BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030273
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+CNYV Y SL + KG+ + F+HVP
Sbjct: 141 LCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+CNYV Y SL + KG+ + F+HVP
Sbjct: 141 LCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
G+ +G V LP + + + +T + I IHVG+ G S ++ER AV
Sbjct: 28 GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70 NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
N PD G + + P+V G + ++L + I+K L ++G IS+ AG +
Sbjct: 84 NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
+ NYV Y SL + KG+ + F+HVP
Sbjct: 141 LSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
LP K + + + I I++G+ G + ++ER AVN PD G QP+
Sbjct: 38 LPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKD 97
Query: 87 IPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG 146
P+V +GG + T + T I++ +KK G V+S AG ++CN+ Y +L + KG
Sbjct: 98 EPIV--EGGPAAYFAT-IPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKG 154
Query: 147 HKSL--FVHVP 155
+ + F+HVP
Sbjct: 155 YPKIAGFIHVP 165
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 49 IWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEA 108
I I++G+ S +ER AVN PD G+QP + ED ++ +L A
Sbjct: 64 IVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPID-EKIEEDAPLAY--MATLPVRA 120
Query: 109 ILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 155
I K L+ G IS AG ++CNYV + +L F++ +G+ K+ F+HVP
Sbjct: 121 ITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVP 169
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 51 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 110
I VG G + +ER A+N PD G QP PV+++ SR L + ++
Sbjct: 88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR---LPIKTMV 144
Query: 111 KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 155
L G +S AG FVCN+V Y L + Q + F+HVP
Sbjct: 145 NALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVP 191
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 51 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 110
I VG G + +ER A+N PD G QP PV+++ SR L + +
Sbjct: 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR---LPIKTXV 123
Query: 111 KFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVPLF 157
L G +S AG FVCN+V Y L + Q + F+HVP
Sbjct: 124 NALNTAGIPASVSQTAGTFVCNHVXYGLLHYLAQNTPSVRGGFIHVPYL 172
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
LPT K +++ I++T +N + + +G G + ER A+N PD +QP
Sbjct: 43 LPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPID 102
Query: 87 IPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG 146
+ L DG + + ++L +A + + +G +S+ AG FVCN+ YH L + + K
Sbjct: 103 QAIHL-DG--APAYFSNLPVKAXTQSIINQGLPGALSNSAGTFVCNHTLYH-LGYLQDKH 158
Query: 147 HKSL---FVHVP 155
+ L F+HVP
Sbjct: 159 YPHLRFGFIHVP 170
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 51 IHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAIL 110
I +G G +ER A+N D G QP +PVV E+G + ++L +AI+
Sbjct: 66 ICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVV-EEG--PAAYWSTLPXKAIV 122
Query: 111 KFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVPLF 157
K L+++G +S AG FV N+++Y H L + K K F+H+P
Sbjct: 123 KKLQEEGIPASVSQTAGTFVXNHLFYGLXHELEKHDTK-XKGGFIHIPFL 171
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
+PT+ + + + ++ I I VG G + ER A+N PD G QP
Sbjct: 43 VPTVFYKSLAVLREAMKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQP-- 100
Query: 87 IPVVLED--GGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAE 143
V ED G + T L + I++ +KK+G +S AG FVCN+++Y + +
Sbjct: 101 ---VGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISR 157
Query: 144 QKGH-KSLFVHVP 155
H + F+H+P
Sbjct: 158 HHPHIRGGFIHIP 170
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
+PT+ + + + ++ I I VG G + ER A+N PD G QP
Sbjct: 43 VPTVFYKSLAVLREAIKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQP-- 100
Query: 87 IPVVLED--GGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAE 143
V ED G + T L + I++ +KK+G +S AG FVCN+++Y + +
Sbjct: 101 ---VGEDISQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISR 157
Query: 144 QKGH-KSLFVHVPLF 157
H + F+H+P
Sbjct: 158 HHPHIRGGFIHIPYI 172
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Query: 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
LP + L ++ + + + +H+G+ LER AVN F PD G +
Sbjct: 39 LPVDAEALGEALEDLHREGPKAV-LHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLED 97
Query: 87 IPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQK 145
+P+V GG + + +L ++ G S AG ++CN +Y SL R E+
Sbjct: 98 LPIV--PGG-PLALPARFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLPEEV 154
Query: 146 GHKSLFVHVPLFSTIDEDTQMQFVATLFEAVA 177
F+H+P T+ +V +A A
Sbjct: 155 --PVGFLHLPPDETLALKRPRPYVPLEVQARA 184
>pdb|1MA9|A Chain A, Crystal Structure Of The Complex Of Human Vitamin D
Binding Protein And Rabbit Muscle Actin
Length = 458
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 21 AAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL 80
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 58 CCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAAL 110
