=33.43 Aligned_cols=102 Identities=20% Similarity=0.171 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCC
Q 030272 33 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI 112 (180)
Q Consensus 33 ~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~ 112 (180)
+.+..|.++++..++.+....+..-|..|.+|+.-.+|.|....+ ...-++++-+ |..-.|-.-..+.
T Consensus 95 ~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~~~ 162 (213)
T PRK15401 95 ASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGLKR 162 (213)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecccCC
Confidence 368889999988887654455667888899999999999963211 1233444443 4455554311000
Q ss_pred CCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 113 SAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 113 ~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
.....+|.-.-|++|+|-. .. ...+|+.-|+..|
T Consensus 163 ------------~~~~~~l~L~~Gdllvm~G-----~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 163 ------------SDPLQRILLEHGDVVVWGG-----PS-RLRYHGILPLKAG 196 (213)
T ss_pred ------------CCceEEEEeCCCCEEEECc-----hH-hheeccCCcCCCC
Confidence 0124688999999999943 22 3467999888765
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.86 E-value=1.2 Score=36.79 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=52.9
Q ss_pred ccEEEEcCCC------CccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAG------QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+- --..+|.|+. .+|+|+. +++ || +.... + +..
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~v--~G-LqV~~-~----------------g~W 163 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DDV--EG-LQLLK-D----------------AEW 163 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CCC--Cc-eEEee-C----------------CeE
Confidence 4788899763 1245777752 4677655 343 44 33321 1 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|..||--- ...||. =..++|.+.-....+|+++.-+++-
T Consensus 164 i~V~p~p~a~vVNiGD~l~~~tng~-~~S~~HRVv~~~~~~R~Sia~F~~p 213 (262)
T PLN03001 164 LMVPPISDAILIIIADQTEIITNGN-YKSAQHRAIANANKARLSVATFHDP 213 (262)
T ss_pred EECCCCCCcEEEEccHHHHHHhCCc-cccccceEEcCCCCCEEEEEEEEcC
Confidence 899999998877310 112232 2368999985555679999888764
No 27
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.33 E-value=4.5 Score=34.75 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=53.3
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+.. ...+|.|+. .+|+|+- ++ .|| +.... + ...
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q-d~--v~G-LQV~~-~----------------g~W 247 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ-DE--VGG-LEVMK-D----------------GEW 247 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe-CC--CCC-eeEee-C----------------Cce
Confidence 58999998742 244777753 4677765 33 344 33321 1 147
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccC-CCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGG-CPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g-~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|.+||--- .-.||. =..++|.+ .+-...+||++.-+++-
T Consensus 248 v~V~p~pgalVVNiGD~Le~wTNg~-~kSt~HRVv~~~~~~~R~Sia~F~~P 298 (341)
T PLN02984 248 FNVKPIANTLVVNLGDMMQVISDDE-YKSVLHRVGKRNKKKERYSICYFVFP 298 (341)
T ss_pred EECCCCCCeEEEECChhhhhhcCCe-eeCCCCccccCCCCCCeEEEEEEecC
Confidence 999999999988421 111222 23689999 34334579998877754
No 28
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=87.79 E-value=0.98 Score=34.84 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCC
Q 030272 33 KIIRDIEKRIADFTF-FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN 111 (180)
Q Consensus 33 ~~~~~l~~Ri~~~~~-~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~ 111 (180)
+.+..+.+++....+ .+........|..|.+|+.-.+|.|.... ..+..++|+-+ |+...|-.-...
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~ 142 (194)
T PF13532_consen 75 EWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS 142 (194)
T ss_dssp HHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc
Confidence 345666666665444 22233445677889999999999997521 23566777665 434444321100
Q ss_pred CCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 112 ISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 112 ~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
. .+.-+.|.-..|+++++.. ...... |+..|+..+
T Consensus 143 ~------------~~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 D------------DDEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp G------------TS-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred C------------CCccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 0 0124788888999999963 222234 999998874
No 29
>PLN02485 oxidoreductase
Probab=87.40 E-value=3.5 Score=35.04 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=32.3
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
..+.|+|..|.+||--- ...+|. =..++|.+.+....+|+++.-+++-
T Consensus 236 ~Wi~V~p~pg~~vVNiGD~L~~~TnG~-~~St~HRVv~~~~~~R~Si~~F~~p 287 (329)
T PLN02485 236 EWIWAIPIPGTFVCNIGDMLKIWSNGV-YQSTLHRVINNSPKYRVCVAFFYET 287 (329)
T ss_pred cEEECCCCCCcEEEEhHHHHHHHHCCE-eeCCCceecCCCCCCeEEEEEEecC
Confidence 36899999998887410 112232 2368999986655579999888764
No 30
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=86.84 E-value=5.6 Score=33.07 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccC-CCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCC
Q 030272 32 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYE-PHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQG 110 (180)
Q Consensus 32 ~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~-~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~ 110 (180)
..++..|++.+.+ +.--.+.+++..|+.|+-++ .+.+ .....++++=|..+..||...+-....
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~~ 96 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTIS 96 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeeccc
Confidence 3566666666633 33445679999999998764 3322 345778999999999999888865422
Q ss_pred CCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeecc
Q 030272 111 NISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNE 177 (180)
Q Consensus 111 ~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~~ 177 (180)
+ .--.+.|..|.||+-- |.+..-+.+|.+|.-.++..=+..+.
T Consensus 97 ~---------------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l~idIPS 139 (266)
T PF06822_consen 97 N---------------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVLDIDIPS 139 (266)
T ss_pred C---------------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEEEeccCc
Confidence 1 2468999999999975 57888899999998877766554443
No 31
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=85.97 E-value=5.8 Score=33.29 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=31.6
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 174 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~ 174 (180)
..+.|+|..|..||--- ...||. =..++|.+...-..+|+++.-++.
T Consensus 198 ~Wi~V~p~pga~vVNiGD~l~~~TNG~-~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 198 EFVPVDPLPGTLLVNLGDVATAWSNGR-LCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred eEEecCCCCCeEEEEhhHHHHHHhCCc-eecccceeEcCCCCCEEEEEEEec
Confidence 37899999999888310 011232 236899987554557999888764
No 32
>PLN02904 oxidoreductase
Probab=84.45 E-value=14 Score=31.90 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=53.0
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+.. --.+|.|+. .+|+|+- |+ || +..-.-+ +..
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~q--d~--~G-LQV~~~~----------------g~W 255 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILLQ--SS--QG-LQIMDCN----------------KNW 255 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEec--CC--Ce-eeEEeCC----------------CCE
Confidence 47888998731 244777752 4788753 53 44 4432111 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|..||--- ...||. =..++|.+-.....+|+++.-++.-
T Consensus 256 i~V~p~pgalVVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 256 VCVPYIEGALIVQLGDQVEVMSNGI-YKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred EECCCCCCeEEEEccHHHHHHhCCe-eeccCCcccCCCCCCEEEEEEeecC
Confidence 899999999887321 011222 2468999964445689999888654
No 33
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.12 E-value=16 Score=31.20 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=52.3
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+-. -..+|.|+. .+|+|+- |...||==+++ + ...
