Query 030274
Match_columns 180
No_of_seqs 240 out of 2377
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 1.2E-24 2.5E-29 158.5 10.3 123 49-179 14-145 (173)
2 PF05175 MTS: Methyltransferas 99.7 8.1E-16 1.8E-20 111.8 11.7 101 48-167 8-111 (170)
3 COG3897 Predicted methyltransf 99.7 1.2E-16 2.6E-21 115.4 5.9 109 48-174 53-163 (218)
4 KOG3201 Uncharacterized conser 99.6 9.9E-17 2.1E-21 112.5 3.7 123 48-179 2-129 (201)
5 COG2890 HemK Methylase of poly 99.6 9.5E-15 2E-19 113.9 10.7 118 24-168 71-190 (280)
6 COG2813 RsmC 16S RNA G1207 met 99.6 9E-15 2E-19 113.0 9.3 108 33-166 126-236 (300)
7 COG4123 Predicted O-methyltran 99.6 1.2E-14 2.7E-19 110.1 9.6 103 52-169 26-130 (248)
8 PRK15001 SAM-dependent 23S rib 99.6 3.1E-14 6.8E-19 114.7 12.3 119 26-166 189-310 (378)
9 PF06325 PrmA: Ribosomal prote 99.6 2.1E-14 4.5E-19 112.2 10.3 94 50-162 139-233 (295)
10 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.5E-14 3.3E-19 108.2 8.9 91 73-178 58-149 (243)
11 KOG2793 Putative N2,N2-dimethy 99.5 8.2E-14 1.8E-18 105.6 10.7 124 49-178 50-187 (248)
12 PF12847 Methyltransf_18: Meth 99.5 6.4E-14 1.4E-18 94.5 8.9 76 74-162 1-78 (112)
13 COG2264 PrmA Ribosomal protein 99.5 4E-14 8.6E-19 110.0 8.4 97 50-162 140-237 (300)
14 PRK03522 rumB 23S rRNA methylu 99.5 4.6E-13 1E-17 106.3 12.5 104 48-164 147-250 (315)
15 KOG1270 Methyltransferases [Co 99.5 5.3E-14 1.2E-18 106.2 6.7 95 74-179 89-184 (282)
16 TIGR02085 meth_trns_rumB 23S r 99.5 6.6E-13 1.4E-17 107.6 12.7 115 48-176 207-321 (374)
17 PRK14966 unknown domain/N5-glu 99.5 9.4E-13 2E-17 106.7 13.5 121 21-167 210-332 (423)
18 PRK13168 rumA 23S rRNA m(5)U19 99.5 5E-13 1.1E-17 110.6 11.7 117 31-165 262-378 (443)
19 PF13847 Methyltransf_31: Meth 99.5 5.4E-13 1.2E-17 95.1 10.3 93 74-179 3-99 (152)
20 PRK11207 tellurite resistance 99.5 1.2E-12 2.5E-17 97.4 11.2 91 74-179 30-123 (197)
21 TIGR03704 PrmC_rel_meth putati 99.4 1.4E-12 3E-17 100.4 11.6 118 24-166 45-165 (251)
22 TIGR03533 L3_gln_methyl protei 99.4 1.2E-12 2.5E-17 102.5 11.1 79 74-166 121-201 (284)
23 COG2263 Predicted RNA methylas 99.4 1.5E-12 3.3E-17 94.1 10.5 79 69-165 40-119 (198)
24 TIGR00477 tehB tellurite resis 99.4 1.7E-12 3.7E-17 96.3 11.1 89 74-178 30-121 (195)
25 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.1E-12 2.4E-17 97.3 9.5 109 56-177 34-144 (199)
26 TIGR00537 hemK_rel_arch HemK-r 99.4 1.3E-12 2.7E-17 95.7 9.4 86 60-166 9-94 (179)
27 PLN02396 hexaprenyldihydroxybe 99.4 2.1E-12 4.5E-17 102.5 10.9 94 73-179 130-224 (322)
28 PRK11036 putative S-adenosyl-L 99.4 2.4E-12 5.2E-17 99.3 10.9 94 74-179 44-138 (255)
29 PRK09489 rsmC 16S ribosomal RN 99.4 8.4E-12 1.8E-16 99.9 14.1 98 48-166 173-273 (342)
30 PF03848 TehB: Tellurite resis 99.4 2.8E-12 6.1E-17 94.2 10.4 81 72-168 28-108 (192)
31 TIGR00479 rumA 23S rRNA (uraci 99.4 4.4E-12 9.6E-17 104.7 12.8 107 48-164 266-372 (431)
32 PRK11805 N5-glutamine S-adenos 99.4 3.9E-12 8.4E-17 100.5 10.8 77 76-166 135-213 (307)
33 TIGR00536 hemK_fam HemK family 99.4 4.8E-12 1E-16 99.1 10.8 120 24-167 73-195 (284)
34 PRK05031 tRNA (uracil-5-)-meth 99.4 9.9E-12 2.2E-16 100.4 12.8 118 48-176 181-309 (362)
35 PRK14967 putative methyltransf 99.4 6.5E-12 1.4E-16 95.1 10.1 92 58-166 21-113 (223)
36 COG2518 Pcm Protein-L-isoaspar 99.4 6.3E-12 1.4E-16 92.9 9.3 118 17-163 30-147 (209)
37 TIGR02021 BchM-ChlM magnesium 99.4 1.3E-11 2.8E-16 93.1 11.3 79 73-167 54-132 (219)
38 PLN02244 tocopherol O-methyltr 99.3 2E-11 4.4E-16 97.8 12.9 93 73-178 117-211 (340)
39 PRK01544 bifunctional N5-gluta 99.3 5.3E-12 1.1E-16 105.9 9.8 120 24-167 74-219 (506)
40 PRK11727 23S rRNA mA1618 methy 99.3 5.9E-12 1.3E-16 99.5 9.4 87 74-169 114-204 (321)
41 PLN02585 magnesium protoporphy 99.3 1.3E-11 2.7E-16 97.7 11.1 82 74-167 144-225 (315)
42 PLN02672 methionine S-methyltr 99.3 1.5E-11 3.3E-16 109.7 12.6 105 57-167 100-216 (1082)
43 PRK12335 tellurite resistance 99.3 1.4E-11 3E-16 96.6 11.1 78 74-167 120-197 (287)
44 TIGR03587 Pse_Me-ase pseudamin 99.3 1.3E-11 2.9E-16 92.1 10.0 83 74-176 43-127 (204)
45 PRK15128 23S rRNA m(5)C1962 me 99.3 8.5E-11 1.8E-15 95.8 14.8 89 74-170 220-309 (396)
46 PF13659 Methyltransf_26: Meth 99.3 3.4E-12 7.3E-17 86.8 5.5 81 75-166 1-82 (117)
47 TIGR00406 prmA ribosomal prote 99.3 2.5E-11 5.4E-16 95.3 11.0 97 50-163 137-234 (288)
48 PRK10258 biotin biosynthesis p 99.3 1.8E-11 3.9E-16 94.1 9.9 97 63-178 31-128 (251)
49 PF05958 tRNA_U5-meth_tr: tRNA 99.3 1.5E-11 3.2E-16 99.0 9.6 72 48-120 171-242 (352)
50 PRK13944 protein-L-isoaspartat 99.3 1.8E-11 3.9E-16 91.5 9.3 92 62-166 60-154 (205)
51 KOG2904 Predicted methyltransf 99.3 1.8E-11 3.8E-16 93.1 9.2 100 57-168 128-236 (328)
52 TIGR00080 pimt protein-L-isoas 99.3 3.5E-11 7.6E-16 90.6 11.0 91 60-164 63-156 (215)
53 KOG2187 tRNA uracil-5-methyltr 99.3 1.3E-11 2.7E-16 101.0 8.8 87 27-121 344-430 (534)
54 PRK00107 gidB 16S rRNA methylt 99.3 5E-11 1.1E-15 87.8 11.2 74 74-162 45-120 (187)
55 PRK00517 prmA ribosomal protei 99.3 2.4E-11 5.2E-16 93.5 9.8 68 51-120 98-166 (250)
56 TIGR00138 gidB 16S rRNA methyl 99.3 3E-11 6.5E-16 88.6 9.9 74 74-162 42-117 (181)
57 COG2265 TrmA SAM-dependent met 99.3 2E-11 4.3E-16 100.2 9.7 105 48-163 267-371 (432)
58 PTZ00098 phosphoethanolamine N 99.3 3E-11 6.5E-16 93.6 10.2 110 54-179 32-145 (263)
59 TIGR02143 trmA_only tRNA (urac 99.3 8.1E-11 1.7E-15 94.8 13.0 72 48-120 172-243 (353)
60 smart00650 rADc Ribosomal RNA 99.3 2.3E-11 4.9E-16 88.2 8.9 85 66-166 5-89 (169)
61 PRK09328 N5-glutamine S-adenos 99.3 3.5E-11 7.5E-16 93.6 10.4 96 56-166 90-187 (275)
62 PF05401 NodS: Nodulation prot 99.3 1.6E-11 3.6E-16 89.6 7.5 80 74-170 43-122 (201)
63 PF08241 Methyltransf_11: Meth 99.3 2.5E-11 5.4E-16 78.9 7.5 83 79-178 1-85 (95)
64 COG2230 Cfa Cyclopropane fatty 99.3 7.5E-11 1.6E-15 91.1 11.2 93 58-166 56-149 (283)
65 TIGR00452 methyltransferase, p 99.3 7.6E-11 1.6E-15 93.2 11.4 97 70-180 117-215 (314)
66 PRK14968 putative methyltransf 99.3 2.6E-11 5.6E-16 88.9 8.2 94 56-166 9-102 (188)
67 PLN02336 phosphoethanolamine N 99.3 7.6E-11 1.6E-15 98.5 12.0 93 72-179 264-358 (475)
68 TIGR03534 RF_mod_PrmC protein- 99.3 2.7E-11 5.8E-16 92.9 8.2 96 55-166 69-166 (251)
69 PRK15068 tRNA mo(5)U34 methylt 99.3 9.4E-11 2E-15 93.3 11.5 110 55-179 104-215 (322)
70 PF02353 CMAS: Mycolic acid cy 99.3 8.6E-11 1.9E-15 91.4 11.0 105 58-178 46-154 (273)
71 PRK07580 Mg-protoporphyrin IX 99.2 1.5E-10 3.2E-15 87.7 12.1 77 74-166 63-139 (230)
72 COG1092 Predicted SAM-dependen 99.2 1.7E-10 3.7E-15 93.3 12.9 125 28-172 181-308 (393)
73 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.4E-15 101.6 12.4 83 74-167 538-621 (702)
74 PRK01683 trans-aconitate 2-met 99.2 7.8E-11 1.7E-15 90.9 10.3 94 66-179 23-119 (258)
75 PRK14103 trans-aconitate 2-met 99.2 6.8E-11 1.5E-15 91.2 9.7 86 72-179 27-115 (255)
76 TIGR00095 RNA methyltransferas 99.2 1.1E-10 2.3E-15 86.3 10.3 66 55-120 29-96 (189)
77 PF08242 Methyltransf_12: Meth 99.2 6.1E-13 1.3E-17 88.0 -1.8 88 79-178 1-91 (99)
78 TIGR02752 MenG_heptapren 2-hep 99.2 2.9E-10 6.3E-15 86.3 12.1 91 73-177 44-138 (231)
79 PRK05134 bifunctional 3-demeth 99.2 2.2E-10 4.8E-15 87.1 11.3 103 62-178 36-139 (233)
80 PRK06202 hypothetical protein; 99.2 2E-10 4.4E-15 87.3 11.0 80 74-170 60-145 (232)
81 PHA03412 putative methyltransf 99.2 3.1E-11 6.7E-16 91.0 6.2 73 74-166 49-126 (241)
82 TIGR02469 CbiT precorrin-6Y C5 99.2 5.5E-10 1.2E-14 76.2 12.0 85 66-163 11-97 (124)
83 PRK14896 ksgA 16S ribosomal RN 99.2 1.5E-10 3.3E-15 89.4 10.1 91 59-167 14-104 (258)
84 PF13649 Methyltransf_25: Meth 99.2 1.1E-10 2.3E-15 77.5 8.0 76 78-168 1-82 (101)
85 PF10672 Methyltrans_SAM: S-ad 99.2 3E-10 6.6E-15 88.5 11.1 125 25-169 84-210 (286)
86 PRK13942 protein-L-isoaspartat 99.2 3E-10 6.5E-15 85.3 10.8 92 59-164 61-155 (212)
87 PLN02233 ubiquinone biosynthes 99.2 4.9E-10 1.1E-14 86.8 12.2 96 73-179 72-171 (261)
88 TIGR01177 conserved hypothetic 99.2 2E-10 4.3E-15 91.8 10.2 93 60-166 168-260 (329)
89 PRK08287 cobalt-precorrin-6Y C 99.2 3.2E-10 6.9E-15 83.5 10.5 77 71-163 28-106 (187)
90 KOG1271 Methyltransferases [Ge 99.2 1.9E-10 4.2E-15 82.7 8.7 98 48-159 35-141 (227)
91 PRK15451 tRNA cmo(5)U34 methyl 99.2 4.8E-10 1E-14 86.1 11.4 91 74-179 56-153 (247)
92 COG2226 UbiE Methylase involve 99.2 2.5E-10 5.5E-15 86.6 9.5 89 74-176 51-142 (238)
93 KOG1499 Protein arginine N-met 99.2 1.6E-10 3.4E-15 90.9 8.4 100 65-178 51-151 (346)
94 PRK08317 hypothetical protein; 99.2 6.9E-10 1.5E-14 84.1 11.7 108 57-179 2-113 (241)
95 PRK00274 ksgA 16S ribosomal RN 99.2 1.7E-10 3.8E-15 89.8 8.6 89 61-166 29-117 (272)
96 PHA03411 putative methyltransf 99.2 1.8E-10 3.9E-15 88.8 8.3 94 51-168 45-140 (279)
97 PRK00312 pcm protein-L-isoaspa 99.1 6.1E-10 1.3E-14 83.6 11.0 89 62-164 66-154 (212)
98 PF01209 Ubie_methyltran: ubiE 99.1 6E-10 1.3E-14 84.8 11.0 103 54-176 33-139 (233)
99 TIGR01983 UbiG ubiquinone bios 99.1 4.6E-10 1E-14 84.7 10.4 93 73-178 44-137 (224)
100 PRK05785 hypothetical protein; 99.1 5.2E-10 1.1E-14 84.8 10.6 83 74-178 51-135 (226)
101 PTZ00338 dimethyladenosine tra 99.1 3.2E-10 7E-15 89.0 9.6 93 61-168 23-115 (294)
102 PF13489 Methyltransf_23: Meth 99.1 2E-10 4.2E-15 82.0 7.5 83 73-179 21-104 (161)
103 smart00828 PKS_MT Methyltransf 99.1 4.8E-10 1E-14 84.7 9.8 90 76-179 1-93 (224)
104 PF03602 Cons_hypoth95: Conser 99.1 1E-10 2.2E-15 85.9 5.8 114 53-177 19-138 (183)
105 PRK11873 arsM arsenite S-adeno 99.1 8.1E-10 1.7E-14 86.0 11.1 94 72-179 75-172 (272)
106 PRK11705 cyclopropane fatty ac 99.1 7.8E-10 1.7E-14 90.0 10.9 84 64-167 157-241 (383)
107 PRK00377 cbiT cobalt-precorrin 99.1 3E-09 6.5E-14 79.1 12.5 81 70-162 36-119 (198)
108 PRK00216 ubiE ubiquinone/menaq 99.1 2E-09 4.4E-14 81.6 11.6 92 74-178 51-146 (239)
109 PRK00121 trmB tRNA (guanine-N( 99.1 8.6E-10 1.9E-14 82.3 9.1 79 74-163 40-120 (202)
110 PF01135 PCMT: Protein-L-isoas 99.1 1.9E-10 4.1E-15 86.1 5.1 118 18-164 31-151 (209)
111 TIGR00740 methyltransferase, p 99.1 1.8E-09 3.9E-14 82.5 10.6 79 74-167 53-135 (239)
112 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.6E-09 3.5E-14 86.5 10.2 88 74-178 113-203 (340)
113 TIGR02072 BioC biotin biosynth 99.0 1.4E-09 3.1E-14 82.4 9.4 87 74-178 34-123 (240)
114 KOG1500 Protein arginine N-met 99.0 1.2E-09 2.7E-14 85.5 8.2 95 66-175 169-264 (517)
115 PRK04148 hypothetical protein; 99.0 3.7E-09 8E-14 73.2 8.7 83 61-163 3-86 (134)
116 KOG3420 Predicted RNA methylas 99.0 1.9E-09 4.1E-14 74.9 7.2 87 66-167 40-127 (185)
117 TIGR03840 TMPT_Se_Te thiopurin 99.0 4.8E-09 1E-13 78.9 9.9 99 58-166 19-125 (213)
118 COG4106 Tam Trans-aconitate me 99.0 1.2E-09 2.7E-14 80.6 6.3 87 74-180 30-119 (257)
119 PLN02336 phosphoethanolamine N 99.0 3.6E-09 7.8E-14 88.5 10.0 82 73-168 36-117 (475)
120 PRK13943 protein-L-isoaspartat 99.0 5.2E-09 1.1E-13 83.1 10.1 88 62-163 68-158 (322)
121 PRK07402 precorrin-6B methylas 99.0 1.1E-08 2.5E-13 75.8 11.2 56 65-120 31-88 (196)
122 TIGR00755 ksgA dimethyladenosi 99.0 4.5E-09 9.8E-14 81.0 9.2 90 59-166 14-106 (253)
123 COG4976 Predicted methyltransf 98.9 5E-10 1.1E-14 83.3 3.2 83 75-175 126-210 (287)
124 PF08003 Methyltransf_9: Prote 98.9 1.2E-08 2.6E-13 79.4 11.0 94 72-179 113-208 (315)
125 PLN02781 Probable caffeoyl-CoA 98.9 4.4E-09 9.4E-14 80.2 8.2 80 74-161 68-151 (234)
126 PRK04338 N(2),N(2)-dimethylgua 98.9 1.1E-08 2.3E-13 83.2 10.8 74 75-162 58-133 (382)
127 PF07021 MetW: Methionine bios 98.9 4.3E-09 9.4E-14 76.8 7.2 83 74-175 13-97 (193)
128 PF05971 Methyltransf_10: Prot 98.9 5.3E-09 1.2E-13 81.7 8.1 88 75-170 103-193 (299)
129 KOG1541 Predicted protein carb 98.9 6.3E-09 1.4E-13 77.1 7.9 73 74-164 50-122 (270)
130 TIGR02716 C20_methyl_CrtF C-20 98.9 2.5E-08 5.5E-13 78.9 11.9 100 64-179 139-243 (306)
131 COG0742 N6-adenine-specific me 98.9 2.1E-08 4.5E-13 73.1 10.3 101 54-166 21-126 (187)
132 COG2242 CobL Precorrin-6B meth 98.9 2.1E-08 4.6E-13 72.8 10.1 51 70-120 30-82 (187)
133 TIGR02081 metW methionine bios 98.9 1.2E-08 2.5E-13 75.6 9.1 85 74-177 13-99 (194)
134 PRK04266 fibrillarin; Provisio 98.9 2.6E-08 5.7E-13 75.5 10.9 49 70-118 68-118 (226)
135 smart00138 MeTrc Methyltransfe 98.9 1.4E-08 3.1E-13 78.8 9.7 43 74-116 99-152 (264)
136 PRK06922 hypothetical protein; 98.9 5.6E-09 1.2E-13 88.9 7.7 80 73-165 417-498 (677)
137 PLN03075 nicotianamine synthas 98.9 3.1E-08 6.8E-13 77.4 11.0 93 74-179 123-222 (296)
138 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.7E-08 3.6E-13 74.9 8.9 79 74-163 16-96 (194)
139 PRK14902 16S rRNA methyltransf 98.8 2.3E-08 4.9E-13 83.1 10.1 90 59-165 239-331 (444)
140 KOG3191 Predicted N6-DNA-methy 98.8 1.3E-08 2.8E-13 73.3 7.3 78 75-168 44-124 (209)
141 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 5.4E-08 1.2E-12 73.0 11.0 88 74-177 39-130 (223)
142 TIGR00446 nop2p NOL1/NOP2/sun 98.8 2.9E-08 6.2E-13 77.1 9.5 79 74-166 71-152 (264)
143 PF02475 Met_10: Met-10+ like- 98.8 1.6E-08 3.4E-13 75.1 7.6 80 73-166 100-181 (200)
144 PRK10901 16S rRNA methyltransf 98.8 1.7E-08 3.7E-13 83.4 8.6 80 73-165 243-324 (427)
145 PRK13255 thiopurine S-methyltr 98.8 1.4E-08 3.1E-13 76.5 7.4 53 60-113 24-76 (218)
146 PF01170 UPF0020: Putative RNA 98.8 1.2E-08 2.6E-13 74.7 6.7 94 60-166 14-118 (179)
147 PF09445 Methyltransf_15: RNA 98.8 1.1E-08 2.4E-13 73.3 5.9 78 77-164 2-79 (163)
148 PRK14903 16S rRNA methyltransf 98.8 3.8E-08 8.3E-13 81.3 9.5 81 73-166 236-319 (431)
149 KOG2920 Predicted methyltransf 98.8 1.4E-09 3.1E-14 83.4 1.0 60 51-110 90-153 (282)
150 PRK14904 16S rRNA methyltransf 98.8 8.2E-08 1.8E-12 79.8 11.4 92 55-164 234-328 (445)
151 PRK04457 spermidine synthase; 98.8 9.3E-08 2E-12 74.1 10.7 76 74-161 66-143 (262)
152 PF01596 Methyltransf_3: O-met 98.8 1.7E-08 3.7E-13 75.3 6.4 82 73-162 44-129 (205)
153 TIGR00478 tly hemolysin TlyA f 98.8 2.4E-08 5.2E-13 75.6 6.9 58 54-111 55-113 (228)
154 cd02440 AdoMet_MTases S-adenos 98.8 7.8E-08 1.7E-12 62.4 8.4 77 77-166 1-78 (107)
155 PRK14901 16S rRNA methyltransf 98.8 5.1E-08 1.1E-12 80.7 9.2 82 73-164 251-335 (434)
156 KOG3010 Methyltransferase [Gen 98.7 7.9E-09 1.7E-13 77.5 3.3 89 77-178 36-124 (261)
157 PRK11088 rrmA 23S rRNA methylt 98.7 9.5E-08 2.1E-12 74.4 9.0 55 60-115 72-131 (272)
158 TIGR00563 rsmB ribosomal RNA s 98.7 7.6E-08 1.6E-12 79.6 8.8 60 57-120 225-286 (426)
159 PRK11783 rlmL 23S rRNA m(2)G24 98.7 4.5E-07 9.8E-12 79.3 13.9 98 58-166 173-315 (702)
160 PF05185 PRMT5: PRMT5 arginine 98.7 2.8E-07 6.1E-12 76.4 11.9 89 74-176 186-280 (448)
161 TIGR00308 TRM1 tRNA(guanine-26 98.7 2.2E-07 4.8E-12 75.3 10.9 75 75-162 45-122 (374)
162 PRK14121 tRNA (guanine-N(7)-)- 98.7 1.4E-07 3E-12 76.5 9.5 81 74-166 122-204 (390)
163 TIGR03438 probable methyltrans 98.7 1.9E-07 4E-12 73.9 10.1 46 74-119 63-111 (301)
164 COG4122 Predicted O-methyltran 98.7 1.9E-07 4.2E-12 70.0 9.5 92 57-161 45-139 (219)
165 PLN02476 O-methyltransferase 98.7 1.4E-07 2.9E-12 73.4 9.0 48 74-121 118-168 (278)
166 PRK11188 rrmJ 23S rRNA methylt 98.7 3E-07 6.4E-12 69.0 10.2 76 73-166 50-129 (209)
167 COG0030 KsgA Dimethyladenosine 98.6 2.4E-07 5.3E-12 71.0 9.3 89 62-167 18-108 (259)
168 TIGR00438 rrmJ cell division p 98.6 5.5E-07 1.2E-11 66.3 10.0 84 61-162 19-106 (188)
169 KOG4300 Predicted methyltransf 98.6 3.1E-07 6.7E-12 67.6 7.2 89 76-176 78-168 (252)
170 COG0116 Predicted N6-adenine-s 98.5 6.4E-06 1.4E-10 66.3 14.4 94 60-166 177-311 (381)
171 COG1041 Predicted DNA modifica 98.5 4.5E-07 9.8E-12 71.9 7.8 94 60-166 183-276 (347)
172 PTZ00146 fibrillarin; Provisio 98.5 1.7E-06 3.7E-11 67.6 10.8 63 53-115 107-176 (293)
173 PRK00811 spermidine synthase; 98.5 5.3E-07 1.1E-11 70.7 7.7 80 74-161 76-157 (283)
174 PRK03612 spermidine synthase; 98.5 4.4E-07 9.6E-12 76.8 7.0 84 74-163 297-382 (521)
175 COG2520 Predicted methyltransf 98.5 6.2E-07 1.3E-11 71.4 7.4 79 74-165 188-267 (341)
176 PLN02589 caffeoyl-CoA O-methyl 98.5 6.5E-07 1.4E-11 68.6 7.3 48 74-121 79-129 (247)
177 TIGR02987 met_A_Alw26 type II 98.4 1.1E-06 2.3E-11 74.7 8.1 84 74-166 31-124 (524)
178 KOG0820 Ribosomal RNA adenine 98.4 3.4E-06 7.5E-11 64.6 9.2 99 50-164 35-133 (315)
179 TIGR00417 speE spermidine synt 98.4 2.3E-06 5E-11 66.6 8.6 81 74-163 72-154 (270)
180 PF00398 RrnaAD: Ribosomal RNA 98.4 2.7E-06 5.8E-11 66.0 8.9 102 51-166 8-109 (262)
181 COG2519 GCD14 tRNA(1-methylade 98.4 6.7E-06 1.5E-10 62.5 10.7 52 69-120 89-143 (256)
182 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.4E-07 5.2E-12 73.4 3.1 104 51-166 25-137 (311)
183 PF08704 GCD14: tRNA methyltra 98.4 3.3E-06 7.2E-11 64.7 9.2 87 67-163 33-122 (247)
184 PF05219 DREV: DREV methyltran 98.3 2.3E-06 5E-11 65.3 7.7 83 74-180 94-178 (265)
185 PRK01581 speE spermidine synth 98.3 1.5E-06 3.3E-11 69.7 6.7 83 74-162 150-234 (374)
186 PRK13256 thiopurine S-methyltr 98.3 6.4E-06 1.4E-10 62.3 9.7 56 58-114 28-83 (226)
187 TIGR01444 fkbM_fam methyltrans 98.3 3.8E-06 8.3E-11 58.8 7.4 44 77-120 1-46 (143)
188 PF00891 Methyltransf_2: O-met 98.2 7.1E-06 1.5E-10 62.7 8.6 91 65-179 91-186 (241)
189 COG3963 Phospholipid N-methylt 98.2 6.8E-06 1.5E-10 58.7 7.7 112 51-177 26-143 (194)
190 PLN02366 spermidine synthase 98.2 4.5E-06 9.7E-11 66.1 7.4 80 74-161 91-172 (308)
191 PRK10742 putative methyltransf 98.2 1.2E-05 2.7E-10 61.2 9.3 87 77-167 91-177 (250)
192 COG4076 Predicted RNA methylas 98.2 1.7E-06 3.6E-11 63.0 4.2 46 75-120 33-78 (252)
193 PRK00050 16S rRNA m(4)C1402 me 98.2 1.6E-05 3.5E-10 62.5 9.0 79 72-162 17-98 (296)
194 KOG1540 Ubiquinone biosynthesi 98.1 2.3E-05 4.9E-10 59.7 9.1 83 71-164 97-187 (296)
195 PF02527 GidB: rRNA small subu 98.1 3E-05 6.5E-10 57.0 8.8 72 77-163 51-124 (184)
196 PF05724 TPMT: Thiopurine S-me 98.1 8E-06 1.7E-10 61.6 5.4 106 52-164 16-126 (218)
197 PF13679 Methyltransf_32: Meth 98.0 1.7E-05 3.6E-10 55.8 6.2 48 73-120 24-77 (141)
198 COG3129 Predicted SAM-dependen 98.0 1.7E-05 3.6E-10 59.6 6.3 101 60-168 62-167 (292)
199 PRK11933 yebU rRNA (cytosine-C 98.0 5.6E-05 1.2E-09 63.2 10.1 95 55-164 96-193 (470)
200 COG2521 Predicted archaeal met 98.0 9.7E-06 2.1E-10 60.9 4.4 86 73-168 133-219 (287)
201 KOG2730 Methylase [General fun 97.9 1.1E-05 2.3E-10 60.1 3.8 93 60-164 83-175 (263)
202 PF03291 Pox_MCEL: mRNA cappin 97.9 0.00011 2.3E-09 58.9 9.7 123 54-177 42-169 (331)
203 KOG2899 Predicted methyltransf 97.9 2E-05 4.4E-10 59.5 4.7 49 71-119 55-105 (288)
204 COG0357 GidB Predicted S-adeno 97.9 9E-05 1.9E-09 55.6 8.1 74 75-163 68-144 (215)
205 KOG1661 Protein-L-isoaspartate 97.9 3.4E-05 7.3E-10 57.2 5.7 48 72-119 80-131 (237)
206 PLN02823 spermine synthase 97.9 6.6E-05 1.4E-09 60.2 7.8 79 74-161 103-183 (336)
207 PHA01634 hypothetical protein 97.8 0.00015 3.2E-09 49.6 7.8 48 73-120 27-75 (156)
208 PRK11760 putative 23S rRNA C24 97.8 0.00018 3.9E-09 57.4 9.2 99 57-176 187-292 (357)
209 PF08123 DOT1: Histone methyla 97.8 8.4E-05 1.8E-09 55.5 6.8 93 71-167 39-135 (205)
210 PF01739 CheR: CheR methyltran 97.8 0.00013 2.7E-09 54.2 7.1 99 74-179 31-164 (196)
211 KOG2497 Predicted methyltransf 97.8 1.5E-05 3.2E-10 61.4 2.2 125 48-178 64-188 (262)
212 PF09243 Rsm22: Mitochondrial 97.7 0.00022 4.8E-09 55.7 8.7 47 72-118 31-80 (274)
213 COG1352 CheR Methylase of chem 97.7 0.00019 4E-09 55.8 7.6 100 74-180 96-231 (268)
214 PF06080 DUF938: Protein of un 97.7 0.00045 9.7E-09 51.3 8.7 86 77-167 28-115 (204)
215 KOG2361 Predicted methyltransf 97.7 8.8E-05 1.9E-09 56.1 4.9 77 77-164 74-154 (264)
216 PF02390 Methyltransf_4: Putat 97.6 0.00053 1.1E-08 50.9 8.7 76 77-163 20-97 (195)
217 PF05891 Methyltransf_PK: AdoM 97.6 0.00036 7.7E-09 52.2 7.3 88 74-176 55-144 (218)
218 KOG1501 Arginine N-methyltrans 97.6 0.00016 3.4E-09 59.1 5.5 47 76-122 68-115 (636)
219 KOG2078 tRNA modification enzy 97.6 0.00013 2.9E-09 59.2 5.0 69 50-121 226-296 (495)
220 KOG3987 Uncharacterized conser 97.5 2.8E-05 6E-10 57.6 0.8 104 51-177 87-193 (288)
221 KOG1663 O-methyltransferase [S 97.5 0.00058 1.3E-08 51.3 7.6 82 73-162 72-157 (237)
222 PRK10611 chemotaxis methyltran 97.5 0.00011 2.3E-09 57.7 3.9 42 75-116 116-167 (287)
223 COG0293 FtsJ 23S rRNA methylas 97.3 0.0024 5.2E-08 47.5 8.8 87 57-161 28-118 (205)
224 COG1189 Predicted rRNA methyla 97.3 0.0021 4.6E-08 48.7 8.2 56 53-108 58-114 (245)
225 KOG2940 Predicted methyltransf 97.3 0.00056 1.2E-08 51.6 5.0 88 75-178 73-162 (325)
226 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0007 1.5E-08 52.9 5.8 41 77-117 2-43 (275)
227 PF01555 N6_N4_Mtase: DNA meth 97.2 0.00074 1.6E-08 50.5 5.4 58 56-114 174-231 (231)
228 COG4262 Predicted spermidine s 97.2 0.007 1.5E-07 48.8 10.9 82 74-161 289-372 (508)
229 PRK11524 putative methyltransf 97.2 0.0015 3.2E-08 51.3 7.1 59 60-119 195-253 (284)
230 PF01861 DUF43: Protein of unk 97.2 0.0051 1.1E-07 46.8 9.6 101 52-167 23-125 (243)
231 PRK00536 speE spermidine synth 97.2 0.0036 7.9E-08 48.5 8.9 76 74-162 72-147 (262)
232 COG0144 Sun tRNA and rRNA cyto 97.2 0.0045 9.8E-08 50.2 9.8 81 73-164 155-239 (355)
233 PF12147 Methyltransf_20: Puta 97.1 0.0082 1.8E-07 47.0 10.4 83 74-166 135-221 (311)
234 KOG2915 tRNA(1-methyladenosine 97.1 0.0096 2.1E-07 46.1 10.1 83 70-163 101-186 (314)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0031 6.7E-08 49.5 7.6 95 55-164 69-166 (283)
236 PF01728 FtsJ: FtsJ-like methy 97.1 0.0013 2.7E-08 48.0 5.1 51 57-107 4-59 (181)
237 PF01564 Spermine_synth: Sperm 97.1 0.0016 3.4E-08 50.2 5.8 79 74-161 76-157 (246)
238 PRK13699 putative methylase; P 97.0 0.0033 7.2E-08 47.8 7.3 59 60-119 150-208 (227)
239 COG0220 Predicted S-adenosylme 97.0 0.0031 6.8E-08 47.8 7.1 45 76-120 50-96 (227)
240 KOG2671 Putative RNA methylase 97.0 0.00079 1.7E-08 53.5 3.9 84 71-165 205-295 (421)
241 COG0421 SpeE Spermidine syntha 97.0 0.0041 8.8E-08 48.8 7.8 78 76-162 78-157 (282)
242 PF04816 DUF633: Family of unk 96.9 0.0044 9.4E-08 46.4 7.1 44 78-121 1-46 (205)
243 COG0286 HsdM Type I restrictio 96.9 0.0029 6.3E-08 53.4 6.5 81 74-165 186-275 (489)
244 KOG1227 Putative methyltransfe 96.9 0.00065 1.4E-08 53.0 2.4 49 74-122 194-244 (351)
245 KOG1975 mRNA cap methyltransfe 96.9 0.0074 1.6E-07 47.8 8.0 104 55-166 104-208 (389)
246 COG1867 TRM1 N2,N2-dimethylgua 96.8 0.0041 8.8E-08 50.0 6.5 46 75-120 53-100 (380)
247 PF00145 DNA_methylase: C-5 cy 96.7 0.0031 6.7E-08 49.9 5.2 71 77-166 2-73 (335)
248 PF11599 AviRa: RRNA methyltra 96.6 0.0067 1.5E-07 45.4 5.9 61 58-119 36-100 (246)
249 KOG2912 Predicted DNA methylas 96.6 0.0062 1.3E-07 48.1 5.7 84 78-167 106-191 (419)
250 COG2384 Predicted SAM-dependen 96.5 0.029 6.2E-07 42.2 8.7 48 74-121 16-65 (226)
251 TIGR00006 S-adenosyl-methyltra 96.5 0.035 7.6E-07 44.0 9.5 90 61-161 7-99 (305)
252 PF07091 FmrO: Ribosomal RNA m 96.3 0.074 1.6E-06 40.8 9.9 47 74-120 105-153 (251)
253 PF02005 TRM: N2,N2-dimethylgu 96.2 0.0066 1.4E-07 49.6 4.1 78 74-162 49-129 (377)
254 PRK01544 bifunctional N5-gluta 96.1 0.028 6E-07 47.8 7.7 47 74-120 347-395 (506)
255 PF07757 AdoMet_MTase: Predict 96.1 0.012 2.5E-07 39.2 4.2 32 74-105 58-89 (112)
256 COG0500 SmtA SAM-dependent met 96.0 0.095 2.1E-06 35.5 9.0 38 78-116 52-92 (257)
257 KOG2651 rRNA adenine N-6-methy 95.9 0.025 5.3E-07 45.9 5.9 54 60-113 139-193 (476)
258 TIGR00675 dcm DNA-methyltransf 95.8 0.016 3.4E-07 46.3 4.5 40 78-117 1-41 (315)
259 PLN02232 ubiquinone biosynthes 95.7 0.048 1E-06 39.0 6.5 69 100-179 1-70 (160)
260 KOG1201 Hydroxysteroid 17-beta 95.7 0.12 2.6E-06 40.6 9.0 84 71-163 34-123 (300)
261 COG0270 Dcm Site-specific DNA 95.7 0.034 7.4E-07 44.6 6.1 43 75-117 3-46 (328)
262 TIGR03439 methyl_EasF probable 95.7 0.029 6.4E-07 44.8 5.6 44 74-117 76-125 (319)
263 PF03141 Methyltransf_29: Puta 95.6 0.017 3.7E-07 48.3 4.3 62 52-113 91-159 (506)
264 PF02086 MethyltransfD12: D12 95.5 0.021 4.7E-07 43.8 4.2 53 61-113 7-59 (260)
265 KOG0024 Sorbitol dehydrogenase 95.3 0.078 1.7E-06 42.2 6.7 46 69-114 164-212 (354)
266 PF04445 SAM_MT: Putative SAM- 95.1 0.022 4.8E-07 43.3 3.1 85 76-166 77-163 (234)
267 KOG4058 Uncharacterized conser 95.0 0.074 1.6E-06 37.7 5.2 60 60-120 59-119 (199)
268 COG1064 AdhP Zn-dependent alco 95.0 0.11 2.5E-06 41.7 7.0 74 71-163 163-238 (339)
269 PF03059 NAS: Nicotianamine sy 95.0 0.3 6.5E-06 38.2 9.1 79 75-166 121-204 (276)
270 COG1568 Predicted methyltransf 94.9 0.15 3.2E-06 39.9 7.0 79 73-164 151-231 (354)
271 KOG1709 Guanidinoacetate methy 94.8 0.16 3.4E-06 38.3 6.6 75 73-160 100-175 (271)
272 COG1565 Uncharacterized conser 94.6 0.13 2.8E-06 41.6 6.5 60 60-119 60-132 (370)
273 PRK08339 short chain dehydroge 94.6 0.5 1.1E-05 36.3 9.6 84 73-163 6-94 (263)
274 PF02737 3HCDH_N: 3-hydroxyacy 94.5 0.098 2.1E-06 38.2 5.2 42 77-118 1-44 (180)
275 PRK10458 DNA cytosine methylas 94.4 0.28 6.1E-06 41.3 8.3 42 75-116 88-130 (467)
276 PF01269 Fibrillarin: Fibrilla 94.3 0.69 1.5E-05 35.0 9.2 62 52-113 47-115 (229)
277 PRK07102 short chain dehydroge 94.3 0.53 1.2E-05 35.5 9.0 79 76-162 2-84 (243)
278 PRK05867 short chain dehydroge 94.2 0.55 1.2E-05 35.7 9.1 84 73-164 7-96 (253)
279 PRK06125 short chain dehydroge 94.2 0.86 1.9E-05 34.7 10.1 83 74-164 6-91 (259)
280 PF03686 UPF0146: Uncharacteri 94.2 0.1 2.3E-06 35.8 4.3 44 61-107 3-47 (127)
281 COG1748 LYS9 Saccharopine dehy 94.1 0.37 8.1E-06 39.5 8.1 76 76-166 2-80 (389)
282 PRK09424 pntA NAD(P) transhydr 94.0 0.11 2.3E-06 44.3 4.9 42 73-114 163-206 (509)
283 PF05148 Methyltransf_8: Hypot 94.0 0.13 2.9E-06 38.5 4.9 48 55-106 54-103 (219)
284 PRK08862 short chain dehydroge 93.9 0.57 1.2E-05 35.3 8.5 81 74-162 4-91 (227)
285 PRK07523 gluconate 5-dehydroge 93.7 0.75 1.6E-05 34.9 8.9 83 73-164 8-97 (255)
286 PRK06139 short chain dehydroge 93.7 0.85 1.8E-05 36.6 9.5 83 74-164 6-94 (330)
287 PRK06172 short chain dehydroge 93.6 0.95 2.1E-05 34.3 9.3 82 74-164 6-94 (253)
288 COG1063 Tdh Threonine dehydrog 93.5 0.21 4.5E-06 40.4 5.8 42 74-115 168-212 (350)
289 PRK07062 short chain dehydroge 93.5 0.99 2.1E-05 34.5 9.3 86 73-164 6-97 (265)
290 PRK07035 short chain dehydroge 93.3 1.1 2.5E-05 33.8 9.4 83 73-163 6-94 (252)
291 PRK05876 short chain dehydroge 93.3 1 2.2E-05 34.9 9.2 84 73-164 4-93 (275)
292 PRK06124 gluconate 5-dehydroge 93.2 0.7 1.5E-05 35.1 8.1 83 73-164 9-98 (256)
293 PF02636 Methyltransf_28: Puta 93.2 0.2 4.3E-06 38.6 5.0 44 75-118 19-72 (252)
294 PRK06949 short chain dehydroge 93.2 1.4 3.1E-05 33.3 9.8 83 73-164 7-96 (258)
295 COG5459 Predicted rRNA methyla 93.1 0.15 3.2E-06 41.2 4.2 85 71-167 110-198 (484)
296 PRK05854 short chain dehydroge 93.1 1.6 3.5E-05 34.5 10.3 86 73-164 12-103 (313)
297 KOG4589 Cell division protein 93.1 0.13 2.8E-06 37.9 3.6 33 73-105 68-103 (232)
298 PRK07097 gluconate 5-dehydroge 93.1 1 2.2E-05 34.5 8.8 83 74-164 9-97 (265)
299 PF11968 DUF3321: Putative met 93.1 0.34 7.4E-06 36.4 5.8 86 56-169 29-120 (219)
300 PRK07063 short chain dehydroge 93.1 1.5 3.2E-05 33.4 9.7 85 74-164 6-96 (260)
301 COG0863 DNA modification methy 93.0 0.57 1.2E-05 36.6 7.4 60 60-120 209-268 (302)
302 KOG1253 tRNA methyltransferase 93.0 0.063 1.4E-06 44.9 2.0 47 74-120 109-158 (525)
303 PRK07890 short chain dehydroge 93.0 1.7 3.7E-05 32.8 9.9 82 74-164 4-92 (258)
304 PRK08085 gluconate 5-dehydroge 92.8 1.2 2.6E-05 33.8 8.8 83 74-164 8-96 (254)
305 PRK08589 short chain dehydroge 92.8 1.3 2.9E-05 34.1 9.1 82 74-164 5-92 (272)
306 KOG1122 tRNA and rRNA cytosine 92.7 0.29 6.4E-06 40.3 5.4 79 73-163 240-321 (460)
307 PRK07478 short chain dehydroge 92.6 1.7 3.6E-05 32.9 9.4 83 74-164 5-93 (254)
308 PRK08213 gluconate 5-dehydroge 92.4 1.8 3.8E-05 32.9 9.4 82 74-164 11-99 (259)
309 PRK09242 tropinone reductase; 92.4 2 4.3E-05 32.6 9.6 85 74-164 8-98 (257)
310 PF07942 N2227: N2227-like pro 92.4 0.4 8.7E-06 37.4 5.6 40 74-113 56-95 (270)
311 PRK12826 3-ketoacyl-(acyl-carr 92.3 1.4 3.1E-05 33.0 8.7 84 74-166 5-95 (251)
312 PRK08267 short chain dehydroge 92.3 1.2 2.6E-05 33.9 8.3 78 76-164 2-87 (260)
313 PRK06720 hypothetical protein; 92.3 2.7 5.9E-05 30.3 9.6 85 74-166 15-105 (169)
314 PRK08217 fabG 3-ketoacyl-(acyl 92.2 1.7 3.6E-05 32.7 8.8 82 74-164 4-92 (253)
315 PRK07533 enoyl-(acyl carrier p 92.1 1.4 3E-05 33.7 8.5 83 73-164 8-98 (258)
316 PRK07576 short chain dehydroge 92.1 2 4.4E-05 32.9 9.3 81 73-162 7-94 (264)
317 TIGR02356 adenyl_thiF thiazole 92.0 1.1 2.3E-05 33.4 7.4 32 74-105 20-54 (202)
318 PRK07791 short chain dehydroge 92.0 1.8 4E-05 33.7 9.1 85 73-165 4-103 (286)
319 COG0275 Predicted S-adenosylme 91.9 2.1 4.5E-05 34.0 9.0 71 62-140 11-84 (314)
320 PRK06194 hypothetical protein; 91.9 1.8 4E-05 33.4 9.0 82 74-164 5-93 (287)
321 PRK05866 short chain dehydroge 91.9 2.5 5.4E-05 33.1 9.8 83 73-164 38-127 (293)
322 PF13578 Methyltransf_24: Meth 91.9 0.096 2.1E-06 34.4 1.5 71 79-162 1-77 (106)
323 PRK08340 glucose-1-dehydrogena 91.9 1.5 3.3E-05 33.3 8.4 78 77-163 2-85 (259)
324 TIGR03206 benzo_BadH 2-hydroxy 91.8 2.1 4.5E-05 32.2 9.0 82 74-164 2-90 (250)
325 PRK07814 short chain dehydroge 91.8 2.5 5.3E-05 32.3 9.5 82 73-163 8-96 (263)
326 PRK08643 acetoin reductase; Va 91.7 1.9 4E-05 32.7 8.7 81 75-164 2-89 (256)