Query: 81 GWQPQQIPVVLE 92
QPQ+ P +E
Sbjct: 111 KHQPQEFPTYVE 122
>pdb|1KW2|A Chain A, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KW2|B Chain B, Crystal Structure Of Uncomplexed Vitamin D-Binding Protein
pdb|1KXP|D Chain D, Crystal Structure Of Human Vitamin D-binding Protein In
Complex With Skeletal Actin
Length = 458
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 21 AAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL 80
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 58 CCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAAL 110
Query: 81 GWQPQQIPVVLE 92
QPQ+ P +E
Sbjct: 111 KHQPQEFPTYVE 122
>pdb|1J78|A Chain A, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J78|B Chain B, Crystallographic Analysis Of The Human Vitamin D Binding
Protein
pdb|1J7E|A Chain A, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1J7E|B Chain B, A Structural Basis For The Unique Binding Features Of The
Human Vitamin D-Binding Protein
pdb|1LOT|A Chain A, Crystal Structure Of The Complex Of Actin With Vitamin
D-Binding Protein
Length = 458
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 21 AAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL 80
+GA P T S++S + + +H G +K LER+ LC L
Sbjct: 58 CCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKEGLERK-------LCMAAL 110
Query: 81 GWQPQQIPVVLE 92
QPQ+ P +E
Sbjct: 111 KHQPQEFPTYVE 122
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSK 61
L+E+ + + GS + +A + L L K + Q VI I VGVN G
Sbjct: 114 LREDIMSGKLKSGS-EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMI-VGVNGGGKT 171
Query: 62 FALER---RAVNEATFL-----------CPDQLG-WQPQQ-IPVVLEDGGISRSRQTSLS 105
+L + R NE T + DQL W + +V+ +G +++ ++
Sbjct: 172 TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG--DKAKAATVL 229
Query: 106 TEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL 139
++A+ K K++G+DVV+ D +GR NY L
Sbjct: 230 SKAV-KRGKEEGYDVVLCDTSGRLHTNYSLMEEL 262
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSK 61
L+E+ + + GS + +A + L L K + Q VI I VGVN G
Sbjct: 57 LREDIMSGKLKSGS-EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMI-VGVNGGGKT 114
Query: 62 FALER---RAVNEATFL-----------CPDQLG-WQPQQ-IPVVLEDGGISRSRQTSLS 105
+L + R NE T + DQL W + +V+ +G +++ ++
Sbjct: 115 TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG--DKAKAATVL 172
Query: 106 TEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL 139
++A+ K K++G+DVV+ D +GR NY L
Sbjct: 173 SKAV-KRGKEEGYDVVLCDTSGRLHTNYSLMEEL 205
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHK 148
+V+ +G + R ++ ++A+ + +++ FDVV+ D +GR NY LR ++ K
Sbjct: 174 IVMAEG--PKPRPAAVLSQAVRRAVEED-FDVVLCDTSGRLHTNYNLMEELRGCKRAVSK 230
Query: 149 SL 150
+L
Sbjct: 231 AL 232
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 6 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADGTL 65
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 66 QRRALRERIFANPEEKNW 83
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 6 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADGTL 65
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 66 QRRALRERIFANPEEKNW 83
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 133 YVYYHSLRFAEQKGHKSLFV 152
Y+YYHSLR E++G +F+
Sbjct: 126 YIYYHSLRILEKEGINEVFI 145
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 6 GLPAGVTLGSCTVLEAAGDGALPTL-LKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
L G+ G TV A D + + + + + I H G N ++ L
Sbjct: 8 ALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTL 67
Query: 65 ERRAVNEATFLCPDQLGW 82
+RRA+ E F P++ W
Sbjct: 68 QRRALRERIFANPEEKNW 85
>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
Length = 226
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 101 QTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHK 148
+T+++ + +K L++KG +VV+ +D + N + + L F K +
Sbjct: 124 KTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKE 171
>pdb|1MIO|B Chain B, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|D Chain D, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 458
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 60 SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSR-QTSLSTEAILKFLKKKGF 118
SKF +E A+ + + +Q ++I +L + GI S+ + + +++K +G
Sbjct: 328 SKFIIELGAIPKYVVTGTPGMKFQ-KEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGV 386
Query: 119 DVVISDDAGRFVCNYVYYHSLRFA----EQKGH 147
D++IS+ G+F+ +RF ++ GH
Sbjct: 387 DLLISNTYGKFIAREENIPFVRFGFPIMDRYGH 419
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 80 LGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL 139
LGW+ + VV G RQ L+ L+KKG DVV D G YH++
Sbjct: 264 LGWR---VMVVGCHGDPMIDRQMELAER-----LEKKGVDVVAQFDVGG-------YHAV 308
Query: 140 RFAEQKGHKSLFV 152
+ + + K FV
Sbjct: 309 KLEDPEKAKQFFV 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,951,626
Number of Sequences: 62578
Number of extensions: 186265
Number of successful extensions: 533
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 35
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)