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v~GLQV~~--~----------------g~W 238 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILLQ--DQQVAGLQVLK--D----------------GKW 238 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEEe--cCCcCceEeec--C----------------CeE
Confidence 57888898732 145677752 4677643 43334422322 1 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|.+||--- .-.||. =..++|.+-..-..+||++.-+++-
T Consensus 239 i~V~p~pg~lVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p 288 (337)
T PLN02639 239 VAVNPHPGAFVINIGDQLQALSNGR-YKSVWHRAVVNTDKERMSVASFLCP 288 (337)
T ss_pred EeccCCCCeEEEechhHHHHHhCCe-eeccCcccccCCCCCEEEEEEEecC
Confidence 899999999888311 011222 2368999854334679999888764
No 34
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=83.78 E-value=8.6 Score=33.24 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=31.6
Q ss_pred CeeEecceeeEEEEeecC------CCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 128 GLSIKPKMGDALLFWSMK------PDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n~~------~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
.+.|+|..|..|| |+. .||.. ..++|.+-....++|+++.-+++-
T Consensus 244 Wi~Vpp~pgalVV--NiGD~L~~~TNG~~-kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 244 WITVQPVEGAFVV--NLGDHGHYLSNGRF-KNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred EEECCCCCCeEEE--EccHHHHHHhCCee-eeecceEECCCCCCEEEEEEEecC
Confidence 7899999998887 332 23322 468999865545689999887764
No 35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.69 E-value=14 Score=31.70 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=32.4
Q ss_pred cCeeEecceeeEEEEeecC------CCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWSMK------PDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~------~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|..|| |+. .||. =..++|.+......+||++.-+++-.
T Consensus 241 ~Wi~V~p~pg~~vV--NiGD~L~~~Tng~-~~St~HRVv~~~~~~R~Si~~F~~P~ 293 (345)
T PLN02750 241 EWIPVKPIPDAFII--NIGNCMQVWTNDL-YWSAEHRVVVNSQKERFSIPFFFFPS 293 (345)
T ss_pred eEEEccCCCCeEEE--EhHHHHHHHhCCe-eecccceeccCCCCCEEEEEEeecCC
Confidence 37899999998887 321 1222 23689999755456799998877643
No 36
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=83.57 E-value=5.8 Score=35.98 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCCCCccccccccCCCCceeEEEEEeecC-CCCCcceecCCCCC-CC---------CCCccccc---c---ccccCcCee
Q 030272 68 EPHFDYFMDEFNTKNGGQRMATVLMYLSD-VEEGGETVFPNAQG-NI---------SAVPWWNE---L---SECGKTGLS 130 (180)
Q Consensus 68 ~~H~D~~~~~~~~~~~~~R~~T~l~YLnd-~~~GGeT~Fp~~~~-~~---------~~~~~~~~---~---~~c~~~~~~ 130 (180)
.||.++.. +..-.+|.|+|+.. .-....+.|-.... .. .+...... . ..|-+.-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 58888754 35788999999963 23445677743321 11 00001110 1 112222226
Q ss_pred EecceeeEEEEeecCCCCCCCCCCcccCCC------CCcCeEEEEEEeeeecccc
Q 030272 131 IKPKMGDALLFWSMKPDASLDPSSLHGGCP------VIKGNKWSSTKWIRVNEYK 179 (180)
Q Consensus 131 v~P~~G~al~f~n~~~~g~~d~~~~H~g~p------V~~G~K~~~~~W~~~~~~~ 179 (180)
|.-+.|++|+|+| ...|.+.| -..|.+-+++.|+-...++
T Consensus 437 v~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLvDP~~~ 482 (501)
T PF14033_consen 437 VETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLVDPHIR 482 (501)
T ss_pred EEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEecCCCCc
Confidence 8889999999999 56777775 3569999999998776654
No 37
>PLN02947 oxidoreductase
Probab=83.52 E-value=14 Score=32.16 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=52.6
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+.. ...+|.|+. .+|+|+. ++ .||==++. + +..
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~--~----------------g~W 272 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEGLQIMH--A----------------GRW 272 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCCeeEeE--C----------------CEE
Confidence 46777888742 245677752 5787766 33 34433332 1 147
Q ss_pred eeEecceeeEEEEeecCC------CCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWSMKP------DASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n~~~------~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|.+||- +.+ ||.. ..++|.+-.....+|+++.-++.-
T Consensus 273 i~V~p~pga~VVN--vGD~Lq~~SNG~~-kS~~HRVv~~~~~~R~Sia~F~~P 322 (374)
T PLN02947 273 VTVEPIPGSFVVN--VGDHLEIFSNGRY-KSVLHRVRVNSTKPRISVASLHSL 322 (374)
T ss_pred EeCCCCCCeEEEE--eCceeeeeeCCEE-eccccccccCCCCCEEEEEEEecC
Confidence 8999999988773 321 2322 368999964445679999887764
No 38
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.01 E-value=13 Score=32.05 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=31.9
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
..+.|+|..|..||--- ...||. =..++|.+......+|+++.-+++-
T Consensus 259 ~Wi~V~p~pgalVVNiGD~L~~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~P 310 (361)
T PLN02758 259 TWVPVHPVPNALVINIGDTLEVLTNGK-YKSVEHRAVTNKEKDRLSIVTFYAP 310 (361)
T ss_pred EEEeCCCCCCeEEEEccchhhhhcCCe-eecccceeecCCCCCEEEEEEEecC
Confidence 37899999999887421 112232 2368999975544579998877653
No 39
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=81.91 E-value=15 Score=31.75 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=53.0
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+.. .-.+|.|.. .+|+|+. ++ .||==++..- +..
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q-d~--v~GLQV~~~~-----------------~~W 258 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ-SN--TSGLQVFREG-----------------VGW 258 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec-CC--CCCceEECCC-----------------CEE
Confidence 46788898731 255777752 4777765 33 3553333221 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|.+||--- ...||. =..++|.+-.-...+|+++.-+++-
T Consensus 259 i~V~p~pgalVVNiGD~lq~~SNg~-~kS~~HRVv~~~~~~R~Sia~F~~P 308 (358)
T PLN02254 259 VTVPPVPGSLVVNVGDLLHILSNGR-FPSVLHRAVVNKTRHRISVAYFYGP 308 (358)
T ss_pred EEcccCCCCEEEEhHHHHHHHhCCe-eccccceeecCCCCCEEEEEEEecC
Confidence 899999999988421 112232 2468999854434579988877653
No 40
>PLN02997 flavonol synthase
Probab=81.81 E-value=8.7 Score=32.71 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=53.0
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+-. -..+|.|+. .+|+|+. ++ .||==+... +..
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~------------------g~W 230 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP-NE--VPGLQAFKD------------------EQW 230 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec-CC--CCCEEEeEC------------------CcE
Confidence 47888898732 255777752 4677743 22 355333321 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
+.|+|..|.+||--- .-.||. =..++|.+..-...+|+.+.-+++-.
T Consensus 231 i~V~p~pgalvVNiGD~Le~~TNG~-~kSt~HRVv~~~~~~R~Si~fF~~P~ 281 (325)
T PLN02997 231 LDLNYINSAVVVIIGDQLMRMTNGR-FKNVLHRAKTDKERLRISWPVFVAPR 281 (325)
T ss_pred EECCCCCCeEEEEechHHHHHhCCc-cccccceeeCCCCCCEEEEEEEecCC
Confidence 899999998877421 012232 23689999754455799888777643
No 41
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=80.71 E-value=19 Score=30.88 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=53.0
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+-. .-.+|.|+. .+|+|+- | ..||==++.. +..
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~------------------g~W 244 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKD------------------GKW 244 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEEC------------------CcE
Confidence 57888998731 245777752 4677754 3 2345333321 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
+.|+|..|..||--- ...||. =..++|.+-....++|+++.-+++-.
T Consensus 245 i~V~p~pgalvVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 245 IAVNPIPNTFIVNLGDQMQVISNDK-YKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred EECCCcCCeEEEEcCHHHHHHhCCE-EEcccccccCCCCCCEEEEEEEecCC
Confidence 899999999887410 011232 23689998544456799998887643
No 42
>PLN02276 gibberellin 20-oxidase
Probab=80.38 E-value=22 Score=30.65 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=53.5
Q ss_pred CccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCc
Q 030272 54 EGLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 127 (180)
Q Consensus 54 E~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~ 127 (180)
..+++.+|.+.. --.+|.|+. .+|+|+- | ..||==++. + ..