327 PRK05872 short chain dehydroge 91.6 1.7 3.8E-05 34.0 8.6 84 73-165 7-96 (296)
328 PF00107 ADH_zinc_N: Zinc-bind 91.6 0.43 9.3E-06 32.3 4.6 64 84-162 1-66 (130)
329 PRK07109 short chain dehydroge 91.6 2.4 5.3E-05 33.9 9.5 84 73-164 6-95 (334)
330 PRK05786 fabG 3-ketoacyl-(acyl 91.5 4 8.7E-05 30.4 10.3 82 74-165 4-92 (238)
331 PRK07904 short chain dehydroge 91.5 2 4.3E-05 32.8 8.7 83 74-164 7-97 (253)
332 PRK07666 fabG 3-ketoacyl-(acyl 91.5 2 4.4E-05 32.1 8.6 81 74-163 6-93 (239)
333 PRK12481 2-deoxy-D-gluconate 3 91.4 2.4 5.1E-05 32.3 9.0 83 73-165 6-94 (251)
334 PRK08303 short chain dehydroge 91.4 2.5 5.5E-05 33.4 9.4 82 73-162 6-103 (305)
335 PRK12548 shikimate 5-dehydroge 91.4 2.7 5.8E-05 33.1 9.4 44 62-106 113-160 (289)
336 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.4 0.22 4.7E-06 38.6 3.2 45 72-116 54-99 (256)
337 PRK06935 2-deoxy-D-gluconate 3 91.3 2.9 6.2E-05 31.8 9.4 83 73-164 13-101 (258)
338 KOG3178 Hydroxyindole-O-methyl 91.3 0.69 1.5E-05 37.2 6.0 42 76-117 179-220 (342)
339 PRK07677 short chain dehydroge 91.3 2.3 5E-05 32.2 8.9 81 75-163 1-87 (252)
340 COG0300 DltE Short-chain dehyd 91.3 3.1 6.7E-05 32.5 9.4 83 74-163 5-93 (265)
341 KOG3045 Predicted RNA methylas 91.3 0.6 1.3E-05 36.3 5.3 46 55-106 162-209 (325)
342 PRK07792 fabG 3-ketoacyl-(acyl 91.2 2.1 4.5E-05 33.8 8.7 84 73-164 10-99 (306)
343 PRK08277 D-mannonate oxidoredu 91.1 2.8 6.2E-05 32.2 9.3 82 74-163 9-96 (278)
344 PRK06113 7-alpha-hydroxysteroi 91.0 3.1 6.8E-05 31.5 9.4 82 74-164 10-98 (255)
345 KOG0725 Reductases with broad 91.0 4.5 9.8E-05 31.5 10.2 87 73-164 6-99 (270)
346 PF03721 UDPG_MGDP_dh_N: UDP-g 90.9 0.43 9.3E-06 35.1 4.2 37 77-113 2-40 (185)
347 PF10237 N6-adenineMlase: Prob 90.8 1.5 3.1E-05 31.6 6.8 88 57-166 10-98 (162)
348 PRK09072 short chain dehydroge 90.8 2.2 4.8E-05 32.5 8.4 82 74-164 4-90 (263)
349 PRK09291 short chain dehydroge 90.8 3.4 7.4E-05 31.2 9.3 76 76-163 3-82 (257)
350 cd01487 E1_ThiF_like E1_ThiF_l 90.7 2.8 6E-05 30.4 8.3 30 77-106 1-33 (174)
351 PRK07831 short chain dehydroge 90.7 4.3 9.3E-05 30.9 9.9 86 73-164 15-107 (262)
352 PRK08265 short chain dehydroge 90.7 2.2 4.7E-05 32.6 8.2 81 74-165 5-91 (261)
353 KOG3115 Methyltransferase-like 90.7 0.8 1.7E-05 34.3 5.3 46 75-120 61-108 (249)
354 PRK07688 thiamine/molybdopteri 90.5 1.9 4.1E-05 34.8 7.9 33 74-106 23-58 (339)
355 PRK07326 short chain dehydroge 90.3 3.4 7.3E-05 30.8 8.9 80 74-163 5-91 (237)
356 PF01795 Methyltransf_5: MraW 90.3 0.37 8E-06 38.4 3.6 77 73-160 19-99 (310)
357 PRK08416 7-alpha-hydroxysteroi 90.2 3.5 7.6E-05 31.4 9.0 83 73-162 6-95 (260)
358 PRK07453 protochlorophyllide o 90.1 3.6 7.9E-05 32.5 9.3 82 74-164 5-93 (322)
359 PRK07774 short chain dehydroge 90.1 4.1 8.9E-05 30.6 9.2 83 74-165 5-94 (250)
360 PRK06197 short chain dehydroge 90.1 4.4 9.6E-05 31.7 9.7 85 73-164 14-105 (306)
361 cd01078 NAD_bind_H4MPT_DH NADP 90.0 5.5 0.00012 29.1 9.6 45 72-116 25-72 (194)
362 PRK08226 short chain dehydroge 90.0 3.7 8E-05 31.2 9.0 81 74-164 5-92 (263)
363 COG1004 Ugd Predicted UDP-gluc 90.0 0.54 1.2E-05 38.6 4.4 37 77-113 2-40 (414)
364 PRK06200 2,3-dihydroxy-2,3-dih 90.0 2.5 5.4E-05 32.2 8.0 80 74-164 5-90 (263)
365 TIGR03201 dearomat_had 6-hydro 89.9 1.3 2.8E-05 35.5 6.6 44 71-114 163-208 (349)
366 PRK07231 fabG 3-ketoacyl-(acyl 89.9 3.7 8E-05 30.8 8.8 82 74-164 4-91 (251)
367 PF05050 Methyltransf_21: Meth 89.9 0.93 2E-05 31.8 5.2 41 80-120 1-49 (167)
368 TIGR01963 PHB_DH 3-hydroxybuty 89.9 3.6 7.9E-05 30.9 8.8 80 76-164 2-88 (255)
369 PRK12429 3-hydroxybutyrate deh 89.8 4.9 0.00011 30.2 9.5 81 74-163 3-90 (258)
370 PRK09880 L-idonate 5-dehydroge 89.8 1.3 2.9E-05 35.4 6.6 42 73-114 168-212 (343)
371 PRK09186 flagellin modificatio 89.8 5.5 0.00012 30.0 9.7 82 74-162 3-91 (256)
372 PRK12829 short chain dehydroge 89.8 3.4 7.5E-05 31.3 8.6 81 73-164 9-96 (264)
373 PLN03154 putative allyl alcoho 89.7 4.9 0.00011 32.3 9.8 44 70-113 154-200 (348)
374 TIGR03366 HpnZ_proposed putati 89.7 1.4 2.9E-05 34.2 6.4 42 73-114 119-163 (280)
375 cd08283 FDH_like_1 Glutathione 89.6 1.1 2.4E-05 36.6 6.1 44 72-115 182-228 (386)
376 cd00755 YgdL_like Family of ac 89.6 2.8 6.1E-05 32.0 7.9 33 74-106 10-45 (231)
377 PRK05650 short chain dehydroge 89.6 4.7 0.0001 30.9 9.3 79 77-164 2-87 (270)
378 PRK08251 short chain dehydroge 89.5 5.2 0.00011 30.0 9.4 82 75-163 2-90 (248)
379 PRK07024 short chain dehydroge 89.5 2.7 5.8E-05 32.0 7.8 79 76-164 3-88 (257)
380 TIGR00497 hsdM type I restrict 89.4 1 2.2E-05 38.3 5.9 81 74-164 217-303 (501)
381 COG1255 Uncharacterized protei 89.4 0.71 1.5E-05 31.2 3.8 33 75-107 14-47 (129)
382 TIGR01832 kduD 2-deoxy-D-gluco 89.3 3.8 8.3E-05 30.8 8.5 82 73-165 3-91 (248)
383 PRK07066 3-hydroxybutyryl-CoA 89.3 1.1 2.4E-05 36.0 5.6 42 76-117 8-51 (321)
384 PRK12939 short chain dehydroge 89.3 4.5 9.8E-05 30.3 8.9 81 74-163 6-93 (250)
385 PRK08644 thiamine biosynthesis 89.2 3.7 7.9E-05 30.8 8.2 33 73-105 26-61 (212)
386 PRK06057 short chain dehydroge 89.2 2.3 5E-05 32.3 7.3 78 73-164 5-89 (255)
387 PRK05599 hypothetical protein; 89.1 3.6 7.9E-05 31.1 8.3 81 77-165 2-88 (246)
388 PRK06505 enoyl-(acyl carrier p 89.1 3.5 7.5E-05 31.9 8.3 83 73-164 5-95 (271)
389 PRK06079 enoyl-(acyl carrier p 89.1 2.6 5.6E-05 32.1 7.4 81 73-164 5-93 (252)
390 cd05188 MDR Medium chain reduc 89.1 5.9 0.00013 29.8 9.5 42 73-114 133-176 (271)
391 PRK06181 short chain dehydroge 89.1 5.1 0.00011 30.4 9.1 80 76-164 2-88 (263)
392 cd00401 AdoHcyase S-adenosyl-L 89.0 1.3 2.8E-05 36.8 6.0 41 73-113 200-242 (413)
393 PRK08703 short chain dehydroge 89.0 7.9 0.00017 28.9 10.2 84 73-164 4-97 (239)
394 cd08237 ribitol-5-phosphate_DH 88.9 0.75 1.6E-05 36.8 4.6 42 73-114 162-207 (341)
395 cd00757 ThiF_MoeB_HesA_family 88.9 2.7 5.8E-05 31.8 7.3 33 74-106 20-55 (228)
396 PRK06138 short chain dehydroge 88.8 5.2 0.00011 30.0 9.0 81 74-164 4-91 (252)
397 PLN03209 translocon at the inn 88.8 6.4 0.00014 34.2 10.1 87 71-162 76-167 (576)
398 PRK06196 oxidoreductase; Provi 88.8 3.3 7.2E-05 32.6 8.1 79 73-164 24-109 (315)
399 PRK05875 short chain dehydroge 88.6 6.4 0.00014 30.1 9.5 83 74-163 6-95 (276)
400 PRK13394 3-hydroxybutyrate deh 88.6 4.7 0.0001 30.5 8.6 83 74-165 6-95 (262)
401 PRK07889 enoyl-(acyl carrier p 88.5 1.8 3.9E-05 33.1 6.3 81 73-164 5-95 (256)
402 PRK12823 benD 1,6-dihydroxycyc 88.5 6.6 0.00014 29.7 9.4 81 73-162 6-92 (260)
403 PLN02253 xanthoxin dehydrogena 88.5 5 0.00011 30.8 8.8 80 74-163 17-103 (280)
404 PRK15116 sulfur acceptor prote 88.5 5.1 0.00011 31.3 8.7 34 73-106 28-64 (268)
405 COG1179 Dinucleotide-utilizing 88.4 0.79 1.7E-05 35.2 4.0 39 73-111 28-69 (263)
406 PLN02780 ketoreductase/ oxidor 88.3 7.1 0.00015 31.1 9.7 85 74-164 52-142 (320)
407 PLN02740 Alcohol dehydrogenase 88.3 1.5 3.3E-05 35.7 6.0 44 71-114 195-241 (381)
408 TIGR02822 adh_fam_2 zinc-bindi 88.3 1.6 3.4E-05 34.8 6.0 44 71-114 162-207 (329)
409 PRK06940 short chain dehydroge 88.3 6.3 0.00014 30.4 9.2 80 76-165 3-87 (275)
410 TIGR02818 adh_III_F_hyde S-(hy 88.2 1.6 3.6E-05 35.3 6.1 44 71-114 182-228 (368)
411 PRK06701 short chain dehydroge 88.2 5.8 0.00013 31.0 9.0 84 73-164 44-134 (290)
412 PRK12384 sorbitol-6-phosphate 88.2 5.7 0.00012 30.0 8.9 82 75-163 2-90 (259)
413 PRK07454 short chain dehydroge 88.2 7.3 0.00016 29.1 9.4 82 74-164 5-93 (241)
414 PF05206 TRM13: Methyltransfer 88.1 1.2 2.7E-05 34.5 5.0 42 65-106 9-57 (259)
415 PRK05597 molybdopterin biosynt 88.0 3.6 7.8E-05 33.4 7.9 33 74-106 27-62 (355)
416 PF00106 adh_short: short chai 87.9 3 6.5E-05 29.2 6.7 82 77-166 2-92 (167)
417 TIGR03325 BphB_TodD cis-2,3-di 87.9 3.4 7.5E-05 31.5 7.5 78 74-163 4-88 (262)
418 KOG1209 1-Acyl dihydroxyaceton 87.8 2.4 5.3E-05 32.1 6.2 76 74-162 6-89 (289)
419 PRK07819 3-hydroxybutyryl-CoA 87.6 1.6 3.5E-05 34.3 5.5 43 76-118 6-50 (286)
420 PRK07074 short chain dehydroge 87.6 5.6 0.00012 30.0 8.5 79 75-164 2-87 (257)
421 PRK08690 enoyl-(acyl carrier p 87.6 5.4 0.00012 30.5 8.4 84 73-165 4-95 (261)
422 PRK11730 fadB multifunctional 87.5 1.5 3.2E-05 39.1 5.8 43 76-118 314-358 (715)
423 PRK07067 sorbitol dehydrogenas 87.5 5.6 0.00012 30.1 8.4 79 74-164 5-90 (257)
424 PRK08945 putative oxoacyl-(acy 87.4 10 0.00022 28.5 9.7 83 73-163 10-101 (247)
425 cd08239 THR_DH_like L-threonin 87.4 2.2 4.8E-05 33.8 6.4 43 71-113 160-205 (339)
426 PRK06198 short chain dehydroge 87.4 6.1 0.00013 29.9 8.6 82 73-163 4-93 (260)
427 PRK05565 fabG 3-ketoacyl-(acyl 87.3 5.7 0.00012 29.6 8.3 82 74-164 4-93 (247)
428 PF01488 Shikimate_DH: Shikima 87.2 1.1 2.4E-05 31.0 4.0 75 72-165 9-86 (135)
429 PRK12475 thiamine/molybdopteri 87.1 4.3 9.4E-05 32.8 7.8 33 74-106 23-58 (338)
430 PRK08993 2-deoxy-D-gluconate 3 87.1 7.2 0.00016 29.5 8.8 82 73-164 8-95 (253)
431 PRK07825 short chain dehydroge 87.0 4.1 8.9E-05 31.2 7.5 77 74-163 4-87 (273)
432 PRK07060 short chain dehydroge 87.0 5.5 0.00012 29.7 8.1 76 74-164 8-87 (245)
433 PRK08628 short chain dehydroge 86.9 8.3 0.00018 29.1 9.1 82 73-164 5-93 (258)
434 PRK08159 enoyl-(acyl carrier p 86.7 5.6 0.00012 30.7 8.1 84 72-164 7-98 (272)
435 PRK12743 oxidoreductase; Provi 86.6 10 0.00022 28.7 9.5 81 75-164 2-90 (256)
436 COG4221 Short-chain alcohol de 86.6 7.4 0.00016 30.0 8.3 83 74-166 5-93 (246)
437 PRK08415 enoyl-(acyl carrier p 86.6 7.3 0.00016 30.2 8.7 82 74-164 4-93 (274)
438 KOG1098 Putative SAM-dependent 86.5 1 2.3E-05 39.0 4.1 50 57-106 27-79 (780)
439 PRK06484 short chain dehydroge 86.5 3.6 7.9E-05 34.8 7.5 80 74-164 4-89 (520)
440 PLN02657 3,8-divinyl protochlo 86.4 6.4 0.00014 32.3 8.6 79 74-161 59-143 (390)
441 PRK08324 short chain dehydroge 86.4 6.8 0.00015 34.7 9.3 82 73-164 420-508 (681)
442 KOG1198 Zinc-binding oxidoredu 86.4 5.2 0.00011 32.5 7.9 77 71-162 154-233 (347)
443 PRK06114 short chain dehydroge 86.3 11 0.00023 28.6 9.4 84 73-165 6-97 (254)
444 cd08281 liver_ADH_like1 Zinc-d 86.2 2.4 5.3E-05 34.3 6.1 44 71-114 188-234 (371)
445 PRK05993 short chain dehydroge 86.1 4.8 0.0001 31.0 7.5 74 75-163 4-85 (277)
446 COG0569 TrkA K+ transport syst 86.1 2.9 6.3E-05 31.6 6.1 69 77-161 2-73 (225)
447 PF13561 adh_short_C2: Enoyl-( 85.9 2.9 6.2E-05 31.5 6.0 67 89-164 13-83 (241)
448 PRK08594 enoyl-(acyl carrier p 85.8 5.9 0.00013 30.2 7.8 84 74-164 6-97 (257)
449 PF02254 TrkA_N: TrkA-N domain 85.7 2 4.3E-05 28.4 4.6 63 83-162 4-70 (116)
450 cd08294 leukotriene_B4_DH_like 85.7 7.3 0.00016 30.5 8.4 45 70-114 139-186 (329)
451 PRK07201 short chain dehydroge 85.6 9.2 0.0002 33.4 9.7 82 74-164 370-458 (657)
452 TIGR00518 alaDH alanine dehydr 85.6 2.9 6.3E-05 34.2 6.2 40 74-113 166-207 (370)
453 PRK08328 hypothetical protein; 85.6 6.8 0.00015 29.8 7.8 33 74-106 26-61 (231)
454 PRK05717 oxidoreductase; Valid 85.5 3.6 7.7E-05 31.2 6.4 81 73-165 8-95 (255)
455 COG1889 NOP1 Fibrillarin-like 85.5 13 0.00029 28.0 8.9 61 53-113 51-117 (231)
456 COG1062 AdhC Zn-dependent alco 85.4 2.6 5.5E-05 34.1 5.5 43 72-114 183-228 (366)
457 PRK12828 short chain dehydroge 85.4 11 0.00024 27.8 9.0 79 74-163 6-91 (239)
458 TIGR01289 LPOR light-dependent 85.4 8 0.00017 30.6 8.5 83 75-165 3-92 (314)
459 PRK08278 short chain dehydroge 85.4 9.9 0.00021 29.2 8.9 82 74-164 5-100 (273)
460 PRK08293 3-hydroxybutyryl-CoA 85.4 2.4 5.2E-05 33.2 5.5 42 76-117 4-47 (287)
461 PRK06841 short chain dehydroge 85.2 8.1 0.00017 29.1 8.2 80 74-164 14-99 (255)
462 PRK05600 thiamine biosynthesis 85.1 6.9 0.00015 32.0 8.1 33 73-105 39-74 (370)
463 PRK06484 short chain dehydroge 85.1 4.9 0.00011 34.1 7.6 80 74-164 268-353 (520)
464 PRK06914 short chain dehydroge 85.1 9.3 0.0002 29.3 8.6 83 75-164 3-91 (280)
465 TIGR03451 mycoS_dep_FDH mycoth 85.0 2.9 6.4E-05 33.6 6.0 44 71-114 173-219 (358)
466 PRK05653 fabG 3-ketoacyl-(acyl 85.0 13 0.00027 27.6 9.2 80 74-162 4-90 (246)
467 PRK06035 3-hydroxyacyl-CoA deh 84.9 2.5 5.4E-05 33.1 5.4 42 76-117 4-47 (291)
468 PRK06603 enoyl-(acyl carrier p 84.8 12 0.00027 28.5 9.2 82 74-164 7-96 (260)
469 PRK05855 short chain dehydroge 84.7 17 0.00036 31.0 10.7 84 73-165 313-403 (582)
470 cd01492 Aos1_SUMO Ubiquitin ac 84.7 8.9 0.00019 28.4 8.0 33 74-106 20-55 (197)
471 PRK08762 molybdopterin biosynt 84.4 5.8 0.00013 32.4 7.5 33 73-105 133-168 (376)
472 cd01065 NAD_bind_Shikimate_DH 84.3 11 0.00025 26.1 8.2 43 73-115 17-62 (155)
473 PRK05884 short chain dehydroge 84.2 6 0.00013 29.5 7.0 73 77-162 2-77 (223)
474 PRK08936 glucose-1-dehydrogena 84.2 16 0.00035 27.7 9.6 83 73-163 5-94 (261)
475 PRK13656 trans-2-enoyl-CoA red 84.2 17 0.00037 30.1 9.9 93 62-163 27-140 (398)
476 cd08293 PTGR2 Prostaglandin re 84.1 10 0.00023 30.0 8.8 39 76-114 156-198 (345)
477 PRK11154 fadJ multifunctional 84.1 3 6.6E-05 37.2 6.0 43 76-118 310-355 (708)
478 PRK07984 enoyl-(acyl carrier p 84.1 12 0.00025 28.8 8.7 83 74-165 5-95 (262)
479 PRK07806 short chain dehydroge 84.1 12 0.00026 28.0 8.8 80 74-162 5-92 (248)
480 COG1250 FadB 3-hydroxyacyl-CoA 84.0 3 6.4E-05 33.3 5.4 44 76-119 4-49 (307)
481 TIGR00561 pntA NAD(P) transhyd 84.0 2.3 5.1E-05 36.3 5.1 41 74-114 163-205 (511)
482 TIGR02437 FadB fatty oxidation 84.0 2.6 5.6E-05 37.6 5.6 43 76-118 314-358 (714)
483 PF03435 Saccharop_dh: Sacchar 83.8 5.6 0.00012 32.5 7.2 82 78-177 1-88 (386)
484 cd08254 hydroxyacyl_CoA_DH 6-h 83.7 4.2 9.1E-05 31.9 6.3 43 72-114 163-207 (338)
485 PRK12859 3-ketoacyl-(acyl-carr 83.6 12 0.00025 28.4 8.6 85 73-165 4-107 (256)
486 PRK01438 murD UDP-N-acetylmura 83.6 8.7 0.00019 32.3 8.4 48 73-120 14-64 (480)
487 PRK07832 short chain dehydroge 83.5 14 0.00031 28.2 9.0 80 77-164 2-88 (272)
488 PRK06180 short chain dehydroge 83.4 6.4 0.00014 30.3 7.1 78 75-164 4-88 (277)
489 PRK07775 short chain dehydroge 83.4 15 0.00032 28.2 9.1 82 74-164 9-97 (274)
490 PF04672 Methyltransf_19: S-ad 83.4 5.6 0.00012 31.1 6.5 97 76-179 70-179 (267)
491 TIGR02632 RhaD_aldol-ADH rhamn 83.4 16 0.00034 32.5 10.1 86 73-165 412-504 (676)
492 PRK06997 enoyl-(acyl carrier p 83.4 9.4 0.0002 29.2 7.9 82 74-164 5-94 (260)
493 PRK06101 short chain dehydroge 83.4 8.4 0.00018 28.9 7.6 74 76-162 2-79 (240)
494 PRK06482 short chain dehydroge 83.2 9.8 0.00021 29.1 8.0 76 76-163 3-85 (276)
495 PRK12748 3-ketoacyl-(acyl-carr 83.2 12 0.00025 28.4 8.3 82 74-164 4-105 (256)
496 cd08301 alcohol_DH_plants Plan 82.9 4 8.7E-05 32.9 6.0 43 71-113 184-229 (369)
497 PLN02896 cinnamyl-alcohol dehy 82.8 8.7 0.00019 30.8 7.8 77 74-164 9-89 (353)
498 KOG1205 Predicted dehydrogenas 82.8 13 0.00029 29.3 8.4 85 73-163 10-100 (282)
499 PLN02827 Alcohol dehydrogenase 82.7 4.5 9.7E-05 32.9 6.2 43 71-113 190-235 (378)
500 PRK12935 acetoacetyl-CoA reduc 82.6 18 0.00039 27.0 9.1 83 74-165 5-95 (247)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.92 E-value=1.2e-24 Score=158.52 Aligned_cols=123 Identities=35% Similarity=0.619 Sum_probs=78.4
Q ss_pred CCcCceecchHHHHHHHHhhC------CCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 49 DLTGQLVWPGAMLMNDYLSKN------PDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 49 ~~~g~~~w~~~~~l~~~l~~~------~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..+|.++||++..|++||.++ ....++++|||||||+|+.|+.+++. +.+|++||+++ +++.++.|++.|+
T Consensus 14 ~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 14 DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp ---------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence 367999999999999999984 45668899999999999999999998 67999999988 9999999999986
Q ss_pred CCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 121 SSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
. ....++.+..++|++...... ....+||+|+++||+|+ ...+.+++++...
T Consensus 93 ~----~~~~~v~v~~L~Wg~~~~~~~---~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~l 145 (173)
T PF10294_consen 93 S----LLDGRVSVRPLDWGDELDSDL---LEPHSFDVILASDVLYDEELFEPLVRTLKRL 145 (173)
T ss_dssp -----------EEEE--TTS-HHHHH---HS-SSBSEEEEES--S-GGGHHHHHHHHHHH
T ss_pred c----cccccccCcEEEecCcccccc---cccccCCEEEEecccchHHHHHHHHHHHHHH
Confidence 2 124568899999998532111 13568999999999999 4555666665543
No 2
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.68 E-value=8.1e-16 Score=111.76 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=77.5
Q ss_pred cCCcC-ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC--eEEEecCCHHHHHHHHHHHHHhcCCCC
Q 030274 48 FDLTG-QLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR--EVLLTDHNEEVLKILKKNIEHHTSSEN 124 (180)
Q Consensus 48 ~~~~g-~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~--~V~~~D~~~~~l~~~~~n~~~n~~~~~ 124 (180)
++.|. ..+-+++..|++++... ++.+|||+|||+|.+|+.+++.+. +|+++|+++.+++.+++|++.|+..
T Consensus 8 ~gvFs~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~-- 81 (170)
T PF05175_consen 8 PGVFSPPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE-- 81 (170)
T ss_dssp TTSTTTTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--
T ss_pred CCeeCCCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--
Confidence 56666 33667889999999876 566899999999999999999764 5999999999999999999999732
Q ss_pred CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
++.+...++...- ...+||+|++|||++..
T Consensus 82 -----~v~~~~~d~~~~~--------~~~~fD~Iv~NPP~~~~ 111 (170)
T PF05175_consen 82 -----NVEVVQSDLFEAL--------PDGKFDLIVSNPPFHAG 111 (170)
T ss_dssp -----TEEEEESSTTTTC--------CTTCEEEEEE---SBTT
T ss_pred -----ccccccccccccc--------cccceeEEEEccchhcc
Confidence 2556665555431 24799999999997663
No 3
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=115.45 Aligned_cols=109 Identities=20% Similarity=0.407 Sum_probs=91.1
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPN 126 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~ 126 (180)
++.++...|.+...+++|+..+++..++++|||+|+|+|+.+++.++.| +.|+++|+.+..+..++.|++.|+.
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv----- 127 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV----- 127 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-----
Confidence 4558889999999999999999999999999999999999999999998 5899999999999999999999973
Q ss_pred CCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC-chhhHH
Q 030274 127 SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN-RSLLMT 174 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~-~~~l~~ 174 (180)
.+.+...+... .+..||+|+++|++|.+. ...+++
T Consensus 128 ---~i~~~~~d~~g----------~~~~~Dl~LagDlfy~~~~a~~l~~ 163 (218)
T COG3897 128 ---SILFTHADLIG----------SPPAFDLLLAGDLFYNHTEADRLIP 163 (218)
T ss_pred ---eeEEeeccccC----------CCcceeEEEeeceecCchHHHHHHH
Confidence 24444444332 256899999999999954 444444
No 4
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9.9e-17 Score=112.49 Aligned_cols=123 Identities=27% Similarity=0.447 Sum_probs=94.8
Q ss_pred cCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCc-CChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCC
Q 030274 48 FDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSG-VGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSE 123 (180)
Q Consensus 48 ~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G-~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~ 123 (180)
++.||.+ +||+.+.|+.++.+.+..+.+++|||||.| +|+.|+++|... +.|..||.+++.++..++....|..+.
T Consensus 2 fdntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 2 FDNTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS 81 (201)
T ss_pred cCCCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence 5678877 999999999999999988899999999999 499999999874 799999999999999998888874221
Q ss_pred CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 124 NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
..+ +..+.|......+. .....||+|+++||+|. +.++.|++++...
T Consensus 82 ----~ts--c~vlrw~~~~aqsq---~eq~tFDiIlaADClFfdE~h~sLvdtIk~l 129 (201)
T KOG3201|consen 82 ----LTS--CCVLRWLIWGAQSQ---QEQHTFDIILAADCLFFDEHHESLVDTIKSL 129 (201)
T ss_pred ----cce--ehhhHHHHhhhHHH---HhhCcccEEEeccchhHHHHHHHHHHHHHHH
Confidence 122 23344443222211 23568999999999877 6778888877643
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.5e-15 Score=113.85 Aligned_cols=118 Identities=24% Similarity=0.286 Sum_probs=80.4
Q ss_pred ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEE
Q 030274 24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLL 101 (180)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~ 101 (180)
|-.....|.+..+.+... =..--|.++.|.+.+......... +|||||||||.+++.+++.+ ++|++
T Consensus 71 yi~g~~~f~gl~~~v~~~----------vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a 139 (280)
T COG2890 71 YILGSAEFGGLRFKVDEG----------VLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIA 139 (280)
T ss_pred HhhccCeecceeeeeCCC----------ceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEE
Confidence 334445677766666510 011223456677765422211122 79999999999999999876 49999
Q ss_pred ecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274 102 TDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN 168 (180)
Q Consensus 102 ~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~ 168 (180)
+|+|+.+++.|++|+..|+. .++.....+|... ..++||+|++||||-...
T Consensus 140 ~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~dlf~~---------~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 140 VDISPDALALARENAERNGL-------VRVLVVQSDLFEP---------LRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred EECCHHHHHHHHHHHHHcCC-------ccEEEEeeecccc---------cCCceeEEEeCCCCCCCc
Confidence 99999999999999999972 2233333365543 245999999999987754
No 6
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9e-15 Score=113.03 Aligned_cols=108 Identities=22% Similarity=0.299 Sum_probs=79.3
Q ss_pred CeEEEEEeeeccCCCcCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHH
Q 030274 33 SQVLHLFCLQSASTDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVL 109 (180)
Q Consensus 33 ~~~~~i~~~~~~~~~~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l 109 (180)
+.++.+. +.++.|... +-.++.+|.+.+... .+.+|||+|||.|.+|+.+++.. .+++.+|.|..++
T Consensus 126 ~~~~~~~------t~pGVFS~~~lD~GS~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av 195 (300)
T COG2813 126 GHELTFK------TLPGVFSRDKLDKGSRLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV 195 (300)
T ss_pred cCceEEE------eCCCCCcCCCcChHHHHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH
Confidence 5667777 456666543 777888887776543 23399999999999999999975 6999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 110 KILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 110 ~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+.+|+|+..|+.. +..+. +.+. .+ ...++||+||+|||++.
T Consensus 196 ~~ar~Nl~~N~~~-------~~~v~---~s~~--~~----~v~~kfd~IisNPPfh~ 236 (300)
T COG2813 196 ESARKNLAANGVE-------NTEVW---ASNL--YE----PVEGKFDLIISNPPFHA 236 (300)
T ss_pred HHHHHhHHHcCCC-------ccEEE---Eecc--cc----cccccccEEEeCCCccC
Confidence 9999999999732 11111 1111 11 12448999999999986
No 7
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=110.06 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=79.3
Q ss_pred CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274 52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129 (180)
Q Consensus 52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~ 129 (180)
|.+.--.+.+|+.|..-. ..++|||||||+|.+++++|+. . ++++++|+++++.+.|++|++.|+ ...
T Consensus 26 ~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~------l~~ 95 (248)
T COG4123 26 GFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP------LEE 95 (248)
T ss_pred ccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc------chh
Confidence 555555788888887532 3679999999999999999987 3 799999999999999999999987 345
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCc
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNR 169 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~ 169 (180)
++++.+.|..+... .....+||+|+||||+|....
T Consensus 96 ri~v~~~Di~~~~~-----~~~~~~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 96 RIQVIEADIKEFLK-----ALVFASFDLIICNPPYFKQGS 130 (248)
T ss_pred ceeEehhhHHHhhh-----cccccccCEEEeCCCCCCCcc
Confidence 66676655544321 112346999999999998443
No 8
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.58 E-value=3.1e-14 Score=114.74 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=84.3
Q ss_pred EEEEEECCeEEEEEeeeccCCCcCCcCce-ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEe
Q 030274 26 LTTFTFGSQVLHLFCLQSASTDFDLTGQL-VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLT 102 (180)
Q Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~-~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~ 102 (180)
..++.+.+..+.+. +.++.|+.. +-.++.+|.+++... .+.+|||||||+|.+++.+++. ..+|+++
T Consensus 189 ~~~~~~~~~~~~~~------~~~gVFs~~~LD~GtrllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v 258 (378)
T PRK15001 189 TVSWKLEGTDWTIH------NHANVFSRTGLDIGARFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV 258 (378)
T ss_pred eeEEEEcCceEEEE------ecCCccCCCCcChHHHHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEE
Confidence 34666778788887 345555543 777788877776432 2359999999999999999886 4799999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 103 DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 103 D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
|.|+.+++.+++|++.|+... ..++. +.+.+. +... ...+||+|++|||++.
T Consensus 259 D~S~~Av~~A~~N~~~n~~~~----~~~v~---~~~~D~--l~~~---~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 259 DESPMAVASSRLNVETNMPEA----LDRCE---FMINNA--LSGV---EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred ECCHHHHHHHHHHHHHcCccc----CceEE---EEEccc--cccC---CCCCEEEEEECcCccc
Confidence 999999999999999886210 01222 233332 1111 2358999999999875
No 9
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.57 E-value=2.1e-14 Score=112.24 Aligned_cols=94 Identities=21% Similarity=0.312 Sum_probs=71.7
Q ss_pred CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
.||.-..|.+....++|.+.. .++++|||+|||||+++++++++|+ +|+++|+++.+++.+++|++.|+..
T Consensus 139 AFGTG~H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~------ 210 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE------ 210 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T------
T ss_pred cccCCCCHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC------
Confidence 467777899999999988774 3678999999999999999999985 7999999999999999999999843
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD 162 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d 162 (180)
.++.+. ...+. ...+||+|++|=
T Consensus 211 ~~~~v~----~~~~~-------~~~~~dlvvANI 233 (295)
T PF06325_consen 211 DRIEVS----LSEDL-------VEGKFDLVVANI 233 (295)
T ss_dssp TCEEES----CTSCT-------CCS-EEEEEEES
T ss_pred eeEEEE----Eeccc-------ccccCCEEEECC
Confidence 233321 11111 247899999874
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.57 E-value=1.5e-14 Score=108.18 Aligned_cols=91 Identities=14% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
..+++|||+|||.|.++..+|+.|++|+++|.++++++.|+..+..++ ..++|.... .+.+. ...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-------------v~i~y~~~~-~edl~-~~~ 122 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-------------VNIDYRQAT-VEDLA-SAG 122 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-------------ccccchhhh-HHHHH-hcC
Confidence 478999999999999999999999999999999999999999999987 224444432 22221 223
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
++||+|+|.+++.| +++...+..+.+
T Consensus 123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~ 149 (243)
T COG2227 123 GQFDVVTCMEVLEHVPDPESFLRACAK 149 (243)
T ss_pred CCccEEEEhhHHHccCCHHHHHHHHHH
Confidence 79999999999988 677666666554
No 11
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.54 E-value=8.2e-14 Score=105.61 Aligned_cols=124 Identities=30% Similarity=0.387 Sum_probs=91.2
Q ss_pred CCcCceecchHHHHHHHHhhCCC------CCC-----CCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHH
Q 030274 49 DLTGQLVWPGAMLMNDYLSKNPD------VLQ-----ASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 49 ~~~g~~~w~~~~~l~~~l~~~~~------~~~-----~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~ 116 (180)
..+..++|+++..++.++..... ... ..+|||||+|||+.|+.+|. .+++|+.+|. +..+..++.|.
T Consensus 50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~ 128 (248)
T KOG2793|consen 50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNR 128 (248)
T ss_pred cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhh
Confidence 44678899999999998876544 112 34699999999999999998 5789999999 56777777776
Q ss_pred HHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC-CcEEEEccccccC-CchhhHHHHHH
Q 030274 117 EHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG-FDLILGADIYILY-NRSLLMTSFFQ 178 (180)
Q Consensus 117 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fD~Ii~~d~~y~~-~~~~l~~~~~~ 178 (180)
..|+.... .....+.+..+.|++....... ... +|+|+++||+|.+ ....+...+..