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~--~----------------g~ 252 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFV--D----------------NK 252 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEE--C----------------CE
Confidence 357888897642 244677752 4677754 3 344533332 1 13
Q ss_pred CeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 128 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
.+.|+|..|.+||--- .-.+|. =..++|.+......+|+++.-+++-
T Consensus 253 Wi~V~p~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 253 WRSVRPRPGALVVNIGDTFMALSNGR-YKSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred EEEcCCCCCeEEEEcHHHHHHHhCCc-cccccceeecCCCCCEEEEEEEecC
Confidence 7999999999988521 011232 2468999754445689999888764
No 43
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.33 E-value=8.4 Score=32.55 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=56.3
Q ss_pred ccCCCCCccccccccCCCCceeEEEEEeecCCC-CCcceec-CCCCCCCCCCcccc---ccccc----cCcCeeEeccee
Q 030272 66 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNISAVPWWN---ELSEC----GKTGLSIKPKMG 136 (180)
Q Consensus 66 ~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~-~GGeT~F-p~~~~~~~~~~~~~---~~~~c----~~~~~~v~P~~G 136 (180)
.=.+|.|+... ..+..-++.+.+=|-|.. +-|.|.+ |.... |. ++.+- ....+.|.-.||
T Consensus 132 ~t~~HqD~~~~----~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~-------~~~~~~r~d~~~y~~~~~~pv~lekG 200 (299)
T COG5285 132 ATRWHQDYPLV----SPGYPALVNAWIALCDFTEDNGATLVVPGSHK-------WDVIPERPDHETYLERNAVPVELEKG 200 (299)
T ss_pred ccccccccccc----cCCccceEEEEEeccccccccCceEEEecccc-------cccCCCCCCccchhhhcceeeeecCC
Confidence 35689995433 234566778888898875 4677776 65432 21 11111 023678899999
Q ss_pred eEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEE
Q 030272 137 DALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTK 171 (180)
Q Consensus 137 ~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~ 171 (180)
+||||. +.++|++---+.+.+..+..
T Consensus 201 DallF~---------~~L~HaA~aNrT~~~R~A~~ 226 (299)
T COG5285 201 DALLFN---------GSLWHAAGANRTSADRVALT 226 (299)
T ss_pred CEEEEc---------chhhhhhhcCCCCcccceEE
Confidence 999995 48999999988885444433
No 44
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=79.88 E-value=10 Score=32.17 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=32.7
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
..+.|+|..|.+||--- ...||.. ..+.|.+.....++|+++.-+++-
T Consensus 205 ~Wi~V~p~pg~lvVNiGD~l~~~Tng~~-kS~~HRVv~~~~~~R~Si~~F~~p 256 (321)
T PLN02299 205 EWVDVPPMRHSIVVNLGDQLEVITNGKY-KSVMHRVVAQTDGNRMSIASFYNP 256 (321)
T ss_pred eEEECCCCCCeEEEEeCHHHHHHhCCce-ecccceeecCCCCCEEEEEEEecC
Confidence 37899999998887421 1122332 468999975556689999888764
No 45
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=79.51 E-value=1.9 Score=34.43 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.5
Q ss_pred cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCC--CcCeEEEEEEe
Q 030272 127 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV--IKGNKWSSTKW 172 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV--~~G~K~~~~~W 172 (180)
..+.++-++|++|||.| .+++|+..+. ..|.|+....|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 45678889999999999 5999999999 67789999887
No 46
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=79.05 E-value=4 Score=31.55 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCC
Q 030272 33 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI 112 (180)
Q Consensus 33 ~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~ 112 (180)
+.+..|.++++..++++....+..-|..|.+|+.-.+|.|..... ...-++++-+ |-...|-.-....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~-----~~~pI~SvSL-------G~~r~F~~~~~~~ 141 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPD-----LRAPLLSVSL-------GLPAIFLIGGLKR 141 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccccc-----CCCCEEEEeC-------CCCEEEEecCCcC
Confidence 678899999999888765566778888899999999999942111 1223333321 4444443211000
Q ss_pred CCCccccccccccCcCeeEecceeeEEEEe
Q 030272 113 SAVPWWNELSECGKTGLSIKPKMGDALLFW 142 (180)
Q Consensus 113 ~~~~~~~~~~~c~~~~~~v~P~~G~al~f~ 142 (180)
.+....+.-.-|++|++-
T Consensus 142 ------------~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 142 ------------NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred ------------CCceEEEEeCCCCEEEEC
Confidence 012467888999999985
No 47
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.77 E-value=22 Score=30.57 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=32.9
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
..+.|+|..|.+||--- .-.+|. =..++|.+.+...++||++.-+++-
T Consensus 250 ~Wi~V~p~pg~lVVNiGD~Le~~Tng~-~kSt~HRVv~~~~~~R~Si~fF~~P 301 (348)
T PLN00417 250 KWYKAPIVPDTILINVGDQMEIMSNGI-YKSPVHRVVTNREKERISVATFCIP 301 (348)
T ss_pred eEEECCCCCCcEEEEcChHHHHHhCCe-ecccceEEecCCCCCEEEEEEEecC
Confidence 37899999999887421 011222 3468999976556689999888764
No 48
>PLN02216 protein SRG1
Probab=78.26 E-value=20 Score=30.85 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=52.3
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
.+++.+|.+-. -..+|.|+. .+|+|+.-++ .||==+... +..
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~GLQV~~~------------------g~W 258 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEGLQIKKD------------------GKW 258 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCceeEEEC------------------CEE
Confidence 57888897631 244666642 4666655444 345323221 137
Q ss_pred eeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 129 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 129 ~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
+.|+|..|..||--- ...||. =..++|.+......+|+++.-+++-
T Consensus 259 i~V~p~pgalvVNiGD~L~~~TNG~-~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 259 VSVKPLPNALVVNVGDILEIITNGT-YRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred EECCCCCCeEEEEcchhhHhhcCCe-eeccCceeecCCCCCEEEEEEEecC
Confidence 899999999887311 111232 2368999865445679998877654
No 49
>PTZ00273 oxidase reductase; Provisional
Probab=77.16 E-value=23 Score=29.87 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=31.7
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|.+||--- ...+|. =..++|.+... ..+|+++.-+++-.
T Consensus 225 ~Wi~V~p~pg~lvVNvGD~l~~~TnG~-~kSt~HRVv~~-~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 225 EWMDVPPLEGSFVVNIGDMMEMWSNGR-YRSTPHRVVNT-GVERYSMPFFCEPN 276 (320)
T ss_pred CEEeCCCCCCeEEEEHHHHHHHHHCCe-eeCCCccccCC-CCCeEEEEEEEcCC
Confidence 36899999999887421 112232 23689999744 35799988877643
No 50
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=76.51 E-value=16 Score=31.56 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=31.7
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|.+||--- ...+|. =..++|.+......+|+++.-+++-.
T Consensus 260 ~W~~V~p~pgalVVNiGD~l~~~Tng~-~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 260 AWITVKPVPDAFIVNIGDQIQVLSNAI-YKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred EEEECCCCCCeEEEEcchhhHhhcCCe-eeccceecccCCCCCEEEEEEEecCC
Confidence 37899999999887321 011222 23689999544345799998887653
No 51
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=74.22 E-value=4.5 Score=31.93 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCc----cEEEEcCCCCc-------cCCCCCccccccccCCCCceeEEEEEeecCCCCC
Q 030272 32 DKIIRDIEKRIADFTFFPLENGEG----LQVLHYEAGQK-------YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEG 100 (180)
Q Consensus 32 ~~~~~~l~~Ri~~~~~~~~~~~E~----lqv~~Y~~G~~-------y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~G 100 (180)
+++++.|.....++++......++ ++-.|+..-.. =..|.| |..-++.+++--+++ +|
T Consensus 70 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~D----------G~d~v~~~li~r~Ni-~G 138 (195)
T PF10014_consen 70 NPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRD----------GVDFVFIHLINRHNI-EG 138 (195)
T ss_dssp SHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB------------SSSEEEEEEEEEESE-EE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCC----------CCCEEEEEEEcCCCc-cC
Confidence 567777777777766554422223 33344433111 123444 345566677777666 78
Q ss_pred cceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc
Q 030272 101 GETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 163 (180)
Q Consensus 101 GeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~ 163 (180)
|+|........ ......--..|..+++. |.+.+|.+.||..
T Consensus 139 G~s~i~~~~~~--------------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 139 GESQIYDNDKE--------------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp --EEEEETTSS--------------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred ceEEEEeCCCC--------------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 88888443211 01233445567888775 5799999999874
No 52
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=74.18 E-value=4.8 Score=32.71 Aligned_cols=41 Identities=27% Similarity=0.514 Sum_probs=34.1
Q ss_pred cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc---CeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK---GNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~---G~K~~~~~W~~~ 175 (180)
..+.++-++|++|+|.| .+++|+..+-.. +.+|....|+..
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~~ 261 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVDR 261 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEecC
Confidence 45688899999999999 589999998764 579999999853
No 53
>PLN02704 flavonol synthase
Probab=73.81 E-value=13 Score=31.77 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=32.1
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|.+||--- .-.||. =..++|.+...-..+||++.-+++-.
T Consensus 245 ~Wi~V~p~pg~lvVNvGD~L~~~TNg~-~kSt~HRVv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 245 HWFDVKYIPNALVIHIGDQIEILSNGK-YKSVLHRTTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred EEEeCCCCCCeEEEEechHHHHHhCCe-eecccceeecCCCCCeEEEEEEecCC
Confidence 37899999998877421 011222 24689999654445799998877643
No 54
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=73.26 E-value=47 Score=28.41 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 127 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
..+.|.|..|..||--- ...||.. ..+.|.+......+|+++.-+++-
T Consensus 227 ~Wi~Vpp~pga~VVNiGD~l~~wTNg~~-kSt~HRVv~~~~~~R~SiafF~~P 278 (335)
T PLN02156 227 TWVDVPPDHSSFFVLVGDTLQVMTNGRF-KSVKHRVVTNTKRSRISMIYFAGP 278 (335)
T ss_pred CEEEccCCCCcEEEEhHHHHHHHhCCee-eccceeeecCCCCCEEEEEEeecC
Confidence 37999999999887421 1122322 478999986666689999887763
No 55
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=73.13 E-value=17 Score=31.40 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=32.0
Q ss_pred cCeeEecceeeEEEEeecCC------CCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWSMKP------DASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~------~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|.+|| |+.+ ||. =..++|.+..--..+||++.-+++-.
T Consensus 257 ~Wi~V~p~pg~lvV--NiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 257 KWVTAKCVPDSIVV--HIGDTLEILSNGR-YKSILHRGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred EEEEcCCCCCeEEE--EccHHHHHHhCCc-cccccceeecCCCCCeEEEEEEecCC
Confidence 37899999998877 3321 222 24689997543345799998887754
No 56
>PHA02985 hypothetical protein; Provisional
Probab=72.75 E-value=35 Score=28.39 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCC
Q 030272 32 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN 111 (180)
Q Consensus 32 ~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~ 111 (180)
..++..+++++.+ +.--.+.+++..|+.|+.|.. ....|...+|+=+..+..||..+.-.-..
T Consensus 39 ~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~------------~~~~~~SkilICiqsAkkGG~iIi~~~~~- 101 (271)
T PHA02985 39 KIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQ------------NIPSRLSKIIICIQSAKKGGCIIIINNIT- 101 (271)
T ss_pred hHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEe------------eCCCCceeEEEEEeecccCCEEEEecccc-
Confidence 4566777777644 222345689999998865422 12356788999999999999988833111
Q ss_pred CCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 112 ISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 112 ~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..--.+.|..|.||+-- |.+..-+.||.+|.-.++..=+..+
T Consensus 102 --------------~~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~l~idIP 143 (271)
T PHA02985 102 --------------NNKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIVLDIDIP 143 (271)
T ss_pred --------------cCceEEecCCCeEEEec---------chhhceEEEecCCcEEEEEEEecCC
Confidence 02467999999999975 5788889999999877776544443
No 57
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=71.03 E-value=43 Score=28.50 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=55.7
Q ss_pred ccEEEEcCCCC------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcC
Q 030272 55 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 128 (180)
Q Consensus 55 ~lqv~~Y~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~ 128 (180)
-+++.+|.+.- -..+|.|.. .+|+| |.|...||--+|. .+ +..
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~-~d----------------g~W 225 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFT-KD----------------GKW 225 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEe-cC----------------CeE
Confidence 57888898752 266787742 25555 4444567766664 11 147
Q ss_pred eeEecceeeEEEEeecC------CCCCCCCCCcccCCCCCcCeEEEEEEeee
Q 030272 129 LSIKPKMGDALLFWSMK------PDASLDPSSLHGGCPVIKGNKWSSTKWIR 174 (180)
Q Consensus 129 ~~v~P~~G~al~f~n~~------~~g~~d~~~~H~g~pV~~G~K~~~~~W~~ 174 (180)
+.|+|.+|..|| |+. .||. =..++|.+......+|+++-.++.
T Consensus 226 i~V~P~p~a~vV--NiGD~l~~lSNG~-ykSv~HRV~~n~~~~R~Sia~F~~ 274 (322)
T KOG0143|consen 226 IDVPPIPGAFVV--NIGDMLQILSNGR-YKSVLHRVVVNGEKERISVAFFVF 274 (322)
T ss_pred EECCCCCCCEEE--EcccHHhHhhCCc-ccceEEEEEeCCCCceEEEEEEec
Confidence 999999976665 331 2332 236899999888778888776654
No 58
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=70.56 E-value=22 Score=28.22 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=61.9
Q ss_pred cEeeeeeeecCCCCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCC
Q 030272 19 VRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE 98 (180)
Q Consensus 19 ~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~ 98 (180)
+|.|...-+...-.+.+..+...+...++.+....|..-+..|.+|+.-.+|.|-.... ...-++++-+
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSL------ 139 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSL------ 139 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEec------
Confidence 44444444433223455566777777888888888889999999999999999964321 1122344433
Q ss_pred CCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEe
Q 030272 99 EGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 142 (180)
Q Consensus 99 ~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~ 142 (180)
|....|-.-..+. .+...++.-..|++|++-
T Consensus 140 -g~~~~F~~~~~~r------------~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 140 -GAPCIFRLRGRRR------------RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred -CCCeEEEeccccC------------CCCceeEEecCCCEEEec
Confidence 3333442211100 023678999999999995
No 59
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=70.30 E-value=29 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=31.5
Q ss_pred cCeeEecceeeEEEEeecC------CCCCCCCCCcccCCCCCcCeEEEEEEeeeec
Q 030272 127 TGLSIKPKMGDALLFWSMK------PDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 176 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~------~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~ 176 (180)
..+.|+|..|.+++- |+. .+|. =..++|.+-....++||++.-+++..