T Consensus 129 ~~~~~~l~-~~g~~v~v~~L~Wg~~~~~~~~----~~~~~DlilasDvvy~~~~~e~Lv~tla~ 187 (248)
T KOG2793|consen 129 DKNNIALN-QLGGSVIVAILVWGNALDVSFR----LPNPFDLILASDVVYEEESFEGLVKTLAF 187 (248)
T ss_pred hhhhhhhh-hcCCceeEEEEecCCcccHhhc----cCCcccEEEEeeeeecCCcchhHHHHHHH
Confidence 66543211 1234788999999998764443 233 9999999999994 55555555443
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=6.4e-14 Score=94.52 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=61.8
Q ss_pred CCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||||||+|..++.+++ .+.+|+++|+++.+++.+++|+...+ ...++.+..-++ ... ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~-~~~------~~~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG------LSDRITFVQGDA-EFD------PDF 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT------TTTTEEEEESCC-HGG------TTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECcc-ccC------ccc
Confidence 467999999999999999999 68999999999999999999996654 245677777776 111 123
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
..+||+|++..
T Consensus 68 ~~~~D~v~~~~ 78 (112)
T PF12847_consen 68 LEPFDLVICSG 78 (112)
T ss_dssp SSCEEEEEECS
T ss_pred CCCCCEEEECC
Confidence 56799999999
No 13
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4e-14 Score=109.97 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=73.9
Q ss_pred CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
.||.-..|.+..-.++|.+... ++++|||+|||+|+++++++++|+ +|+++|+++.+++.+++|+..|+...
T Consensus 140 AFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~----- 212 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL----- 212 (300)
T ss_pred ccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----
Confidence 3566678888888888887754 788999999999999999999986 69999999999999999999998321
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcc
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGAD 162 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d 162 (180)
........... ....++||+|++|=
T Consensus 213 ----~~~~~~~~~~~-----~~~~~~~DvIVANI 237 (300)
T COG2264 213 ----LVQAKGFLLLE-----VPENGPFDVIVANI 237 (300)
T ss_pred ----hhhcccccchh-----hcccCcccEEEehh
Confidence 11222222211 01235899999984
No 14
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.50 E-value=4.6e-13 Score=106.29 Aligned_cols=104 Identities=16% Similarity=0.028 Sum_probs=71.5
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
++.|.+..-..+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.++.+++.+++|++.++.
T Consensus 147 ~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------ 220 (315)
T PRK03522 147 PQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------ 220 (315)
T ss_pred CCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 34444444444455555444332223567999999999999999999999999999999999999999999872
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.++++...+.. . +......+||+|+.+||-
T Consensus 221 -~~v~~~~~D~~---~---~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 221 -TNVQFQALDST---Q---FATAQGEVPDLVLVNPPR 250 (315)
T ss_pred -CceEEEEcCHH---H---HHHhcCCCCeEEEECCCC
Confidence 12334333221 1 111123479999999983
No 15
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.49 E-value=5.3e-14 Score=106.16 Aligned_cols=95 Identities=15% Similarity=0.322 Sum_probs=68.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
.+++|||+|||+|+++..||+.|++|+++|.++.+++.|++....+-.. ...+ ..++.+...+ . +...+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~-----~~~~-~y~l~~~~~~-~----E~~~~ 157 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL-----EGAI-AYRLEYEDTD-V----EGLTG 157 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh-----cccc-ceeeehhhcc-h----hhccc
Confidence 3578999999999999999999999999999999999999984443211 1111 1223333322 1 12345
Q ss_pred CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 154 GFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
.||.|+|++++.| .+....+.++.+.
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~ 184 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSAL 184 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHH
Confidence 7999999999988 6777777776654
No 16
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.48 E-value=6.6e-13 Score=107.65 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=78.6
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
++.|.+..-.....|.+.+.......++.+|||||||+|.+++.++..+.+|+++|.++.+++.+++|++.|+.
T Consensus 207 ~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------ 280 (374)
T TIGR02085 207 PQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------ 280 (374)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------
Confidence 45566666666667766555433223567999999999999999998889999999999999999999999872
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
.++.+...+.. ........+||+|+.+||. .......++.+
T Consensus 281 -~~~~~~~~d~~------~~~~~~~~~~D~vi~DPPr-~G~~~~~l~~l 321 (374)
T TIGR02085 281 -DNLSFAALDSA------KFATAQMSAPELVLVNPPR-RGIGKELCDYL 321 (374)
T ss_pred -CcEEEEECCHH------HHHHhcCCCCCEEEECCCC-CCCcHHHHHHH
Confidence 13333333221 1111122469999999984 33333433333
No 17
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=9.4e-13 Score=106.75 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCe
Q 030274 21 NDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CRE 98 (180)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~ 98 (180)
|-.|...+..|.+.++.+. ++ ....-|.++.+.+.+.+... ++.+|||+|||+|.+++.+++. +.+
T Consensus 210 PlqYIlG~~~F~G~~f~V~--------p~--vLIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~ 277 (423)
T PRK14966 210 PVAYILGVREFYGRRFAVN--------PN--VLIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAF 277 (423)
T ss_pred CceeEeeeeeecCcEEEeC--------CC--ccCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCE
Confidence 4445556666777777665 11 11134556788887765543 4569999999999999988864 579
Q ss_pred EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
|+++|+|+.+++.+++|++.++ .++.+...+|.... .+ ..++||+|++|||+...
T Consensus 278 VtAVDiS~~ALe~AreNa~~~g--------~rV~fi~gDl~e~~-----l~-~~~~FDLIVSNPPYI~~ 332 (423)
T PRK14966 278 VRASDISPPALETARKNAADLG--------ARVEFAHGSWFDTD-----MP-SEGKWDIIVSNPPYIEN 332 (423)
T ss_pred EEEEECCHHHHHHHHHHHHHcC--------CcEEEEEcchhccc-----cc-cCCCccEEEECCCCCCc
Confidence 9999999999999999998875 24666666664321 00 13479999999997653
No 18
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.47 E-value=5e-13 Score=110.65 Aligned_cols=117 Identities=15% Similarity=0.023 Sum_probs=84.8
Q ss_pred ECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHH
Q 030274 31 FGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLK 110 (180)
Q Consensus 31 ~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~ 110 (180)
|.+..+.+. ++.|.+..-..++.+.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|.|+.+++
T Consensus 262 ~~g~~f~~~--------~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~ 333 (443)
T PRK13168 262 EFGLRLAFS--------PRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVE 333 (443)
T ss_pred cCCeEEEEC--------CCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 555555554 455666566667788887776655456789999999999999999998899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274 111 ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYI 165 (180)
Q Consensus 111 ~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y 165 (180)
.|++|++.|+. .++.+...++... +.. ......+||+|+++||.-
T Consensus 334 ~A~~n~~~~~~-------~~v~~~~~d~~~~--l~~-~~~~~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 334 RARENARRNGL-------DNVTFYHANLEED--FTD-QPWALGGFDKVLLDPPRA 378 (443)
T ss_pred HHHHHHHHcCC-------CceEEEEeChHHh--hhh-hhhhcCCCCEEEECcCCc
Confidence 99999999862 2355555555322 110 011235799999999864
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=5.4e-13 Score=95.05 Aligned_cols=93 Identities=17% Similarity=0.264 Sum_probs=71.4
Q ss_pred CCCeEEEeCCcCChHHHHHh-hc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCS-RF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la-~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++.+|||+|||+|.++..++ +. +.+|+++|+++++++.++++++.++. .++++...++.+.+. .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-------~ni~~~~~d~~~l~~------~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-------DNIEFIQGDIEDLPQ------E 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-------TTEEEEESBTTCGCG------C
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-------cccceEEeehhcccc------c
Confidence 56799999999999999999 43 57999999999999999999998862 257777777766321 0
Q ss_pred CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
...+||+|+++.++++ .+...+++.+.+.
T Consensus 70 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~ 99 (152)
T PF13847_consen 70 LEEKFDIIISNGVLHHFPDPEKVLKNIIRL 99 (152)
T ss_dssp SSTTEEEEEEESTGGGTSHHHHHHHHHHHH
T ss_pred cCCCeeEEEEcCchhhccCHHHHHHHHHHH
Confidence 1268999999999877 4455566665543
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.45 E-value=1.2e-12 Score=97.35 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..++.+++.|.+|+++|.|+.+++.+++++..++.. ++.....++.... ..+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-------~v~~~~~d~~~~~--------~~~ 94 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-------NLHTAVVDLNNLT--------FDG 94 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------cceEEecChhhCC--------cCC
Confidence 5679999999999999999999999999999999999999998887521 2334444433211 245
Q ss_pred CCcEEEEccccccCC---chhhHHHHHHh
Q 030274 154 GFDLILGADIYILYN---RSLLMTSFFQA 179 (180)
Q Consensus 154 ~fD~Ii~~d~~y~~~---~~~l~~~~~~a 179 (180)
+||+|+++.++++.. ...+++.+.++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~ 123 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRC 123 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHH
Confidence 799999999887633 33445444443
No 21
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.45 E-value=1.4e-12 Score=100.39 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=80.3
Q ss_pred ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhc--CCeEE
Q 030274 24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSRF--CREVL 100 (180)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~--~~~V~ 100 (180)
|...+..|.+.++.+. ++.+- .-+.++.|.+.+..... .....+|||+|||+|.+++.+++. +.+|+
T Consensus 45 yi~g~~~f~g~~~~v~--------~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~ 114 (251)
T TIGR03704 45 HVLGWAEFCGLRIAVD--------PGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELH 114 (251)
T ss_pred HhcccCeEcCeEEEEC--------CCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEE
Confidence 4444566777666665 33222 23456777776654332 123458999999999999998865 46999
Q ss_pred EecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 101 ~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
++|+++.+++.+++|++.|+ ..+...++... +.. ...++||+|++|||++.
T Consensus 115 ~vDis~~al~~A~~N~~~~~----------~~~~~~D~~~~--l~~---~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 115 AADIDPAAVRCARRNLADAG----------GTVHEGDLYDA--LPT---ALRGRVDILAANAPYVP 165 (251)
T ss_pred EEECCHHHHHHHHHHHHHcC----------CEEEEeechhh--cch---hcCCCEeEEEECCCCCC
Confidence 99999999999999999885 23455554432 110 12357999999999864
No 22
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.44 E-value=1.2e-12 Score=102.53 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=61.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|++.++.. .++.+...++... + .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------~~i~~~~~D~~~~-----~---~ 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------DRVTLIQSDLFAA-----L---P 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEECchhhc-----c---C
Confidence 4568999999999999999986 469999999999999999999998621 2355555544321 1 2
Q ss_pred CCCCcEEEEcccccc
Q 030274 152 PGGFDLILGADIYIL 166 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~ 166 (180)
..+||+|+++||+..
T Consensus 187 ~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 187 GRKYDLIVSNPPYVD 201 (284)
T ss_pred CCCccEEEECCCCCC
Confidence 347999999999755
No 23
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.5e-12 Score=94.06 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=63.3
Q ss_pred CCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 69 NPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 69 ~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
......+++|+|||||||.+|+.++-+| .+|+++|+++++++.+++|+.... .++.+..-+..+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------g~v~f~~~dv~~------- 104 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------GDVEFVVADVSD------- 104 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------CceEEEEcchhh-------
Confidence 3445688899999999999999999998 699999999999999999999853 234444333332
Q ss_pred HhhCCCCCcEEEEccccc
Q 030274 148 IQKYPGGFDLILGADIYI 165 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~d~~y 165 (180)
...++|.++.|||+=
T Consensus 105 ---~~~~~dtvimNPPFG 119 (198)
T COG2263 105 ---FRGKFDTVIMNPPFG 119 (198)
T ss_pred ---cCCccceEEECCCCc
Confidence 367899999999963
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=1.7e-12 Score=96.32 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=64.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..++.+++.+.+|+++|+++.+++.+++++..++.+ +.....+.... ....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--------v~~~~~d~~~~--------~~~~ 93 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--------LRTDAYDINAA--------ALNE 93 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--------ceeEeccchhc--------cccC
Confidence 4579999999999999999999999999999999999999998877521 22333332211 1235
Q ss_pred CCcEEEEccccccCCc---hhhHHHHHH
Q 030274 154 GFDLILGADIYILYNR---SLLMTSFFQ 178 (180)
Q Consensus 154 ~fD~Ii~~d~~y~~~~---~~l~~~~~~ 178 (180)
+||+|+++.++++... ..+++.+.+
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~ 121 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQA 121 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 7999999998776332 344444443
No 25
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=1.1e-12 Score=97.35 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=72.2
Q ss_pred cchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHH-HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 56 WPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGIL-CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 56 w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~-la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
-|....+.+.+.... ....+.+|||||||+|.+++. +++...+|+++|.++.+++.+++|++.++. .++.+
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-------~~v~~ 106 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-------GNARV 106 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEE
Confidence 455655544333321 113567999999999999995 455557999999999999999999999862 13444
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHH
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFF 177 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~ 177 (180)
..-++.. . +.....+||+|+++||+.......+++.+.
T Consensus 107 ~~~D~~~-----~-l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~ 144 (199)
T PRK10909 107 VNTNALS-----F-LAQPGTPHNVVFVDPPFRKGLLEETINLLE 144 (199)
T ss_pred EEchHHH-----H-HhhcCCCceEEEECCCCCCChHHHHHHHHH
Confidence 4433321 1 122234799999999964444445555443
No 26
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=1.3e-12 Score=95.67 Aligned_cols=86 Identities=29% Similarity=0.420 Sum_probs=65.9
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
..|..++.. .++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.+++|++.++. ++.+...++.
T Consensus 9 ~~l~~~l~~----~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------~~~~~~~d~~ 76 (179)
T TIGR00537 9 LLLEANLRE----LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--------GLDVVMTDLF 76 (179)
T ss_pred HHHHHHHHh----cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--------ceEEEEcccc
Confidence 445555432 2557899999999999999999888999999999999999999998752 2444444443
Q ss_pred CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 140 NSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.. ..++||+|++++|+++
T Consensus 77 ~~---------~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 77 KG---------VRGKFDVILFNPPYLP 94 (179)
T ss_pred cc---------cCCcccEEEECCCCCC
Confidence 32 2358999999999865
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.42 E-value=2.1e-12 Score=102.46 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=69.4
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.++.+|||+|||+|.++..+++.|.+|+++|.++++++.++.++..++. ..++.+... +.+.+ +...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~------~~~i~~~~~---dae~l----~~~~ 196 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV------TSTIEYLCT---TAEKL----ADEG 196 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc------ccceeEEec---CHHHh----hhcc
Confidence 3667999999999999999999999999999999999999988766531 112333322 22111 1235
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
++||+|++.+++++ .+....+..+.+.
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~ 224 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSAL 224 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHH
Confidence 68999999999988 6666777666554
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=2.4e-12 Score=99.29 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=69.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..++.+++.+.+|+++|+++++++.|++++...+. ..++.+...+..+ + .+...+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~------~~~v~~~~~d~~~---l---~~~~~~ 111 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV------SDNMQFIHCAAQD---I---AQHLET 111 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------ccceEEEEcCHHH---H---hhhcCC
Confidence 557999999999999999999999999999999999999999887752 1223333322221 1 112356
Q ss_pred CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 154 GFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
+||+|++..++++ .+...++..+.+.
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~ 138 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSV 138 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHH
Confidence 8999999999877 5666666665544
No 29
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.41 E-value=8.4e-12 Score=99.92 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=70.4
Q ss_pred cCCcCc-eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCC
Q 030274 48 FDLTGQ-LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSEN 124 (180)
Q Consensus 48 ~~~~g~-~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~ 124 (180)
++.|.+ .+-.++..|.+.+... ...+|||+|||+|.+++.+++.+ .+|+++|.++.+++.+++|++.|+..
T Consensus 173 pgvFs~~~lD~gt~lLl~~l~~~----~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-- 246 (342)
T PRK09489 173 PGVFSRDGLDVGSQLLLSTLTPH----TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-- 246 (342)
T ss_pred CCCCCCCCCCHHHHHHHHhcccc----CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 444444 3555667777766432 23489999999999999998864 58999999999999999999998621
Q ss_pred CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
..+. +.+. .. ...++||+|++|+|++.
T Consensus 247 ------~~~~---~~D~--~~----~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 247 ------GEVF---ASNV--FS----DIKGRFDMIISNPPFHD 273 (342)
T ss_pred ------CEEE---Eccc--cc----ccCCCccEEEECCCccC
Confidence 1222 2221 11 12468999999999865
No 30
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=2.8e-12 Score=94.23 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=60.5
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 72 VLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..+..++||||||.|.-++.+|+.|..|+++|.|+.+++.+++.++..++ .++....+..... .
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--------~i~~~~~Dl~~~~--------~ 91 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--------DIRTRVADLNDFD--------F 91 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---------TEEEEE-BGCCBS---------
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--------eeEEEEecchhcc--------c
Confidence 34677999999999999999999999999999999999999888877752 3556666665442 2
Q ss_pred CCCCcEEEEccccccCC
Q 030274 152 PGGFDLILGADIYILYN 168 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~ 168 (180)
+..||+|++.-++.+-.
T Consensus 92 ~~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 92 PEEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp TTTEEEEEEESSGGGS-
T ss_pred cCCcCEEEEEEEeccCC
Confidence 46899999876665533
No 31
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.41 E-value=4.4e-12 Score=104.72 Aligned_cols=107 Identities=12% Similarity=-0.031 Sum_probs=77.9
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
+..|.+.....+..|.+.+.+.....++.+|||+|||+|.+++.+|+.+.+|+++|.++.+++.+++|++.|+.
T Consensus 266 ~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------ 339 (431)
T TIGR00479 266 ARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------ 339 (431)
T ss_pred CCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------
Confidence 45566667777777877777655544667999999999999999999888999999999999999999999872
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.++.+...++... +.. ......+||+|+.+||-
T Consensus 340 -~nv~~~~~d~~~~--l~~-~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 340 -ANVEFLAGTLETV--LPK-QPWAGQIPDVLLLDPPR 372 (431)
T ss_pred -CceEEEeCCHHHH--HHH-HHhcCCCCCEEEECcCC
Confidence 2344443333210 111 11123579999999884
No 32
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=3.9e-12 Score=100.55 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=60.1
Q ss_pred CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|++.++.. .++.+...++... + ...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------~~i~~~~~D~~~~-----l---~~~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------DRVTLIESDLFAA-----L---PGR 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------CcEEEEECchhhh-----C---CCC
Confidence 68999999999999999876 479999999999999999999988621 2355555444321 1 234
Q ss_pred CCcEEEEcccccc
Q 030274 154 GFDLILGADIYIL 166 (180)
Q Consensus 154 ~fD~Ii~~d~~y~ 166 (180)
+||+|+++||+..
T Consensus 201 ~fDlIvsNPPyi~ 213 (307)
T PRK11805 201 RYDLIVSNPPYVD 213 (307)
T ss_pred CccEEEECCCCCC
Confidence 7999999999754
No 33
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.38 E-value=4.8e-12 Score=99.09 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=80.7
Q ss_pred ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcC--CeEE
Q 030274 24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFC--REVL 100 (180)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~ 100 (180)
|.+....|.+.++.+. .+.+ .-.|.++.+.+.+.... ...+..+|||+|||+|.+++.+++.. .+|+
T Consensus 73 yi~g~~~f~g~~f~v~--------~~vl--iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~ 142 (284)
T TIGR00536 73 YLLGSKEFYGLEFFVN--------EHVL--IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVI 142 (284)
T ss_pred HHhCcceEcCeEEEEC--------CCCc--CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEE
Confidence 4444556677666665 1111 12344566666554321 11123689999999999999999863 6999
Q ss_pred EecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 101 LTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 101 ~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
++|+++.+++.+++|++.++.. .++.+...+|.... ...+||+|++|||+...
T Consensus 143 avDis~~al~~a~~n~~~~~~~------~~v~~~~~d~~~~~--------~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 143 AVDISPDALAVAEENAEKNQLE------HRVEFIQSNLFEPL--------AGQKIDIIVSNPPYIDE 195 (284)
T ss_pred EEECCHHHHHHHHHHHHHcCCC------CcEEEEECchhccC--------cCCCccEEEECCCCCCc
Confidence 9999999999999999988621 23566665554321 12379999999998663
No 34
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.38 E-value=9.9e-12 Score=100.37 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=83.0
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
++.|.+.....++.|.+++.+.... .+.+|||++||+|.+++.+++...+|+++|.++.+++.+++|+..|+..
T Consensus 181 ~~sF~Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~----- 254 (362)
T PRK05031 181 ENSFTQPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID----- 254 (362)
T ss_pred CCCeeccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-----
Confidence 5668888888889999888765432 2357999999999999999998889999999999999999999999721
Q ss_pred CCcEEEEEeecCCCchhhHHHhh-----------CCCCCcEEEEccccccCCchhhHHHH
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQK-----------YPGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
++.+...+.... +..+... ...+||+|+..|| +..-...+++.+
T Consensus 255 --~v~~~~~d~~~~--l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R~G~~~~~l~~l 309 (362)
T PRK05031 255 --NVQIIRMSAEEF--TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-RAGLDDETLKLV 309 (362)
T ss_pred --cEEEEECCHHHH--HHHHhhcccccccccccccCCCCCEEEECCC-CCCCcHHHHHHH
Confidence 344443333221 1111100 0125999999999 443344444444
No 35
>PRK14967 putative methyltransferase; Provisional
Probab=99.36 E-value=6.5e-12 Score=95.06 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
.+..+++++.... ..++.+|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+..++. ++.+...
T Consensus 21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--------~~~~~~~ 91 (223)
T PRK14967 21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--------DVDVRRG 91 (223)
T ss_pred cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--------eeEEEEC
Confidence 4567777776532 33567999999999999999998765 999999999999999999988851 2344444
Q ss_pred ecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 137 EWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
++... ....+||+|++++|++.
T Consensus 92 d~~~~--------~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 92 DWARA--------VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred chhhh--------ccCCCeeEEEECCCCCC
Confidence 44321 12458999999998765
No 36
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.3e-12 Score=92.85 Aligned_cols=118 Identities=18% Similarity=0.298 Sum_probs=84.3
Q ss_pred CcccCCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC
Q 030274 17 SFFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC 96 (180)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~ 96 (180)
..|++..+. .+.+.+..+.|...++++.. .+.-.+.+.....++.+|||||||+|+.+..+|+..
T Consensus 30 e~FVp~~~~--~~AY~d~~lpi~~gqtis~P-------------~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~ 94 (209)
T COG2518 30 ELFVPAAYK--HLAYEDRALPIGCGQTISAP-------------HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV 94 (209)
T ss_pred HhccCchhh--cccccCCcccCCCCceecCc-------------HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh
Confidence 468887776 77777887887755554432 233334444455688999999999999999999998
Q ss_pred CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274 97 REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 97 ~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~ 163 (180)
.+|+.+|..++..+.|++|++..++ .++.+..-|=... + ....+||.|+.+--
T Consensus 95 ~~V~siEr~~~L~~~A~~~L~~lg~-------~nV~v~~gDG~~G-----~--~~~aPyD~I~Vtaa 147 (209)
T COG2518 95 GRVVSIERIEELAEQARRNLETLGY-------ENVTVRHGDGSKG-----W--PEEAPYDRIIVTAA 147 (209)
T ss_pred CeEEEEEEcHHHHHHHHHHHHHcCC-------CceEEEECCcccC-----C--CCCCCcCEEEEeec
Confidence 8999999999999999999999873 2344443332221 1 12368999987653
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.35 E-value=1.3e-11 Score=93.11 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=61.8
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++. ..++.+...++... .
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~------~~~i~~~~~d~~~~----------~ 117 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV------AGNVEFEVNDLLSL----------C 117 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEECChhhC----------C
Confidence 4678999999999999999998888999999999999999999877642 11344444333321 2
Q ss_pred CCCcEEEEccccccC
Q 030274 153 GGFDLILGADIYILY 167 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~~ 167 (180)
.+||+|++++++++.
T Consensus 118 ~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 118 GEFDIVVCMDVLIHY 132 (219)
T ss_pred CCcCEEEEhhHHHhC
Confidence 689999999997664
No 38
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=2e-11 Score=97.84 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 73 LQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++.++. ..++.+...+..+. +..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~------~~~v~~~~~D~~~~-------~~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL------SDKVSFQVADALNQ-------PFE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEcCcccC-------CCC
Confidence 46779999999999999999885 78999999999999999999888752 12355554444332 113
Q ss_pred CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 152 PGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
.++||+|++..++++ .+....++.+.+
T Consensus 184 ~~~FD~V~s~~~~~h~~d~~~~l~e~~r 211 (340)
T PLN02244 184 DGQFDLVWSMESGEHMPDKRKFVQELAR 211 (340)
T ss_pred CCCccEEEECCchhccCCHHHHHHHHHH
Confidence 568999999998766 555555555544
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.35 E-value=5.3e-12 Score=105.93 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=81.8
Q ss_pred ceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCC------------------------CCCCCeEE
Q 030274 24 YQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPD------------------------VLQASSIL 79 (180)
Q Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~------------------------~~~~~~vL 79 (180)
|......|.+.+|.|.. + =..--|.++.|++++.+... ..+..+||
T Consensus 74 YI~G~~~F~g~~f~V~~--------~--VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 74 YITGVKEFYSREFIVNK--------H--VLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred HHhCcCEEcCcEEEeCC--------C--cccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 44556677787777651 1 11234556777777653211 11346899
Q ss_pred EeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcE
Q 030274 80 ELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDL 157 (180)
Q Consensus 80 dlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 157 (180)
|+|||+|.+++.+++. +.+|+++|+|+.+++.+++|+..++.. .++.+...+|... ....+||+
T Consensus 144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------~~v~~~~~D~~~~--------~~~~~fDl 209 (506)
T PRK01544 144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------DRIQIIHSNWFEN--------IEKQKFDF 209 (506)
T ss_pred EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------cceeeeecchhhh--------CcCCCccE
Confidence 9999999999988764 579999999999999999999888621 2344555444321 12357999
Q ss_pred EEEccccccC
Q 030274 158 ILGADIYILY 167 (180)
Q Consensus 158 Ii~~d~~y~~ 167 (180)
|++|||+...
T Consensus 210 IvsNPPYi~~ 219 (506)
T PRK01544 210 IVSNPPYISH 219 (506)
T ss_pred EEECCCCCCc
Confidence 9999998763
No 40
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.35 E-value=5.9e-12 Score=99.55 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEe-ecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKL-EWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (180)
.+.++||||||+|.+...++.. +.+++++|+++.+++.|++|++.| +.. .++.+... +-.. .+... .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------~~I~~~~~~~~~~--i~~~i-~ 184 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------GAIRLRLQKDSKA--IFKGI-I 184 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------CcEEEEEccchhh--hhhcc-c
Confidence 4579999999999877776653 689999999999999999999999 532 23443221 1110 01000 0
Q ss_pred hCCCCCcEEEEccccccCCc
Q 030274 150 KYPGGFDLILGADIYILYNR 169 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~~~~ 169 (180)
...++||+|+||||+|....
T Consensus 185 ~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 185 HKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ccCCceEEEEeCCCCcCcch
Confidence 12458999999999998543
No 41
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.34 E-value=1.3e-11 Score=97.74 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=60.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..++.+++.|.+|+++|+|+.|++.+++|+....... ....++.+...++.. ..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~--~~~~~~~f~~~Dl~~----------l~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL--PPEVLPKFEANDLES----------LSG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc--ccccceEEEEcchhh----------cCC
Confidence 57799999999999999999999999999999999999999987642100 001122333332211 246
Q ss_pred CCcEEEEccccccC
Q 030274 154 GFDLILGADIYILY 167 (180)
Q Consensus 154 ~fD~Ii~~d~~y~~ 167 (180)
+||+|++.+++++.
T Consensus 212 ~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 212 KYDTVTCLDVLIHY 225 (315)
T ss_pred CcCEEEEcCEEEec
Confidence 89999999998663
No 42
>PLN02672 methionine S-methyltransferase
Probab=99.34 E-value=1.5e-11 Score=109.70 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=74.2
Q ss_pred chHHHHHHHHhhCCC-CCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCC---------
Q 030274 57 PGAMLMNDYLSKNPD-VLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSEN--------- 124 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~-~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~--------- 124 (180)
|.++.|++.|...+. .+++.+|||+|||+|.+++.+++.. .+|+++|+|+.+++.|++|++.|+....
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~ 179 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG 179 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence 455778887655432 2346799999999999999998863 6999999999999999999999863210
Q ss_pred CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 125 PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
.....++.+..-+|...- .....+||+||+|||+...
T Consensus 180 ~~l~~rV~f~~sDl~~~~------~~~~~~fDlIVSNPPYI~~ 216 (1082)
T PLN02672 180 KTLLDRVEFYESDLLGYC------RDNNIELDRIVGCIPQILN 216 (1082)
T ss_pred ccccccEEEEECchhhhc------cccCCceEEEEECCCcCCC
Confidence 011234666666665321 1112369999999998763
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=1.4e-11 Score=96.62 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..++.+++.|.+|+++|.|+.+++.+++++..++. ++.+...+..... ..+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--------~v~~~~~D~~~~~--------~~~ 183 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--------NIRTGLYDINSAS--------IQE 183 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--------ceEEEEechhccc--------ccC
Confidence 456999999999999999999999999999999999999999988762 2334333332211 256
Q ss_pred CCcEEEEccccccC
Q 030274 154 GFDLILGADIYILY 167 (180)
Q Consensus 154 ~fD~Ii~~d~~y~~ 167 (180)
+||+|+++.++++-
T Consensus 184 ~fD~I~~~~vl~~l 197 (287)
T PRK12335 184 EYDFILSTVVLMFL 197 (287)
T ss_pred CccEEEEcchhhhC
Confidence 89999999988763
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=1.3e-11 Score=92.14 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=60.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++.. +.+...+.... ..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~------------~~~~~~d~~~~--------~~ 102 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN------------INIIQGSLFDP--------FK 102 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC------------CcEEEeeccCC--------CC
Confidence 5678999999999999988875 57999999999999999987421 22333333221 13
Q ss_pred CCCCcEEEEccccccCCchhhHHHH
Q 030274 152 PGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
.++||+|+++.++++-.+..+...+
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l 127 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAY 127 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHH
Confidence 5689999999999875444444333
No 45
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=8.5e-11 Score=95.80 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=63.2
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++++|||+|||+|.+++.++..+ .+|+++|.++.+++.+++|++.|+... .++++...+..+. +.. .....
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-----~~v~~i~~D~~~~--l~~-~~~~~ 291 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----SKAEFVRDDVFKL--LRT-YRDRG 291 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-----CcEEEEEccHHHH--HHH-HHhcC
Confidence 57899999999999999877665 499999999999999999999997320 1233333332211 111 11124
Q ss_pred CCCcEEEEccccccCCch
Q 030274 153 GGFDLILGADIYILYNRS 170 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~~~~~ 170 (180)
.+||+|+++||.|.....
T Consensus 292 ~~fDlVilDPP~f~~~k~ 309 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKS 309 (396)
T ss_pred CCCCEEEECCCCCCCChH
Confidence 589999999998765443
No 46
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.31 E-value=3.4e-12 Score=86.75 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 75 ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
|.+|||+|||+|.+.+.+++.+ .+++++|+++.+++.++.|+..++. ..++.+..-++.... ......
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~------~~~~~~~~~D~~~~~-----~~~~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL------DDRVEVIVGDARDLP-----EPLPDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT------TTTEEEEESHHHHHH-----HTCTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC------CceEEEEECchhhch-----hhccCc
Confidence 4589999999999999999988 8999999999999999999999862 234555554443221 112467
Q ss_pred CCcEEEEcccccc
Q 030274 154 GFDLILGADIYIL 166 (180)
Q Consensus 154 ~fD~Ii~~d~~y~ 166 (180)
+||+|++|+|+..
T Consensus 70 ~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 70 KFDLIVTNPPYGP 82 (117)
T ss_dssp -EEEEEE--STTS
T ss_pred eeEEEEECCCCcc
Confidence 9999999999875
No 47
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.31 E-value=2.5e-11 Score=95.26 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=70.2
Q ss_pred CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
.||.-..|.+....+++.+.. .++++|||+|||+|.+++.+++.+ .+|+++|+++.+++.+++|+..|+..
T Consensus 137 aFgtG~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~------ 208 (288)
T TIGR00406 137 AFGTGTHPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS------ 208 (288)
T ss_pred cccCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 355556677777777776543 267899999999999999998886 48999999999999999999998732
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~ 163 (180)
.++.+...+ .. ....++||+|+++-.
T Consensus 209 ~~~~~~~~~---~~------~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 209 DRLQVKLIY---LE------QPIEGKADVIVANIL 234 (288)
T ss_pred cceEEEecc---cc------cccCCCceEEEEecC
Confidence 122222111 10 112468999999754
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.31 E-value=1.8e-11 Score=94.14 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred HHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274 63 NDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD 142 (180)
Q Consensus 63 ~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
++.+.+.....+..+|||+|||+|..+..+++.+.+|+++|+++.+++.++++.... .+...+....
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~------------~~~~~d~~~~- 97 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAAD------------HYLAGDIESL- 97 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC------------CEEEcCcccC-
Confidence 333333333335679999999999999988888899999999999999998874321 1333333221
Q ss_pred hhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 143 QINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 143 ~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
+....+||+|+++.++.+ .+....+..+.+
T Consensus 98 ------~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~ 128 (251)
T PRK10258 98 ------PLATATFDLAWSNLAVQWCGNLSTALRELYR 128 (251)
T ss_pred ------cCCCCcEEEEEECchhhhcCCHHHHHHHHHH
Confidence 113458999999998866 455555555544
No 49
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.30 E-value=1.5e-11 Score=98.97 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=60.9
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
++.|.+..+.....|.+++.+.....++ +|||+.||+|.+|+.+|+.+.+|+++|.++.+++.|++|++.|+
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 6778999999999999998887665444 89999999999999999999999999999999999999999997
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=1.8e-11 Score=91.52 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|.++++++.+++|+..++.. .++++...+.
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------~~v~~~~~d~ 133 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------GVVEVYHGDG 133 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------CcEEEEECCc
Confidence 4444544444446789999999999999888874 369999999999999999999887621 1344444443
Q ss_pred CCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 139 GNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.... ....+||+|+++..+.+
T Consensus 134 ~~~~-------~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 134 KRGL-------EKHAPFDAIIVTAAAST 154 (205)
T ss_pred ccCC-------ccCCCccEEEEccCcch
Confidence 3210 12358999999876543
No 51
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=93.10 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=73.1
Q ss_pred chHHHHHHHHhh---CCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274 57 PGAMLMNDYLSK---NPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL 131 (180)
Q Consensus 57 ~~~~~l~~~l~~---~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 131 (180)
|.++.+.+++.. +....++..+||+|||+|.+++.+++. ...|+++|.|+.++..|.+|++.+..+ ..+
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~------g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS------GRI 201 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc------Cce
Confidence 345556666543 333446668999999999999988764 368999999999999999999998743 456
Q ss_pred EEEEe----ecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274 132 AVAKL----EWGNSDQINKIIQKYPGGFDLILGADIYILYN 168 (180)
Q Consensus 132 ~~~~~----~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~ 168 (180)
.+.+. +|.... +...+++|++++||||...+
T Consensus 202 ~v~~~~me~d~~~~~------~l~~~~~dllvsNPPYI~~d 236 (328)
T KOG2904|consen 202 EVIHNIMESDASDEH------PLLEGKIDLLVSNPPYIRKD 236 (328)
T ss_pred EEEeccccccccccc------ccccCceeEEecCCCccccc
Confidence 66644 333321 12357999999999987743
No 52
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=3.5e-11 Score=90.55 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=64.9
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC---eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR---EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~---~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
..+...+.+.....++.+|||+|||+|..+..+++... +|+++|.++.+++.+++|++.++. .++.+...
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-------~~v~~~~~ 135 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-------DNVIVIVG 135 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-------CCeEEEEC
Confidence 33444444444455788999999999999999998743 599999999999999999998862 23445544
Q ss_pred ecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 137 EWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
+..... ....+||+|+++.+.
T Consensus 136 d~~~~~-------~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 136 DGTQGW-------EPLAPYDRIYVTAAG 156 (215)
T ss_pred CcccCC-------cccCCCCEEEEcCCc
Confidence 433211 123589999988654
No 53
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-11 Score=101.03 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred EEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274 27 TTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE 106 (180)
Q Consensus 27 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~ 106 (180)
++-.+.+.+|+|+ ++.|.+.+-..+++|..++..+.....++.+||+.||||.+|+++|+...+|+++++++
T Consensus 344 I~E~l~~ltF~iS--------p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~ 415 (534)
T KOG2187|consen 344 ITESLLGLTFRIS--------PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP 415 (534)
T ss_pred EEeecCCeEEEEC--------CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh
Confidence 3556677777776 77899999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030274 107 EVLKILKKNIEHHTS 121 (180)
Q Consensus 107 ~~l~~~~~n~~~n~~ 121 (180)
.+++.|+.|++.|+.
T Consensus 416 ~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 416 DAVEDAEKNAQINGI 430 (534)
T ss_pred hhcchhhhcchhcCc
Confidence 999999999999983
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=5e-11 Score=87.78 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||+|||+|..++.+++. +.+|+++|.++.+++.+++|++.++. .++++...+.... . .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l-------~~i~~~~~d~~~~-------~-~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL-------KNVTVVHGRAEEF-------G-Q 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC-------CCEEEEeccHhhC-------C-C
Confidence 4789999999999999988863 57999999999999999999999862 1244444433321 1 1
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
.++||+|+++.
T Consensus 110 ~~~fDlV~~~~ 120 (187)
T PRK00107 110 EEKFDVVTSRA 120 (187)
T ss_pred CCCccEEEEcc
Confidence 45899999975
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=2.4e-11 Score=93.50 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=57.5
Q ss_pred cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274 51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
||.-..+.+..+.+++.+.. .++.+|||+|||+|..++.+++.+. +|+++|+++.+++.+++|+..|+
T Consensus 98 fgtg~h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 45556778888888777653 3678999999999999999888875 59999999999999999999987
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=3e-11 Score=88.61 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=57.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||+|||+|.+++.+++.+ .+|+++|.++.+++.+++|++.++. .++.+...+..+. ..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-------~~i~~i~~d~~~~--------~~ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-------NNVEIVNGRAEDF--------QH 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-------CCeEEEecchhhc--------cc
Confidence 57899999999999999988653 6899999999999999999988762 2355555544331 12
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
.++||+|+++.
T Consensus 107 ~~~fD~I~s~~ 117 (181)
T TIGR00138 107 EEQFDVITSRA 117 (181)
T ss_pred cCCccEEEehh
Confidence 46899999876
No 57
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2e-11 Score=100.21 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=80.7
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
++.|.+.+-..++.|..+..+..+..++.++||+.||.|.+|+.+|+...+|+++|+++++++.|++|++.|+..
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~----- 341 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID----- 341 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-----
Confidence 346677777788999999888877667789999999999999999999999999999999999999999999822
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccc
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~ 163 (180)
...+.-+....+.... .....+|.|+..||
T Consensus 342 -----N~~f~~~~ae~~~~~~-~~~~~~d~VvvDPP 371 (432)
T COG2265 342 -----NVEFIAGDAEEFTPAW-WEGYKPDVVVVDPP 371 (432)
T ss_pred -----cEEEEeCCHHHHhhhc-cccCCCCEEEECCC
Confidence 2233333332221110 02357899999987
No 58
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.29 E-value=3e-11 Score=93.63 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=74.7
Q ss_pred eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274 54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA 132 (180)
Q Consensus 54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 132 (180)
.+-|.+..-...+.......++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++.... .++.
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~i~ 102 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------NKIE 102 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------CceE
Confidence 345555444555555555567889999999999988888764 679999999999999999876432 1344
Q ss_pred EEEeecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHHh
Q 030274 133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQA 179 (180)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~a 179 (180)
+...+.... +...++||+|++.+++++. +...+++.+.+.
T Consensus 103 ~~~~D~~~~-------~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~ 145 (263)
T PTZ00098 103 FEANDILKK-------DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKW 145 (263)
T ss_pred EEECCcccC-------CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHH
Confidence 554444321 1134689999999987663 444555554443
No 59
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.29 E-value=8.1e-11 Score=94.79 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=60.9
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
++.|.+........|.+++.+.... .+.+|||+|||+|.+++.+++...+|+++|.++++++.+++|++.|+
T Consensus 172 ~~~F~Q~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~ 243 (353)
T TIGR02143 172 ENSFTQPNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANN 243 (353)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 4567777777788888877765432 23479999999999999999988899999999999999999999997
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=2.3e-11 Score=88.25 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=62.8
Q ss_pred HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274 66 LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN 145 (180)
Q Consensus 66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (180)
+.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++|+... .++++...+..+..
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---------~~v~ii~~D~~~~~--- 72 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---------DNLTVIHGDALKFD--- 72 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---------CCEEEEECchhcCC---
Confidence 333333446679999999999999999988889999999999999999987542 13555555444331
Q ss_pred HHHhhCCCCCcEEEEcccccc
Q 030274 146 KIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 146 ~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
....+||+|+++.|++.