T Consensus 200 ~Wi~V~p~p~~~lvV-NvGD~L~~~Tng~-~~S~~HRVv~~~~~~R~Si~~F~~p~ 253 (303)
T PLN02403 200 KWVPIPPSKNNTIFV-NTGDQLEVLSNGR-YKSTLHRVMADKNGSRLSIATFYNPA 253 (303)
T ss_pred eEEECCCCCCCEEEE-EehHHHHHHhCCe-eecccceeecCCCCCEEEEEEEEcCC
Confidence 378999999644433 221 2232 23689999766667899998887643
No 60
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.05 E-value=69 Score=27.49 Aligned_cols=115 Identities=21% Similarity=0.287 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCC--CcceecCCCCC
Q 030272 33 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEE--GGETVFPNAQG 110 (180)
Q Consensus 33 ~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~--GGeT~Fp~~~~ 110 (180)
++++.|.+|+-++--+|. --+..-|..|++|+.-.+|.|... .. |-...+.+|+++.. |=...+-...
T Consensus 190 s~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~-~Pi~slS~lSe~~m~Fg~~~~~~~~~- 259 (323)
T KOG4176|consen 190 SLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FL-DPISSLSFLSECTMEFGHGLLSDNIG- 259 (323)
T ss_pred hHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hc-CceEEEEeecceeEEecccccccCcc-
Confidence 567888888877777776 456788899999999999996432 22 33444556776531 2111111110
Q ss_pred CCCCCccccccccccCcC-eeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeeccc
Q 030272 111 NISAVPWWNELSECGKTG-LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEY 178 (180)
Q Consensus 111 ~~~~~~~~~~~~~c~~~~-~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~~~ 178 (180)
.+ .+ +++.-+.|.+++-.+-.. ....|..+|+. .|.+.-.+++.++.
T Consensus 260 ---------~~-----~g~~s~p~~~g~~lvi~~~~a-----d~~~~~~~~~~--~kRisitfrki~~~ 307 (323)
T KOG4176|consen 260 ---------NF-----RGSLSLPLRYGSVLVIRGRSA-----DVAPHCIRPSR--NKRISITFRKIRPD 307 (323)
T ss_pred ---------cc-----ccccccccccCeEEEeCCCcc-----cccccccCCCC--CceEEEEEEEeccC
Confidence 00 12 677788888888765211 26788999853 47777777776654
No 61
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=67.11 E-value=37 Score=28.88 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=52.2
Q ss_pred ccEEEEcCCCC-------ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCc
Q 030272 55 GLQVLHYEAGQ-------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 127 (180)
Q Consensus 55 ~lqv~~Y~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~ 127 (180)
.+++.+|.+.. -..+|.|.. .+|+|+- | ..||==++..-. .+...
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~~~-------------~~~g~ 234 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLAT--D-GVMGLQICKDKN-------------AMPQK 234 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEee--C-CCCceEEecCCC-------------CCCCc
Confidence 47899998742 135677752 5787743 3 235533333210 01124
Q ss_pred CeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeeee
Q 030272 128 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~ 175 (180)
.+.|+|..|..||--- ...+|. =..++|.+..- ..+||++.-+++-
T Consensus 235 Wi~Vpp~pg~~VVNiGD~L~~wTng~-~kSt~HRVv~~-~~~R~Sia~F~~p 284 (332)
T PLN03002 235 WEYVPPIKGAFIVNLGDMLERWSNGF-FKSTLHRVLGN-GQERYSIPFFVEP 284 (332)
T ss_pred EEECCCCCCeEEEEHHHHHHHHhCCe-eECcCCeecCC-CCCeeEEEEEecC
Confidence 7899999999887421 111222 23689998633 3479988877664
No 62
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.28 E-value=4.8 Score=31.95 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=30.7
Q ss_pred EEEeecC--CCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc
Q 030272 90 VLMYLSD--VEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 163 (180)
Q Consensus 90 ~l~YLnd--~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~ 163 (180)
+.|++=| .-.||||.....+.. +.+..---..|.+++-. |.+.+|.+||+..
T Consensus 148 I~I~~vDR~NI~gGet~lY~~~~~--------------~p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 148 IIIMLVDRQNIDGGETDLYAPDGA--------------SPGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEEeeeccccCceEEEEccCCC--------------CcceEEeccCCcEEEec--------cchhcccccceec
Confidence 3344444 346999988654211 12333334456665543 5799999999864
No 63
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=63.03 E-value=1.2 Score=39.63 Aligned_cols=73 Identities=27% Similarity=0.345 Sum_probs=53.9
Q ss_pred CceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc
Q 030272 84 GQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 163 (180)
Q Consensus 84 ~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~ 163 (180)
.-+......|+||+.+||+..|..-+..+ ....++|+-|+.+-|.+- ..-.|+..+|++
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t--------------~~a~~k~~~~re~~~~~g-------~e~~~~~~~~~k 422 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKT--------------YTAISKPECGRECAFSSG-------AENPHGVKAVTK 422 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccc--------------hhhccccccccchhhhcc-------ccCccchhhhhh
Confidence 45678889999999999999995322111 245788999998888652 245789999999
Q ss_pred CeEEEEEEeeeecc
Q 030272 164 GNKWSSTKWIRVNE 177 (180)
Q Consensus 164 G~K~~~~~W~~~~~ 177 (180)
|..--+..|....+
T Consensus 423 g~e~~~~lw~~~~~ 436 (471)
T KOG4459|consen 423 GLECAVALWPTLAP 436 (471)
T ss_pred hhHHhhhcCcccCh
Confidence 98777777776554
No 64
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=58.42 E-value=59 Score=27.85 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=57.8
Q ss_pred CCCccEEEEcCC------CCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCcccccccccc
Q 030272 52 NGEGLQVLHYEA------GQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECG 125 (180)
Q Consensus 52 ~~E~lqv~~Y~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~ 125 (180)
..+.++++||.. ++.-..|.|+. .+|+|+ .| ..||=-+++...
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl~--Qd-~~~GLqv~~~~g---------------- 220 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLLF--QD-DVGGLEVRPPNG---------------- 220 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEEE--ec-ccCCeEEecCCC----------------
Confidence 345689999984 34456788863 244443 33 446666665431
Q ss_pred CcCeeEecceeeEEEEee----cCCCCCCCCCCcccCCCCCcCeEEEEEEeee
Q 030272 126 KTGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 174 (180)
Q Consensus 126 ~~~~~v~P~~G~al~f~n----~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~ 174 (180)
..+.|.|..|..|+..- ...+|. -..|.|.++--..=+|+++--++.
T Consensus 221 -~Wl~v~P~pgtlvVNiGdmLe~~Tng~-lrST~HRV~~~~~~~R~SipfF~~ 271 (322)
T COG3491 221 -GWLDVPPIPGTLVVNIGDMLERWTNGR-LRSTVHRVRNPPGVDRYSIPFFLE 271 (322)
T ss_pred -CeeECCCCCCeEEEeHHHHHHHHhCCe-eccccceeecCCCccceeeeeecc
Confidence 37999999999999742 112232 347899999775437888876654
No 65
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=51.15 E-value=29 Score=23.43 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=29.7
Q ss_pred EEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 91 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 91 l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
+.-++|...|+...|.... ..+.|....|....|.| ...|.++|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-----------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-----------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-----------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 4445666666666564321 13445555666666665 889999998765
No 66
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=50.10 E-value=33 Score=23.91 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=32.3
Q ss_pred EEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 89 TVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 89 T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
+.+.-++|..+|+...|... ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~------------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS------------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC------------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 44566778888877766531 02455556777766665 789999998654
No 67
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=49.92 E-value=16 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=35.5
Q ss_pred cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeeccc
Q 030272 127 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEY 178 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~~~ 178 (180)
.-+.++=+.|++|+|.| .+++|+..+-. |.||..-.++....|
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d~D~~ 353 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLTRDDF 353 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEccHHH
Confidence 45678888999999999 59999999885 889988888765544
No 68
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=46.65 E-value=20 Score=31.72 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=50.1
Q ss_pred CceeEEEEEeecCCCCCcceecCCCCCCCCC--CccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCC
Q 030272 84 GQRMATVLMYLSDVEEGGETVFPNAQGNISA--VPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV 161 (180)
Q Consensus 84 ~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~--~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV 161 (180)
..|.+|+.+||.+..+||+..|-........ ...|..+.+| =..|.+++..+ .+.|+..+.
T Consensus 280 ~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~--------h~p~qa~LHrg---------~~~~~a~~~ 342 (415)
T KOG1971|consen 280 DAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNS--------HDPGQAYLHRG---------YHKHGARAT 342 (415)
T ss_pred chhhcceeEEecccccCCeeEeeccccccccCCCchhhhccCc--------CCCccceecCc---------chhcccccc
Confidence 5789999999999999999999654321110 1123333322 23467777776 677777777
Q ss_pred CcCeEEEEEEeeeec
Q 030272 162 IKGNKWSSTKWIRVN 176 (180)
Q Consensus 162 ~~G~K~~~~~W~~~~ 176 (180)
+.|..+.-..|+...
T Consensus 343 ~~~~~~~nv~~~~~~ 357 (415)
T KOG1971|consen 343 IVGQPCPNVYWFPIS 357 (415)
T ss_pred CCCCCCCceeeehhH
Confidence 777777777777543
No 69
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=43.76 E-value=25 Score=30.26 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=34.7
Q ss_pred CeeEecceeeEEEEeecCCCCCCCCCCcccCCCCC--cCeEEEEEEeeeeccc
Q 030272 128 GLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVI--KGNKWSSTKWIRVNEY 178 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~--~G~K~~~~~W~~~~~~ 178 (180)
.+..+=++|++|+|.| .+++|+..+-. .|.||..-.++....|
T Consensus 313 ~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d~d~~ 357 (366)
T TIGR02409 313 KFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYADWDGL 357 (366)
T ss_pred EEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEccHHH
Confidence 4677888999999999 58999998875 6789988877765544
No 70
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=40.61 E-value=21 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=23.1
Q ss_pred CCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCC
Q 030272 68 EPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPN 107 (180)
Q Consensus 68 ~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~ 107 (180)
.||.|..... ..-.+++|.-+.-+.+||+|.|-+
T Consensus 95 ~wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIE------TPPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCee------CCCceeEEEEEecCCCCCccHhhh
Confidence 4899976542 122366666677778999999943
No 71
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=39.15 E-value=52 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.6
Q ss_pred eeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 129 LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 129 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
+.++...|..-.|.| ...|.++|+..|
T Consensus 26 ~~~~~~~g~~~A~~n---------~CpH~g~~L~~g 52 (108)
T cd03474 26 LLVAPEGGEFRAFQG---------ICPHQEIPLAEG 52 (108)
T ss_pred EEEEccCCeEEEEcC---------cCCCCCCCcccC
Confidence 345556666666655 788888888766
No 72
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=37.05 E-value=45 Score=25.43 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCc
Q 030272 31 RDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQK 66 (180)
Q Consensus 31 ~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~ 66 (180)
.|.+..+..+||+.. +=||+||..||.
T Consensus 56 ~D~~f~~F~~rl~~~---------P~QvlRY~~gG~ 82 (164)
T PF04194_consen 56 VDKAFLKFQKRLSRN---------PEQVLRYCRGGK 82 (164)
T ss_pred cCHHHHHHHHHHhcC---------CCeEEEECCCCe
Confidence 467788888888863 469999999987
No 73
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=33.76 E-value=20 Score=31.75 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=19.8
Q ss_pred CeeEe-cceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeecc
Q 030272 128 GLSIK-PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNE 177 (180)
Q Consensus 128 ~~~v~-P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~~ 177 (180)
-+.|+ =++|+.|+|.. ++.|++.++..|..+.....|-.-|
T Consensus 318 mv~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yipa~P 359 (416)
T PF07350_consen 318 MVSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYIPACP 359 (416)
T ss_dssp -EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE--B-E
T ss_pred cccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeEecCCC
Confidence 45666 46799999975 8999999999998888776664433
No 74
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=32.88 E-value=71 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=16.1
Q ss_pred cceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 133 PKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 133 P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
...|....|.| ...|.++|+..|
T Consensus 30 ~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 30 TADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred eCCCCEEEEcC---------cCCCCCCCccCC
Confidence 33466666654 889999998876
No 75
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=31.96 E-value=79 Score=24.69 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=30.5
Q ss_pred cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCC-CcCeEEEEEEeeeecc
Q 030272 127 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV-IKGNKWSSTKWIRVNE 177 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV-~~G~K~~~~~W~~~~~ 177 (180)
..+.+.=++|++|+.+. ..+|.+.-. ..+.-.++|.|++...
T Consensus 207 ~~~~~~l~pGD~LfiP~---------gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPP---------GWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-T---------T-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECC---------CCeEEEEEcCCCCeEEEEEEEecccc
Confidence 36788889999999986 899999888 3334889999998653
No 76
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=29.46 E-value=75 Score=23.07 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=38.1
Q ss_pred CceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc
Q 030272 84 GQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 163 (180)
Q Consensus 84 ~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~ 163 (180)
-.+.+..+..+++..+|.-+.|..... .-+-++...|+.-.|.| ...|.++|+..
T Consensus 14 ~~~~W~~v~~~~el~~g~~~~~~v~g~----------------~l~l~r~~~g~v~A~~n---------~CpH~g~~L~~ 68 (129)
T cd04337 14 LRNFWYPVEFSKDLKMDTMVPFELFGQ----------------PWVLFRDEDGTPGCIRD---------ECAHRACPLSL 68 (129)
T ss_pred hhCccEEEEEHHHCCCCCeEEEEECCc----------------EEEEEECCCCcEEEEeC---------cCCCCcCCccc
Confidence 345677777888888777777754321 12344556677777766 88999999887
Q ss_pred C
Q 030272 164 G 164 (180)
Q Consensus 164 G 164 (180)
|
T Consensus 69 G 69 (129)
T cd04337 69 G 69 (129)
T ss_pred C
Confidence 7
No 77
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=27.96 E-value=2.3e+02 Score=24.26 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=24.2
Q ss_pred ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCC
Q 030272 66 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPN 107 (180)
Q Consensus 66 ~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~ 107 (180)
...+|.|..... ..-.+++|.-+.-..+||+|.|-.
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeee
Confidence 355899975432 122356777777778999999965
No 78
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=27.83 E-value=67 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=24.5
Q ss_pred eeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCe---EEEEEEeeeec
Q 030272 129 LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN---KWSSTKWIRVN 176 (180)
Q Consensus 129 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~---K~~~~~W~~~~ 176 (180)
+-++...|..-.|.| ...|+++|+..|. .-.++-.+|.-
T Consensus 27 ~l~r~~~g~v~A~~n---------~C~Hrg~~L~~g~~~~~~~i~CP~Hg~ 68 (123)
T cd03542 27 VITRDKDGELNAFIN---------ACSHRGAMLCRRKQGNKGTFTCPFHGW 68 (123)
T ss_pred EEEECCCCCEEEEcc---------cCcCCCCccccccccCCCEEECcCCCC
Confidence 345556777777776 7899999987652 22444444443
No 79
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=27.58 E-value=87 Score=22.87 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=37.5
Q ss_pred CceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeE-ecceeeEEEEeecCCCCCCCCCCcccCCCCC
Q 030272 84 GQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSI-KPKMGDALLFWSMKPDASLDPSSLHGGCPVI 162 (180)
Q Consensus 84 ~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v-~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~ 162 (180)
-.+.+..+..+.|+..|+...|-... ..+.| +-..|.+-.|.| ...|.+.|+.