T Consensus 73 ----~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred ----ccccCCCEEEECCCccc
Confidence 11236999999988754
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=3.5e-11 Score=93.59 Aligned_cols=96 Identities=23% Similarity=0.338 Sum_probs=72.5
Q ss_pred cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
.|.++.+.+++.......++.+|||+|||+|.+++.+++.. .+|+++|+++.+++.+++|+.... ..++.+
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~-------~~~i~~ 162 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL-------GARVEF 162 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC-------CCcEEE
Confidence 45567788877654444467799999999999999998864 799999999999999999998221 234666
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
...++.... ..++||+|++++|+..
T Consensus 163 ~~~d~~~~~--------~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 163 LQGDWFEPL--------PGGRFDLIVSNPPYIP 187 (275)
T ss_pred EEccccCcC--------CCCceeEEEECCCcCC
Confidence 666664321 1368999999999764
No 62
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.27 E-value=1.6e-11 Score=89.65 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
.-.++||+|||.|.++..||..+.+++++|+++.+++.+++++... .++.+...+.... .+.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---------~~V~~~~~dvp~~--------~P~~ 105 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---------PHVEWIQADVPEF--------WPEG 105 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----------SSEEEEES-TTT-----------SS
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---------CCeEEEECcCCCC--------CCCC
Confidence 3458999999999999999999999999999999999999987653 2466666655443 1467
Q ss_pred CCcEEEEccccccCCch
Q 030274 154 GFDLILGADIYILYNRS 170 (180)
Q Consensus 154 ~fD~Ii~~d~~y~~~~~ 170 (180)
+||+|+.+.++|+-...
T Consensus 106 ~FDLIV~SEVlYYL~~~ 122 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDA 122 (201)
T ss_dssp -EEEEEEES-GGGSSSH
T ss_pred CeeEEEEehHhHcCCCH
Confidence 99999999999886543
No 63
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.27 E-value=2.5e-11 Score=78.90 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=60.7
Q ss_pred EEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcE
Q 030274 79 LELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDL 157 (180)
Q Consensus 79 LdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 157 (180)
||+|||+|..+..+++. +.+|+++|.++++++.++++....+ +.+...+..+. +...++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----------~~~~~~d~~~l-------~~~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----------VSFRQGDAEDL-------PFPDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----------EEEEESBTTSS-------SS-TT-EEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----------chheeehHHhC-------ccccccccc
Confidence 89999999999999998 8899999999999999999876654 33444444433 224679999
Q ss_pred EEEccccccC-CchhhHHHHHH
Q 030274 158 ILGADIYILY-NRSLLMTSFFQ 178 (180)
Q Consensus 158 Ii~~d~~y~~-~~~~l~~~~~~ 178 (180)
|+++.++++. +....++-+.+
T Consensus 64 v~~~~~~~~~~~~~~~l~e~~r 85 (95)
T PF08241_consen 64 VFSNSVLHHLEDPEAALREIYR 85 (95)
T ss_dssp EEEESHGGGSSHHHHHHHHHHH
T ss_pred cccccceeeccCHHHHHHHHHH
Confidence 9999998874 55555554443
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=7.5e-11 Score=91.12 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
+...-.+.+.+...+.+|++|||||||.|.+++.+|+. +.+|+++++|++..+.+++.+...+. ..++++.-.
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl------~~~v~v~l~ 129 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL------EDNVEVRLQ 129 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC------CcccEEEec
Confidence 33444555666677779999999999999999999987 79999999999999999999999873 346778888
Q ss_pred ecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 137 EWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+|.+.. ++||-|++-.++-+
T Consensus 130 d~rd~~----------e~fDrIvSvgmfEh 149 (283)
T COG2230 130 DYRDFE----------EPFDRIVSVGMFEH 149 (283)
T ss_pred cccccc----------cccceeeehhhHHH
Confidence 888753 45999999998866
No 65
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=7.6e-11 Score=93.22 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=64.3
Q ss_pred CCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 70 PDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 70 ~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
....++++|||+|||+|..+..++..+. .|+++|.|+.++..++....... ...++.+...+..+.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l------- 183 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL------- 183 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-------
Confidence 3445788999999999999888888774 79999999998876543322211 011233443332221
Q ss_pred hhCCCCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274 149 QKYPGGFDLILGADIYIL-YNRSLLMTSFFQAI 180 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~al 180 (180)
+ ...+||+|+++.++|| .+....+..+.++|
T Consensus 184 p-~~~~FD~V~s~gvL~H~~dp~~~L~el~r~L 215 (314)
T TIGR00452 184 H-ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQL 215 (314)
T ss_pred C-CCCCcCEEEEcchhhccCCHHHHHHHHHHhc
Confidence 1 1348999999999988 56556666665543
No 66
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=2.6e-11 Score=88.94 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=69.8
Q ss_pred cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274 56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK 135 (180)
Q Consensus 56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 135 (180)
++.+..+.+++.. .++++|||+|||+|..+..+++.+.+|+++|.++.+++.+++|+..++.+. .++.+..
T Consensus 9 ~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-----~~~~~~~ 79 (188)
T PRK14968 9 AEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN-----NGVEVIR 79 (188)
T ss_pred chhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCC-----cceEEEe
Confidence 4455666666653 366799999999999999999889999999999999999999998876321 1144444
Q ss_pred eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.++... + ...+||+|+++++++.
T Consensus 80 ~d~~~~-----~---~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 80 SDLFEP-----F---RGDKFDVILFNPPYLP 102 (188)
T ss_pred cccccc-----c---cccCceEEEECCCcCC
Confidence 444322 1 2337999999998765
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=7.6e-11 Score=98.52 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 72 VLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
..++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|....+ .++.+...++.... .
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--------~~v~~~~~d~~~~~-------~ 328 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--------CSVEFEVADCTKKT-------Y 328 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--------CceEEEEcCcccCC-------C
Confidence 346779999999999999988874 6799999999999999998875332 23555555554321 1
Q ss_pred CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
..++||+|++..++++ .+...+++.+.+.
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~ 358 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKW 358 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHH
Confidence 2458999999999877 5666666666554
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=2.7e-11 Score=92.87 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=71.0
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLA 132 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~ 132 (180)
.+|.+..+.+.+.+... ..+.+|||+|||+|..++.+++. ..+|+++|.++.+++.+++|+..++. .++.
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-------~~~~ 140 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-------DNVT 140 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CeEE
Confidence 34566666666655432 24568999999999999999986 46999999999999999999988762 1344
Q ss_pred EEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 133 VAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+...++... ....+||+|++++|++.
T Consensus 141 ~~~~d~~~~--------~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 141 FLQSDWFEP--------LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred EEECchhcc--------CcCCceeEEEECCCCCc
Confidence 555444331 12468999999999765
No 69
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.25 E-value=9.4e-11 Score=93.28 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=70.4
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
-|++..... .+..+....++++|||+|||+|..+..++..+. .|+++|.++.++..++......+ ...++.+
T Consensus 104 ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~------~~~~i~~ 176 (322)
T PRK15068 104 EWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG------NDQRAHL 176 (322)
T ss_pred eehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC------CCCCeEE
Confidence 355444322 223333335788999999999999999988774 69999999988765544322221 0123555
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
...+..+. + ...+||+|++..++|+ .+...+++.+.+.
T Consensus 177 ~~~d~e~l-------p-~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~ 215 (322)
T PRK15068 177 LPLGIEQL-------P-ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQ 215 (322)
T ss_pred EeCCHHHC-------C-CcCCcCEEEECChhhccCCHHHHHHHHHHh
Confidence 54433321 1 1568999999999988 5566666666554
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.25 E-value=8.6e-11 Score=91.37 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=72.9
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
+.....+.+.+...+.+|.+|||||||.|.+++.+|+. |.+|+++.+|++..+.+++.+...++ ..++.+...
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl------~~~v~v~~~ 119 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL------EDRVEVRLQ 119 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS------SSTEEEEES
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEe
Confidence 33556667777777789999999999999999999987 99999999999999999999998873 345667666
Q ss_pred ecCCCchhhHHHhhCCCCCcEEEEccccccC---CchhhHHHHHH
Q 030274 137 EWGNSDQINKIIQKYPGGFDLILGADIYILY---NRSLLMTSFFQ 178 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~---~~~~l~~~~~~ 178 (180)
+|.+. ..+||.|++-.++-+- +....++.+.+
T Consensus 120 D~~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~ 154 (273)
T PF02353_consen 120 DYRDL----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISR 154 (273)
T ss_dssp -GGG-------------S-SEEEEESEGGGTCGGGHHHHHHHHHH
T ss_pred ecccc----------CCCCCEEEEEechhhcChhHHHHHHHHHHH
Confidence 66542 3499999999998774 33444554443
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.25 E-value=1.5e-10 Score=87.73 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=60.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++...+.. .++.+...++.. ..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~------~~i~~~~~d~~~----------~~~ 126 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA------GNITFEVGDLES----------LLG 126 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc------cCcEEEEcCchh----------ccC
Confidence 5679999999999999999988889999999999999999998776421 134444433221 246
Q ss_pred CCcEEEEcccccc
Q 030274 154 GFDLILGADIYIL 166 (180)
Q Consensus 154 ~fD~Ii~~d~~y~ 166 (180)
+||+|+++.++++
T Consensus 127 ~fD~v~~~~~l~~ 139 (230)
T PRK07580 127 RFDTVVCLDVLIH 139 (230)
T ss_pred CcCEEEEcchhhc
Confidence 8999999998855
No 72
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=93.29 Aligned_cols=125 Identities=15% Similarity=0.008 Sum_probs=87.9
Q ss_pred EEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCH
Q 030274 28 TFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNE 106 (180)
Q Consensus 28 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~ 106 (180)
.+.-.+..+.+.. ..+-.||..++ -.....++.... +|++||++.|-||.+|+.+|..|+ +|+.+|.|.
T Consensus 181 ~i~E~g~kf~v~~-----~~g~kTGfFlD--qR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~ 250 (393)
T COG1092 181 VIEENGVKFLVDL-----VDGLKTGFFLD--QRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK 250 (393)
T ss_pred EEEeCCeEEEEec-----CCcccceeeHH--hHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccH
Confidence 3444455555442 22334564333 333444454443 589999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh--CCCCCcEEEEccccccCCchhh
Q 030274 107 EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK--YPGGFDLILGADIYILYNRSLL 172 (180)
Q Consensus 107 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~~d~~y~~~~~~l 172 (180)
.+++.+++|++.|+.. -....|...|.+..+... ...+||+||..||-|-......
T Consensus 251 ~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~ 308 (393)
T COG1092 251 RALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQE 308 (393)
T ss_pred HHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccc
Confidence 9999999999999832 455677777766555332 3459999999999887544443
No 73
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=101.57 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++++|||+|||+|.+++.+++.|+ +|+++|.|+.+++.+++|++.|+... .++++...+. +.. +....
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-----~~v~~i~~D~-----~~~-l~~~~ 606 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-----RQHRLIQADC-----LAW-LKEAR 606 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-----cceEEEEccH-----HHH-HHHcC
Confidence 578999999999999999998875 69999999999999999999997320 1333443332 221 12225
Q ss_pred CCCcEEEEccccccC
Q 030274 153 GGFDLILGADIYILY 167 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~~ 167 (180)
.+||+|+++||.+-.
T Consensus 607 ~~fDlIilDPP~f~~ 621 (702)
T PRK11783 607 EQFDLIFIDPPTFSN 621 (702)
T ss_pred CCcCEEEECCCCCCC
Confidence 689999999998763
No 74
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.24 E-value=7.8e-11 Score=90.90 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred HhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 66 LSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+.......++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. +.+...+....
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~------------~~~~~~d~~~~-- 88 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD------------CQFVEADIASW-- 88 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC------------CeEEECchhcc--
Confidence 333333446789999999999999988875 57999999999999999887421 22333222211
Q ss_pred hhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 144 INKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
....+||+|+++.++.+ .+...+++.+..+
T Consensus 89 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~ 119 (258)
T PRK01683 89 ------QPPQALDLIFANASLQWLPDHLELFPRLVSL 119 (258)
T ss_pred ------CCCCCccEEEEccChhhCCCHHHHHHHHHHh
Confidence 12358999999999866 5655666666554
No 75
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.23 E-value=6.8e-11 Score=91.19 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=62.6
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 72 VLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++ + +.+...+... +
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----------~~~~~~d~~~------~-- 84 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----------VDARTGDVRD------W-- 84 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----------CcEEEcChhh------C--
Confidence 346789999999999999998876 67999999999999998763 2 2233322211 1
Q ss_pred hCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 150 KYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
...++||+|+++.++++ .+...++..+.+.
T Consensus 85 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~ 115 (255)
T PRK14103 85 KPKPDTDVVVSNAALQWVPEHADLLVRWVDE 115 (255)
T ss_pred CCCCCceEEEEehhhhhCCCHHHHHHHHHHh
Confidence 12458999999999877 5656666665544
No 76
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.1e-10 Score=86.26 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=51.9
Q ss_pred ecchHHHHHHHHhhCC-CCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274 55 VWPGAMLMNDYLSKNP-DVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~-~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.-|....+-+.+.... ...++.+||||+||+|.+|+.++..|+ +|+++|.++.+++.+++|++.++
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~ 96 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK 96 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4555544444333221 224688999999999999999998875 89999999999999999999997
No 77
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.23 E-value=6.1e-13 Score=87.97 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=53.6
Q ss_pred EEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274 79 LELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD 156 (180)
Q Consensus 79 LdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 156 (180)
||+|||+|..+..+... ..+++++|+|+.+++.+++++..... .....+.+...+.... ...++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN---------DNFERLRFDVLDLFDY---DPPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C---CC----S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---------cceeEEEeecCChhhc---ccccccc
Confidence 79999999998888776 68999999999999999888887641 1133444444332111 1225999
Q ss_pred EEEEcccccc-CCchhhHHHHHH
Q 030274 157 LILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 157 ~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
+|+++.++++ .+....+..+.+
T Consensus 69 ~V~~~~vl~~l~~~~~~l~~~~~ 91 (99)
T PF08242_consen 69 LVVASNVLHHLEDIEAVLRNIYR 91 (99)
T ss_dssp EEEEE-TTS--S-HHHHHHHHTT
T ss_pred eehhhhhHhhhhhHHHHHHHHHH
Confidence 9999999988 455555555543
No 78
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=2.9e-10 Score=86.27 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=64.1
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++|+..++. .++.+...+.....
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~~------- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-------HNVELVHGNAMELP------- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-------CceEEEEechhcCC-------
Confidence 36789999999999999988864 36999999999999999999877641 23444443333211
Q ss_pred hCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274 150 KYPGGFDLILGADIYIL-YNRSLLMTSFF 177 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~ 177 (180)
...++||+|+++.++.+ .+...++..+.
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~ 138 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLREMY 138 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHH
Confidence 12468999999887655 44444444433
No 79
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.21 E-value=2.2e-10 Score=87.08 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=73.0
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS 141 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
..+++.......++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++++..++. .+.+...++...
T Consensus 36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 107 (233)
T PRK05134 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--------KIDYRQTTAEEL 107 (233)
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--------ceEEEecCHHHh
Confidence 345666555455788999999999999999998888999999999999999999877641 233333322211
Q ss_pred chhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 142 DQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 142 ~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
.....++||+|+++.++.+ .+...++..+..
T Consensus 108 ------~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~ 139 (233)
T PRK05134 108 ------AAEHPGQFDVVTCMEMLEHVPDPASFVRACAK 139 (233)
T ss_pred ------hhhcCCCccEEEEhhHhhccCCHHHHHHHHHH
Confidence 1123468999999988766 455555554443
No 80
>PRK06202 hypothetical protein; Provisional
Probab=99.21 E-value=2e-10 Score=87.34 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=57.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhc----C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCSRF----C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~----~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
++.+|||+|||+|..+..+++. | .+|+++|.++.+++.++++...++ +.+...+-.. +
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~---l--- 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------VTFRQAVSDE---L--- 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------CeEEEEeccc---c---
Confidence 5679999999999988887752 3 599999999999999998865443 2233222211 1
Q ss_pred HhhCCCCCcEEEEccccccCCch
Q 030274 148 IQKYPGGFDLILGADIYILYNRS 170 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~d~~y~~~~~ 170 (180)
+...++||+|+++.++++-...
T Consensus 124 -~~~~~~fD~V~~~~~lhh~~d~ 145 (232)
T PRK06202 124 -VAEGERFDVVTSNHFLHHLDDA 145 (232)
T ss_pred -cccCCCccEEEECCeeecCChH
Confidence 1134689999999998875443
No 81
>PHA03412 putative methyltransferase; Provisional
Probab=99.20 E-value=3.1e-11 Score=91.03 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhc-----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGVGVTGILCSRF-----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~-----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+.. +.+...+....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------------~~~~~~D~~~~------- 109 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------------ATWINADALTT------- 109 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------------CEEEEcchhcc-------
Confidence 4679999999999999988763 35899999999999999988532 22333332221
Q ss_pred hhCCCCCcEEEEcccccc
Q 030274 149 QKYPGGFDLILGADIYIL 166 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~y~ 166 (180)
....+||+||+|||++.
T Consensus 110 -~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 110 -EFDTLFDMAISNPPFGK 126 (241)
T ss_pred -cccCCccEEEECCCCCC
Confidence 12458999999999986
No 82
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=5.5e-10 Score=76.25 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=59.4
Q ss_pred HhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 66 LSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+.......++.+|||+|||+|..+..+++. +.+|+++|.++.+++.+++|++.++. .++.+...+....
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~-- 81 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-------SNIVIVEGDAPEA-- 81 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-------CceEEEecccccc--
Confidence 333333345679999999999999998875 36999999999999999999988752 1233333322211
Q ss_pred hhHHHhhCCCCCcEEEEccc
Q 030274 144 INKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~ 163 (180)
. .....+||+|++..+
T Consensus 82 ~----~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 82 L----EDSLPEPDRVFIGGS 97 (124)
T ss_pred C----hhhcCCCCEEEECCc
Confidence 0 112358999998754
No 83
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=89.42 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=68.2
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
...+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++... .++.+...+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---------~~v~ii~~D~ 84 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---------GNVEIIEGDA 84 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---------CCEEEEEecc
Confidence 3445555555555557789999999999999999998889999999999999999887542 1355555554
Q ss_pred CCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 139 GNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
...+ ...||.|++|.|++..
T Consensus 85 ~~~~---------~~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 LKVD---------LPEFNKVVSNLPYQIS 104 (258)
T ss_pred ccCC---------chhceEEEEcCCcccC
Confidence 4321 1358999999997763
No 84
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.20 E-value=1.1e-10 Score=77.53 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=55.0
Q ss_pred EEEeCCcCChHHHHHhhcC-----CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 78 ILELGSGVGVTGILCSRFC-----REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 78 vLdlG~G~G~~~l~la~~~-----~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
|||+|||+|.....+++.. .+++++|+++++++.++++....+ .++++...++.+. +...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--------~~~~~~~~D~~~l-------~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--------PKVRFVQADARDL-------PFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--------TTSEEEESCTTCH-------HHHS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--------CceEEEECCHhHC-------cccC
Confidence 7999999999999888763 799999999999999999988754 1455666666442 1235
Q ss_pred CCCcEEEEccc-cccCC
Q 030274 153 GGFDLILGADI-YILYN 168 (180)
Q Consensus 153 ~~fD~Ii~~d~-~y~~~ 168 (180)
++||+|+++.. +.+..
T Consensus 66 ~~~D~v~~~~~~~~~~~ 82 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLS 82 (101)
T ss_dssp SSEEEEEE-TTGGGGSS
T ss_pred CCeeEEEEcCCccCCCC
Confidence 69999999655 55543
No 85
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.18 E-value=3e-10 Score=88.46 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=78.5
Q ss_pred eEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEec
Q 030274 25 QLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTD 103 (180)
Q Consensus 25 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D 103 (180)
....+...|..+.|.. .+...||..+- -.....++.+.. ++++||++.|-||.+|+.+++.|+ +|+.+|
T Consensus 84 ~~~~v~E~gl~f~v~l-----~~gqktGlFlD--qR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD 153 (286)
T PF10672_consen 84 EFFTVEENGLKFRVDL-----TDGQKTGLFLD--QRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVD 153 (286)
T ss_dssp SEEEEEETTEEEEEES-----SSSSSTSS-GG--GHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEE
T ss_pred CceEEEECCEEEEEEc-----CCCCcceEcHH--HHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEe
Confidence 3445667777776653 22334565333 333445555543 688999999999999999988885 899999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-hCCCCCcEEEEccccccCCc
Q 030274 104 HNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-KYPGGFDLILGADIYILYNR 169 (180)
Q Consensus 104 ~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~ 169 (180)
.|..+++.+++|+..|+.. ..++.+. ..+.+..+.. ...++||+||+.||-|-...
T Consensus 154 ~S~~al~~a~~N~~lNg~~-----~~~~~~~-----~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~ 210 (286)
T PF10672_consen 154 SSKRALEWAKENAALNGLD-----LDRHRFI-----QGDVFKFLKRLKKGGRFDLIILDPPSFAKSK 210 (286)
T ss_dssp S-HHHHHHHHHHHHHTT-C-----CTCEEEE-----ES-HHHHHHHHHHTT-EEEEEE--SSEESST
T ss_pred CCHHHHHHHHHHHHHcCCC-----ccceEEE-----ecCHHHHHHHHhcCCCCCEEEECCCCCCCCH
Confidence 9999999999999999842 1223333 3333332211 12458999999999876443
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=3e-10 Score=85.35 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274 59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK 135 (180)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 135 (180)
+..+...+.+.....++.+|||+|||+|..+..+++.. .+|+++|.++++++.+++|++.++. .++.+..
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-------~~v~~~~ 133 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-------DNVEVIV 133 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCeEEEE
Confidence 34444555554455578899999999999999888752 6999999999999999999998762 2344444
Q ss_pred eecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 136 LEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.+-.... ....+||+|++.-..
T Consensus 134 gd~~~~~-------~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 134 GDGTLGY-------EENAPYDRIYVTAAG 155 (212)
T ss_pred CCcccCC-------CcCCCcCEEEECCCc
Confidence 3322110 123689999887543
No 87
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.18 E-value=4.9e-10 Score=86.77 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++.+|||+|||+|..+..+++. + .+|+++|+|++|++.++++....... ...++.+...+.... +
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~----~~~~i~~~~~d~~~l-------p 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS----CYKNIEWIEGDATDL-------P 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc----cCCCeEEEEcccccC-------C
Confidence 46779999999999999988875 3 59999999999999998876421100 012344444443321 1
Q ss_pred hCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 150 KYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
...++||+|+++.++.+ .+....++.+.+.
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv 171 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRV 171 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHH
Confidence 23568999999998776 4555555555443
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.18 E-value=2e-10 Score=91.77 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=69.0
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
..++..+.......++.+|||+|||+|.+.+.++..+.+|+++|+++.++..++.|++.++.. ++.+...+..
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-------~i~~~~~D~~ 240 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-------DFFVKRGDAT 240 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-------CCeEEecchh
Confidence 456666665544557789999999999999988888999999999999999999999988632 1333333332
Q ss_pred CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 140 NSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+. +....+||+|+++||+-.
T Consensus 241 ~l-------~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 241 KL-------PLSSESVDAIATDPPYGR 260 (329)
T ss_pred cC-------CcccCCCCEEEECCCCcC
Confidence 21 112468999999998643
No 89
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=3.2e-10 Score=83.49 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=57.1
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 71 DVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
...++.+|||+|||+|.+++.+++.+ .+|+++|.++.+++.+++|++.++. .++.+...+ .. .
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-------~~i~~~~~d---~~--~--- 92 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-------GNIDIIPGE---AP--I--- 92 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCeEEEecC---ch--h---
Confidence 33467899999999999999988763 6999999999999999999988752 123333322 11 0
Q ss_pred hhCCCCCcEEEEccc
Q 030274 149 QKYPGGFDLILGADI 163 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~ 163 (180)
....+||+|+++..
T Consensus 93 -~~~~~~D~v~~~~~ 106 (187)
T PRK08287 93 -ELPGKADAIFIGGS 106 (187)
T ss_pred -hcCcCCCEEEECCC
Confidence 12457999998754
No 90
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.17 E-value=1.9e-10 Score=82.69 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=71.4
Q ss_pred cCCcCceecchH---HHHHHHHhhCCC---CCCCC-eEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH
Q 030274 48 FDLTGQLVWPGA---MLMNDYLSKNPD---VLQAS-SILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 48 ~~~~g~~~w~~~---~~l~~~l~~~~~---~~~~~-~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
++..|- +|.+. ..+.+||..+.. ..+.. +|||||||.|.+-.-|++.+ .+.+++|+++.++++|+..++.
T Consensus 35 hgd~GE-vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~ 113 (227)
T KOG1271|consen 35 HGDEGE-VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER 113 (227)
T ss_pred CCCccc-eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh
Confidence 555554 77655 678888876543 22333 99999999999988888876 4699999999999999877777
Q ss_pred hcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEE
Q 030274 119 HTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLIL 159 (180)
Q Consensus 119 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii 159 (180)
++.+ ..+++.+++...++- ..++||+|+
T Consensus 114 ~~~~------n~I~f~q~DI~~~~~-------~~~qfdlvl 141 (227)
T KOG1271|consen 114 DGFS------NEIRFQQLDITDPDF-------LSGQFDLVL 141 (227)
T ss_pred cCCC------cceeEEEeeccCCcc-------cccceeEEe
Confidence 7632 237788888777532 234566554
No 91
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=4.8e-10 Score=86.13 Aligned_cols=91 Identities=10% Similarity=0.200 Sum_probs=63.9
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++.+|||+|||+|..++.+++ .+.+|+++|.|+.|++.+++++..++. ..++.+...+....
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~------~~~v~~~~~d~~~~-------- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------PTPVDVIEGDIRDI-------- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------CCCeEEEeCChhhC--------
Confidence 567999999999999887776 257999999999999999999987652 12344544333321
Q ss_pred hCCCCCcEEEEccccccCCc---hhhHHHHHHh
Q 030274 150 KYPGGFDLILGADIYILYNR---SLLMTSFFQA 179 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~~~~---~~l~~~~~~a 179 (180)
....+|+|+++-++++-.. ..+++.+.++
T Consensus 122 -~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~ 153 (247)
T PRK15451 122 -AIENASMVVLNFTLQFLEPSERQALLDKIYQG 153 (247)
T ss_pred -CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHh
Confidence 1246999999988766332 3444544443
No 92
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=2.5e-10 Score=86.55 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||+|||||-+++.+++.. .+|+++|+|+.|++.+++.+...+. ....+.-++.+. ++..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----------~~i~fv~~dAe~----LPf~ 116 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----------QNVEFVVGDAEN----LPFP 116 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----------cceEEEEechhh----CCCC
Confidence 78899999999999999999875 7999999999999999999887641 112233333333 2346
Q ss_pred CCCCcEEEEcccccc-CCchhhHHHH
Q 030274 152 PGGFDLILGADIYIL-YNRSLLMTSF 176 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~ 176 (180)
+.+||+|.++-.+-+ .+....++-+
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~ 142 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEM 142 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHH
Confidence 789999999998876 4544444433
No 93
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-10 Score=90.88 Aligned_cols=100 Identities=13% Similarity=0.262 Sum_probs=74.1
Q ss_pred HHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 65 YLSKNPDVLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
.+.++...+++++|||+|||||++++..|+.|+ +|+++|.+ ++.+.+++.+..|+.. ..+++.+- ..++
T Consensus 51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S-~ia~~a~~iv~~N~~~------~ii~vi~g---kvEd 120 (346)
T KOG1499|consen 51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEAS-SIADFARKIVKDNGLE------DVITVIKG---KVED 120 (346)
T ss_pred HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEech-HHHHHHHHHHHhcCcc------ceEEEeec---ceEE
Confidence 355666778999999999999999999999985 89999997 5679999999999843 22334333 2222
Q ss_pred hhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274 144 INKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ 178 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~ 178 (180)
+ . + +..+.|+|++-.+-|..-.+..+++++-
T Consensus 121 i-~-L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~ 151 (346)
T KOG1499|consen 121 I-E-L--PVEKVDIIVSEWMGYFLLYESMLDSVLY 151 (346)
T ss_pred E-e-c--CccceeEEeehhhhHHHHHhhhhhhhhh
Confidence 2 1 1 2479999999999888655555665543
No 94
>PRK08317 hypothetical protein; Provisional
Probab=99.16 E-value=6.9e-10 Score=84.07 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
|-...+.+.+.......++.+|||+|||+|..+..+++. ..+|+++|.++.+++.++++..... .++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--------~~~~~ 73 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--------PNVEF 73 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--------CceEE
Confidence 344445555555555557789999999999999988864 3699999999999999998833221 23444
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
...+..... ...++||+|+++.++.+ .+...+++.+.++
T Consensus 74 ~~~d~~~~~-------~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~ 113 (241)
T PRK08317 74 VRGDADGLP-------FPDGSFDAVRSDRVLQHLEDPARALAEIARV 113 (241)
T ss_pred EecccccCC-------CCCCCceEEEEechhhccCCHHHHHHHHHHH
Confidence 444433221 12468999999998765 5655566655543
No 95
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.16 E-value=1.7e-10 Score=89.79 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=65.9
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN 140 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~ 140 (180)
.+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.+++|+... ++.+...++..
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~----------~v~~i~~D~~~ 98 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAED----------NLTIIEGDALK 98 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccC----------ceEEEEChhhc
Confidence 34555555545557789999999999999999998889999999999999999876431 35566666554
Q ss_pred CchhhHHHhhCCCCCcEEEEcccccc
Q 030274 141 SDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.+ +. ...++.|++|.|+|.
T Consensus 99 ~~-~~------~~~~~~vv~NlPY~i 117 (272)
T PRK00274 99 VD-LS------ELQPLKVVANLPYNI 117 (272)
T ss_pred CC-HH------HcCcceEEEeCCccc
Confidence 32 11 111699999999766
No 96
>PHA03411 putative methyltransferase; Provisional
Probab=99.15 E-value=1.8e-10 Score=88.76 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=62.6
Q ss_pred cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
.|...-|.+.. ..++... ....+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|+.
T Consensus 45 ~G~FfTP~~i~-~~f~~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------- 109 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTIDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------- 109 (279)
T ss_pred ceeEcCCHHHH-HHHHhcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------
Confidence 35555555543 2344322 13468999999999999888764 4699999999999999998732
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYN 168 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~ 168 (180)
++.+...+... . ....+||+|+++||+++..
T Consensus 110 -~v~~v~~D~~e------~--~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 110 -EAEWITSDVFE------F--ESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred -CCEEEECchhh------h--cccCCCcEEEEcCCccccC
Confidence 12232222221 1 1235899999999998743
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.15 E-value=6.1e-10 Score=83.60 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=63.9
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS 141 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
+..++.......++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++|++.++. .++.+...+....
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-------~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-------HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-------CceEEEECCcccC
Confidence 444444444445778999999999999998888877999999999999999999988752 1244444433221
Q ss_pred chhhHHHhhCCCCCcEEEEcccc
Q 030274 142 DQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 142 ~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
. ...++||+|++....
T Consensus 139 --~-----~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 139 --W-----PAYAPFDRILVTAAA 154 (212)
T ss_pred --C-----CcCCCcCEEEEccCc
Confidence 0 013589999987654
No 98
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.15 E-value=6e-10 Score=84.82 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=61.4
Q ss_pred eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274 54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130 (180)
Q Consensus 54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~ 130 (180)
+.|.. .+.+.+. ..++.+|||+|||||.++..+++. + .+|+++|+|+.|++.+++++...+. .+
T Consensus 33 ~~wr~--~~~~~~~----~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-------~~ 99 (233)
T PF01209_consen 33 RRWRR--KLIKLLG----LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-------QN 99 (233)
T ss_dssp ----S--HHHHHHT------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------S
T ss_pred HHHHH--HHHhccC----CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-------CC
Confidence 46766 4444432 236779999999999999988875 3 6999999999999999999988751 13
Q ss_pred EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHH
Q 030274 131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSF 176 (180)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~ 176 (180)
+.....+-.+ ++...++||+|+++-.+.+ .+....++-+
T Consensus 100 i~~v~~da~~-------lp~~d~sfD~v~~~fglrn~~d~~~~l~E~ 139 (233)
T PF01209_consen 100 IEFVQGDAED-------LPFPDNSFDAVTCSFGLRNFPDRERALREM 139 (233)
T ss_dssp EEEEE-BTTB---------S-TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred eeEEEcCHHH-------hcCCCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence 4444333332 2234679999999998866 4544444433
No 99
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.15 E-value=4.6e-10 Score=84.69 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.++.+|||+|||+|..+..+++.+.+|+++|.++.+++.+++++..++. .++.+...+... ......
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~~~~~~d~~~------~~~~~~ 110 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-------LKIEYRCTSVED------LAEKGA 110 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------CceEEEeCCHHH------hhcCCC
Confidence 4578999999999999999888888999999999999999999887651 012232222211 111123
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
++||+|+++.++++ .+...+++.+.+
T Consensus 111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~ 137 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQAFIRACAQ 137 (224)
T ss_pred CCccEEEehhHHHhCCCHHHHHHHHHH
Confidence 68999999998876 455555554443
No 100
>PRK05785 hypothetical protein; Provisional
Probab=99.14 E-value=5.2e-10 Score=84.83 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++.+|||+|||||..+..+++. +.+|+++|.|++|++.++++. . ....+... ++...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---~------------~~~~d~~~-------lp~~d 108 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---D------------KVVGSFEA-------LPFRD 108 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---c------------eEEechhh-------CCCCC
Confidence 3569999999999999999887 579999999999999988641 1 12222221 12235
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
++||+|+++..+.+ .+....++.+.+
T Consensus 109 ~sfD~v~~~~~l~~~~d~~~~l~e~~R 135 (226)
T PRK05785 109 KSFDVVMSSFALHASDNIEKVIAEFTR 135 (226)
T ss_pred CCEEEEEecChhhccCCHHHHHHHHHH
Confidence 78999999998866 455555555443
No 101
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.14 E-value=3.2e-10 Score=89.00 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=69.4
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN 140 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~ 140 (180)
.+.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++..++. ..++.+..-|+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~------~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL------ASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC------CCcEEEEECCHhh
Confidence 3455555555555778999999999999999998888999999999999999999876541 1245555544433
Q ss_pred CchhhHHHhhCCCCCcEEEEccccccCC
Q 030274 141 SDQINKIIQKYPGGFDLILGADIYILYN 168 (180)
Q Consensus 141 ~~~~~~~~~~~~~~fD~Ii~~d~~y~~~ 168 (180)
. ....||.|++|.|+|...
T Consensus 97 ~---------~~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 97 T---------EFPYFDVCVANVPYQISS 115 (294)
T ss_pred h---------cccccCEEEecCCcccCc
Confidence 2 124689999999888743
No 102
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.14 E-value=2e-10 Score=81.96 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=60.7
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.++.+|||+|||+|..+..+++.+.+|+++|+++.+++. .+ .......-.. .....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-----------~~~~~~~~~~-------~~~~~ 76 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-----------VVFDNFDAQD-------PPFPD 76 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-----------SEEEEEECHT-------HHCHS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-----------hhhhhhhhhh-------hhccc
Confidence 467899999999999999999889999999999998888 21 1112111111 11235
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
++||+|+++.++++ .+....++.+.+.
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~ 104 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRL 104 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHC
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHh
Confidence 79999999999988 5666666666553
No 103
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.13 E-value=4.8e-10 Score=84.68 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=66.4
Q ss_pred CeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 76 SSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+. ..++.+...+..... ..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl------~~~i~~~~~d~~~~~--------~~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL------QGRIRIFYRDSAKDP--------FPD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------CcceEEEecccccCC--------CCC
Confidence 47999999999999888875 36999999999999999999987652 234555555543321 235
Q ss_pred CCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 154 GFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
+||+|++..++++ .+....++.+.+.
T Consensus 67 ~fD~I~~~~~l~~~~~~~~~l~~~~~~ 93 (224)
T smart00828 67 TYDLVFGFEVIHHIKDKMDLFSNISRH 93 (224)
T ss_pred CCCEeehHHHHHhCCCHHHHHHHHHHH
Confidence 8999999998877 4555555555443
No 104
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.13 E-value=1e-10 Score=85.87 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=69.6
Q ss_pred ceecchHHHHHHHHhhCCC--CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274 53 QLVWPGAMLMNDYLSKNPD--VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129 (180)
Q Consensus 53 ~~~w~~~~~l~~~l~~~~~--~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~ 129 (180)
..+-|.+..+-+.+-.... ..++.++|||.||||.+|+.+...| .+|+++|.++.++..+++|++..+.. .
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------~ 92 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------D 92 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------G
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------c
Confidence 3455666555444433221 1588999999999999999776665 69999999999999999999987622 1
Q ss_pred cEEEEEeecCCCchhhHHHh--hCCCCCcEEEEccccccCCc-hhhHHHHH
Q 030274 130 GLAVAKLEWGNSDQINKIIQ--KYPGGFDLILGADIYILYNR-SLLMTSFF 177 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~d~~y~~~~-~~l~~~~~ 177 (180)
++.+...+ ....+.. ....+||+|++.||+..... ..++..+.
T Consensus 93 ~~~v~~~d-----~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 93 KIRVIKGD-----AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp GEEEEESS-----HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred ceeeeccC-----HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 23333222 1222211 24679999999999877553 55565554
No 105
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.13 E-value=8.1e-10 Score=85.95 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 72 VLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..++.+|||+|||+|..++.+++. + .+|+++|.++.+++.+++|....+. .++.+...++...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-------~~v~~~~~d~~~l------- 140 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-------TNVEFRLGEIEAL------- 140 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-------CCEEEEEcchhhC-------
Confidence 347789999999999988877664 3 4799999999999999999887752 1344443333221
Q ss_pred hhCCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 149 QKYPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
+...++||+|+++.++++ .+....++.+.+.
T Consensus 141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~ 172 (272)
T PRK11873 141 PVADNSVDVIISNCVINLSPDKERVFKEAFRV 172 (272)
T ss_pred CCCCCceeEEEEcCcccCCCCHHHHHHHHHHH
Confidence 113458999999988766 3444555555443
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.11 E-value=7.8e-10 Score=89.98 Aligned_cols=84 Identities=14% Similarity=0.250 Sum_probs=61.7
Q ss_pred HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274 64 DYLSKNPDVLQASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD 142 (180)
Q Consensus 64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
..+.+.....++.+|||+|||+|..++.+++. +.+|+++|+|+++++.+++++... .+.+...++..
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----------~v~~~~~D~~~-- 224 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----------PVEIRLQDYRD-- 224 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----------eEEEEECchhh--
Confidence 34444444557889999999999999988875 789999999999999999987421 13333333321
Q ss_pred hhhHHHhhCCCCCcEEEEccccccC
Q 030274 143 QINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 143 ~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
..++||.|++..++.+-
T Consensus 225 --------l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 225 --------LNGQFDRIVSVGMFEHV 241 (383)
T ss_pred --------cCCCCCEEEEeCchhhC
Confidence 14689999999987763
No 107
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.09 E-value=3e-09 Score=79.07 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=58.3
Q ss_pred CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274 70 PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK 146 (180)
Q Consensus 70 ~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
....++.+|||+|||+|.+++.+++. +.+|+++|.++.+++.+++|+..++. ..++.+...+..+
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~------~~~v~~~~~d~~~------ 103 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV------LNNIVLIKGEAPE------ 103 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCCeEEEEechhh------
Confidence 34557889999999999999988764 36899999999999999999998862 1234444333221
Q ss_pred HHhhCCCCCcEEEEcc
Q 030274 147 IIQKYPGGFDLILGAD 162 (180)
Q Consensus 147 ~~~~~~~~fD~Ii~~d 162 (180)
..+....+||.|+++.
T Consensus 104 ~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 104 ILFTINEKFDRIFIGG 119 (198)
T ss_pred hHhhcCCCCCEEEECC
Confidence 1122345899999853
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.09 E-value=2e-09 Score=81.64 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++.+|||+|||+|..+..+++.+ .+|+++|.++.+++.+++++..++. ..++.+...++.... .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~-------~ 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL------SGNVEFVQGDAEALP-------F 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc------ccCeEEEecccccCC-------C
Confidence 56799999999999999888764 7999999999999999999876431 123445554444321 1
Q ss_pred CCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 151 YPGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
..+.||+|+++.++.+ .+...++..+..