T Consensus 14 ~~~~W~~v~~~~el~~~~~~~~~v~g-----------------~~ivl~r~~~G~v~A~~n---------~CpHrga~L~ 67 (134)
T cd04338 14 WREEWYPLYLLKDVPTDAPLGLSVYD-----------------EPFVLFRDQNGQLRCLED---------RCPHRLAKLS 67 (134)
T ss_pred cccCcEEEEEHHHCCCCCCEEEEECC-----------------ceEEEEEcCCCCEEEEcC---------cCCCCcCccc
Confidence 34567788888888888866554321 12333 345677777766 8899999988
Q ss_pred cCe
Q 030272 163 KGN 165 (180)
Q Consensus 163 ~G~ 165 (180)
.|.
T Consensus 68 ~G~ 70 (134)
T cd04338 68 EGQ 70 (134)
T ss_pred CCe
Confidence 874
No 80
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=27.16 E-value=73 Score=21.31 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=21.1
Q ss_pred CeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCe
Q 030272 128 GLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN 165 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~ 165 (180)
.+.+....|....|.| ...|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 3555666777777766 8999999998884
No 81
>PHA02577 2 DNA end protector protein; Provisional
Probab=26.65 E-value=11 Score=29.28 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCCCC
Q 030272 35 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQ 109 (180)
Q Consensus 35 ~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~ 109 (180)
.+...++|..-. -..|++++.+|--|..-||+-..+. ..--. .+-+++|||.....|.|.|.-++
T Consensus 21 ~~WF~~~ikk~~-------r~h~v~kp~~Grly~F~YdAk~Kdt--LpywD-rfPLI~flg~~~~~g~~l~~GLN 85 (181)
T PHA02577 21 LEWFTETIKKDI-------RGHQVVKPQPGRLYTFEYDAKHKDT--LPYWD-RFPLIIFLGSGQSKAHTLMYGLN 85 (181)
T ss_pred HHHHHHHHHhhc-------cccccccCcCceEEEEEecccccCc--ccccc-cCcEEEEEecCCCCCcceEeeee
Confidence 344555555422 2579999999988877777654321 11112 35689999999888999998653
No 82
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=26.56 E-value=1.2e+02 Score=20.33 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.5
Q ss_pred CCCcccCCCCCcC
Q 030272 152 PSSLHGGCPVIKG 164 (180)
Q Consensus 152 ~~~~H~g~pV~~G 164 (180)
....|.++|+..|
T Consensus 38 ~~CpH~g~~L~~g 50 (95)
T cd03478 38 AKCPHYGAPLAKG 50 (95)
T ss_pred CcCcCCCCccCCC
Confidence 4889999998765
No 83
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=26.53 E-value=82 Score=25.89 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=28.1
Q ss_pred cCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC-eEEEEEEee
Q 030272 127 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG-NKWSSTKWI 173 (180)
Q Consensus 127 ~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G-~K~~~~~W~ 173 (180)
..++.+=+.|++|+|.| .+++|.+.+-..+ .|..-...+
T Consensus 232 ~~~~~~w~~GD~viwDN--------r~~~H~a~~~~~~~~R~~~R~~v 271 (277)
T PRK09553 232 FQVRWRWQPNDVAIWDN--------RVTQHYANADYLPQRRIMHRATI 271 (277)
T ss_pred eEEEEecCCCCEEEEcC--------cceeEecccCCCCCceEEEEEee
Confidence 45788999999999999 5899988765543 344444433
No 84
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=26.49 E-value=1.4e+02 Score=19.98 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCCCcccCCCCCcCe--EEEEEEeeeeccc
Q 030272 151 DPSSLHGGCPVIKGN--KWSSTKWIRVNEY 178 (180)
Q Consensus 151 d~~~~H~g~pV~~G~--K~~~~~W~~~~~~ 178 (180)
+....|.++|+..|. .-.++-..|...|
T Consensus 39 ~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f 68 (98)
T cd03467 39 SNRCTHQGCPLSEGEGEDGCIVCPCHGSRF 68 (98)
T ss_pred cCcCCCCCccCCcCccCCCEEEeCCCCCEE
Confidence 458899999998763 4455555555444
No 85
>PRK02963 carbon starvation induced protein; Validated
Probab=25.67 E-value=84 Score=26.91 Aligned_cols=34 Identities=24% Similarity=0.085 Sum_probs=26.4
Q ss_pred CeeEecceeeEEEEeecCCCCCCCCCCcccCCCCC---cCeEEEE
Q 030272 128 GLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVI---KGNKWSS 169 (180)
Q Consensus 128 ~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~---~G~K~~~ 169 (180)
-+.++=+.|++|+|.| .+.+|+-..-. .|.|+.|
T Consensus 266 ~~~fkL~pGd~vvfDN--------~RVLHGR~aF~~~~g~~R~L~ 302 (316)
T PRK02963 266 ILSVPVPVGKFLLINN--------LFWLHGRDRFTPHPDLRRELM 302 (316)
T ss_pred EEEEecCCceEEEEeC--------eEEeeCCCCcCCCCCCceEEE
Confidence 4677888999999999 69999988864 2456653
No 86
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=25.17 E-value=66 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=17.2
Q ss_pred EecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 131 IKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 131 v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
++-..|..-.|.| ...|.++|+..|
T Consensus 31 ~r~~~g~~~A~~n---------~CpHrg~~L~~g 55 (123)
T cd03535 31 CRDEDGEIRAMFN---------SCRHRGMQVCRA 55 (123)
T ss_pred EECCCCCEEEEcc---------cCccCCCEeecc
Confidence 3445566666665 788898888765
No 87
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.62 E-value=1.5e+02 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCcc
Q 030272 32 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYF 74 (180)
Q Consensus 32 ~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~ 74 (180)
.+.++.+...|.++--++. .....-|-.|.+||--.||.|+-
T Consensus 67 P~wLq~~v~kinnlglF~s-~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 67 PPWLQYYVDKINNLGLFKS-PANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred CHHHHHHHHHhhcccccCC-CcceeEeecccCCCCcCcCCCCC
Confidence 3566777777775433332 33456788899999999999973
No 88
>PLN00139 hypothetical protein; Provisional
Probab=24.18 E-value=93 Score=26.46 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=22.4
Q ss_pred ccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCC
Q 030272 66 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPN 107 (180)
Q Consensus 66 ~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~ 107 (180)
...+|.|..... ..-..++|.-+.-+.+||+|.|-+
T Consensus 112 ~i~~H~E~sy~~------~pP~~~~f~C~~~p~~GGeT~~aD 147 (320)
T PLN00139 112 FIYYHHEMVLIK------ESPKKVILFCEIPPPEGGQTPFVP 147 (320)
T ss_pred cccccccccCcc------CCCceEEEEecccCCCCCCCeeec
Confidence 456888875432 122345555556667899999954
No 89
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=23.43 E-value=1e+02 Score=24.76 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=24.9
Q ss_pred CccCCCCCccccccccCCCCceeEEEEEeecCCCCCcceecCC
Q 030272 65 QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPN 107 (180)
Q Consensus 65 ~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~ 107 (180)
....+|.|..... ..-.+.+|.-|....+||+|.|-.
T Consensus 94 ~~l~~HtD~~y~~------~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHE------YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCC------CCCceEEEEEeccCCCCCcceeee
Confidence 4556898875432 122456666677778899999975
No 90
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=23.20 E-value=63 Score=26.90 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCccccccccCCCCceeEEEEEeecCC------CCCcceecCCCCC
Q 030272 37 DIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV------EEGGETVFPNAQG 110 (180)
Q Consensus 37 ~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~------~~GGeT~Fp~~~~ 110 (180)
.+.+.+..+||+.+.. ..+++.|+.+|.-|..=+|.. ...-.+-+.++|+.. +-||-+.+-..+.