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~ 146 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDIDKALREMYR 146 (239)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHH
Confidence 2468999999887655 444455554443
No 109
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.08 E-value=8.6e-10 Score=82.26 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=57.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.+.+|||+|||+|..+..+++. +.+|+++|.++.+++.+++|+..++. .++.+...++. +.+... ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-------~~v~~~~~d~~--~~l~~~--~~ 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-------TNLRLLCGDAV--EVLLDM--FP 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-------CCEEEEecCHH--HHHHHH--cC
Confidence 4679999999999999988875 46899999999999999999988752 23444443330 111110 23
Q ss_pred CCCCcEEEEccc
Q 030274 152 PGGFDLILGADI 163 (180)
Q Consensus 152 ~~~fD~Ii~~d~ 163 (180)
.++||+|+++.+
T Consensus 109 ~~~~D~V~~~~~ 120 (202)
T PRK00121 109 DGSLDRIYLNFP 120 (202)
T ss_pred ccccceEEEECC
Confidence 568999998754
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.07 E-value=1.9e-10 Score=86.05 Aligned_cols=118 Identities=18% Similarity=0.287 Sum_probs=72.8
Q ss_pred cccCCCceEEEEEECCeEEEEEeeeccCCCcCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-C
Q 030274 18 FFINDDYQLTTFTFGSQVLHLFCLQSASTDFDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-C 96 (180)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~ 96 (180)
.|++..+. ...+.+..+.|.. |..+ ++..+...+.+.....++.+|||||||+|+.+..+++. +
T Consensus 31 ~Fvp~~~~--~~aY~d~~l~i~~-----------~~~i--s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg 95 (209)
T PF01135_consen 31 DFVPPAFR--DLAYEDRPLPIGC-----------GQTI--SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVG 95 (209)
T ss_dssp GCSSCGGG--GGTTSSS-EEEET-----------TEEE----HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHS
T ss_pred HhCchhhh--cCCCCCCCeeecc-----------eeec--hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcC
Confidence 45555544 3445566676662 2211 22223333344444568899999999999999999986 3
Q ss_pred --CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 97 --REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 97 --~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.+|+++|.++.+.+.|++|+...+. .++.+...+-... + ....+||.|+.+-.+
T Consensus 96 ~~g~Vv~vE~~~~l~~~A~~~l~~~~~-------~nv~~~~gdg~~g-----~--~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 96 PVGRVVSVERDPELAERARRNLARLGI-------DNVEVVVGDGSEG-----W--PEEAPFDRIIVTAAV 151 (209)
T ss_dssp TTEEEEEEESBHHHHHHHHHHHHHHTT-------HSEEEEES-GGGT-----T--GGG-SEEEEEESSBB
T ss_pred ccceEEEECccHHHHHHHHHHHHHhcc-------CceeEEEcchhhc-----c--ccCCCcCEEEEeecc
Confidence 3799999999999999999998862 2455544332211 1 123589999998755
No 111
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.07 E-value=1.8e-09 Score=82.50 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.|++++...+. ..++.+...++...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~------~~~v~~~~~d~~~~-------- 118 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------EIPVEILCNDIRHV-------- 118 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------CCCeEEEECChhhC--------
Confidence 5679999999999999888763 57899999999999999999876531 12344554444332
Q ss_pred hCCCCCcEEEEccccccC
Q 030274 150 KYPGGFDLILGADIYILY 167 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~~ 167 (180)
....+|+|+++.++.+.
T Consensus 119 -~~~~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 119 -EIKNASMVILNFTLQFL 135 (239)
T ss_pred -CCCCCCEEeeecchhhC
Confidence 12468999998887663
No 112
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.06 E-value=1.6e-09 Score=86.49 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++.+|||||||+|..++.+++. +.+|+++|.++.+++.++++...++ +.+...+..+. +..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~----------i~~i~gD~e~l-------p~~ 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----------CKIIEGDAEDL-------PFP 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC----------CeEEeccHHhC-------CCC
Confidence 5679999999999999888764 4699999999999999998865332 33333322211 113
Q ss_pred CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 152 PGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
.++||+|+++.++.+ .+....++.+.+
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~r 203 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQRGIKEAYR 203 (340)
T ss_pred CCceeEEEEcChhhhCCCHHHHHHHHHH
Confidence 468999999998765 455555555444
No 113
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.05 E-value=1.4e-09 Score=82.43 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=61.9
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.+.+|||+|||+|..+..+++.+ .+|+++|.++.+++.++.+... ++.+...+..... ..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~-------~~ 95 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----------NVQFICGDAEKLP-------LE 95 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----------CCeEEecchhhCC-------CC
Confidence 45789999999999999888865 5789999999999988876542 1334443333221 13
Q ss_pred CCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 152 PGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
.++||+|+++.++++ .+....+..+.+
T Consensus 96 ~~~fD~vi~~~~l~~~~~~~~~l~~~~~ 123 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCDDLSQALSELAR 123 (240)
T ss_pred CCceeEEEEhhhhhhccCHHHHHHHHHH
Confidence 468999999999877 455555555544
No 114
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.03 E-value=1.2e-09 Score=85.46 Aligned_cols=95 Identities=15% Similarity=0.291 Sum_probs=72.8
Q ss_pred HhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274 66 LSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI 144 (180)
Q Consensus 66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (180)
+.++...++++.|||+|||+|+++..+|+.| ++|++++.| +|.+.|++-++.|+. ..++.+.+....+.+
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~------~~rItVI~GKiEdie-- 239 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL------ADRITVIPGKIEDIE-- 239 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc------cceEEEccCcccccc--
Confidence 3345556899999999999999999999987 599999996 699999999998863 456777665555442
Q ss_pred hHHHhhCCCCCcEEEEccccccCCchhhHHH
Q 030274 145 NKIIQKYPGGFDLILGADIYILYNRSLLMTS 175 (180)
Q Consensus 145 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~ 175 (180)
.+++.|+||+-|+-|.-..+..+++
T Consensus 240 ------LPEk~DviISEPMG~mL~NERMLEs 264 (517)
T KOG1500|consen 240 ------LPEKVDVIISEPMGYMLVNERMLES 264 (517)
T ss_pred ------CchhccEEEeccchhhhhhHHHHHH
Confidence 4679999999999777333333333
No 115
>PRK04148 hypothetical protein; Provisional
Probab=98.99 E-value=3.7e-09 Score=73.22 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=61.3
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCCh-HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGV-TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
.+++|+.++....++.+|||+|||+|. ++..+++.|.+|+++|.++.+++.++++ + +.+..-|+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~----------~~~v~dDlf 68 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G----------LNAFVDDLF 68 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C----------CeEEECcCC
Confidence 367777776544466899999999996 8999999999999999999988888766 2 336666776
Q ss_pred CCchhhHHHhhCCCCCcEEEEccc
Q 030274 140 NSDQINKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~fD~Ii~~d~ 163 (180)
+.+. ..-+.+|+|-+.-|
T Consensus 69 ~p~~------~~y~~a~liysirp 86 (134)
T PRK04148 69 NPNL------EIYKNAKLIYSIRP 86 (134)
T ss_pred CCCH------HHHhcCCEEEEeCC
Confidence 6541 11246777776554
No 116
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.9e-09 Score=74.86 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=65.3
Q ss_pred HhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh
Q 030274 66 LSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI 144 (180)
Q Consensus 66 l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (180)
+......++|++++|||||+|.+++..+-.+ ..|+++|+++++++.+++|++.-..+ +.+.+.+..+..
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--------idlLqcdildle-- 109 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--------IDLLQCDILDLE-- 109 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--------hheeeeeccchh--
Confidence 3334456799999999999999998777765 58999999999999999999887522 334444443321
Q ss_pred hHHHhhCCCCCcEEEEccccccC
Q 030274 145 NKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 145 ~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
...+.||..+.+||+--.
T Consensus 110 -----~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 110 -----LKGGIFDTAVINPPFGTK 127 (185)
T ss_pred -----ccCCeEeeEEecCCCCcc
Confidence 134789999999998653
No 117
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.99 E-value=4.8e-09 Score=78.85 Aligned_cols=99 Identities=8% Similarity=-0.044 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCC--------CCCCC
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSEN--------PNSDA 129 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~--------~~~~~ 129 (180)
....|.+++..... .++.+|||+|||.|.-++.+|+.|.+|+++|+|+.+++.+.. .++.... .....
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~ 94 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAG 94 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecC
Confidence 34667777665421 256799999999999999999999999999999999997633 2221100 00112
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
++++...+....+. ...++||.|+-.-++.+
T Consensus 95 ~v~~~~~D~~~~~~------~~~~~fD~i~D~~~~~~ 125 (213)
T TIGR03840 95 NIEIFCGDFFALTA------ADLGPVDAVYDRAALIA 125 (213)
T ss_pred ceEEEEccCCCCCc------ccCCCcCEEEechhhcc
Confidence 34444444433211 11357999998876554
No 118
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=80.60 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
...+|.|||||+|..+-.+++. ++.++++|.|++|++.|++..-. +++...+.... ..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------------~~f~~aDl~~w--------~p 89 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------------ATFEEADLRTW--------KP 89 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------------CceecccHhhc--------CC
Confidence 5569999999999999888875 68999999999999999765222 22332222221 13
Q ss_pred CCCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274 152 PGGFDLILGADIYIL-YNRSLLMTSFFQAI 180 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~-~~~~~l~~~~~~al 180 (180)
....|+|++|-++.+ +++..++..+...|
T Consensus 90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L 119 (257)
T COG4106 90 EQPTDLLFANAVLQWLPDHPELLPRLVSQL 119 (257)
T ss_pred CCccchhhhhhhhhhccccHHHHHHHHHhh
Confidence 458999999999988 89999999887654
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.98 E-value=3.6e-09 Score=88.49 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.++.+|||||||+|..+..+++.+.+|+++|+++.+++.++.. ++ ...++.+...+..... .+...
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~---~~------~~~~i~~~~~d~~~~~-----~~~~~ 101 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI---NG------HYKNVKFMCADVTSPD-----LNISD 101 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH---hc------cCCceEEEEecccccc-----cCCCC
Confidence 3567999999999999999999888999999999999876542 21 0123555555543221 11134
Q ss_pred CCCcEEEEccccccCC
Q 030274 153 GGFDLILGADIYILYN 168 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~~~ 168 (180)
.+||+|+++.++++-.
T Consensus 102 ~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 102 GSVDLIFSNWLLMYLS 117 (475)
T ss_pred CCEEEEehhhhHHhCC
Confidence 6899999999988743
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=5.2e-09 Score=83.12 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
+..++.+..+..++.+|||+|||+|..++.+++.. .+|+++|.++++++.+++|++.++. .++.+...+.
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-------~nV~~i~gD~ 140 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-------ENVIFVCGDG 140 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEeCCh
Confidence 33334444444567899999999999999998753 3699999999999999999998862 2333333222
Q ss_pred CCCchhhHHHhhCCCCCcEEEEccc
Q 030274 139 GNSDQINKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~fD~Ii~~d~ 163 (180)
... . ....+||+|+++..
T Consensus 141 ~~~------~-~~~~~fD~Ii~~~g 158 (322)
T PRK13943 141 YYG------V-PEFAPYDVIFVTVG 158 (322)
T ss_pred hhc------c-cccCCccEEEECCc
Confidence 111 0 11247999998643
No 121
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.97 E-value=1.1e-08 Score=75.81 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=46.3
Q ss_pred HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 65 YLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.+.......++.+|||+|||+|.+++.+++. +.+|+++|.++.+++.+++|++.++
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~ 88 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG 88 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 3333334446789999999999999988864 4799999999999999999998876
No 122
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.96 E-value=4.5e-09 Score=81.02 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
...+.+.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.++.+++.++.++... .++.+...+.
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~---------~~v~v~~~D~ 84 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY---------ERLEVIEGDA 84 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC---------CcEEEEECch
Confidence 3344555555544557789999999999999999998889999999999999999876432 2355555555
Q ss_pred CCCchhhHHHhhCCCCCc---EEEEcccccc
Q 030274 139 GNSDQINKIIQKYPGGFD---LILGADIYIL 166 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~fD---~Ii~~d~~y~ 166 (180)
...+. ..+| +|++|.|++.
T Consensus 85 ~~~~~---------~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 85 LKVDL---------PDFPKQLKVVSNLPYNI 106 (253)
T ss_pred hcCCh---------hHcCCcceEEEcCChhh
Confidence 44321 1355 8999988654
No 123
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.95 E-value=5e-10 Score=83.34 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=58.2
Q ss_pred CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-hCCC
Q 030274 75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-KYPG 153 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (180)
-+++||||||||+.|..+-.+..+.+++|+|..|++.+.+.=-- ..+- ..+ ...+++ ....
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y---------------D~L~--~Ae-a~~Fl~~~~~e 187 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY---------------DTLY--VAE-AVLFLEDLTQE 187 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch---------------HHHH--HHH-HHHHhhhccCC
Confidence 46999999999999999998889999999999999988764111 1110 011 111222 3567
Q ss_pred CCcEEEEcccc-ccCCchhhHHH
Q 030274 154 GFDLILGADIY-ILYNRSLLMTS 175 (180)
Q Consensus 154 ~fD~Ii~~d~~-y~~~~~~l~~~ 175 (180)
+||+|.+.||+ |--+-..++..
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~ 210 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAG 210 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHH
Confidence 99999999996 54554444443
No 124
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.95 E-value=1.2e-08 Score=79.36 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 72 VLQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
..+|++|||||||.|+.+..+++.|+ .|+++|.+....-..+.--...+. ...+..+..+ ++.+ +.
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--------~~~~~~lplg----vE~L-p~ 179 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--------DPPVFELPLG----VEDL-PN 179 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--------CccEEEcCcc----hhhc-cc
Confidence 46899999999999999999998875 799999987543332211111110 0112222222 1111 22
Q ss_pred CCCCCcEEEEcccccc-CCchhhHHHHHHh
Q 030274 151 YPGGFDLILGADIYIL-YNRSLLMTSFFQA 179 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~a 179 (180)
.+.||+|++--|+|| .++-..+..+.++
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~ 208 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDS 208 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHh
Confidence 468999999999999 5555556555543
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.94 E-value=4.4e-09 Score=80.21 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+.++|||+|||+|+.++++++. ..+|+++|.++++++.|++|++.++.. .++++...+..+. +..+...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------~~i~~~~gda~~~--L~~l~~~ 139 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------HKINFIQSDALSA--LDQLLNN 139 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CcEEEEEccHHHH--HHHHHhC
Confidence 6779999999999988888763 369999999999999999999999732 2344444333221 1221111
Q ss_pred -CCCCCcEEEEc
Q 030274 151 -YPGGFDLILGA 161 (180)
Q Consensus 151 -~~~~fD~Ii~~ 161 (180)
..++||+|+..
T Consensus 140 ~~~~~fD~VfiD 151 (234)
T PLN02781 140 DPKPEFDFAFVD 151 (234)
T ss_pred CCCCCCCEEEEC
Confidence 13579998875
No 126
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.94 E-value=1.1e-08 Score=83.21 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=54.4
Q ss_pred CCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 75 ASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
+.+|||++||+|..|+.+++. + .+|+++|.++.+++.+++|++.|+.. ++.+. ..+. ..++.. .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------~~~v~-----~~Da-~~~l~~-~ 123 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------NEKVF-----NKDA-NALLHE-E 123 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------ceEEE-----hhhH-HHHHhh-c
Confidence 458999999999999999875 3 48999999999999999999999732 12222 2221 111111 4
Q ss_pred CCCcEEEEcc
Q 030274 153 GGFDLILGAD 162 (180)
Q Consensus 153 ~~fD~Ii~~d 162 (180)
.+||+|+..|
T Consensus 124 ~~fD~V~lDP 133 (382)
T PRK04338 124 RKFDVVDIDP 133 (382)
T ss_pred CCCCEEEECC
Confidence 5799999976
No 127
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.92 E-value=4.3e-09 Score=76.82 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=59.8
Q ss_pred CCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++.+|||||||.|.+-..+.+ ++.++.++|++++.+..+.++ | +.+.+.+.... +.. ..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----------v~Viq~Dld~g--L~~---f~d 73 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----------VSVIQGDLDEG--LAD---FPD 73 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----------CCEEECCHHHh--Hhh---CCC
Confidence 678999999999977766665 578999999999876666544 3 44777666553 222 257
Q ss_pred CCCcEEEEcccccc-CCchhhHHH
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTS 175 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~ 175 (180)
++||+||.+..+-. ..+..++.-
T Consensus 74 ~sFD~VIlsqtLQ~~~~P~~vL~E 97 (193)
T PF07021_consen 74 QSFDYVILSQTLQAVRRPDEVLEE 97 (193)
T ss_pred CCccEEehHhHHHhHhHHHHHHHH
Confidence 89999999998755 444444443
No 128
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.92 E-value=5.3e-09 Score=81.67 Aligned_cols=88 Identities=15% Similarity=0.273 Sum_probs=48.9
Q ss_pred CCeEEEeCCcCC-hHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 75 ASSILELGSGVG-VTGILCSR-FCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 75 ~~~vLdlG~G~G-~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..++||||+|.. +..|..++ .+++++|||+++..++.|++|++.| ++ ..+|.+....=.. .-+... ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L------~~~I~l~~~~~~~-~i~~~i-~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL------ESRIELRKQKNPD-NIFDGI-IQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-------TTTEEEEE--ST--SSTTTS-TT-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc------ccceEEEEcCCcc-ccchhh-hcc
Confidence 458999999985 55666555 4899999999999999999999999 53 3456665442111 111111 123
Q ss_pred CCCCcEEEEccccccCCch
Q 030274 152 PGGFDLILGADIYILYNRS 170 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~~~ 170 (180)
...||+.+||||+|....+
T Consensus 175 ~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp -S-EEEEEE-----SS---
T ss_pred cceeeEEecCCccccChhh
Confidence 4589999999999996543
No 129
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=6.3e-09 Score=77.10 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=56.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
...-|||||||+|+.|-.+...|..++++|+|+.|++.|.+. +..+ .+..-+.+.. ++..++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg-----------dlil~DMG~G------lpfrpG 111 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG-----------DLILCDMGEG------LPFRPG 111 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc-----------CeeeeecCCC------CCCCCC
Confidence 567899999999999999999999999999999999999862 2222 1455566654 234578
Q ss_pred CCcEEEEcccc
Q 030274 154 GFDLILGADIY 164 (180)
Q Consensus 154 ~fD~Ii~~d~~ 164 (180)
.||-+|+-.-+
T Consensus 112 tFDg~ISISAv 122 (270)
T KOG1541|consen 112 TFDGVISISAV 122 (270)
T ss_pred ccceEEEeeee
Confidence 99988876654
No 130
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.91 E-value=2.5e-08 Score=78.89 Aligned_cols=100 Identities=11% Similarity=0.163 Sum_probs=69.5
Q ss_pred HHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274 64 DYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS 141 (180)
Q Consensus 64 ~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
+.+.+.....+..+|||+|||+|..++.+++. ..+++++|. +.+++.+++|+...+. ..++++...+....
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl------~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV------ADRMRGIAVDIYKE 211 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc------cceEEEEecCccCC
Confidence 33444444446679999999999999998886 368999998 7899999999988762 23455555554432
Q ss_pred chhhHHHhhCCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274 142 DQINKIIQKYPGGFDLILGADIYILYNRS---LLMTSFFQA 179 (180)
Q Consensus 142 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a 179 (180)
. ...+|+|+.+-++++.... .+++.+.++
T Consensus 212 ~---------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~ 243 (306)
T TIGR02716 212 S---------YPEADAVLFCRILYSANEQLSTIMCKKAFDA 243 (306)
T ss_pred C---------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh
Confidence 1 1247999999888764333 355555544
No 131
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.91 E-value=2.1e-08 Score=73.13 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=69.7
Q ss_pred eecchHHHHHHHHhhCCC--CCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274 54 LVWPGAMLMNDYLSKNPD--VLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130 (180)
Q Consensus 54 ~~w~~~~~l~~~l~~~~~--~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~ 130 (180)
.+-|....+-+.+-.... .+.+.++||+.+|+|.+|+.+...| .+|+++|.+..+...+++|++..+.. .+
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------~~ 94 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------GE 94 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------cc
Confidence 355666555555554332 3689999999999999999777665 69999999999999999999887521 22
Q ss_pred EEEEEeecCCCchhhHHHhhCCC--CCcEEEEcccccc
Q 030274 131 LAVAKLEWGNSDQINKIIQKYPG--GFDLILGADIYIL 166 (180)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~--~fD~Ii~~d~~y~ 166 (180)
..+..- +.. .+++.... .||+|...||+-.
T Consensus 95 ~~~~~~-----da~-~~L~~~~~~~~FDlVflDPPy~~ 126 (187)
T COG0742 95 ARVLRN-----DAL-RALKQLGTREPFDLVFLDPPYAK 126 (187)
T ss_pred eEEEee-----cHH-HHHHhcCCCCcccEEEeCCCCcc
Confidence 222222 112 22222333 4999999998763
No 132
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.90 E-value=2.1e-08 Score=72.82 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=45.6
Q ss_pred CCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 70 PDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 70 ~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..+.++.+++|+|||||.+++.++.. ..+|+++|.++++++..++|++..+
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 34458889999999999999998854 4799999999999999999999987
No 133
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.90 E-value=1.2e-08 Score=75.60 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=58.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++.+|||+|||+|..+..+++. +..++++|.++++++.++++ + +.+...+.... +. +...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----------~~~~~~d~~~~--l~---~~~~ 73 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----------VNVIQGDLDEG--LE---AFPD 73 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----------CeEEEEEhhhc--cc---ccCC
Confidence 5669999999999998888754 56889999999998887642 2 22344333321 10 1134
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHH
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFF 177 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~ 177 (180)
++||+|+++.++++ .+....++.+.
T Consensus 74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~ 99 (194)
T TIGR02081 74 KSFDYVILSQTLQATRNPEEILDEML 99 (194)
T ss_pred CCcCEEEEhhHhHcCcCHHHHHHHHH
Confidence 68999999999877 45555555444
No 134
>PRK04266 fibrillarin; Provisional
Probab=98.89 E-value=2.6e-08 Score=75.50 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=41.7
Q ss_pred CCCCCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHH
Q 030274 70 PDVLQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 70 ~~~~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
....++.+|||+|||+|..++.+++.. .+|+++|.++.|++.+.++++.
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence 445578899999999999999998863 5899999999999988877654
No 135
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.89 E-value=1.4e-08 Score=78.76 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=34.6
Q ss_pred CCCeEEEeCCcCCh----HHHHHhhc-------CCeEEEecCCHHHHHHHHHHH
Q 030274 74 QASSILELGSGVGV----TGILCSRF-------CREVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 74 ~~~~vLdlG~G~G~----~~l~la~~-------~~~V~~~D~~~~~l~~~~~n~ 116 (180)
++.+|+|+|||||- +++.+++. +.+|+++|+|+.+++.|++++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45699999999995 45555543 358999999999999999864
No 136
>PRK06922 hypothetical protein; Provisional
Probab=98.89 E-value=5.6e-09 Score=88.86 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=56.9
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++.+|||+|||+|..+..+++. +.+|+++|+++.|++.++++...++ .++.+...+..+ +... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--------~~ie~I~gDa~d---Lp~~--f 483 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--------RSWNVIKGDAIN---LSSS--F 483 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--------CCeEEEEcchHh---Cccc--c
Confidence 46789999999999988887764 5799999999999999998876543 123333222221 1100 1
Q ss_pred CCCCCcEEEEccccc
Q 030274 151 YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y 165 (180)
.+++||+|+++.++.
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 356899999998765
No 137
>PLN03075 nicotianamine synthase; Provisional
Probab=98.88 E-value=3.1e-08 Score=77.42 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=64.9
Q ss_pred CCCeEEEeCCcC-ChHHHHHhh-c--CCeEEEecCCHHHHHHHHHHHHH-hcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGV-GVTGILCSR-F--CREVLLTDHNEEVLKILKKNIEH-HTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~la~-~--~~~V~~~D~~~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+.++|+|+|||. |+.++.+++ . +.+++++|.++++++.|++++.. .+. ..++++...+..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------~~rV~F~~~Da~~~~------ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------SKRMFFHTADVMDVT------ 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------cCCcEEEECchhhcc------
Confidence 678999999996 466776664 2 46899999999999999999965 331 234555555443321
Q ss_pred hhCCCCCcEEEEcccccc--CCchhhHHHHHHh
Q 030274 149 QKYPGGFDLILGADIYIL--YNRSLLMTSFFQA 179 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~y~--~~~~~l~~~~~~a 179 (180)
...++||+|++.-++|+ ......++.+.+.
T Consensus 191 -~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~ 222 (296)
T PLN03075 191 -ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKH 222 (296)
T ss_pred -cccCCcCEEEEecccccccccHHHHHHHHHHh
Confidence 12368999999955676 4666666666554
No 138
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.87 E-value=1.7e-08 Score=74.86 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=56.2
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
...+|||||||+|..+..+++. ..+|+++|.++.+++.+++++..++. .++.+...+... +... ...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-------~ni~~i~~d~~~---~~~~-~~~ 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-------KNLHVLCGDANE---LLDK-FFP 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-------CCEEEEccCHHH---HHHh-hCC
Confidence 3458999999999999988876 46999999999999999999988752 234443333221 1100 012
Q ss_pred CCCCcEEEEccc
Q 030274 152 PGGFDLILGADI 163 (180)
Q Consensus 152 ~~~fD~Ii~~d~ 163 (180)
.+.+|.|+.+.+
T Consensus 85 ~~~~d~v~~~~p 96 (194)
T TIGR00091 85 DGSLSKVFLNFP 96 (194)
T ss_pred CCceeEEEEECC
Confidence 358999998854
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=2.3e-08 Score=83.06 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred HHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274 59 AMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK 135 (180)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 135 (180)
+..++.++. ..++.+|||+|||+|..++.+++. ..+|+++|+++.+++.+++|++.++.. ++.+..
T Consensus 239 s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------~v~~~~ 307 (444)
T PRK14902 239 SMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------NIETKA 307 (444)
T ss_pred HHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eEEEEe
Confidence 344454442 235679999999999999988874 369999999999999999999998721 244444
Q ss_pred eecCCCchhhHHHhhCCCCCcEEEEccccc
Q 030274 136 LEWGNSDQINKIIQKYPGGFDLILGADIYI 165 (180)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y 165 (180)
.+..... ....++||+|++.+|++
T Consensus 308 ~D~~~~~------~~~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 308 LDARKVH------EKFAEKFDKILVDAPCS 331 (444)
T ss_pred CCccccc------chhcccCCEEEEcCCCC
Confidence 4433221 01136899999998754
No 140
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.3e-08 Score=73.32 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=59.8
Q ss_pred CCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 75 ASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.+.++|||||+|.++-.+++. ...+.+||+|+.+++..++.+..|+ .++.+.+-+... .+ .
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--------~~~~~V~tdl~~-----~l---~ 107 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--------VHIDVVRTDLLS-----GL---R 107 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--------CccceeehhHHh-----hh---c
Confidence 467999999999999998875 3578999999999999999999986 223344333332 22 2
Q ss_pred CCCCcEEEEccccccCC
Q 030274 152 PGGFDLILGADIYILYN 168 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~ 168 (180)
.++.|+++.|||+-...
T Consensus 108 ~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 108 NESVDVLVFNPPYVPTS 124 (209)
T ss_pred cCCccEEEECCCcCcCC
Confidence 47999999999987743
No 141
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.84 E-value=5.4e-08 Score=73.03 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++.+|||+|||+|..+..+++.. .+++++|.++.+++.++++.... .++.+...+..... .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~---------~~i~~~~~d~~~~~-------~ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELP---------LNIEFIQADAEALP-------F 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccC---------CCceEEecchhcCC-------C
Confidence 67899999999999999888764 48999999999999999887511 12334443333221 1
Q ss_pred CCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274 151 YPGGFDLILGADIYIL-YNRSLLMTSFF 177 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~-~~~~~l~~~~~ 177 (180)
..++||+|+++..+.+ .+...+++.+.
T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~~l~~~~ 130 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQKALREMY 130 (223)
T ss_pred CCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence 2457999999877654 34444444443
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=2.9e-08 Score=77.06 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=58.2
Q ss_pred CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++.+|||+|||+|..++.+++. ...|+++|.++.+++.+++|++.++. .++.+...+... + ..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-------~~v~~~~~D~~~---~----~~ 136 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-------LNVAVTNFDGRV---F----GA 136 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------CcEEEecCCHHH---h----hh
Confidence 6789999999999999988764 35899999999999999999999872 123333332211 1 11
Q ss_pred CCCCCcEEEEcccccc
Q 030274 151 YPGGFDLILGADIYIL 166 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~ 166 (180)
..++||+|++.+|+..
T Consensus 137 ~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 137 AVPKFDAILLDAPCSG 152 (264)
T ss_pred hccCCCEEEEcCCCCC
Confidence 2346999999887653
No 143
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.83 E-value=1.6e-08 Score=75.13 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 73 LQASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++.+|+|+.||.|.+++.+|+ .++.|+++|.+|.+++.+++|++.|+.. .++.....|.... .
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------~~i~~~~~D~~~~------~-- 165 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------NRIEVINGDAREF------L-- 165 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------TTEEEEES-GGG----------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------CeEEEEcCCHHHh------c--
Confidence 3678999999999999999998 5689999999999999999999999733 3455555544332 1
Q ss_pred CCCCCcEEEEcccccc
Q 030274 151 YPGGFDLILGADIYIL 166 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y~ 166 (180)
....+|-|+++-|-..
T Consensus 166 ~~~~~drvim~lp~~~ 181 (200)
T PF02475_consen 166 PEGKFDRVIMNLPESS 181 (200)
T ss_dssp -TT-EEEEEE--TSSG
T ss_pred CccccCEEEECChHHH
Confidence 1568999999887543
No 144
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=1.7e-08 Score=83.37 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 73 LQASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++.+|||+|||+|..++.+++.+ .+|+++|.++.+++.+++|++.++. ++.+...+.... ... .
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--------~~~~~~~D~~~~---~~~--~ 309 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--------KATVIVGDARDP---AQW--W 309 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEcCcccc---hhh--c
Confidence 367899999999999999888764 5999999999999999999999862 123333332221 110 1
Q ss_pred CCCCCcEEEEccccc
Q 030274 151 YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y 165 (180)
...+||.|++++|+.
T Consensus 310 ~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 310 DGQPFDRILLDAPCS 324 (427)
T ss_pred ccCCCCEEEECCCCC
Confidence 235799999988764
No 145
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.83 E-value=1.4e-08 Score=76.51 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~ 113 (180)
..|.+++.+.. ..++.+|||+|||.|.-++.+|..|.+|+++|+++.+++.+.
T Consensus 24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF 76 (218)
T ss_pred HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence 55666665432 125679999999999999999999999999999999999864
No 146
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.82 E-value=1.2e-08 Score=74.66 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=63.6
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC--Ce---------EEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC--RE---------VLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~--~~---------V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
..+|..|.......++..+||-.||+|.+.+.++..+ .. +++.|+++.+++.+++|++..+..
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~------ 87 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE------ 87 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C------
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC------
Confidence 4566666665555577899999999999998877653 23 789999999999999999987632
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
..+.+.+.+..... ...+.+|+||+++|+-.
T Consensus 88 ~~i~~~~~D~~~l~-------~~~~~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 88 DYIDFIQWDARELP-------LPDGSVDAIVTNPPYGR 118 (179)
T ss_dssp GGEEEEE--GGGGG-------GTTSBSCEEEEE--STT
T ss_pred CceEEEecchhhcc-------cccCCCCEEEECcchhh
Confidence 23445544444321 23568999999999866
No 147
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.81 E-value=1.1e-08 Score=73.27 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=53.8
Q ss_pred eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274 77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD 156 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 156 (180)
.|+|+.||.|.-++.+|+.+.+|+++|+++..++.++.|++..|. ..++.+..-+|.+.. ..+ .....+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv------~~~I~~i~gD~~~~~--~~~--~~~~~~D 71 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV------ADNIDFICGDFFELL--KRL--KSNKIFD 71 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-------GGGEEEEES-HHHHG--GGB--------S
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEeCCHHHHH--hhc--ccccccc
Confidence 699999999999999999999999999999999999999999872 346777777776531 111 0111289
Q ss_pred EEEEcccc
Q 030274 157 LILGADIY 164 (180)
Q Consensus 157 ~Ii~~d~~ 164 (180)
+|+++||.
T Consensus 72 ~vFlSPPW 79 (163)
T PF09445_consen 72 VVFLSPPW 79 (163)
T ss_dssp EEEE---B
T ss_pred EEEECCCC
Confidence 99999974
No 148
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=3.8e-08 Score=81.34 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++.+|||+|||+|..++.++.. +.+|+++|.++.+++.+++|++..+.. ++.+...+... +..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-------~v~~~~~Da~~---l~~--- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-------SIEIKIADAER---LTE--- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------eEEEEECchhh---hhh---
Confidence 36789999999999999888774 469999999999999999999988621 23444433322 111
Q ss_pred hCCCCCcEEEEcccccc
Q 030274 150 KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~ 166 (180)
...++||.|++..|+..
T Consensus 303 ~~~~~fD~Vl~DaPCsg 319 (431)
T PRK14903 303 YVQDTFDRILVDAPCTS 319 (431)
T ss_pred hhhccCCEEEECCCCCC
Confidence 12457999999887743
No 149
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=1.4e-09 Score=83.43 Aligned_cols=60 Identities=28% Similarity=0.461 Sum_probs=52.3
Q ss_pred cCceecchHHHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHH
Q 030274 51 TGQLVWPGAMLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLK 110 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~ 110 (180)
-|.++|.++..+..++.+. .-.+.+++|||||||+|+.++.+...+ ..|...|++.+.++
T Consensus 90 Gg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred cceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 4788999999999999855 234578999999999999999999887 79999999998883
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=8.2e-08 Score=79.79 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=63.5
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL 131 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 131 (180)
+++.+..+.-.+.. ..++.+|||+|||+|..++.+++. +.+|+++|.++.+++.+++|++.++. .++
T Consensus 234 vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-------~~v 303 (445)
T PRK14904 234 VQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-------TII 303 (445)
T ss_pred EeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-------CeE
Confidence 55544444444332 236789999999999988887763 36999999999999999999998862 124
Q ss_pred EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.+...+.... ....+||+|++.+|+
T Consensus 304 ~~~~~Da~~~--------~~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 304 ETIEGDARSF--------SPEEQPDAILLDAPC 328 (445)
T ss_pred EEEeCccccc--------ccCCCCCEEEEcCCC
Confidence 4443333221 023579999987653
No 151
>PRK04457 spermidine synthase; Provisional
Probab=98.78 E-value=9.3e-08 Score=74.10 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+.++|||||||+|.++..+++. +.+|+++|+++++++.+++++..++ ...++.+.. ++. .. ++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~------~~~rv~v~~---~Da--~~-~l~~~ 133 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE------NGERFEVIE---ADG--AE-YIAVH 133 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC------CCCceEEEE---CCH--HH-HHHhC
Confidence 4578999999999999888765 4799999999999999999976542 112344433 222 11 12234
Q ss_pred CCCCcEEEEc
Q 030274 152 PGGFDLILGA 161 (180)
Q Consensus 152 ~~~fD~Ii~~ 161 (180)
.++||+|+..
T Consensus 134 ~~~yD~I~~D 143 (262)
T PRK04457 134 RHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEe
Confidence 5689999975
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.78 E-value=1.7e-08 Score=75.33 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=58.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+.++||||||++|+.++++|+. +.+|+.+|.+++..+.|++|++..+.. .++++...+... .+..+..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------~~I~~~~gda~~--~l~~l~~ 115 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------DRIEVIEGDALE--VLPELAN 115 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------GGEEEEES-HHH--HHHHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------CcEEEEEeccHh--hHHHHHh
Confidence 36679999999999999999974 579999999999999999999998732 345554432221 1222222
Q ss_pred hC-CCCCcEEEEcc
Q 030274 150 KY-PGGFDLILGAD 162 (180)
Q Consensus 150 ~~-~~~fD~Ii~~d 162 (180)
.. .++||+|+..-
T Consensus 116 ~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 116 DGEEGQFDFVFIDA 129 (205)
T ss_dssp TTTTTSEEEEEEES
T ss_pred ccCCCceeEEEEcc
Confidence 22 35899988754
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.76 E-value=2.4e-08 Score=75.63 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=49.6
Q ss_pred eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHH
Q 030274 54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKI 111 (180)
Q Consensus 54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~ 111 (180)
.++.++..|...+.......++++|||+|||||.++..+++.| .+|+++|.++.++..
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 5678888999888876655688899999999999999999986 589999999976654
No 154
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.75 E-value=7.8e-08 Score=62.43 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=55.4
Q ss_pred eEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274 77 SILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF 155 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (180)
+++|+|||+|..+..+++ ...+++++|.++.+++.++++...+. ..++.+...++.+... ....+|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~ 67 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-------ADNVEVLKGDAEELPP------EADESF 67 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-------ccceEEEEcChhhhcc------ccCCce
Confidence 589999999999988887 56799999999999998886443332 1234454444443311 134689
Q ss_pred cEEEEcccccc
Q 030274 156 DLILGADIYIL 166 (180)
Q Consensus 156 D~Ii~~d~~y~ 166 (180)
|+|+++.++++
T Consensus 68 d~i~~~~~~~~ 78 (107)
T cd02440 68 DVIISDPPLHH 78 (107)
T ss_pred EEEEEccceee
Confidence 99999998765
No 155
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=5.1e-08 Score=80.73 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=58.5
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++.+|||+|||+|..++.+++. ..+|+++|.++.+++.+++|++.++.. ++.+...+.... .....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------~v~~~~~D~~~~---~~~~~ 320 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------SIKILAADSRNL---LELKP 320 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------eEEEEeCChhhc---ccccc
Confidence 36789999999999999988875 258999999999999999999998731 244443332221 10000
Q ss_pred hCCCCCcEEEEcccc
Q 030274 150 KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~ 164 (180)
...++||.|++..|+
T Consensus 321 ~~~~~fD~Vl~DaPC 335 (434)
T PRK14901 321 QWRGYFDRILLDAPC 335 (434)
T ss_pred cccccCCEEEEeCCC
Confidence 124589999987764
No 156
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.73 E-value=7.9e-09 Score=77.52 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274 77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD 156 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 156 (180)
.++|+|||+|..++.+|..-.+|++||.++.|++.+++.-...- ........+.+ ...+ ...+.+.|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y-----------~~t~~~ms~~~-~v~L-~g~e~SVD 102 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY-----------CHTPSTMSSDE-MVDL-LGGEESVD 102 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc-----------ccCCccccccc-cccc-cCCCccee
Confidence 89999999998888899888899999999999998876422221 01122222222 1111 11267999
Q ss_pred EEEEccccccCCchhhHHHHHH
Q 030274 157 LILGADIYILYNRSLLMTSFFQ 178 (180)
Q Consensus 157 ~Ii~~d~~y~~~~~~l~~~~~~ 178 (180)
+|+++.++++.+.+...+....
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~r 124 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYR 124 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHH
Confidence 9999999999776666555443
No 157
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.71 E-value=9.5e-08 Score=74.42 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc-----CCeEEEecCCHHHHHHHHHH
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF-----CREVLLTDHNEEVLKILKKN 115 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~-----~~~V~~~D~~~~~l~~~~~n 115 (180)
..+++.+.+... ....+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++
T Consensus 72 ~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 72 DAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred HHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 444445544322 24568999999999998887764 24799999999999999765
No 158
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.71 E-value=7.6e-08 Score=79.56 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=49.6
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.++..++.++. ..++.+|||+|||+|..++.+++. ..+|+++|.++.+++.+++|++.++
T Consensus 225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 45566666653 236789999999999999988875 3699999999999999999999986
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.70 E-value=4.5e-07 Score=79.26 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=69.9
Q ss_pred hHHHHHHHHhhCCCC-CCCCeEEEeCCcCChHHHHHhhc-----------------------------------------
Q 030274 58 GAMLMNDYLSKNPDV-LQASSILELGSGVGVTGILCSRF----------------------------------------- 95 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~-~~~~~vLdlG~G~G~~~l~la~~----------------------------------------- 95 (180)
--+.||..+...... .++..++|-+||+|.+.+.+|..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 337787777765554 35679999999999999877642
Q ss_pred ---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 96 ---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 96 ---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
..+++++|+++.+++.|+.|+..++.. ..+.+...++.+... +...++||+|++|||+..
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~------~~i~~~~~D~~~~~~-----~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVA------ELITFEVKDVADLKN-----PLPKGPTGLVISNPPYGE 315 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCC------cceEEEeCChhhccc-----ccccCCCCEEEECCCCcC
Confidence 126999999999999999999999732 234444444443211 111247999999999866
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.70 E-value=2.8e-07 Score=76.39 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCSRFC------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
+++.|+|+|||+|.++..+++.+ .+|++++.++.+...+++.++.|+ ...++++.+-+..+.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~------w~~~V~vi~~d~r~v~l---- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG------WGDKVTVIHGDMREVEL---- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT------TTTTEEEEES-TTTSCH----
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC------CCCeEEEEeCcccCCCC----
Confidence 46789999999999987766553 599999999999988888778876 34568888877776542
Q ss_pred HhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274 148 IQKYPGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
+.++|+||+--+-+.-..+...+++
T Consensus 256 ----pekvDIIVSElLGsfg~nEl~pE~L 280 (448)
T PF05185_consen 256 ----PEKVDIIVSELLGSFGDNELSPECL 280 (448)
T ss_dssp ----SS-EEEEEE---BTTBTTTSHHHHH
T ss_pred ----CCceeEEEEeccCCccccccCHHHH
Confidence 4589999999886554434444443
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.70 E-value=2.2e-07 Score=75.31 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=55.2
Q ss_pred CCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 75 ASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+.+|||+.||+|..|+.+++. | .+|+++|.++.+++.+++|++.|+.. ++.+.+ .+. ..++...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-------~~~v~~-----~Da-~~~l~~~ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-------NIEVPN-----EDA-ANVLRYR 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------cEEEEc-----hhH-HHHHHHh
Confidence 358999999999999999886 4 68999999999999999999999621 222222 221 1122223
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
..+||+|...|
T Consensus 112 ~~~fDvIdlDP 122 (374)
T TIGR00308 112 NRKFHVIDIDP 122 (374)
T ss_pred CCCCCEEEeCC
Confidence 45799999855
No 162
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.69 E-value=1.4e-07 Score=76.47 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=59.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.+..+||||||+|...+.+|+. ...++|+|+++.+++.+.+++..+++ .++.+...+... +.. ...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-------~NV~~i~~DA~~---ll~--~~~ 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-------KNLLIINYDARL---LLE--LLP 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------CcEEEEECCHHH---hhh--hCC
Confidence 3458999999999999999986 47999999999999999999988762 234444433321 111 124
Q ss_pred CCCCcEEEEcccccc
Q 030274 152 PGGFDLILGADIYIL 166 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~ 166 (180)
.+++|.|+++-|..|
T Consensus 190 ~~s~D~I~lnFPdPW 204 (390)
T PRK14121 190 SNSVEKIFVHFPVPW 204 (390)
T ss_pred CCceeEEEEeCCCCc
Confidence 578999998876544
No 163
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.69 E-value=1.9e-07 Score=73.86 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHh
Q 030274 74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
++.+|||+|||+|..+..+++. +.+|+++|+|++|++.+++++...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~ 111 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD 111 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh
Confidence 5578999999999999888765 579999999999999999998764
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.68 E-value=1.9e-07 Score=70.02 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=63.4
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
|..-.+..+|.+. .+.++|||||++.|+.++++|.. ..+++.+|.+++..+.|++|++..+.. .++..
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------~~i~~ 115 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------DRIEL 115 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------ceEEE
Confidence 3333344444443 36789999999999999999874 368999999999999999999998832 22333
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEc
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGA 161 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~ 161 (180)
..- .+.++.+.....++||+|+..
T Consensus 116 ~~~----gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 116 LLG----GDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred Eec----CcHHHHHHhccCCCccEEEEe
Confidence 221 222333322346799998764
No 165
>PLN02476 O-methyltransferase
Probab=98.68 E-value=1.4e-07 Score=73.41 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=43.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
+.++|||+|+|+|+.++.+|+. +.+|+.+|.+++.++.|++|++..+.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl 168 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV 168 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 6689999999999999999874 46899999999999999999999974
No 166
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.67 E-value=3e-07 Score=68.98 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++.+|||||||+|.++..+++.. .+|+++|+++ + +. ..++.+.+.++.+...+..+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~-------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP-------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC-------CCCcEEEecCCCChHHHHHHHH
Confidence 467799999999999999888753 5899999987 1 11 1235567777766432332222
Q ss_pred -hCCCCCcEEEEcccccc
Q 030274 150 -KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 -~~~~~fD~Ii~~d~~y~ 166 (180)
...++||+|+++...+.
T Consensus 112 ~~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNM 129 (209)
T ss_pred HhCCCCCCEEecCCCCcc
Confidence 23568999999875443
No 167
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.4e-07 Score=71.05 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=66.7
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS 141 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
+.+.+....+..++.+|||||+|.|.++..+++.+.+|+++++++.+++.+++..... .++.+..-|.-..
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---------~n~~vi~~DaLk~ 88 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---------DNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---------cceEEEeCchhcC
Confidence 3555655555556789999999999999999999999999999999999999886522 2344554444433
Q ss_pred chhhHHHhhCCC--CCcEEEEccccccC
Q 030274 142 DQINKIIQKYPG--GFDLILGADIYILY 167 (180)
Q Consensus 142 ~~~~~~~~~~~~--~fD~Ii~~d~~y~~ 167 (180)
+ .+. .++.|++|=|||-.
T Consensus 89 d--------~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 89 D--------FPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred c--------chhhcCCCEEEEcCCCccc
Confidence 2 122 68999999988763
No 168
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.60 E-value=5.5e-07 Score=66.30 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEee
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLE 137 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~ 137 (180)
.+.+...+.....++.+|||+|||+|.++..+++.. .+|+++|+++.+ ... ++.+...+
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~----------~i~~~~~d 80 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIE----------NVDFIRGD 80 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCC----------CceEEEee
Confidence 444444445555678899999999999988877652 479999999853 111 24455666
Q ss_pred cCCCchhhHHHh-hCCCCCcEEEEcc
Q 030274 138 WGNSDQINKIIQ-KYPGGFDLILGAD 162 (180)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~fD~Ii~~d 162 (180)
..+.+....+.. ....+||+|+++.
T Consensus 81 ~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 81 FTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CCChhHHHHHHHHhCCCCccEEEcCC
Confidence 655432222221 1345799999864
No 169
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=3.1e-07 Score=67.64 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=64.2
Q ss_pred CeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274 76 SSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG 154 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
..|||+|||||..--..- +.+.+|+++|.++.|-+.+.+.+..+.+ ..+..+.....+.+.++ ..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~---------~~~~~fvva~ge~l~~l---~d~s 145 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP---------LQVERFVVADGENLPQL---ADGS 145 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC---------cceEEEEeechhcCccc---ccCC
Confidence 368999999997544433 3478999999999999999999988852 33455555555554433 5789
Q ss_pred CcEEEEcccccc-CCchhhHHHH
Q 030274 155 FDLILGADIYIL-YNRSLLMTSF 176 (180)
Q Consensus 155 fD~Ii~~d~~y~-~~~~~l~~~~ 176 (180)
+|.|++.=++.. .+....+.-+
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~ 168 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEV 168 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHH
Confidence 999999998766 4544555444
No 170
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.52 E-value=6.4e-06 Score=66.30 Aligned_cols=94 Identities=9% Similarity=0.013 Sum_probs=71.9
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCC-----------------------------------------e
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCR-----------------------------------------E 98 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~-----------------------------------------~ 98 (180)
+.||..|.......++..++|-=||+|.+.+.+|..+. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 77888887777766778999999999999998887653 3
Q ss_pred EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 99 VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 99 V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
++++|+++.+++.|+.|+...+.. ..+.+...+..... .....+|+||+|||+=.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~------d~I~f~~~d~~~l~-------~~~~~~gvvI~NPPYGe 311 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVG------DLIEFKQADATDLK-------EPLEEYGVVISNPPYGE 311 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCC------ceEEEEEcchhhCC-------CCCCcCCEEEeCCCcch
Confidence 779999999999999999999832 33444444433321 11268999999999755
No 171
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=4.5e-07 Score=71.89 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=71.8
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
..||..+.+.....+|..|||=-||||.+.+.+...|++|+++|++..|+.-++.|++.-+... +.-+...
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~---------~~~~~~~ 253 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED---------YPVLKVL 253 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc---------eeEEEec
Confidence 6788888887777789999999999999999999999999999999999999999999886221 2222222
Q ss_pred CCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 140 NSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+...+ +....++|.|++.||+=.
T Consensus 254 Da~~l----pl~~~~vdaIatDPPYGr 276 (347)
T COG1041 254 DATNL----PLRDNSVDAIATDPPYGR 276 (347)
T ss_pred ccccC----CCCCCccceEEecCCCCc
Confidence 22221 112336999999998744
No 172
>PTZ00146 fibrillarin; Provisional
Probab=98.51 E-value=1.7e-06 Score=67.58 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=46.2
Q ss_pred ceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHH
Q 030274 53 QLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKN 115 (180)
Q Consensus 53 ~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n 115 (180)
.++|+.- -.|+..+..- ..+.++.+|||||||+|..+..++... ..|+++|+++.+++.+...
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ 176 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNM 176 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHH
Confidence 6788765 3566555332 234577899999999999999999863 5899999998766544443
No 173
>PRK00811 spermidine synthase; Provisional
Probab=98.49 E-value=5.3e-07 Score=70.67 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=54.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+.++||+||||.|..+..+.+. + .+|+++|+++.+++.+++++...+.... ...++.+. .++.. . ++...
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~--~d~rv~v~---~~Da~--~-~l~~~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY--DDPRVELV---IGDGI--K-FVAET 147 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc--cCCceEEE---ECchH--H-HHhhC
Confidence 4579999999999999887775 3 6999999999999999999865321100 01233333 23321 1 12234
Q ss_pred CCCCcEEEEc
Q 030274 152 PGGFDLILGA 161 (180)
Q Consensus 152 ~~~fD~Ii~~ 161 (180)
.++||+|++.
T Consensus 148 ~~~yDvIi~D 157 (283)
T PRK00811 148 ENSFDVIIVD 157 (283)
T ss_pred CCcccEEEEC
Confidence 5689999985
No 174
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=4.4e-07 Score=76.80 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=54.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+.++||++|||+|..+..+++.. .+|+++|+++++++.+++|...+..+.......++++.. ++. . ..+...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~---~Da--~-~~l~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN---DDA--F-NWLRKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE---ChH--H-HHHHhC
Confidence 46799999999999998877763 699999999999999999643221110000112343332 222 1 122334
Q ss_pred CCCCcEEEEccc
Q 030274 152 PGGFDLILGADI 163 (180)
Q Consensus 152 ~~~fD~Ii~~d~ 163 (180)
.++||+|+++.+
T Consensus 371 ~~~fDvIi~D~~ 382 (521)
T PRK03612 371 AEKFDVIIVDLP 382 (521)
T ss_pred CCCCCEEEEeCC
Confidence 568999999754
No 175
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=6.2e-07 Score=71.42 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.|.+|||+.||.|.+++.+|+.|.. |+++|+||.+++.+++|+++|+... .+... .++...+.. ..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~------~v~~i---~gD~rev~~----~~ 254 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEG------RVEPI---LGDAREVAP----EL 254 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccc------eeeEE---eccHHHhhh----cc
Confidence 5889999999999999999999864 9999999999999999999998321 12222 232222211 12
Q ss_pred CCCcEEEEccccc
Q 030274 153 GGFDLILGADIYI 165 (180)
Q Consensus 153 ~~fD~Ii~~d~~y 165 (180)
+.+|-|+++-|-.
T Consensus 255 ~~aDrIim~~p~~ 267 (341)
T COG2520 255 GVADRIIMGLPKS 267 (341)
T ss_pred ccCCEEEeCCCCc
Confidence 6799999988754
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.46 E-value=6.5e-07 Score=68.64 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=43.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 74 QASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
+.++|||||+++|+.++++|+. +.+|+.+|.+++..+.|++|++..+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~ 129 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV 129 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 5679999999999999999874 46999999999999999999999873
No 177
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.41 E-value=1.1e-06 Score=74.65 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC----------CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 74 QASSILELGSGVGVTGILCSRFC----------REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~----------~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
...+|||.|||+|.+.+.++... ..+++.|+++.++..++.|+...+. ..+.+...++....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-------~~~~i~~~d~l~~~- 102 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-------LEINVINFNSLSYV- 102 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-------CCceeeeccccccc-
Confidence 34689999999998888776531 4789999999999999999877640 11222222211110
Q ss_pred hhHHHhhCCCCCcEEEEcccccc
Q 030274 144 INKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.. ......++||+||+|||+-.
T Consensus 103 ~~-~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 103 LL-NIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred cc-ccccccCcccEEEeCCCccc
Confidence 00 00112358999999999764
No 178
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.38 E-value=3.4e-06 Score=64.61 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=71.9
Q ss_pred CcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274 50 LTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129 (180)
Q Consensus 50 ~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~ 129 (180)
.+|+++-..+.++.. +.......+...|||+|-|||.++..+...|++|++++.++.|+..+++..+.-- ...
T Consensus 35 d~GQHilkNp~v~~~-I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp------~~~ 107 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQ-IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP------KSG 107 (315)
T ss_pred ccchhhhcCHHHHHH-HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC------ccc
Confidence 357766666554444 4444445577899999999999999999999999999999999999888765432 234
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
++++...++-..+ ...||.+|+|=|+
T Consensus 108 kLqV~~gD~lK~d---------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 108 KLQVLHGDFLKTD---------LPRFDGCVSNLPY 133 (315)
T ss_pred eeeEEecccccCC---------CcccceeeccCCc
Confidence 5666665555432 3478999987654
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=2.3e-06 Score=66.64 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=53.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..++||+||||+|..+..+.+. ..+|+++|+++.+++.+++++...+.. ....++++.. .+. .. .+...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~---~~~~~v~i~~---~D~--~~-~l~~~ 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS---YDDPRVDLQI---DDG--FK-FLADT 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc---ccCCceEEEE---Cch--HH-HHHhC
Confidence 3459999999999888777665 368999999999999999987654210 0112233332 222 22 12233
Q ss_pred CCCCcEEEEccc
Q 030274 152 PGGFDLILGADI 163 (180)
Q Consensus 152 ~~~fD~Ii~~d~ 163 (180)
.++||+|++..+
T Consensus 143 ~~~yDvIi~D~~ 154 (270)
T TIGR00417 143 ENTFDVIIVDST 154 (270)
T ss_pred CCCccEEEEeCC
Confidence 568999998654
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.37 E-value=2.7e-06 Score=65.97 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274 51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~ 130 (180)
+|++ +=....+++.+.+.....++..|||+|+|+|.++..+++.+.+|+++|.++...+.+++.+..+ .+
T Consensus 8 ~gQn-FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---------~~ 77 (262)
T PF00398_consen 8 LGQN-FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---------PN 77 (262)
T ss_dssp CTSS-EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---------SS
T ss_pred CCcC-eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---------cc
Confidence 3443 3335556666655555557889999999999999999999999999999999999999876633 35
Q ss_pred EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+.+..-|+...+.... .......|++|-|++.
T Consensus 78 ~~vi~~D~l~~~~~~~----~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 78 VEVINGDFLKWDLYDL----LKNQPLLVVGNLPYNI 109 (262)
T ss_dssp EEEEES-TTTSCGGGH----CSSSEEEEEEEETGTG
T ss_pred ceeeecchhccccHHh----hcCCceEEEEEecccc
Confidence 7777777766543211 1346678999887643
No 181
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=6.7e-06 Score=62.54 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=46.0
Q ss_pred CCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 69 NPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 69 ~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.....++.+|||.|.|+|.++..+|+. | .+|+..|+.++.++.|++|++..+
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~ 143 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG 143 (256)
T ss_pred HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence 345668999999999999999999973 3 699999999999999999999975
No 182
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.37 E-value=2.4e-07 Score=73.43 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=58.1
Q ss_pred cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh---------cCCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR---------FCREVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~---------~~~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
.|...-| ..+++++.+.....++.+|+|-+||+|.+.+.+.+ ...+++|.|+++.++..++.|+..++.
T Consensus 25 ~G~~~TP--~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 25 LGQFYTP--REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp CGGC-----HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred cceeehH--HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 3554444 33444444433444667899999999988776665 346899999999999999999877652
Q ss_pred CCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 122 SENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
.. .+..+...+.-..+. .....+||+|+++||+-.
T Consensus 103 ~~-----~~~~i~~~d~l~~~~-----~~~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 103 DN-----SNINIIQGDSLENDK-----FIKNQKFDVIIGNPPFGS 137 (311)
T ss_dssp HC-----BGCEEEES-TTTSHS-----CTST--EEEEEEE--CTC
T ss_pred cc-----ccccccccccccccc-----cccccccccccCCCCccc
Confidence 10 111222222222211 011468999999999643
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.37 E-value=3.3e-06 Score=64.68 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=58.8
Q ss_pred hhCCCCCCCCeEEEeCCcCChHHHHHhhc-C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 67 SKNPDVLQASSILELGSGVGVTGILCSRF-C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 67 ~~~~~~~~~~~vLdlG~G~G~~~l~la~~-~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
.......+|.+|||-|.|+|.+++.+++. + .+|+..|..++..+.|++|++.++. ..++.+..-|....-
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl------~~~v~~~~~Dv~~~g- 105 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL------DDNVTVHHRDVCEEG- 105 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC------CTTEEEEES-GGCG--
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC------CCCceeEecceeccc-
Confidence 33345568999999999999999999974 2 6999999999999999999999874 235666666654321
Q ss_pred hhHHHhhCCCCCcEEEEccc
Q 030274 144 INKIIQKYPGGFDLILGADI 163 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~ 163 (180)
+. ......+|.|+..=|
T Consensus 106 ~~---~~~~~~~DavfLDlp 122 (247)
T PF08704_consen 106 FD---EELESDFDAVFLDLP 122 (247)
T ss_dssp -S---TT-TTSEEEEEEESS
T ss_pred cc---ccccCcccEEEEeCC
Confidence 10 012357888877654
No 184
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.35 E-value=2.3e-06 Score=65.34 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=62.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE-EEeecCCCchhhHHHhhCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV-AKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (180)
+..++||||+|.|-++..++..-.+|++||.|+.|...+++ .| ..+ ...+|.+. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg----------~~vl~~~~w~~~----------~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG----------FTVLDIDDWQQT----------D 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC----------CeEEehhhhhcc----------C
Confidence 45689999999999999999988999999999988665554 33 122 23445542 4
Q ss_pred CCCcEEEEcccccc-CCchhhHHHHHHhC
Q 030274 153 GGFDLILGADIYIL-YNRSLLMTSFFQAI 180 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~-~~~~~l~~~~~~al 180 (180)
.+||+|.|-.++=. ..+..+++.+..+|
T Consensus 150 ~~fDvIscLNvLDRc~~P~~LL~~i~~~l 178 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCDRPLTLLRDIRRAL 178 (265)
T ss_pred CceEEEeehhhhhccCCHHHHHHHHHHHh
Confidence 58999999999855 66677887777654
No 185
>PRK01581 speE spermidine synthase; Validated
Probab=98.33 E-value=1.5e-06 Score=69.71 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..++||+||||+|.....+.+.. .+|+++|+++++++.|++...............++++. .++. .. ++...
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv---i~Da--~~-fL~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH---VCDA--KE-FLSSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE---ECcH--HH-HHHhc
Confidence 45699999999998777777653 69999999999999999632111000000011233332 2322 22 12334
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
.++||+|++.-
T Consensus 224 ~~~YDVIIvDl 234 (374)
T PRK01581 224 SSLYDVIIIDF 234 (374)
T ss_pred CCCccEEEEcC
Confidence 56899999873
No 186
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.33 E-value=6.4e-06 Score=62.34 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~ 114 (180)
....|.+|+.+... .++.+||..|||.|.-.+.||..|.+|+++|+|+.+++.+.+
T Consensus 28 pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 28 PNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence 34566666655432 256799999999999999999999999999999999998855
No 187
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.29 E-value=3.8e-06 Score=58.83 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=40.3
Q ss_pred eEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 77 SILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
++||+|||.|..++.+++.+ .+|+++|.++.+.+.+++|++.|+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 48999999999999998875 379999999999999999999986
No 188
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.25 E-value=7.1e-06 Score=62.68 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=63.2
Q ss_pred HHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274 65 YLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD 142 (180)
Q Consensus 65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
.+.......+..+|+|||+|+|..+..+++. +.+++..|. |.+++.+++ . .++.+...++.+.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----------~rv~~~~gd~f~~- 155 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----------DRVEFVPGDFFDP- 155 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----------TTEEEEES-TTTC-
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----------cccccccccHHhh-
Confidence 3333344445578999999999999988875 579999999 889998888 2 2577888887732
Q ss_pred hhhHHHhhCCCCCcEEEEccccccCCch---hhHHHHHHh
Q 030274 143 QINKIIQKYPGGFDLILGADIYILYNRS---LLMTSFFQA 179 (180)
Q Consensus 143 ~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~l~~~~~~a 179 (180)
.+. +|+++.+.++++.... .+++.+.+|
T Consensus 156 --------~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~a 186 (241)
T PF00891_consen 156 --------LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAA 186 (241)
T ss_dssp --------CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHH
T ss_pred --------hcc-ccceeeehhhhhcchHHHHHHHHHHHHH
Confidence 244 9999999999874433 445555444
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.24 E-value=6.8e-06 Score=58.70 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=75.5
Q ss_pred cCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 51 TGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
.|. +-|++-.+++-+.......++.-|||+|.|||.++-.+.+.| ..+++++++++....+.+....-+
T Consensus 26 VGa-I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~------- 97 (194)
T COG3963 26 VGA-ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN------- 97 (194)
T ss_pred eee-ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------
Confidence 343 677888888888877666688899999999999999877765 589999999999888877643321
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc---CCchhhHHHHH
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL---YNRSLLMTSFF 177 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~---~~~~~l~~~~~ 177 (180)
+.+.+-.+.+. .+.......||.|+++=|+-. .....+++.+.
T Consensus 98 -----ii~gda~~l~~--~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~ 143 (194)
T COG3963 98 -----IINGDAFDLRT--TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143 (194)
T ss_pred -----ccccchhhHHH--HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHH
Confidence 33322222211 111234568999999987644 23334444443
No 190
>PLN02366 spermidine synthase
Probab=98.24 E-value=4.5e-06 Score=66.13 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=53.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..++||+||||.|.....+++. ..+|+.+|+++.+++.+++.+...+.. ....++++.. ++. ...+....
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~---~~dpRv~vi~---~Da--~~~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG---FDDPRVNLHI---GDG--VEFLKNAP 162 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc---cCCCceEEEE---ChH--HHHHhhcc
Confidence 4679999999999988888876 368999999999999999988653211 0122344332 322 11111112
Q ss_pred CCCCcEEEEc
Q 030274 152 PGGFDLILGA 161 (180)
Q Consensus 152 ~~~fD~Ii~~ 161 (180)
.++||+|++.
T Consensus 163 ~~~yDvIi~D 172 (308)
T PLN02366 163 EGTYDAIIVD 172 (308)
T ss_pred CCCCCEEEEc
Confidence 4689999984
No 191
>PRK10742 putative methyltransferase; Provisional
Probab=98.22 E-value=1.2e-05 Score=61.24 Aligned_cols=87 Identities=9% Similarity=0.167 Sum_probs=59.0
Q ss_pred eEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCc
Q 030274 77 SILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFD 156 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 156 (180)
+|||+-+|+|..|+.++..|++|+++|.++.+...++.|++...... .....+ ..++.....+....+ ......||
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~--~~~~~~-~~ri~l~~~da~~~L-~~~~~~fD 166 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA--EIGGWL-QERLQLIHASSLTAL-TDITPRPQ 166 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc--ccchhh-hceEEEEeCcHHHHH-hhCCCCCc
Confidence 89999999999999999999999999999999999999998842110 000000 011222223333332 22345899
Q ss_pred EEEEccccccC
Q 030274 157 LILGADIYILY 167 (180)
Q Consensus 157 ~Ii~~d~~y~~ 167 (180)
+|...|++-+.
T Consensus 167 VVYlDPMfp~~ 177 (250)
T PRK10742 167 VVYLDPMFPHK 177 (250)
T ss_pred EEEECCCCCCC
Confidence 99988876553
No 192
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=62.97 Aligned_cols=46 Identities=13% Similarity=0.390 Sum_probs=42.7
Q ss_pred CCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 75 ASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
...+.|||+|+|.++..+|+...+|++++.+|.....|++|+..++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g 78 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG 78 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC
Confidence 3589999999999999999998899999999999999999997776
No 193
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.16 E-value=1.6e-05 Score=62.46 Aligned_cols=79 Identities=11% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 72 VLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..++..+||.+||.|.-+..+++.. .+|+++|.++++++.+++++.. . .++.+..-++.+ +...+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~--------~ri~~i~~~f~~---l~~~l 84 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F--------GRFTLVHGNFSN---LKEVL 84 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C--------CcEEEEeCCHHH---HHHHH
Confidence 3467799999999999999888763 6999999999999999988644 1 134454444443 22222
Q ss_pred hhCCCCCcEEEEcc
Q 030274 149 QKYPGGFDLILGAD 162 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d 162 (180)
+....++|.|++.-
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 22112688887653
No 194
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.15 E-value=2.3e-05 Score=59.73 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhc--------CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274 71 DVLQASSILELGSGVGVTGILCSRF--------CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD 142 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~--------~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
+...+.++||++||||-++..+.+. ..+|+..|+|+.|++.+++......+.. .....|...+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~---------~~~~~w~~~d 167 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA---------SSRVEWVEGD 167 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---------CCceEEEeCC
Confidence 3446789999999999988877664 1689999999999999999987754321 1134555433
Q ss_pred hhhHHHhhCCCCCcEEEEcccc
Q 030274 143 QINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 143 ~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.. . ++....+||....+--+
T Consensus 168 AE-~-LpFdd~s~D~yTiafGI 187 (296)
T KOG1540|consen 168 AE-D-LPFDDDSFDAYTIAFGI 187 (296)
T ss_pred cc-c-CCCCCCcceeEEEecce
Confidence 11 1 23356688887766554
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.09 E-value=3e-05 Score=56.96 Aligned_cols=72 Identities=21% Similarity=0.333 Sum_probs=52.5
Q ss_pred eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274 77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG 154 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
+++|+|+|.|++|+.+|-. ..+|+.+|....-+..++.-+...++ .++.+.+.+..+ .....+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-------~nv~v~~~R~E~--------~~~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-------SNVEVINGRAEE--------PEYRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--------SSEEEEES-HHH--------TTTTT-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-------CCEEEEEeeecc--------cccCCC
Confidence 7999999999999998865 47899999999888877777776652 235555444333 124678
Q ss_pred CcEEEEccc
Q 030274 155 FDLILGADI 163 (180)
Q Consensus 155 fD~Ii~~d~ 163 (180)
||+|++--+
T Consensus 116 fd~v~aRAv 124 (184)
T PF02527_consen 116 FDVVTARAV 124 (184)
T ss_dssp EEEEEEESS
T ss_pred ccEEEeehh
Confidence 999998764
No 196
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.07 E-value=8e-06 Score=61.63 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH-HHHHhcCCCCC----C
Q 030274 52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK-NIEHHTSSENP----N 126 (180)
Q Consensus 52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~~~----~ 126 (180)
++..=..+..|.+++.+. ...++.+||..|||.|.-.+.+|..|.+|+++|+|+.+++.+.+ |.......... .
T Consensus 16 ~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~ 94 (218)
T PF05724_consen 16 PWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRY 94 (218)
T ss_dssp TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEE
T ss_pred CCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeee
Confidence 333333457788887762 22356799999999999999999999999999999999998843 22111100000 1
Q ss_pred CCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 127 SDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
...++.+..-|+-.... ...++||+|.=.-++
T Consensus 95 ~~~~i~~~~gDfF~l~~------~~~g~fD~iyDr~~l 126 (218)
T PF05724_consen 95 QAGRITIYCGDFFELPP------EDVGKFDLIYDRTFL 126 (218)
T ss_dssp TTSSEEEEES-TTTGGG------SCHHSEEEEEECSST
T ss_pred cCCceEEEEcccccCCh------hhcCCceEEEEeccc
Confidence 12345555555554321 123579999876654
No 197
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.03 E-value=1.7e-05 Score=55.79 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=41.6
Q ss_pred CCCCeEEEeCCcCChHHHHHhh------cCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 73 LQASSILELGSGVGVTGILCSR------FCREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~------~~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.+..+|+|+|||-|+++..++. .+.+|+++|.++..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567999999999999999988 36799999999999998888877655
No 198
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=59.58 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=61.0
Q ss_pred HHHHHHHhhCC-CC-CCCCeEEEeCCcCChHHHHH--hhcCCeEEEecCCHHHHHHHHHHHHHh-cCCCCCCCCCcEEEE
Q 030274 60 MLMNDYLSKNP-DV-LQASSILELGSGVGVTGILC--SRFCREVLLTDHNEEVLKILKKNIEHH-TSSENPNSDAGLAVA 134 (180)
Q Consensus 60 ~~l~~~l~~~~-~~-~~~~~vLdlG~G~G~~~l~l--a~~~~~V~~~D~~~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~ 134 (180)
..|++.|.+-. .. .++.++||+|.|.-.+==.+ ...|.+.+++|+++..++.|+.++..| +.+ ..++.+
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~------~~I~lr 135 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE------RAIRLR 135 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh------hheeEE
Confidence 44566555432 22 25568999988875332222 235899999999999999999999998 321 122222
Q ss_pred EeecCCCchhhHHHhhCCCCCcEEEEccccccCC
Q 030274 135 KLEWGNSDQINKIIQKYPGGFDLILGADIYILYN 168 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~ 168 (180)
.- .+.+.+-.......+.||+.+||||+|.+.
T Consensus 136 ~q--k~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 136 RQ--KDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred ec--cCccccccccccccceeeeEecCCCcchhH
Confidence 11 111111000111246899999999998854
No 199
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.02 E-value=5.6e-05 Score=63.17 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=64.1
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL 131 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 131 (180)
--++|...+..|...+ .++.+|||++||.|.=+..+|.. ...|++.|+++.-++.+++|+++.+.. ++
T Consensus 96 Qd~sS~l~~~~L~~~~--~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------nv 166 (470)
T PRK11933 96 QEASSMLPVAALFADD--NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------NV 166 (470)
T ss_pred ECHHHHHHHHHhccCC--CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------eE
Confidence 3455566666654333 36789999999999877777764 258999999999999999999998732 23
Q ss_pred EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.+...+ ...+. ...+..||.|+...|+
T Consensus 167 ~v~~~D---~~~~~---~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 167 ALTHFD---GRVFG---AALPETFDAILLDAPC 193 (470)
T ss_pred EEEeCc---hhhhh---hhchhhcCeEEEcCCC
Confidence 333322 21111 1234579999976653
No 200
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.98 E-value=9.7e-06 Score=60.95 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 73 LQASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.++.+|||-+.|-|+.++.+.+.|+ +|+-++.++.++++|+-|==. .++.-..++....+..+......
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwS----------r~l~~~~i~iilGD~~e~V~~~~ 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWS----------RELFEIAIKIILGDAYEVVKDFD 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCC----------ccccccccEEecccHHHHHhcCC
Confidence 4788999999999999999999998 999999999999998876211 11222222323333333333335
Q ss_pred CCCCcEEEEccccccCC
Q 030274 152 PGGFDLILGADIYILYN 168 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~ 168 (180)
+.+||+||-.||=+...
T Consensus 203 D~sfDaIiHDPPRfS~A 219 (287)
T COG2521 203 DESFDAIIHDPPRFSLA 219 (287)
T ss_pred ccccceEeeCCCccchh
Confidence 66899999999866533
No 201
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=60.13 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=69.7
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
+.+|..+.... ....|+|..||.|.-.+..|..+..|+++|+++.-+..|+.|++.-|. ..++.+.+.+|.
T Consensus 83 ~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI------~~rItFI~GD~l 153 (263)
T KOG2730|consen 83 EHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV------PDRITFICGDFL 153 (263)
T ss_pred HHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC------CceeEEEechHH
Confidence 44455444332 445899999999999999999999999999999999999999999984 236777777777
Q ss_pred CCchhhHHHhhCCCCCcEEEEcccc
Q 030274 140 NSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
+.-... ......+|++..+++-
T Consensus 154 d~~~~l---q~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 154 DLASKL---KADKIKYDCVFLSPPW 175 (263)
T ss_pred HHHHHH---hhhhheeeeeecCCCC
Confidence 542221 2234458899998873
No 202
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.92 E-value=0.00011 Score=58.87 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=67.0
Q ss_pred eecchHHHHHHHHhhCCCCCCCCeEEEeCCcCCh-HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCC-CC--CC
Q 030274 54 LVWPGAMLMNDYLSKNPDVLQASSILELGSGVGV-TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENP-NS--DA 129 (180)
Q Consensus 54 ~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~-~~--~~ 129 (180)
..|=-+.++..++.+.....++.+|||||||-|. +.-+.......++++|++...++.|++..+........ .. .-
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f 121 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF 121 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc
Confidence 3788888888887755444477899999999765 44444444579999999999999999988443211000 00 01
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFF 177 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~ 177 (180)
.......+-... .+...+.....+||+|=|=-.+++ .........++
T Consensus 122 ~a~f~~~D~f~~-~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l 169 (331)
T PF03291_consen 122 IAEFIAADCFSE-SLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFL 169 (331)
T ss_dssp EEEEEESTTCCS-HHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHH
T ss_pred hhheeccccccc-hhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHH
Confidence 111222211111 111111112358999988887765 44444444444
No 203
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=2e-05 Score=59.53 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHh
Q 030274 71 DVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
..+.++.+||+||-+|.+++.+|+. + ..|.++|+++..+..|++|++.-
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3467889999999999999999985 4 58999999999999999998653
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=9e-05 Score=55.59 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=50.4
Q ss_pred CCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 75 ASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
+++++|||+|.|++|+.+|-. ..+|+.+|....-+..++.-...-++. ++.+. .+..+++.. .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-------nv~i~---~~RaE~~~~-----~ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-------NVEIV---HGRAEEFGQ-----E 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-------CeEEe---hhhHhhccc-----c
Confidence 579999999999999998843 467999999887777777666665421 23333 333332211 1
Q ss_pred CC-CcEEEEccc
Q 030274 153 GG-FDLILGADI 163 (180)
Q Consensus 153 ~~-fD~Ii~~d~ 163 (180)
.+ ||+|.+--+
T Consensus 133 ~~~~D~vtsRAv 144 (215)
T COG0357 133 KKQYDVVTSRAV 144 (215)
T ss_pred cccCcEEEeehc
Confidence 13 999998654
No 205
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.4e-05 Score=57.15 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=41.7
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHh
Q 030274 72 VLQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
+.++.+.||+|+|+|+++.+++++ |..++++|.-+++++..++|+...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 348899999999999999998865 345599999999999999999875
No 206
>PLN02823 spermine synthase
Probab=97.88 E-value=6.6e-05 Score=60.19 Aligned_cols=79 Identities=22% Similarity=0.400 Sum_probs=53.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..++||.||+|.|..+..+.+. ..+|+++|+++++++.+++++..++... ...++++. .++. ... +...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~---~dprv~v~---~~Da--~~~-L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF---CDKRLELI---INDA--RAE-LEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc---cCCceEEE---EChh--HHH-HhhC
Confidence 4568999999999888876664 3689999999999999999976543110 11233333 2222 222 2334
Q ss_pred CCCCcEEEEc
Q 030274 152 PGGFDLILGA 161 (180)
Q Consensus 152 ~~~fD~Ii~~ 161 (180)
.++||+|+..
T Consensus 174 ~~~yDvIi~D 183 (336)
T PLN02823 174 DEKFDVIIGD 183 (336)
T ss_pred CCCccEEEec
Confidence 5789999976
No 207
>PHA01634 hypothetical protein
Probab=97.84 E-value=0.00015 Score=49.59 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=44.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 73 LQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..+++|+|+|++.|-.++.++..| .+|++.+.++...+..++|++.|+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 478999999999999999988887 589999999999999999999986
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.82 E-value=0.00018 Score=57.42 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=60.5
Q ss_pred chHHHHHHHHhhCC-------CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274 57 PGAMLMNDYLSKNP-------DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129 (180)
Q Consensus 57 ~~~~~l~~~l~~~~-------~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~ 129 (180)
.++.+|.+.+.... ...++.++|||||++|.++-.+.+.|.+|+++|..+ +- .++..+ .
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~---------~ 252 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDT---------G 252 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCC---------C
Confidence 34566666654432 135788999999999999999999999999999654 22 222222 2
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHH
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
++.....+-.... + ..+.+|+++|.-+.+..-...++...
T Consensus 253 ~V~h~~~d~fr~~------p-~~~~vDwvVcDmve~P~rva~lm~~W 292 (357)
T PRK11760 253 QVEHLRADGFKFR------P-PRKNVDWLVCDMVEKPARVAELMAQW 292 (357)
T ss_pred CEEEEeccCcccC------C-CCCCCCEEEEecccCHHHHHHHHHHH
Confidence 3333322211110 0 14579999887766655444555443
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.80 E-value=8.4e-05 Score=55.54 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHHHHHHHhcCC--CCCCCCCcEEEEEeecCCCchhhH
Q 030274 71 DVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILKKNIEHHTSS--ENPNSDAGLAVAKLEWGNSDQINK 146 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
...++...+|||||.|-.-+.+|.. + .+.+|+|+.+...+.++.+.+..... .-.....++.+...++.+.+....
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3456789999999999877766643 4 56999999998887776655432100 000012234444555554332221
Q ss_pred HHhhCCCCCcEEEEccccccC
Q 030274 147 IIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 147 ~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
. -...|+|++|...|.+
T Consensus 119 ~----~s~AdvVf~Nn~~F~~ 135 (205)
T PF08123_consen 119 I----WSDADVVFVNNTCFDP 135 (205)
T ss_dssp H----GHC-SEEEE--TTT-H
T ss_pred h----hcCCCEEEEeccccCH
Confidence 1 2467999999988763
No 210
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.76 E-value=0.00013 Score=54.22 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCCeEEEeCCcCCh----HHHHHhhc-----C--CeEEEecCCHHHHHHHHHHHHHh-cCCC------------------
Q 030274 74 QASSILELGSGVGV----TGILCSRF-----C--REVLLTDHNEEVLKILKKNIEHH-TSSE------------------ 123 (180)
Q Consensus 74 ~~~~vLdlG~G~G~----~~l~la~~-----~--~~V~~~D~~~~~l~~~~~n~~~n-~~~~------------------ 123 (180)
+..+|+-.||+||- +++.+... + .+++|||+|+.+++.|++-+-.. ....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999993 44445441 2 48999999999999988532110 0000
Q ss_pred --CCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-cc--CCchhhHHHHHHh
Q 030274 124 --NPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-IL--YNRSLLMTSFFQA 179 (180)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~--~~~~~l~~~~~~a 179 (180)
.+.....+.+..++..+.. ...++||+|+|..|+ |. .....+++.|.++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRS 164 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGG
T ss_pred eEChHHcCceEEEecccCCCC-------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHH
Confidence 0011235666666665511 135689999999995 44 2334555555544
No 211
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=61.45 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=75.9
Q ss_pred cCCcCceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCC
Q 030274 48 FDLTGQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNS 127 (180)
Q Consensus 48 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~ 127 (180)
...+|..+|+++..|..++.+++....+.++.++|||++......++..--|...+....+.-....+...+... ..
T Consensus 64 ~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~~-- 140 (262)
T KOG2497|consen 64 LARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDL-SL-- 140 (262)
T ss_pred HHHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhccccc-cc--
Confidence 356788999999999999999998778899999999999888777776555555554444444444443333210 00
Q ss_pred CCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccCCchhhHHHHHH
Q 030274 128 DAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILYNRSLLMTSFFQ 178 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~l~~~~~~ 178 (180)
..+-+.-.++|........ .....+|+|+++|+.|......+++.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~---~~~~~~dll~~AdV~yd~~~~~~~~~~~~ 188 (262)
T KOG2497|consen 141 EVRDSAPELNQAFLESKPE---TSQEFTDLLGGADVIYDTELRHLLETLMT 188 (262)
T ss_pred cccccchhHHHHHHhcCcc---cccchhhheeccCeeehhhhhHHHHHHHH
Confidence 0000111112211110000 01234899999999999665565655543
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.74 E-value=0.00022 Score=55.69 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=36.1
Q ss_pred CCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHH
Q 030274 72 VLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
.+...+|||+|||+|....++... -.+++++|.|+.+++.++.-++.
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 457789999999999755444332 36899999999999988875543
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.70 E-value=0.00019 Score=55.75 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCCeEEEeCCcCC----hHHHHHhhc-------CCeEEEecCCHHHHHHHHHHHHH-----hcCCC---------C----
Q 030274 74 QASSILELGSGVG----VTGILCSRF-------CREVLLTDHNEEVLKILKKNIEH-----HTSSE---------N---- 124 (180)
Q Consensus 74 ~~~~vLdlG~G~G----~~~l~la~~-------~~~V~~~D~~~~~l~~~~~n~~~-----n~~~~---------~---- 124 (180)
..-+|.-.||+|| .+++.+... ..+|+|||+|..+++.|+.-+-. .+.+. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 345554443 25899999999999999843311 11110 0
Q ss_pred ----CCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-cc--CCchhhHHHHHHhC
Q 030274 125 ----PNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-IL--YNRSLLMTSFFQAI 180 (180)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~--~~~~~l~~~~~~al 180 (180)
+.....+.+..++..... ...+.||+|+|-+|+ |. +....++..|.++|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L 231 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-------PFLGKFDLIFCRNVLIYFDEETQERILRRFADSL 231 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-------cccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHh
Confidence 011122333333333221 035689999999994 55 34446666666543
No 214
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.66 E-value=0.00045 Score=51.34 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=55.4
Q ss_pred eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274 77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG 154 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
+|||||||||--+..+|+. .....-+|.++..+...+..+...+...... ...+++..-.|..... ......+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-P~~lDv~~~~w~~~~~----~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-PLALDVSAPPWPWELP----APLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-CeEeecCCCCCccccc----cccCCCC
Confidence 6999999999999888875 4678899999988888887777765321110 1112222222222100 0013568
Q ss_pred CcEEEEccccccC
Q 030274 155 FDLILGADIYILY 167 (180)
Q Consensus 155 fD~Ii~~d~~y~~ 167 (180)
||.|++..+++-.