T Consensus 121 aF~~~L~~~TgL~l~~-~~~~~RRfr~G~dYTLa~~~~--------~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~d~ 191 (266)
T PF10637_consen 121 AFFKWLSNLTGLDLTS-CQIEARRFRPGLDYTLATDED--------EEEPRLDVTLCLTPSKGWESGEVGGYECYMAGDD 191 (266)
T ss_dssp HHHHHHHHHHSEEE-E-EEEEEEEE-TTT-EE--B-----------EEEEEEEEEEEE---S-TTTTTT---EEEEE---
T ss_pred HHHHHHHHHHCCCCcc-CceEEEEccCCCCeEEecCCC--------CCceEEEEEEEecCCCCCCCCccccEEEEEcCCC
Confidence 3455566778886543 358999999997777655543 234567788888854 5688888853221
Q ss_pred CCCCCccc-cc-cccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCC---CcCeEEEEEEee
Q 030272 111 NISAVPWW-NE-LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV---IKGNKWSSTKWI 173 (180)
Q Consensus 111 ~~~~~~~~-~~-~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV---~~G~K~~~~~W~ 173 (180)
...+++.. .. -.+-++.-++|.|.--++-+-+- |+.++.=++=| ..|.||-+..=+
T Consensus 192 ~~~~d~avY~~~~~~ed~~Llt~~p~~N~LsLVlR-------D~gvlrFVKYVs~~A~gsRWDi~~~~ 252 (266)
T PF10637_consen 192 DDDEDPAVYKSSDDDEDEELLTVPPSWNSLSLVLR-------DEGVLRFVKYVSHSAKGSRWDISGEY 252 (266)
T ss_dssp ------------------EEEEE---EEEEEEEEE--------TTEEEEE----TT-SS-EEEEEEEE
T ss_pred CccccccceeccccCCCceeEEccCCCCeEEEEEe-------cCCeEEEEEEeECCCCCCceeEEEEE
Confidence 11111110 00 00001123678888877554432 34433333222 247888765433
No 91
>PF08489 DUF1743: Domain of unknown function (DUF1743); InterPro: IPR013696 This domain of unknown function is found in many hypothetical proteins and predicted DNA-binding proteins such as transcription-associated proteins. It is found in bacteria and archaea. ; PDB: 3AU7_A 3AMU_A 3AMT_A 3U02_D.
Probab=21.93 E-value=41 Score=24.24 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=12.1
Q ss_pred EeecCCCCCCCCCCcccCCCCCcCe
Q 030272 141 FWSMKPDASLDPSSLHGGCPVIKGN 165 (180)
Q Consensus 141 f~n~~~~g~~d~~~~H~g~pV~~G~ 165 (180)
|.|+.....-...+.|++|||.-|-
T Consensus 57 ~~~vd~~~~~~~isp~t~~pVl~Gi 81 (118)
T PF08489_consen 57 FDNVDYANKRVTISPHTPDPVLYGI 81 (118)
T ss_dssp CTSEBTTTTCECCS--TTSSEEEEE
T ss_pred HHHHHHhcceeeecCCCCCceEEec
Confidence 4444333333345677777777664
No 92
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=21.89 E-value=85 Score=22.78 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=32.9
Q ss_pred eeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 86 RMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 86 R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
+....+..++++.++|....-.+... .-+-++...|..-.|.| ...|.++|+..|
T Consensus 7 ~~W~~v~~~~el~~~g~~~~~~~~~~---------------~i~l~r~~~g~i~A~~n---------~C~Hrg~~L~~g 61 (128)
T cd03472 7 RSWLLLGHETHIPKAGDYLTTYMGED---------------PVIVVRQKDGSIRVFLN---------QCRHRGMRICRS 61 (128)
T ss_pred CCCeEeEEHHHCCCCCCEEEEEECCc---------------eEEEEECCCCCEEEEhh---------hCcCCCCeeecc
Confidence 34566677777776665322111100 01345566777777766 789999998765
No 93
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=21.03 E-value=1.9e+02 Score=20.71 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=33.7
Q ss_pred eeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcCeEEEEEEeeeeccccC
Q 030272 129 LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 180 (180)
Q Consensus 129 ~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G~K~~~~~W~~~~~~~~ 180 (180)
+.+++.. +.|+..+. .+|.....-.+...|...|.-..+...+....|+|
T Consensus 43 ~n~rf~~-~~iV~Ns~-~~g~Wg~Eer~~~~Pf~~g~~F~l~i~~~~~~f~i 92 (128)
T smart00276 43 FNPRFNE-NKIVCNSK-LNGSWGSEEREGGFPFQPGQPFDLTIIVQPDHFQI 92 (128)
T ss_pred EeccCCC-CEEEEeCc-cCCccchheEcCCCCCCCCCEEEEEEEEcCCEEEE
Confidence 3444443 56666544 45655445556789999999999988888777753
No 94
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=20.26 E-value=4.1e+02 Score=20.74 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCcceecCCCCCCCC-CCccc-cccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCcC
Q 030272 99 EGGETVFPNAQGNIS-AVPWW-NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 164 (180)
Q Consensus 99 ~GGeT~Fp~~~~~~~-~~~~~-~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~G 164 (180)
.||||.|+....... +.|.. +.+.+ ...+...| |++.=|-|..+|-+ -++|....-+.|
T Consensus 101 ~G~E~n~~y~~~~~~~~~P~~qdk~~a--pgeV~lSp--gdihsv~n~~sdrs---~aiHvy~a~ig~ 161 (191)
T COG5553 101 WGGETNFIYPLAGEEVDEPERQDKFAA--PGEVHLSP--GDIHSVANTGSDRS---GAIHVYLADIGG 161 (191)
T ss_pred ecccccceecccCCCCCCcchhhhhcC--cceEeeCC--CCeeeecccCCCcc---ceEEEEecccCC
Confidence 699999976533221 11110 00111 01244555 88888877665522 355655554444
No 95
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=20.20 E-value=1.8e+02 Score=21.25 Aligned_cols=69 Identities=14% Similarity=0.049 Sum_probs=44.1
Q ss_pred CceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEe-cc-eeeEEEEeecCCCCCCCCCCcccCCCC
Q 030272 84 GQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIK-PK-MGDALLFWSMKPDASLDPSSLHGGCPV 161 (180)
Q Consensus 84 ~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~-P~-~G~al~f~n~~~~g~~d~~~~H~g~pV 161 (180)
-.+.+..+..++++..|+-+.|-... ..+.|. -+ .|..-.|.| ...|.+.|+
T Consensus 14 ~~~~W~~v~~~~el~~g~~~~~~~~g-----------------~~i~v~r~~~dG~~~A~~n---------~CpHrga~L 67 (138)
T cd03480 14 WREVWYPVAYVEDLDPSRPTPFTLLG-----------------RDLVIWWDRNSQQWRAFDD---------QCPHRLAPL 67 (138)
T ss_pred CccceEEEEEHHHCCCCCcEEEEECC-----------------eeEEEEEECCCCEEEEEcC---------CCcCCcCcc
Confidence 34567778888888887766664321 123333 33 677777776 899999999
Q ss_pred CcCeE---EEEEEeeeeccc
Q 030272 162 IKGNK---WSSTKWIRVNEY 178 (180)
Q Consensus 162 ~~G~K---~~~~~W~~~~~~ 178 (180)
..|.- =.++-.+|.-.|
T Consensus 68 ~~G~~~~~~~i~CP~Hgw~F 87 (138)
T cd03480 68 SEGRIDEEGCLECPYHGWSF 87 (138)
T ss_pred ccceEcCCCEEEeCCCCCEE
Confidence 88842 245555555443
Done!