T Consensus 103 ~D~i~~~N~lHI~ 115 (204)
T PF06080_consen 103 FDAIFCINMLHIS 115 (204)
T ss_pred cceeeehhHHHhc
Confidence 9999999998763
No 215
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=8.8e-05 Score=56.08 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=51.4
Q ss_pred eEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 77 SILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
+|||+|||.|-....+.+- +-+|.+.|.++.+++..++|...+.. ++..-.-+..... + ..+...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~--------~~~afv~Dlt~~~-~--~~~~~~ 142 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES--------RVEAFVWDLTSPS-L--KEPPEE 142 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh--------hhcccceeccchh-c--cCCCCc
Confidence 7999999999877766653 26899999999999999998766531 1111112222211 0 012346
Q ss_pred CCCcEEEEcccc
Q 030274 153 GGFDLILGADIY 164 (180)
Q Consensus 153 ~~fD~Ii~~d~~ 164 (180)
+++|+|++--++
T Consensus 143 ~svD~it~IFvL 154 (264)
T KOG2361|consen 143 GSVDIITLIFVL 154 (264)
T ss_pred CccceEEEEEEE
Confidence 789999887765
No 216
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.62 E-value=0.00053 Score=50.89 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=52.2
Q ss_pred eEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCC
Q 030274 77 SILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGG 154 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
.+||||||.|-..+.+|+. ...++|+|.....+..+...+...++ .++.+...+.... +..+. .+++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-------~Nv~~~~~da~~~--l~~~~--~~~~ 88 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-------KNVRFLRGDAREL--LRRLF--PPGS 88 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-------SSEEEEES-CTTH--HHHHS--TTTS
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-------cceEEEEccHHHH--Hhhcc--cCCc
Confidence 8999999999988888875 58999999999999999888888763 3555555444331 22221 2468
Q ss_pred CcEEEEccc
Q 030274 155 FDLILGADI 163 (180)
Q Consensus 155 fD~Ii~~d~ 163 (180)
+|-|..+-|
T Consensus 89 v~~i~i~FP 97 (195)
T PF02390_consen 89 VDRIYINFP 97 (195)
T ss_dssp EEEEEEES-
T ss_pred hheEEEeCC
Confidence 887665544
No 217
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.59 E-value=0.00036 Score=52.23 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=53.5
Q ss_pred CCCeEEEeCCcCChHHH-HHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE-eecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGI-LCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK-LEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l-~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (180)
...++||.|||.|.++- .|.+...+|-.+|..+..++.|++.+..... + +.. +..+ ++.+.+ .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--------~--v~~~~~~g----LQ~f~P-~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--------R--VGEFYCVG----LQDFTP-E 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--------C--EEEEEES-----GGG-----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--------C--cceEEecC----HhhccC-C
Confidence 45699999999999997 4566678999999999999999987655321 1 222 2222 222221 2
Q ss_pred CCCCcEEEEccccccCCchhhHHHH
Q 030274 152 PGGFDLILGADIYILYNRSLLMTSF 176 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~~~~l~~~~ 176 (180)
..+||+|++-.|+-|-...+++.=|
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL 144 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFL 144 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHH
T ss_pred CCcEeEEEehHhhccCCHHHHHHHH
Confidence 4699999999998775555554433
No 218
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00016 Score=59.13 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=42.3
Q ss_pred CeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCC
Q 030274 76 SSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSS 122 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~ 122 (180)
..|||+|+|||++++++++.|+ .|++++.-..|.+.|++-...|+.+
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 3699999999999999999874 8999999999999999999999843
No 219
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.55 E-value=0.00013 Score=59.23 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=54.7
Q ss_pred CcCceecchHHHHHHH--HhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 50 LTGQLVWPGAMLMNDY--LSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 50 ~~g~~~w~~~~~l~~~--l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
.+|.+.|.+- +..+. +... ..++..|.|+.||.|-+++.+++.+.+|++-|.++++++.++.|+..|..
T Consensus 226 DfskVYWnsR-L~~Eherlsg~--fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 226 DFSKVYWNSR-LSHEHERLSGL--FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred ecceEEeecc-chhHHHHHhhc--cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 3677789843 32222 1111 22677899999999999999999999999999999999999999999973
No 220
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.53 E-value=2.8e-05 Score=57.57 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=69.6
Q ss_pred cCceecchHHHHHHHHhhC-CCC-CCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCC
Q 030274 51 TGQLVWPGAMLMNDYLSKN-PDV-LQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSD 128 (180)
Q Consensus 51 ~g~~~w~~~~~l~~~l~~~-~~~-~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~ 128 (180)
.|...-.+...+.++|.-. +.. ....++||||+|-|-+++.++..-.+|.+|+.|..|...+++. .-|
T Consensus 87 rGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~yn--------- 156 (288)
T KOG3987|consen 87 RGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NYN--------- 156 (288)
T ss_pred cCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CCc---------
Confidence 3444555666777776544 322 2347999999999999999998888999999998888777643 111
Q ss_pred CcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHH
Q 030274 129 AGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFF 177 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~ 177 (180)
+ ...++|.+.+ -+||+|.|-.++-. .++-.|+..+.
T Consensus 157 --V-l~~~ew~~t~----------~k~dli~clNlLDRc~~p~kLL~Di~ 193 (288)
T KOG3987|consen 157 --V-LTEIEWLQTD----------VKLDLILCLNLLDRCFDPFKLLEDIH 193 (288)
T ss_pred --e-eeehhhhhcC----------ceeehHHHHHHHHhhcChHHHHHHHH
Confidence 0 2456777642 47888888776533 34445555443
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.52 E-value=0.00058 Score=51.35 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+.+++||||.-||+.++..|.. +.+|+++|+++...+...+-.+..+.. .++.++.-.- .+.+..++.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------~KI~~i~g~a--~esLd~l~~ 143 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------HKITFIEGPA--LESLDELLA 143 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------ceeeeeecch--hhhHHHHHh
Confidence 36789999999999999888764 689999999999999998888877622 2233322211 123444433
Q ss_pred h-CCCCCcEEEEcc
Q 030274 150 K-YPGGFDLILGAD 162 (180)
Q Consensus 150 ~-~~~~fD~Ii~~d 162 (180)
. ..+.||+++...
T Consensus 144 ~~~~~tfDfaFvDa 157 (237)
T KOG1663|consen 144 DGESGTFDFAFVDA 157 (237)
T ss_pred cCCCCceeEEEEcc
Confidence 2 356899988754
No 222
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.51 E-value=0.00011 Score=57.73 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCeEEEeCCcCC----hHHHHHhhc------CCeEEEecCCHHHHHHHHHHH
Q 030274 75 ASSILELGSGVG----VTGILCSRF------CREVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 75 ~~~vLdlG~G~G----~~~l~la~~------~~~V~~~D~~~~~l~~~~~n~ 116 (180)
.-+|+-.||.|| .+++.+... ..+|+|||+|+.+++.|++-+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 369999999999 344444442 247999999999999998663
No 223
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0024 Score=47.49 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=62.3
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
.++..|.+...+..-..++.+|+||||-.|.++..+++.. .+|+++|+.|- ....++..
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------------~~~~~V~~ 89 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------------KPIPGVIF 89 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------------ccCCCceE
Confidence 3556676666666334467899999999999999999863 34999999763 01234667
Q ss_pred EEeecCCCchhhHHHhhCCC-CCcEEEEc
Q 030274 134 AKLEWGNSDQINKIIQKYPG-GFDLILGA 161 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~fD~Ii~~ 161 (180)
.+.++...+....+...... .+|+|++.
T Consensus 90 iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 90 LQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred EeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 88889988877776555444 46999843
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0021 Score=48.66 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=47.6
Q ss_pred ceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHH
Q 030274 53 QLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEV 108 (180)
Q Consensus 53 ~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~ 108 (180)
..+-.++..|...+....-..+++++||+|+-||-++.++.+.| .+|+++|..-..
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Q 114 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQ 114 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCc
Confidence 34667889999999887766799999999999999999999886 599999987643
No 225
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00056 Score=51.61 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 75 ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
...++|||||.|.+.-.+...+ .+++.+|.|-.|++.++.. +.++ +....+ .++. +. ++....
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~----------i~~~~~-v~DE-E~---Ldf~en 136 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPS----------IETSYF-VGDE-EF---LDFKEN 136 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCc----------eEEEEE-ecch-hc---cccccc
Confidence 3579999999999888776665 6899999999999988753 2222 222222 2222 22 223467
Q ss_pred CCcEEEEcccccc-CCchhhHHHHHH
Q 030274 154 GFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 154 ~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
++|+||++--++| .+-+.-+-.+.+
T Consensus 137 s~DLiisSlslHW~NdLPg~m~~ck~ 162 (325)
T KOG2940|consen 137 SVDLIISSLSLHWTNDLPGSMIQCKL 162 (325)
T ss_pred chhhhhhhhhhhhhccCchHHHHHHH
Confidence 9999999998888 344443444433
No 226
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.26 E-value=0.0007 Score=52.93 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=35.6
Q ss_pred eEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHH
Q 030274 77 SILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~ 117 (180)
+|+||.||.|..++-+.+.|. .|.++|.++.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 699999999999888888775 57889999999999988863
No 227
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.22 E-value=0.00074 Score=50.54 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=43.0
Q ss_pred cchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHH
Q 030274 56 WPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 56 w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~ 114 (180)
-+-...|.+.+.+... .++..|||-.||+|..++++.+++.+.+++|++++..+.|++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3344666666665432 267899999999999999999999999999999999888864
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.22 E-value=0.007 Score=48.80 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=55.3
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
...+||-||.|-|+..-.+.|. -.+++.+|.+|+|++.+++|......+...-...++++..-| .+ ++++..
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD-----Af-~wlr~a 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD-----AF-QWLRTA 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc-----HH-HHHHhh
Confidence 4468999999999988887775 369999999999999999776543322222223445544322 22 223345
Q ss_pred CCCCcEEEEc
Q 030274 152 PGGFDLILGA 161 (180)
Q Consensus 152 ~~~fD~Ii~~ 161 (180)
...||.||..
T Consensus 363 ~~~fD~vIVD 372 (508)
T COG4262 363 ADMFDVVIVD 372 (508)
T ss_pred cccccEEEEe
Confidence 5689998864
No 229
>PRK11524 putative methyltransferase; Provisional
Probab=97.21 E-value=0.0015 Score=51.31 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
..|.+.+.+... .+|..|||-.||+|..++++.+.|.+.+++|++++-.+.+++.+...
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 455555444332 37889999999999999999999999999999999999999998654
No 230
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.20 E-value=0.0051 Score=46.82 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=57.8
Q ss_pred CceecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh--cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 030274 52 GQLVWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR--FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDA 129 (180)
Q Consensus 52 g~~~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~--~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~ 129 (180)
+...+..+..=+.|+.+... ..+++||=+|=+- +.|+++|. ...+|+.+|+++.+++..++.++..+.
T Consensus 23 ~~~T~eT~~~Ra~~~~~~gd-L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------- 92 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERGD-LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------- 92 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT--STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------
T ss_pred ccccHHHHHHHHHHHHhcCc-ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--------
Confidence 33345555555667776654 4789999998443 56666654 458999999999999999999999872
Q ss_pred cEEEEEeecCCCchhhHHHhhCCCCCcEEEEccccccC
Q 030274 130 GLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYILY 167 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~~ 167 (180)
++.....+..+.- .+...++||++++.||+=..
T Consensus 93 ~i~~~~~DlR~~L-----P~~~~~~fD~f~TDPPyT~~ 125 (243)
T PF01861_consen 93 PIEAVHYDLRDPL-----PEELRGKFDVFFTDPPYTPE 125 (243)
T ss_dssp -EEEE---TTS--------TTTSS-BSEEEE---SSHH
T ss_pred ceEEEEecccccC-----CHHHhcCCCEEEeCCCCCHH
Confidence 2666666666551 11246899999999986443
No 231
>PRK00536 speE spermidine synthase; Provisional
Probab=97.19 E-value=0.0036 Score=48.51 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=53.8
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
..++||=+|.|-|...-.+.|...+|+.+|+++++++.+++-+...... -...++.+.. |. .....+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~---~~DpRv~l~~--~~--------~~~~~~ 138 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV---KNNKNFTHAK--QL--------LDLDIK 138 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh---hcCCCEEEee--hh--------hhccCC
Confidence 4579999999999998888887669999999999999999865543211 1123444442 21 111246
Q ss_pred CCcEEEEcc
Q 030274 154 GFDLILGAD 162 (180)
Q Consensus 154 ~fD~Ii~~d 162 (180)
+||+||...
T Consensus 139 ~fDVIIvDs 147 (262)
T PRK00536 139 KYDLIICLQ 147 (262)
T ss_pred cCCEEEEcC
Confidence 899999663
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0045 Score=50.17 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=54.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++.+|||++++.|.=+..+|.. +..|++.|.++.-++.++.|++..|.. ++.+...+-..... ..
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------nv~~~~~d~~~~~~---~~ 224 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------NVIVVNKDARRLAE---LL 224 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------ceEEEecccccccc---cc
Confidence 36789999999998666655554 356899999999999999999999832 22233322221111 00
Q ss_pred hhCCCCCcEEEEcccc
Q 030274 149 QKYPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~ 164 (180)
....+||.|+...|+
T Consensus 225 -~~~~~fD~iLlDaPC 239 (355)
T COG0144 225 -PGGEKFDRILLDAPC 239 (355)
T ss_pred -cccCcCcEEEECCCC
Confidence 012269999988764
No 233
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.15 E-value=0.0082 Score=46.96 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=57.9
Q ss_pred CCCeEEEeCCcCChHHH-HHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGI-LCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l-~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..-+||||.||.|.--+ ++.+. ..+|...|+++..++..++-++.+++.. -+++.+.+-.+.+.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~------i~~f~~~dAfd~~~l~~--- 205 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED------IARFEQGDAFDRDSLAA--- 205 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------ceEEEecCCCCHhHhhc---
Confidence 45699999999996544 33333 2589999999999999999999988432 22455554444333222
Q ss_pred hCCCCCcEEEEcccccc
Q 030274 150 KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~ 166 (180)
...++++++.+-++-.
T Consensus 206 -l~p~P~l~iVsGL~El 221 (311)
T PF12147_consen 206 -LDPAPTLAIVSGLYEL 221 (311)
T ss_pred -cCCCCCEEEEecchhh
Confidence 3457899999997633
No 234
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0096 Score=46.08 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCCCCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274 70 PDVLQASSILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK 146 (180)
Q Consensus 70 ~~~~~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
.+..+|.+|||-|+|+|.++.++++.- .+++-.|+...-.+.+++-++..+ ...++.+..-|....--.
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg------i~~~vt~~hrDVc~~GF~-- 172 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG------IGDNVTVTHRDVCGSGFL-- 172 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC------CCcceEEEEeecccCCcc--
Confidence 345689999999999999999999863 689999999888888888888887 334555555554433110
Q ss_pred HHhhCCCCCcEEEEccc
Q 030274 147 IIQKYPGGFDLILGADI 163 (180)
Q Consensus 147 ~~~~~~~~fD~Ii~~d~ 163 (180)
.....+|.|...=|
T Consensus 173 ---~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 173 ---IKSLKADAVFLDLP 186 (314)
T ss_pred ---ccccccceEEEcCC
Confidence 01345666655443
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.06 E-value=0.0031 Score=49.51 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=61.8
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGL 131 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~ 131 (180)
++..+-.++-.+.. + .++.+|||++|+.|.=+..++.. ...|++.|.++.-+..++.|++..|.. ++
T Consensus 69 vQd~sS~l~~~~L~-~--~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-------~v 138 (283)
T PF01189_consen 69 VQDESSQLVALALD-P--QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-------NV 138 (283)
T ss_dssp EHHHHHHHHHHHHT-T--TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-------SE
T ss_pred eccccccccccccc-c--cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-------eE
Confidence 55555444443332 2 26778999999999877777664 269999999999999999999998732 23
Q ss_pred EEEEeecCCCchhhHHHhhCCCCCcEEEEcccc
Q 030274 132 AVAKLEWGNSDQINKIIQKYPGGFDLILGADIY 164 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~ 164 (180)
.+.. . +............||.|+...|.
T Consensus 139 ~~~~---~--D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 139 IVIN---A--DARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp EEEE---S--HHHHHHHHHHTTTEEEEEEECSC
T ss_pred EEEe---e--ccccccccccccccchhhcCCCc
Confidence 3333 2 21111111123469999987764
No 236
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.06 E-value=0.0013 Score=48.02 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=39.3
Q ss_pred chHHHHHHHHhhCCCCC--CCCeEEEeCCcCChHHHHHhhcC---CeEEEecCCHH
Q 030274 57 PGAMLMNDYLSKNPDVL--QASSILELGSGVGVTGILCSRFC---REVLLTDHNEE 107 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~--~~~~vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~ 107 (180)
.++.+|.+.+.+..-.. .+.+||||||++|.++..+.+.+ .+|+++|..+.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 46677887777655222 44799999999999999999877 79999999765
No 237
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.06 E-value=0.0016 Score=50.15 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+.++||=||.|.|...-.+.+.. .+|+++|+++.+++.+++-+...... ....++++. .++. .. ++...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~---~~d~r~~i~---~~Dg--~~-~l~~~ 146 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG---LDDPRVRII---IGDG--RK-FLKET 146 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT---GGSTTEEEE---ESTH--HH-HHHTS
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc---cCCCceEEE---Ehhh--HH-HHHhc
Confidence 56799999999998888887764 79999999999999999987764311 012234443 2222 22 23334
Q ss_pred CC-CCcEEEEc
Q 030274 152 PG-GFDLILGA 161 (180)
Q Consensus 152 ~~-~fD~Ii~~ 161 (180)
.. +||+|+..
T Consensus 147 ~~~~yDvIi~D 157 (246)
T PF01564_consen 147 QEEKYDVIIVD 157 (246)
T ss_dssp SST-EEEEEEE
T ss_pred cCCcccEEEEe
Confidence 45 89999974
No 238
>PRK13699 putative methylase; Provisional
Probab=97.03 E-value=0.0033 Score=47.75 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
..|.+.+.+... .++..|||-.||+|..++++.+.|.+++++|++++-.+.+.+.++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 455555554322 26789999999999999999999999999999999999998887664
No 239
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0031 Score=47.84 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=39.7
Q ss_pred CeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 76 SSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..+||||||.|-.-+.+|+.. ..++|+|+....+..+.+.+...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~ 96 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG 96 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC
Confidence 489999999999999888874 689999999999998888888876
No 240
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.02 E-value=0.00079 Score=53.55 Aligned_cols=84 Identities=21% Similarity=0.181 Sum_probs=59.5
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHH-------HHHHHHHHhcCCCCCCCCCcEEEEEeecCCCch
Q 030274 71 DVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLK-------ILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQ 143 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
...+|+.|+|=..|||.+-+..|+.|+-|+++|++-.++. ..+.|++..+.+ ..-+.+...|+.+..-
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~-----~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-----SQFLDVLTADFSNPPL 279 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc-----chhhheeeecccCcch
Confidence 3457889999999999998899999999999999887766 345666665521 1123345555554421
Q ss_pred hhHHHhhCCCCCcEEEEccccc
Q 030274 144 INKIIQKYPGGFDLILGADIYI 165 (180)
Q Consensus 144 ~~~~~~~~~~~fD~Ii~~d~~y 165 (180)
. ....||.|||.||+=
T Consensus 280 -----r-sn~~fDaIvcDPPYG 295 (421)
T KOG2671|consen 280 -----R-SNLKFDAIVCDPPYG 295 (421)
T ss_pred -----h-hcceeeEEEeCCCcc
Confidence 1 145899999999863
No 241
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0041 Score=48.77 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=54.1
Q ss_pred CeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 76 SSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++||-||-|.|...-.+.+.. .+++.+|+++.+++.+++-+........ ..++.+. ..+. . .+++....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~---dpRv~i~---i~Dg--~-~~v~~~~~ 148 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD---DPRVEII---IDDG--V-EFLRDCEE 148 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC---CCceEEE---eccH--H-HHHHhCCC
Confidence 699999999999999888875 7999999999999999988765431110 1233322 2222 2 22333455
Q ss_pred CCcEEEEcc
Q 030274 154 GFDLILGAD 162 (180)
Q Consensus 154 ~fD~Ii~~d 162 (180)
+||+||..-
T Consensus 149 ~fDvIi~D~ 157 (282)
T COG0421 149 KFDVIIVDS 157 (282)
T ss_pred cCCEEEEcC
Confidence 899999754
No 242
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.93 E-value=0.0044 Score=46.37 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=39.3
Q ss_pred EEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 78 ILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 78 vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
|.|+||-=|++++.|.+.+ .+|+++|+++..++.|++|++..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l 46 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL 46 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999987 4899999999999999999999873
No 243
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.90 E-value=0.0029 Score=53.44 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhc-C-----CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCSRF-C-----REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~-~-----~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
+..+|+|-.||+|..-+..++. + ...++.|.++....+++.|.-.++.. . ...+...+.+..-
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----------~-~~~i~~~dtl~~~ 254 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----------G-DANIRHGDTLSNP 254 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----------c-cccccccccccCC
Confidence 4459999999999766655542 1 45899999999999999999999732 1 2223333222211
Q ss_pred H---hhCCCCCcEEEEccccc
Q 030274 148 I---QKYPGGFDLILGADIYI 165 (180)
Q Consensus 148 ~---~~~~~~fD~Ii~~d~~y 165 (180)
. .....+||+|+++||+.
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred cccccCCccceeEEEeCCCCC
Confidence 1 11346799999999987
No 244
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.89 E-value=0.00065 Score=53.02 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCeEEEeCCcCChHHH-HHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCC
Q 030274 74 QASSILELGSGVGVTGI-LCSRFC-REVLLTDHNEEVLKILKKNIEHHTSS 122 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l-~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~ 122 (180)
.+..|.||.+|.|++.+ .+.+.| +.|++.|.+|.+++.+++|++.|+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 45789999999999999 677776 58999999999999999999999743
No 245
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.86 E-value=0.0074 Score=47.83 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=60.2
Q ss_pred ecchHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEE
Q 030274 55 VWPGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAV 133 (180)
Q Consensus 55 ~w~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 133 (180)
+|=-+.++-.|.. ++..+++||||-|-=.+-.-+.| ..++++|+....++.|++......-... ...-.+.+
T Consensus 104 NwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~f~a~f 176 (389)
T KOG1975|consen 104 NWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFIFTAVF 176 (389)
T ss_pred HHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-cccceeEE
Confidence 4555555554442 55689999999987666555555 6899999999999999988876531100 00001222
Q ss_pred EEeecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 134 AKLEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
...+-... .+...++....+||+|=|--++++
T Consensus 177 ~~~Dc~~~-~l~d~~e~~dp~fDivScQF~~HY 208 (389)
T KOG1975|consen 177 IAADCFKE-RLMDLLEFKDPRFDIVSCQFAFHY 208 (389)
T ss_pred EEeccchh-HHHHhccCCCCCcceeeeeeeEee
Confidence 22221111 122222222345999877777655
No 246
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0041 Score=50.02 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=41.9
Q ss_pred CCeEEEeCCcCChHHHHHhhc-CC-eEEEecCCHHHHHHHHHHHHHhc
Q 030274 75 ASSILELGSGVGVTGILCSRF-CR-EVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..+|+|--||||+=|+..|.- +. +|++-|+||.+.+.+++|+..|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~ 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC
Confidence 679999999999999998875 34 89999999999999999999993
No 247
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.72 E-value=0.0031 Score=49.93 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=48.6
Q ss_pred eEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274 77 SILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF 155 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (180)
+++||.||.|.+++-+.+.|. -|.++|+++.+.+..+.|.. . ....|....+. ..+ + . .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~-------------~~~~Di~~~~~-~~l-~--~-~~ 62 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-E-------------VICGDITEIDP-SDL-P--K-DV 62 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-E-------------EEESHGGGCHH-HHH-H--H-T-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-c-------------ccccccccccc-ccc-c--c-cc
Confidence 799999999999999888884 68999999999999999876 2 34444443321 121 1 2 59
Q ss_pred cEEEEcccccc
Q 030274 156 DLILGADIYIL 166 (180)
Q Consensus 156 D~Ii~~d~~y~ 166 (180)
|++++.+|+-.
T Consensus 63 D~l~ggpPCQ~ 73 (335)
T PF00145_consen 63 DLLIGGPPCQG 73 (335)
T ss_dssp SEEEEE---TT
T ss_pred eEEEeccCCce
Confidence 99999998633
No 248
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.62 E-value=0.0067 Score=45.38 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=39.7
Q ss_pred hHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHh
Q 030274 58 GAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
+++.+.+.+.-... ...-++-|=+||.|++--.+.-+ -..|+++|++++++++|++|+...
T Consensus 36 AsEi~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 36 ASEIFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp HHHHHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 33444444433222 24458999999999765554432 368999999999999999998754
No 249
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.57 E-value=0.0062 Score=48.13 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred EEEeCCcCChH-HHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCC
Q 030274 78 ILELGSGVGVT-GILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGF 155 (180)
Q Consensus 78 vLdlG~G~G~~-~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (180)
=+|||.|+-.+ .+.=++ .++..++||++...++.++.|+..|+.+ ..+.+....-...--.+.........|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------s~ikvV~~~~~ktll~d~~~~~~e~~y 179 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------SLIKVVKVEPQKTLLMDALKEESEIIY 179 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc------cceeeEEecchhhcchhhhccCcccee
Confidence 47887776432 222223 3678999999999999999999999743 344444432221111111111123469
Q ss_pred cEEEEccccccC
Q 030274 156 DLILGADIYILY 167 (180)
Q Consensus 156 D~Ii~~d~~y~~ 167 (180)
|+..||||+|..
T Consensus 180 dFcMcNPPFfe~ 191 (419)
T KOG2912|consen 180 DFCMCNPPFFEN 191 (419)
T ss_pred eEEecCCchhhc
Confidence 999999999985
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.52 E-value=0.029 Score=42.17 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=42.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhcC
Q 030274 74 QASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHTS 121 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~ 121 (180)
++.++.|+||-=|++...+.+.+ ..+++.|+++..++.|.+|+..++.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l 65 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL 65 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC
Confidence 34469999999999999988864 6899999999999999999999973
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.48 E-value=0.035 Score=44.02 Aligned_cols=90 Identities=10% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
+|.+.+.+.....++..++|.=+|.|.-+..+++. ..+|+++|.++.+++.++++++... .++.+.+-++
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--------~R~~~i~~nF 78 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--------GRVVLIHDNF 78 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--------CcEEEEeCCH
Confidence 34444444444446779999999999888877764 3799999999999999999876542 2355554444
Q ss_pred CCCchhhHHHhh-CCCCCcEEEEc
Q 030274 139 GNSDQINKIIQK-YPGGFDLILGA 161 (180)
Q Consensus 139 ~~~~~~~~~~~~-~~~~fD~Ii~~ 161 (180)
.+. ...+.. ...++|.|+..
T Consensus 79 ~~l---~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 79 ANF---FEHLDELLVTKIDGILVD 99 (305)
T ss_pred HHH---HHHHHhcCCCcccEEEEe
Confidence 432 222221 22467776653
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.27 E-value=0.074 Score=40.82 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
...+|+|||||.=-+++..... +..+++.|++..+++.+..-+...+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~ 153 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG 153 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence 4679999999998888755543 4799999999999999998887775
No 253
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.19 E-value=0.0066 Score=49.58 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++.+|||.=||+|+=|+..++. + .+|++-|+|+++++.+++|++.|+... ..+.+. ..+... ++..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-----~~~~v~---~~DAn~---ll~~ 117 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-----ERIEVS---NMDANV---LLYS 117 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-----CCEEEE---ES-HHH---HHCH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-----ceEEEe---hhhHHH---Hhhh
Confidence 3458999999999999998876 2 699999999999999999999998431 023332 222221 1112
Q ss_pred CCCCCcEEEEcc
Q 030274 151 YPGGFDLILGAD 162 (180)
Q Consensus 151 ~~~~fD~Ii~~d 162 (180)
....||+|=..|
T Consensus 118 ~~~~fD~IDlDP 129 (377)
T PF02005_consen 118 RQERFDVIDLDP 129 (377)
T ss_dssp STT-EEEEEE--
T ss_pred ccccCCEEEeCC
Confidence 466899885544
No 254
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.12 E-value=0.028 Score=47.81 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 74 QASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.+..+||||||.|-..+.+|+. ...++|+|.....+..+.+.+...+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~ 395 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN 395 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC
Confidence 3568999999999988888876 4789999999987777777766654
No 255
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.11 E-value=0.012 Score=39.22 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCC
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHN 105 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~ 105 (180)
+....+|||||.|++--.|.+-|.+-.++|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34579999999999999999999988999974
No 256
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.02 E-value=0.095 Score=35.54 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=28.8
Q ss_pred EEEeCCcCChHHHHHhhcC---CeEEEecCCHHHHHHHHHHH
Q 030274 78 ILELGSGVGVTGILCSRFC---REVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 78 vLdlG~G~G~~~l~la~~~---~~V~~~D~~~~~l~~~~~n~ 116 (180)
++|+|||+|... .+++.. ..++++|.++.++..++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999865 333332 48999999999888855443
No 257
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.87 E-value=0.025 Score=45.89 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSR-FCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~ 113 (180)
..|.+.+.+......-..|+|+|+|.|.++-+++- .|..|.++|.|....+.++
T Consensus 139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 44555555544434556899999999999998885 4789999999976665554
No 258
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.78 E-value=0.016 Score=46.28 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=34.4
Q ss_pred EEEeCCcCChHHHHHhhcCCeE-EEecCCHHHHHHHHHHHH
Q 030274 78 ILELGSGVGVTGILCSRFCREV-LLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 78 vLdlG~G~G~~~l~la~~~~~V-~~~D~~~~~l~~~~~n~~ 117 (180)
|+||.||.|..++-+.+.|.++ .++|+++.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 6899999999998888888765 679999999999888853
No 259
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.73 E-value=0.048 Score=38.99 Aligned_cols=69 Identities=12% Similarity=-0.018 Sum_probs=41.8
Q ss_pred EEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEEEEcccccc-CCchhhHHHHHH
Q 030274 100 LLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLILGADIYIL-YNRSLLMTSFFQ 178 (180)
Q Consensus 100 ~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~l~~~~~~ 178 (180)
+++|.|++|++.|+++....+.. ...++.+...+..+. +...++||+|+++.++.+ .+....++.+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~----~~~~i~~~~~d~~~l-------p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS----CYKCIEWIEGDAIDL-------PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc----CCCceEEEEechhhC-------CCCCCCeeEEEecchhhcCCCHHHHHHHHHH
Confidence 48999999999998776542210 011244443332221 224568999999988765 566665655554
Q ss_pred h
Q 030274 179 A 179 (180)
Q Consensus 179 a 179 (180)
.
T Consensus 70 v 70 (160)
T PLN02232 70 V 70 (160)
T ss_pred H
Confidence 3
No 260
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.12 Score=40.62 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCCCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 71 DVLQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
....++.||==|+|.|+ +++.+|++|++++..|+++...+...+.++.+| ++..-.-|..+.+++...
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---------~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---------EAKAYTCDISDREEIYRL 104 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---------ceeEEEecCCCHHHHHHH
Confidence 34578899999999985 777788899999999999987777777766654 345566677777655443
Q ss_pred ---HhhCCCCCcEEEEccc
Q 030274 148 ---IQKYPGGFDLILGADI 163 (180)
Q Consensus 148 ---~~~~~~~fD~Ii~~d~ 163 (180)
.+..-+..|++|-|--
T Consensus 105 a~~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHHHhcCCceEEEeccc
Confidence 3345678999888764
No 261
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.034 Score=44.59 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=37.3
Q ss_pred CCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHHH
Q 030274 75 ASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~ 117 (180)
..+++||.||.|.+.+-+...|. -+.++|+++.+++..+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 45899999999999988888885 57899999999999988865
No 262
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.66 E-value=0.029 Score=44.78 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCCeEEEeCCcCChH-HHHHhh---c--CCeEEEecCCHHHHHHHHHHHH
Q 030274 74 QASSILELGSGVGVT-GILCSR---F--CREVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~-~l~la~---~--~~~V~~~D~~~~~l~~~~~n~~ 117 (180)
++..++|+|||.|.= .+.|.. . ...++++|+|.++++.+..++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 556899999999963 333222 2 3679999999999999999987
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.62 E-value=0.017 Score=48.33 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=36.1
Q ss_pred CceecchHHHHHHHHhhCCCC--CCC--CeEEEeCCcCChHHHHHhhcCCeEEEe---cCCHHHHHHHH
Q 030274 52 GQLVWPGAMLMNDYLSKNPDV--LQA--SSILELGSGVGVTGILCSRFCREVLLT---DHNEEVLKILK 113 (180)
Q Consensus 52 g~~~w~~~~~l~~~l~~~~~~--~~~--~~vLdlG~G~G~~~l~la~~~~~V~~~---D~~~~~l~~~~ 113 (180)
|.....++..-.+.|.+.... ..+ ..+||+|||+|.+|..+...+-.+..+ |..+..++.|.
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence 444444555555555554322 122 479999999999999888876433332 34334444443
No 264
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.48 E-value=0.021 Score=43.79 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~ 113 (180)
.|+.++.+........+++|..||+|.+++.+.+.+.+|+.-|+++.++...+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 35566665433225679999999999999888778889999999997666555
No 265
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.31 E-value=0.078 Score=42.21 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=39.7
Q ss_pred CCCCCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274 69 NPDVLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK 114 (180)
Q Consensus 69 ~~~~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~ 114 (180)
..+...+.+||=+|||. |+.++..|+. | .+|+.+|.++.-++.|++
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34455788999999998 9999988885 5 699999999999999998
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.08 E-value=0.022 Score=43.33 Aligned_cols=85 Identities=11% Similarity=0.180 Sum_probs=42.6
Q ss_pred CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCC--CCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENP--NSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
.+|||.=+|-|.=++.+|..|.+|++++.|+-+...++.-++........ ....++++.+.+-... +.....
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~------L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY------LRQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH------CCCHSS
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH------HhhcCC
Confidence 38999999999999999989999999999996655555444332100000 0012455544433321 112356
Q ss_pred CCcEEEEcccccc
Q 030274 154 GFDLILGADIYIL 166 (180)
Q Consensus 154 ~fD~Ii~~d~~y~ 166 (180)
+||+|-..|++-+
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 8999999766544
No 267
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.074 Score=37.65 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
+.+.+.|.-.+. .+..+.+|||+|-|.+-+..++.| ..-++++.++-.+...+...-..+
T Consensus 59 eQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 59 EQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred HHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh
Confidence 444444443333 244589999999999999999998 688999999988888887776665
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.99 E-value=0.11 Score=41.68 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCCCCCeEEEeCCc-CChHHHHHhh-cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 71 DVLQASSILELGSG-VGVTGILCSR-FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 71 ~~~~~~~vLdlG~G-~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
...++++|+=.|+| .|..++.+|+ .|++|+++|.+++-++.+++--. ...+++.+.+.....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~~~~~~~~~- 226 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSSDSDALEAV- 226 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcCCchhhHHh-
Confidence 34578899999997 3678888888 68999999999998888876411 234445433333222
Q ss_pred hhCCCCCcEEEEccc
Q 030274 149 QKYPGGFDLILGADI 163 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~ 163 (180)
.+.||+|+..-+
T Consensus 227 ---~~~~d~ii~tv~ 238 (339)
T COG1064 227 ---KEIADAIIDTVG 238 (339)
T ss_pred ---HhhCcEEEECCC
Confidence 234999887765
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.97 E-value=0.3 Score=38.22 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCeEEEeCCcC-ChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHH-HhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 75 ASSILELGSGV-GVTGILCSRF---CREVLLTDHNEEVLKILKKNIE-HHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 75 ~~~vLdlG~G~-G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++|+=||||. -+.++.+++. +..|+++|+++++.+.+++-+. ..++ ..++.+...+-....
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L------~~~m~f~~~d~~~~~------- 187 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL------SKRMSFITADVLDVT------- 187 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------SSEEEEES-GGGG--------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc------cCCeEEEecchhccc-------
Confidence 35999999997 8999999864 4689999999999999988776 2221 234555554433221
Q ss_pred hCCCCCcEEEEcccccc
Q 030274 150 KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~y~ 166 (180)
..-..||+|+.+-.+..
T Consensus 188 ~dl~~~DvV~lAalVg~ 204 (276)
T PF03059_consen 188 YDLKEYDVVFLAALVGM 204 (276)
T ss_dssp GG----SEEEE-TT-S-
T ss_pred cccccCCEEEEhhhccc
Confidence 11358999998887763
No 270
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.88 E-value=0.15 Score=39.87 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
..++.|+=+| ---+.|++++-- ..+|..+|+++..++..++-++..++. ++.+..++..++- .. .
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-------~ie~~~~Dlr~pl--pe---~ 217 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-------NIEAFVFDLRNPL--PE---D 217 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-------chhheeehhcccC--hH---H
Confidence 4678899998 556777766654 479999999999999999988887632 3555566666542 11 2
Q ss_pred CCCCCcEEEEcccc
Q 030274 151 YPGGFDLILGADIY 164 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~ 164 (180)
..++||+++..||.
T Consensus 218 ~~~kFDvfiTDPpe 231 (354)
T COG1568 218 LKRKFDVFITDPPE 231 (354)
T ss_pred HHhhCCeeecCchh
Confidence 35799999998874
No 271
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.76 E-value=0.16 Score=38.34 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=54.2
Q ss_pred CCCCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 73 LQASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
.++.+||++|=|.|++.-.+-... .+=+.++..+.+++.++.+.-.. ..++.+....|.+.- ..+ .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--------k~nViil~g~WeDvl--~~L---~ 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--------KENVIILEGRWEDVL--NTL---P 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--------ccceEEEecchHhhh--ccc---c
Confidence 377899999999999887776553 45567899999999998875333 245667777888752 222 4
Q ss_pred CCCCcEEEE
Q 030274 152 PGGFDLILG 160 (180)
Q Consensus 152 ~~~fD~Ii~ 160 (180)
.+.||-|.-
T Consensus 167 d~~FDGI~y 175 (271)
T KOG1709|consen 167 DKHFDGIYY 175 (271)
T ss_pred ccCcceeEe
Confidence 567998764
No 272
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.13 Score=41.55 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCC---CCCCCeEEEeCCcCChHHHHHhhc----------CCeEEEecCCHHHHHHHHHHHHHh
Q 030274 60 MLMNDYLSKNPD---VLQASSILELGSGVGVTGILCSRF----------CREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 60 ~~l~~~l~~~~~---~~~~~~vLdlG~G~G~~~l~la~~----------~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
+.++.|+.+... ......++|+|+|.|.++.-+.+. ..++..++.|++....=+++++.-
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 566777665322 223458999999999877654431 368999999998877777766554
No 273
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.5 Score=36.33 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++++|=.|++.|+ ++..+++.|++|++++.++..++.+.+.+.... ..++.....|..+.+.+..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-------NVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------CCceEEEEecCCCHHHHHHHHH
Confidence 367789999987764 333455568999999998877666665554321 1246667778887765554433
Q ss_pred h--CCCCCcEEEEccc
Q 030274 150 K--YPGGFDLILGADI 163 (180)
Q Consensus 150 ~--~~~~fD~Ii~~d~ 163 (180)
. ..++.|+++.+--
T Consensus 79 ~~~~~g~iD~lv~nag 94 (263)
T PRK08339 79 ELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHhhCCCcEEEECCC
Confidence 2 1357899887753
No 274
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.52 E-value=0.098 Score=38.23 Aligned_cols=42 Identities=33% Similarity=0.443 Sum_probs=31.9
Q ss_pred eEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274 77 SILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 77 ~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
+|.=+|+|+ | .++..++..|.+|+..|.+++.++.+++.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 356688887 5 56667777899999999999999888877665
No 275
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.43 E-value=0.28 Score=41.32 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCeEEEeCCcCChHHHHHhhcCC-eEEEecCCHHHHHHHHHHH
Q 030274 75 ASSILELGSGVGVTGILCSRFCR-EVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~~-~V~~~D~~~~~l~~~~~n~ 116 (180)
..+++||.||.|.+++-+-..|. -|.++|.++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 45999999999988888877775 5688999999988888885
No 276
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.26 E-value=0.69 Score=35.04 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=40.4
Q ss_pred CceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHH
Q 030274 52 GQLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILK 113 (180)
Q Consensus 52 g~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~ 113 (180)
..++|..- -.|+..+..- ....++.+||=||+.+|..--.++.. ...|++++.++.....+-
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL 115 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH
Confidence 55677654 4566655443 33457889999999999877777664 358999999996555443
No 277
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.53 Score=35.46 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=49.2
Q ss_pred CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++++=.|+. |.+|..+ ++.|.+|++++.+++-.+...+++.... ..++.+...|..+...+..+....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-------AVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-------CCeEEEEecCCCChHHHHHHHHHH
Confidence 467877754 4445544 3458899999998866555444444332 234667777777766555554433
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
..++|+++.+-
T Consensus 74 ~~~~d~vv~~a 84 (243)
T PRK07102 74 PALPDIVLIAV 84 (243)
T ss_pred hhcCCEEEECC
Confidence 34679988765
No 278
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.55 Score=35.65 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|++.|+ ++..+++.|.+|++++.+++.++.+...+...+ .++.....|..+.+....+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--------GKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHHH
Confidence 367899999987664 233345568999999998877666655554432 235566777777655544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+.-+
T Consensus 79 ~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1 23578999987654
No 279
>PRK06125 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.86 Score=34.72 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=54.3
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|++++.+++.++.+...+.... ..++.....|..+.+.+..+...
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-------GVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-------CCceEEEEecCCCHHHHHHHHHH
Confidence 56789999986653 222345568899999998876666555554331 12455677788776665555433
Q ss_pred CCCCCcEEEEcccc
Q 030274 151 YPGGFDLILGADIY 164 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~ 164 (180)
.++.|+++.+.-.
T Consensus 79 -~g~id~lv~~ag~ 91 (259)
T PRK06125 79 -AGDIDILVNNAGA 91 (259)
T ss_pred -hCCCCEEEECCCC
Confidence 3579999888654
No 280
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.18 E-value=0.1 Score=35.76 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCCCCCCeEEEeCCcC-ChHHHHHhhcCCeEEEecCCHH
Q 030274 61 LMNDYLSKNPDVLQASSILELGSGV-GVTGILCSRFCREVLLTDHNEE 107 (180)
Q Consensus 61 ~l~~~l~~~~~~~~~~~vLdlG~G~-G~~~l~la~~~~~V~~~D~~~~ 107 (180)
.+++|+.++. ...+|+|+|-|- --.+..|++.|..|++||+++.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 4677777543 334999999987 4677788888999999999986
No 281
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.07 E-value=0.37 Score=39.54 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=51.9
Q ss_pred CeEEEeCCcC-ChHHH-HHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC
Q 030274 76 SSILELGSGV-GVTGI-LCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP 152 (180)
Q Consensus 76 ~~vLdlG~G~-G~~~l-~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++||=||||. |.... .+|+.+ .+|+..|-+.+..+.+..+... +++...+|-.+.+.+..++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----------~v~~~~vD~~d~~al~~li---- 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----------KVEALQVDAADVDALVALI---- 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----------cceeEEecccChHHHHHHH----
Confidence 4799999964 54333 345556 7999999998766666554322 3667888888876665553
Q ss_pred CCCcEEEEcccccc
Q 030274 153 GGFDLILGADIYIL 166 (180)
Q Consensus 153 ~~fD~Ii~~d~~y~ 166 (180)
..+|+||.+=+.|.
T Consensus 67 ~~~d~VIn~~p~~~ 80 (389)
T COG1748 67 KDFDLVINAAPPFV 80 (389)
T ss_pred hcCCEEEEeCCchh
Confidence 35599888877655
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.97 E-value=0.11 Score=44.27 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=36.3
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
.++.+|+=+|||. |+.++..|+ .|++|+++|.+++.++.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4678999999998 999988777 48899999999988887775
No 283
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.97 E-value=0.13 Score=38.50 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=28.5
Q ss_pred ecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274 55 VWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE 106 (180)
Q Consensus 55 ~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~ 106 (180)
-||.. ..+.+||.+.+ +...|-|+|||-+.++..+. .+.+|...|..+
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva 103 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA 103 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc-cCceEEEeeccC
Confidence 68776 56788887664 45799999999998885543 345688888753
No 284
>PRK08862 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.57 Score=35.31 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++++|=.|++.|+ ++..+++.|.+|+.++.+++.++.+.+.+...+ .++.....+..+.+....+...
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--------~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--------DNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------CCeEEEEccCCCHHHHHHHHHH
Confidence 56789999998875 344456678999999998887776665555433 1233445566655555444321
Q ss_pred ---CCC-CCcEEEEcc
Q 030274 151 ---YPG-GFDLILGAD 162 (180)
Q Consensus 151 ---~~~-~fD~Ii~~d 162 (180)
..+ +.|+++.+-
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 123 799999886
No 285
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.69 E-value=0.75 Score=34.93 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=53.4
Q ss_pred CCCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+.+++||=.|+ +|.+|..+++ .|++|++++.++..++.+...+...+ .++.....|..+.+.+..+.
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--------LSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------ceEEEEEccCCCHHHHHHHH
Confidence 36789999986 4445555443 58899999998876665555554432 23556667777766554443
Q ss_pred h---hCCCCCcEEEEcccc
Q 030274 149 Q---KYPGGFDLILGADIY 164 (180)
Q Consensus 149 ~---~~~~~fD~Ii~~d~~ 164 (180)
. ...++.|+++.+.-.
T Consensus 79 ~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 2 123578999888754
No 286
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.85 Score=36.56 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=56.1
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
.+++||=.|++.|+ ++..+++.|++|++++.+++.++.+.+.+...+ .++.+...|..+.+.+..+..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--------~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--------AEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEeeCCCHHHHHHHHHH
Confidence 56789988886653 233345568999999999887777766665543 245566778887765554432
Q ss_pred --hCCCCCcEEEEcccc
Q 030274 150 --KYPGGFDLILGADIY 164 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~ 164 (180)
...+++|++|.+--+
T Consensus 78 ~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 123679999888643
No 287
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.95 Score=34.27 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.|+ |.. +++.|++|+.++.+++-++.+.+.+...+ .++.....|..+.+.+..+..
T Consensus 6 ~~k~ilItGas~~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 6 SGKVALVTGGAAGI-GRATALAFAREGAKVVVADRDAAGGEETVALIREAG--------GEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence 57789999986553 333 44568899999998876665555554432 245667777777655444322
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..+++|+|+.+--+
T Consensus 77 ~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1 23578999987654
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.53 E-value=0.21 Score=40.42 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=35.7
Q ss_pred CCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHHH
Q 030274 74 QASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKKN 115 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~n 115 (180)
++.+|+=+|||. |++++.+++. | .+|+++|.+++-++.|++-
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 444899999998 9999888875 4 6999999999999988873
No 289
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.99 Score=34.46 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|++.|+ ++..+++.|++|++++.+++.++.+.+.+.... ...++.....|..+.+.+..+..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF------PGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC------CCceEEEEEecCCCHHHHHHHHH
Confidence 367789999987664 233344568999999998876666555544321 11245566778887765544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+--+
T Consensus 80 ~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 1 23578998887643
No 290
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.35 E-value=1.1 Score=33.80 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=51.9
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++||=.|++.|+ ++..+++.|++|++++.++..++.+.+.+...+ .++.....+..+.+....+..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--------GKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHHH
Confidence 356789999987764 222344568999999998776666555554332 234456667776655443322
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..++.|+++.+--
T Consensus 78 ~~~~~~~~id~li~~ag 94 (252)
T PRK07035 78 HIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1 2346899987664
No 291
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.28 E-value=1 Score=34.88 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+.++++|=.|++.|+ ++..+++.|++|+.++.++..++.+.+.+...+ .++.....|..+.+.+..+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--------FDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEeCCCCCHHHHHHHHH
Confidence 467789988887664 223344568999999998766665544444332 235566777777665544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|++|.+--+
T Consensus 76 ~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1 23578998887643
No 292
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.24 E-value=0.7 Score=35.06 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
++++++|=.|++.|+ |.. +++.|++|++++.+++.++.+...++..+ .++.....|..+.+.+..+.
T Consensus 9 ~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 9 LAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--------GAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHH
Confidence 367889989976553 443 44458999999998876666655555432 23556777877765544433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|.++.+--.
T Consensus 80 ~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 21 23478999987653
No 293
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.23 E-value=0.2 Score=38.59 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCeEEEeCCcCChHHHHHhhc----------CCeEEEecCCHHHHHHHHHHHHH
Q 030274 75 ASSILELGSGVGVTGILCSRF----------CREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~----------~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
..+|+|+|+|.|.++.-+.+. ..+++.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999887755442 14899999999887777777654
No 294
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.21 E-value=1.4 Score=33.29 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+++||=.|++. .+|..++ +.|.+|++++.+++.++.+...+...+ .++.+...|..+.+.+....
T Consensus 7 ~~~k~ilItGasg-~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 7 LEGKVALVTGASS-GLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--------GAAHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHH
Confidence 3677899998544 4455444 457899999998877666655544322 23556777777665444432
Q ss_pred h---hCCCCCcEEEEcccc
Q 030274 149 Q---KYPGGFDLILGADIY 164 (180)
Q Consensus 149 ~---~~~~~fD~Ii~~d~~ 164 (180)
. ...+++|+|+.+.-.
T Consensus 78 ~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 78 AHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 2 123578999887754
No 295
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.15 Score=41.23 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 71 DVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
..+..++|||+|.|.|....++-.. -..++.++.|+ ++...-..+..|- .....+|...+.....
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv-----------~t~~td~r~s~vt~dR 177 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENV-----------STEKTDWRASDVTEDR 177 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhc-----------ccccCCCCCCccchhc
Confidence 4567788999999998644333332 25778888876 4444444555552 2334667666533332
Q ss_pred Hhh-CCCCCcEEEEccccccC
Q 030274 148 IQK-YPGGFDLILGADIYILY 167 (180)
Q Consensus 148 ~~~-~~~~fD~Ii~~d~~y~~ 167 (180)
++. ....|++++..+=+-+.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d 198 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPD 198 (484)
T ss_pred cCCCccceeehhhhhhhhccc
Confidence 222 23478888888766553
No 296
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.14 E-value=1.6 Score=34.50 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..++++|=.|++.|+ ++..+++.|++|+.+.-+.+-.+.+.+.+.... ...++.+...|..+.+....+..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~------~~~~v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV------PDAKLSLRALDLSSLASVAALGE 85 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEEecCCCHHHHHHHHH
Confidence 367789988987664 233345568999999988776665555554331 12346677888887765554432
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...++.|++|.|--+
T Consensus 86 ~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHhCCCccEEEECCcc
Confidence 223578999987644
No 297
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=0.13 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=28.0
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCC
Q 030274 73 LQASSILELGSGVGVTGILCSRF---CREVLLTDHN 105 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~ 105 (180)
.++.+|||+||-.|.++..+.+. ...|.++|+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 47789999999999999988775 3689999974
No 298
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=93.10 E-value=1 Score=34.48 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++++|=.|++.|+ ++..+++.|++|+.++.++..++.+..++...+ .++.....|..+.+.+..+...
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--------IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHHH
Confidence 67789999988764 233345568999999988876666666655432 2355677787776655444322
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..+++|+++.+--+
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 23578999988754
No 299
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.08 E-value=0.34 Score=36.45 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhhCCCCCC----CCeEEEeCCcCChHHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCc
Q 030274 56 WPGAMLMNDYLSKNPDVLQ----ASSILELGSGVGVTGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAG 130 (180)
Q Consensus 56 w~~~~~l~~~l~~~~~~~~----~~~vLdlG~G~G~~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~ 130 (180)
-+++..+.+||.......+ ..++||+||=+....+. ..+ ..|+.+|.++. .
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~------------ 84 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------H------------ 84 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------C------------
Confidence 4588999999987543222 25999999975543322 222 46999999762 1
Q ss_pred EEEEEeecCCCchhhHHHhhCCCCCcEEEEcccc-ccCCc
Q 030274 131 LAVAKLEWGNSDQINKIIQKYPGGFDLILGADIY-ILYNR 169 (180)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~-y~~~~ 169 (180)
-.+.+-||-...-. ....++||+|.+|=|+ |-+..
T Consensus 85 ~~I~qqDFm~rplp----~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 85 PGILQQDFMERPLP----KNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred CCceeeccccCCCC----CCcccceeEEEEEEEEeeCCCH
Confidence 11445555443210 0135689999999886 33433
No 300
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.07 E-value=1.5 Score=33.37 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++++|=.|++.|+ ++..+++.|++|+.++.+++.++.+.+.+...+ ...++.....|..+.+.+..+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV------AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc------CCceEEEEEccCCCHHHHHHHHHH
Confidence 57789999986653 223344568999999998877666665554421 123456677777776555444321
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|++|.+--+
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 23578999887643
No 301
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.02 E-value=0.57 Score=36.65 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhc
Q 030274 60 MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
..|...+... ....+..|||--+|+|..++++.+.+..+++.|++++-++.+.+.+....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 4444444443 23478899999999999999999999999999999999999998887764
No 302
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.99 E-value=0.063 Score=44.89 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=42.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhc--C-CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 74 QASSILELGSGVGVTGILCSRF--C-REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~--~-~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
++.+|||.=|+||+-+|..|+. + .+|++-|.++.+++..++|++.|+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~ 158 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG 158 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC
Confidence 4568999999999999999885 2 689999999999999999999996
No 303
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.96 E-value=1.7 Score=32.84 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++||=.|++.|+ |.. +++.|++|+.++.++.-++.+...+...+ .++.....|..+.+.+.....
T Consensus 4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--------RRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--------CceEEEecCCCCHHHHHHHHH
Confidence 56789988876653 443 44568999999998876655554444322 235567777776655444332
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+|+.+.-.
T Consensus 75 ~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 75 LALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCccEEEECCcc
Confidence 1 22578999888754
No 304
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.82 E-value=1.2 Score=33.75 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
.++++|=.|++.|+ ++..+++.|++|+.++.++..++.+...+...+ .++.....|..+.+.+..+..
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--------IKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--------CeEEEEecCCCCHHHHHHHHHH
Confidence 56789999976653 222344568999999998766555554444322 234556677777665554432
Q ss_pred --hCCCCCcEEEEcccc
Q 030274 150 --KYPGGFDLILGADIY 164 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~ 164 (180)
...+++|+++.+--.
T Consensus 80 ~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 80 IEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 123578999988754
No 305
>PRK08589 short chain dehydrogenase; Validated
Probab=92.78 E-value=1.3 Score=34.09 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=51.4
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|++++.+ ..++.+.+.+...+ .++.....|..+.+.+..+...
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--------GKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--------CeEEEEEeecCCHHHHHHHHHH
Confidence 56789988887664 233345568999999988 44444444443322 2356677788777655444322
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|++|.+--+
T Consensus 76 ~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHcCCcCEEEECCCC
Confidence 23578999988644
No 306
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.71 E-value=0.29 Score=40.31 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCcCChHHHHHhh-c--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGVTGILCSR-F--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~-~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
-++.||||++|-.|-=+..+|. + -..|++.|.+..-++.++.|+...|.. +..+.+++-..... .
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------ntiv~n~D~~ef~~-----~ 307 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------NTIVSNYDGREFPE-----K 307 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------ceEEEccCcccccc-----c
Confidence 4788999999999754444443 2 258999999999999999999998722 23333333322110 0
Q ss_pred hCCCCCcEEEEccc
Q 030274 150 KYPGGFDLILGADI 163 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~ 163 (180)
..+++||-|+..-|
T Consensus 308 ~~~~~fDRVLLDAP 321 (460)
T KOG1122|consen 308 EFPGSFDRVLLDAP 321 (460)
T ss_pred ccCcccceeeecCC
Confidence 12448999886554
No 307
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.57 E-value=1.7 Score=32.94 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=52.5
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|++++.++..++.+...+...+ .++.....|..+.+....+...
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--------GEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHHH
Confidence 56788888876653 223344568999999998876666655554432 2355666777766554443321
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|+++.+--+
T Consensus 77 ~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 77 AVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 23478998877643
No 308
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.45 E-value=1.8 Score=32.92 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=53.0
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|+ +|.+|..+++ .|.+|+.++.++.-++.+...+...+ .++.....|..+.+.+..+..
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--------IDALWIAADVADEADIERLAE 81 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHHH
Confidence 6778999985 4555665554 48899999998876666655554432 235566777777665543322
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|.|+.+...
T Consensus 82 ~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 82 ETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1 22478999888653
No 309
>PRK09242 tropinone reductase; Provisional
Probab=92.44 E-value=2 Score=32.63 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=53.5
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++++|=.|++.|+ ++..+++.|++|++++.+++.++....++.... ...++.....|..+.+....+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF------PEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------CCCeEEEEECCCCCHHHHHHHHHH
Confidence 67789999986653 222344568999999998877666666654431 11245566777776655444332
Q ss_pred --hCCCCCcEEEEcccc
Q 030274 150 --KYPGGFDLILGADIY 164 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~ 164 (180)
...+++|+|+.+--.
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 123578998877743
No 310
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=92.41 E-value=0.4 Score=37.43 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=34.4
Q ss_pred CCCeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274 74 QASSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~ 113 (180)
...+||--|||.|.++.-+|+.|..|.+.|.|--|+-..+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence 4569999999999999999999999999999877754433
No 311
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.33 E-value=1.4 Score=32.99 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=52.5
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++||=.|++ |.+|..++ +.|.+|++++-++..+..+...+...+ .++.....++.+.+.+.....
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--------GKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence 56789988864 44555544 458899999988765555555444332 235667778877665544332
Q ss_pred h---CCCCCcEEEEcccccc
Q 030274 150 K---YPGGFDLILGADIYIL 166 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~y~ 166 (180)
. ..+++|+|+.+...+.
T Consensus 76 ~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 76 AGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHhCCCCEEEECCCCCC
Confidence 1 1247899988875443
No 312
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.32 E-value=1.2 Score=33.92 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=49.7
Q ss_pred CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274 76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK- 150 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (180)
+++|=.|++.| +|.. +++.|.+|++++.+++.++.+...+. + .++.+...|..+.+.+......
T Consensus 2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--------~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--------GNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--------CceEEEEecCCCHHHHHHHHHHH
Confidence 36777887654 3444 44458999999988876666554433 1 2366778888877655544322
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..+++|+++.+--+
T Consensus 71 ~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 71 AAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHcCCCCCEEEECCCC
Confidence 14578998877643
No 313
>PRK06720 hypothetical protein; Provisional
Probab=92.28 E-value=2.7 Score=30.26 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=52.1
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++.+|=.|++.|+ ++..+++.|++|+.+|.+...++.+.+.+...+ .+......+..+.+....+..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~v~~~v~~ 86 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--------GEALFVSYDMEKQGDWQRVISI 86 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHHH
Confidence 56788888887664 333345568999999988766655444443222 234456677766554443321
Q ss_pred --hCCCCCcEEEEcccccc
Q 030274 150 --KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~y~ 166 (180)
...++.|+++.|--++.
T Consensus 87 ~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 87 TLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 12357899998865443
No 314
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.16 E-value=1.7 Score=32.71 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=49.2
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.| +|..+ ++.|.+|+.++.++..++.+.+.+...+ .++.....|..+.+.......
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--------TEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence 5678998887444 34443 3457899999998766655555444332 234455666665544433322
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..+++|+|+.+.-.
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 75 QIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2 12478999987643
No 315
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.12 E-value=1.4 Score=33.69 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=49.4
Q ss_pred CCCCeEEEeCCcCC-hHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGSGVG-VTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~G-~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++++|=.|+++| -+|.. +++.|++|+.++.++...+.+++-.+..+ .......|..+.+....+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---------APIFLPLDVREPGQLEAV 78 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---------cceEEecCcCCHHHHHHH
Confidence 36789999998752 44444 44568999999987654333332222211 123456777776655544
Q ss_pred Hhh---CCCCCcEEEEcccc
Q 030274 148 IQK---YPGGFDLILGADIY 164 (180)
Q Consensus 148 ~~~---~~~~fD~Ii~~d~~ 164 (180)
... ..++.|+++.|--+
T Consensus 79 ~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 79 FARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHcCCCCEEEEcCcc
Confidence 322 23578999988643
No 316
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.10 E-value=2 Score=32.89 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=49.5
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++.| +|.. +++.|++|++++.+++.++.....+...+ .++.+...|..+.+.+..+.
T Consensus 7 ~~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 7 FAGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--------PEGLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------CceEEEECCCCCHHHHHHHH
Confidence 36778998886444 3443 44468899999988765554444443322 23456677777665554433
Q ss_pred hh---CCCCCcEEEEcc
Q 030274 149 QK---YPGGFDLILGAD 162 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d 162 (180)
.. ..+++|++|.+-
T Consensus 78 ~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 78 AQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 22 234789998765
No 317
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.04 E-value=1.1 Score=33.42 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCC
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHN 105 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~ 105 (180)
.+.+||=+|||. | .++..+++.| .+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 667999999985 5 4555677777 589999977
No 318
>PRK07791 short chain dehydrogenase; Provisional
Probab=92.02 E-value=1.8 Score=33.69 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH---------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE---------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN 140 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~ 140 (180)
.+++++|=.|++.|+ ++..+++.|++|+.++.+. ..++.+.+.+...+ .++.....|..+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~~ 75 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--------GEAVANGDDIAD 75 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--------CceEEEeCCCCC
Confidence 367899999988774 2333555689999998754 43444433333322 235566777777
Q ss_pred CchhhHHHhh---CCCCCcEEEEccccc
Q 030274 141 SDQINKIIQK---YPGGFDLILGADIYI 165 (180)
Q Consensus 141 ~~~~~~~~~~---~~~~fD~Ii~~d~~y 165 (180)
.+....+... ..++.|+++.|--+.
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 76 WDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 6655444322 235789999876543
No 319
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.94 E-value=2.1 Score=34.00 Aligned_cols=71 Identities=8% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChHHHH-HhhcC--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeec
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVTGIL-CSRFC--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEW 138 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~-la~~~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~ 138 (180)
|.+-+.......++...+|.==|.|.-+-. |.+++ .+++++|.++.+++.+++.+...+ .++.+.+-.+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--------~r~~~v~~~F 82 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--------GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--------CcEEEEeCcH
Confidence 444444445555678999988888655554 44553 689999999999999999987764 3455555444
Q ss_pred CC
Q 030274 139 GN 140 (180)
Q Consensus 139 ~~ 140 (180)
.+
T Consensus 83 ~~ 84 (314)
T COG0275 83 AN 84 (314)
T ss_pred HH
Confidence 43
No 320
>PRK06194 hypothetical protein; Provisional
Probab=91.90 E-value=1.8 Score=33.39 Aligned_cols=82 Identities=12% Similarity=0.217 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.| +|..+ ++.|++|+.+|.+.+.++.....+...+ .++.+...|..+.+.+..+..
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--------AEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence 5678887776544 44444 4458899999998766555444433322 235566777776655544322
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...++.|+|+.+--+
T Consensus 76 ~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 76 AALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 123568999887754
No 321
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.89 E-value=2.5 Score=33.10 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=53.0
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+++||=.|++.|+ |.. +++.|.+|++++.+.+.++.+.+.+...+ .++.+...|..+.+.+..+.
T Consensus 38 ~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--------~~~~~~~~Dl~d~~~v~~~~ 108 (293)
T PRK05866 38 LTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--------GDAMAVPCDLSDLDAVDALV 108 (293)
T ss_pred CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence 356789999986654 443 44558999999998877666655554322 23556677777665544443
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|+++.+--.
T Consensus 109 ~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 109 ADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 21 23478999987644
No 322
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.87 E-value=0.096 Score=34.43 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEeCCcCChHHHHHhhc---C--CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchh-hHHHhhCC
Q 030274 79 LELGSGVGVTGILCSRF---C--REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQI-NKIIQKYP 152 (180)
Q Consensus 79 LdlG~G~G~~~l~la~~---~--~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 152 (180)
||+|+..|..++.+++. . .+++++|..+. .+..+++++..+. ..++.+. .++..+. ..+ ..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~------~~~~~~~---~g~s~~~l~~~---~~ 67 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL------SDRVEFI---QGDSPDFLPSL---PD 67 (106)
T ss_dssp --------------------------EEEESS-------------GGG-------BTEEEE---ES-THHHHHHH---HH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC------CCeEEEE---EcCcHHHHHHc---CC
Confidence 69999999888877753 2 37999999885 3334444443321 1123333 3333222 222 14
Q ss_pred CCCcEEEEcc
Q 030274 153 GGFDLILGAD 162 (180)
Q Consensus 153 ~~fD~Ii~~d 162 (180)
+++|+|+..-
T Consensus 68 ~~~dli~iDg 77 (106)
T PF13578_consen 68 GPIDLIFIDG 77 (106)
T ss_dssp --EEEEEEES
T ss_pred CCEEEEEECC
Confidence 6899987654
No 323
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=91.85 E-value=1.5 Score=33.34 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh---
Q 030274 77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK--- 150 (180)
Q Consensus 77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 150 (180)
++|=.|++.|+ ++..+++.|++|+.++.++..++.+...+...+ ++.....|..+.+....+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---------EVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---------CceEEEcCCCCHHHHHHHHHHHHH
Confidence 57778876653 233345568999999998876666655554321 345667777766555444321
Q ss_pred CCCCCcEEEEccc
Q 030274 151 YPGGFDLILGADI 163 (180)
Q Consensus 151 ~~~~fD~Ii~~d~ 163 (180)
..++.|++|.+--
T Consensus 73 ~~g~id~li~naG 85 (259)
T PRK08340 73 LLGGIDALVWNAG 85 (259)
T ss_pred hcCCCCEEEECCC
Confidence 2357899887753
No 324
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.77 E-value=2.1 Score=32.21 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++. .+|..++ +.|.+|++++.+....+.+...+...+ .++.+...+..+.+.+..+..
T Consensus 2 ~~~~ilItGas~-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~ 72 (250)
T TIGR03206 2 KDKTAIVTGGGG-GIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--------GNAQAFACDITDRDSVDTAVA 72 (250)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence 467888888754 4444444 457899999998876666655554432 245567777776655544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|++|.+-..
T Consensus 73 ~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 73 AAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1 12468988877743
No 325
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.76 E-value=2.5 Score=32.33 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=51.6
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++. .+|..++ +.|++|++++.+++.++.+.+.+...+ .++.+...+..+.+.+....
T Consensus 8 ~~~~~vlItGasg-gIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 8 LDDQVAVVTGAGR-GLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--------RRAHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHH
Confidence 3577899999654 4455444 458999999998876665555443322 23556677777766544332
Q ss_pred hh---CCCCCcEEEEccc
Q 030274 149 QK---YPGGFDLILGADI 163 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~ 163 (180)
.. ..+++|+|+.+--
T Consensus 79 ~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 79 GQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 21 1247899987654
No 326
>PRK08643 acetoin reductase; Validated
Probab=91.75 E-value=1.9 Score=32.70 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++++|=.|+..| +|.. +++.|.+|++++.++...+.+...+...+ .++.....|..+.+.+......
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--------GKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHHH
Confidence 356777776554 4443 44458899999998876666665554432 2355667777777655443321
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|+++.+--+
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23578998887643
No 327
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.61 E-value=1.7 Score=33.97 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|++.|+ ++..+++.|++|+.++.+++.++.+.+.+.. ...+.....|..+.+.......
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---------~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---------DDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---------CCcEEEEEecCCCHHHHHHHHH
Confidence 367889988876653 3333445689999999988766554443321 1234445577777665544332
Q ss_pred h---CCCCCcEEEEccccc
Q 030274 150 K---YPGGFDLILGADIYI 165 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~y 165 (180)
. ..++.|++|.+--+.
T Consensus 78 ~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 78 EAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 1 235799999887543
No 328
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.58 E-value=0.43 Score=32.28 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=42.2
Q ss_pred cCChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCC-CCCcEEEEc
Q 030274 84 GVGVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYP-GGFDLILGA 161 (180)
Q Consensus 84 G~G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~Ii~~ 161 (180)
|.|+.++.+|+. |.+|+++|.++.-++.+++. + . ...++..+.+..+.+..... ..+|+|+-+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----G----------a-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----G----------A-DHVIDYSDDDFVEQIRELTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------E-SEEEETTTSSHHHHHHHHTTTSSEEEEEES
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----c----------c-cccccccccccccccccccccccceEEEEe
Confidence 568888888874 79999999999888877653 2 1 13455655543333333334 379988765
Q ss_pred c
Q 030274 162 D 162 (180)
Q Consensus 162 d 162 (180)
-
T Consensus 66 ~ 66 (130)
T PF00107_consen 66 V 66 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 329
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.55 E-value=2.4 Score=33.92 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..+++||=.|++.|+ ++..+++.|++|++++.+++.++.+.+.+...+ .++.....|..+.+.+.....
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--------~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--------GEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------CcEEEEEecCCCHHHHHHHHH
Confidence 356788988876653 222345568999999998877776666665433 245566778777665554432
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...+++|++|.+--+
T Consensus 78 ~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCCCEEEECCCc
Confidence 123578999877653
No 330
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.53 E-value=4 Score=30.40 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=51.1
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++||=.|++.| +|..++ +.|++|++++.+++....+.+.+...+ ++.....++.+.+.......
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~Dl~~~~~~~~~~~ 73 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---------NIHYVVGDVSSTESARNVIE 73 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---------CeEEEECCCCCHHHHHHHHH
Confidence 5678999998654 344443 458899999998876555444333221 35567778887765544332
Q ss_pred h---CCCCCcEEEEccccc
Q 030274 150 K---YPGGFDLILGADIYI 165 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~y 165 (180)
. ..+..|.++.+-..+
T Consensus 74 ~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 74 KAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHhCCCCEEEEcCCCc
Confidence 1 124678888776544
No 331
>PRK07904 short chain dehydrogenase; Provisional
Probab=91.50 E-value=2 Score=32.82 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=50.3
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcC-CeEEEecCCHHH-HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCS----RFC-REVLLTDHNEEV-LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~-~~V~~~D~~~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++||=.|++.|+ |..++ +.| .+|++++.+++. ++.+.+.++..+ ..++.+...|..+.+.....
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-------ASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-------CCceEEEEecCCChHHHHHH
Confidence 45689999996654 44443 344 799999987653 555544454432 12466778888776544333
Q ss_pred Hhh--CCCCCcEEEEcccc
Q 030274 148 IQK--YPGGFDLILGADIY 164 (180)
Q Consensus 148 ~~~--~~~~fD~Ii~~d~~ 164 (180)
... ..+..|+++.+--.
T Consensus 79 ~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHhcCCCCEEEEeeec
Confidence 221 12579988865433
No 332
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.50 E-value=2 Score=32.13 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|+ +|.+|..++ +.|.+|++++.++...+.....+...+ .++.+...|..+.+.+...+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--------VKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------CeEEEEECCCCCHHHHHHHHH
Confidence 4567888886 555666554 358899999998765555444443322 235556666666555444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..+..|+|+.+-.
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 77 QLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHcCCccEEEEcCc
Confidence 1 1246899888764
No 333
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.43 E-value=2.4 Score=32.26 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|++.|+ ++..+++.|++|++++.+.. +.+.+.++..+ .++.....|..+.+....+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--------RKFHFITADLIQQKDIDSIVS 75 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--------CeEEEEEeCCCCHHHHHHHHH
Confidence 367899999987764 33334556899999887532 22233333222 245667788887766555433
Q ss_pred h---CCCCCcEEEEccccc
Q 030274 150 K---YPGGFDLILGADIYI 165 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~y 165 (180)
. ..++.|+++.+.-+.
T Consensus 76 ~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 76 QAVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 2 235799999876543
No 334
>PRK08303 short chain dehydrogenase; Provisional
Probab=91.41 E-value=2.5 Score=33.38 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=49.8
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH----------HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecC
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE----------EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWG 139 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~----------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~ 139 (180)
.+++++|=.|++.|+ ++..+++.|++|++++.+. +.++.+.+.+...+ .++.....|..
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~ 77 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--------GRGIAVQVDHL 77 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--------CceEEEEcCCC
Confidence 467899999987764 2333455689999998763 23333333333322 23445667777
Q ss_pred CCchhhHHHhh---CCCCCcEEEEcc
Q 030274 140 NSDQINKIIQK---YPGGFDLILGAD 162 (180)
Q Consensus 140 ~~~~~~~~~~~---~~~~fD~Ii~~d 162 (180)
+.+....+... ..++.|++|.|-
T Consensus 78 ~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 78 VPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECC
Confidence 76655544332 235789998875
No 335
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.40 E-value=2.7 Score=33.11 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCCCCCeEEEeCCcCChH---HHHHhhcCC-eEEEecCCH
Q 030274 62 MNDYLSKNPDVLQASSILELGSGVGVT---GILCSRFCR-EVLLTDHNE 106 (180)
Q Consensus 62 l~~~l~~~~~~~~~~~vLdlG~G~G~~---~l~la~~~~-~V~~~D~~~ 106 (180)
+...|.+.....+++++|=+|+| |.. +..+++.|. +|+.++.++
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344333223467899999997 532 222445675 599999875
No 336
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.37 E-value=0.22 Score=38.58 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=30.1
Q ss_pred CCCCCeEEEeCCcCChHHHHHh-hcCCeEEEecCCHHHHHHHHHHH
Q 030274 72 VLQASSILELGSGVGVTGILCS-RFCREVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 72 ~~~~~~vLdlG~G~G~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~ 116 (180)
..++.++||+|||.-+.-+..| +...+++++|+.+.-.+.+++=+
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 3467799999999976554444 45679999999997776655443
No 337
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.32 E-value=2.9 Score=31.78 Aligned_cols=83 Identities=12% Similarity=0.273 Sum_probs=50.0
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..+++||=.|++.|+ ++..+++.|++|+.++.+. -.+.+.+.+...+ .++.....|..+.+....+..
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--------RKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHHH
Confidence 367899999997764 2223455689999998873 3333333333221 235566777777665444332
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..+..|+++.+.-.
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1 23478998887643
No 338
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=91.31 E-value=0.69 Score=37.22 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=32.8
Q ss_pred CeEEEeCCcCChHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274 76 SSILELGSGVGVTGILCSRFCREVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~ 117 (180)
...+|+|+|+|.+.-.+...-.+|-+++.+...+..++.++.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~ 220 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA 220 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc
Confidence 689999999997776665565678899988877777766654
No 339
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.31 E-value=2.3 Score=32.16 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=49.5
Q ss_pred CCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274 75 ASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK- 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (180)
++++|=.|++.|+ ++..+++.|.+|++++.++..++.+...+...+ .++.....|..+.+....+...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--------GQVLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHHHH
Confidence 3578888886653 222344568999999988766665554444321 2455667777766544443221
Q ss_pred --CCCCCcEEEEccc
Q 030274 151 --YPGGFDLILGADI 163 (180)
Q Consensus 151 --~~~~fD~Ii~~d~ 163 (180)
..++.|+||.+--
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 2247899987753
No 340
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.29 E-value=3.1 Score=32.46 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=61.4
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++++|=-|+-.|+ ++-.+|+.|.+|+.+--+.+-++.+.+.++... ...+.+...|..+.+....+...
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-------~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-------GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-------CceEEEEECcCCChhHHHHHHHH
Confidence 56788888887774 334566678999999999999999888888763 34577889999988776665432
Q ss_pred ---CCCCCcEEEEccc
Q 030274 151 ---YPGGFDLILGADI 163 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~ 163 (180)
.....|++|-|-=
T Consensus 78 l~~~~~~IdvLVNNAG 93 (265)
T COG0300 78 LKERGGPIDVLVNNAG 93 (265)
T ss_pred HHhcCCcccEEEECCC
Confidence 2247888887763
No 341
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=91.25 E-value=0.6 Score=36.27 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=30.7
Q ss_pred ecchH--HHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhcCCeEEEecCCH
Q 030274 55 VWPGA--MLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRFCREVLLTDHNE 106 (180)
Q Consensus 55 ~w~~~--~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~~~V~~~D~~~ 106 (180)
-||-. ..+.++|...+ ....|-|+|||-+-++. ....+|...|+.+
T Consensus 162 kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a 209 (325)
T KOG3045|consen 162 KWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---SERHKVHSFDLVA 209 (325)
T ss_pred hCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---ccccceeeeeeec
Confidence 45554 45566665553 55689999999987654 3345788888743
No 342
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.19 E-value=2.1 Score=33.77 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
++++++|=.|++.|+ ++..+++.|++|+.+|.+. ..++.+...+...+ .++.....|..+.+....+.
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g--------~~~~~~~~Dv~d~~~~~~~~ 81 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG--------AKAVAVAGDISQRATADELV 81 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC--------CeEEEEeCCCCCHHHHHHHH
Confidence 467899999988764 3334556689999998743 33443333333322 24556677777665554443
Q ss_pred hh--CCCCCcEEEEcccc
Q 030274 149 QK--YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~--~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|++|.+--+
T Consensus 82 ~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 82 ATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 21 13578999887643
No 343
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.11 E-value=2.8 Score=32.19 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++++|=.|++.|+ ++..+++.|.+|+.++.++...+.+.+.+...+ .++.....+..+.+....+..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--------GEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHHH
Confidence 56788888886653 223344568999999998766655554443332 235556667766654443322
Q ss_pred --hCCCCCcEEEEccc
Q 030274 150 --KYPGGFDLILGADI 163 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~ 163 (180)
...+++|+++.+--
T Consensus 81 ~~~~~g~id~li~~ag 96 (278)
T PRK08277 81 ILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHcCCCCEEEECCC
Confidence 12357899988754
No 344
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.04 E-value=3.1 Score=31.51 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++||=.|++.|+ |.. +++.|++|+.++.+...++.+...+...+ .++.....|..+.+.+..+..
T Consensus 10 ~~k~vlVtG~s~gI-G~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------GQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence 57899999977664 333 44458899999987766665544443322 235566778777665444322
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...+++|+++.+--+
T Consensus 81 ~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 81 FALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 223578999887654
No 345
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=90.96 E-value=4.5 Score=31.54 Aligned_cols=87 Identities=16% Similarity=0.267 Sum_probs=60.8
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH--
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI-- 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 147 (180)
+.++.+|-=|+..|+ ++..+++.|++|+.++.+++.++.++.-+...+.. ..++.....|..+.++...+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~l~~ 80 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT-----GGKVLAIVCDVSKEVDVEKLVE 80 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeeEEEECcCCCHHHHHHHHH
Confidence 578899999998774 56678888999999999998888777766655421 23455566666655433332
Q ss_pred --HhhCCCCCcEEEEcccc
Q 030274 148 --IQKYPGGFDLILGADIY 164 (180)
Q Consensus 148 --~~~~~~~fD~Ii~~d~~ 164 (180)
.....++.|+++.|.-.
T Consensus 81 ~~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 81 FAVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHHhCCCCCEEEEcCCc
Confidence 23336789999987743
No 346
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.87 E-value=0.43 Score=35.06 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred eEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274 77 SILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 77 ~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~ 113 (180)
+|-=+|.|- |+ .++.+|+.|.+|+++|.+++.++.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 445566554 53 33456677999999999998776654
No 347
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.82 E-value=1.5 Score=31.63 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=56.9
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHH-hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEE
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILC-SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAK 135 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~l-a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 135 (180)
..+..|++.+.+... .+.+|+=|||=+-...+.- ...+.+++..|++..- +.-+ .+ .+..
T Consensus 10 ~T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~--------~~-~F~f 70 (162)
T PF10237_consen 10 ETAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG--------GD-EFVF 70 (162)
T ss_pred HHHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC--------Cc-ceEE
Confidence 345677777776543 4579999998776665554 2245799999998632 2211 01 2566
Q ss_pred eecCCCchhhHHHhhCCCCCcEEEEcccccc
Q 030274 136 LEWGNSDQINKIIQKYPGGFDLILGADIYIL 166 (180)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d~~y~ 166 (180)
+|......+.. ...++||+||+.||+..
T Consensus 71 yD~~~p~~~~~---~l~~~~d~vv~DPPFl~ 98 (162)
T PF10237_consen 71 YDYNEPEELPE---ELKGKFDVVVIDPPFLS 98 (162)
T ss_pred CCCCChhhhhh---hcCCCceEEEECCCCCC
Confidence 67766544332 23679999999999844
No 348
>PRK09072 short chain dehydrogenase; Provisional
Probab=90.81 E-value=2.2 Score=32.48 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|++++.+++.++.+...+. . ..++.....|..+.+....+...
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~--------~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y--------PGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c--------CCceEEEEccCCCHHHHHHHHHH
Confidence 46678888876654 222345568999999998876655544331 1 12456667777776554443221
Q ss_pred --CCCCCcEEEEcccc
Q 030274 151 --YPGGFDLILGADIY 164 (180)
Q Consensus 151 --~~~~fD~Ii~~d~~ 164 (180)
..++.|+++.+--+
T Consensus 75 ~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 75 AREMGGINVLINNAGV 90 (263)
T ss_pred HHhcCCCCEEEECCCC
Confidence 13578999887543
No 349
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.77 E-value=3.4 Score=31.19 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=47.7
Q ss_pred CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++||=.|++.| +|..+ ++.|.+|++++.++...+.++......+ .++.+...|+.+.+.+... .
T Consensus 3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~---~ 70 (257)
T PRK09291 3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--------LALRVEKLDLTDAIDRAQA---A 70 (257)
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcceEEEeeCCCHHHHHHH---h
Confidence 46888887554 34443 4458899999987765555444433332 2356777888876554433 2
Q ss_pred CCCCcEEEEccc
Q 030274 152 PGGFDLILGADI 163 (180)
Q Consensus 152 ~~~fD~Ii~~d~ 163 (180)
..+.|+|+.+--
T Consensus 71 ~~~id~vi~~ag 82 (257)
T PRK09291 71 EWDVDVLLNNAG 82 (257)
T ss_pred cCCCCEEEECCC
Confidence 347899988743
No 350
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.75 E-value=2.8 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 77 SILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 77 ~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
+|+=+|||. | .++..+++.| .+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899985 5 3555677777 4799999875
No 351
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.69 E-value=4.3 Score=30.87 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=52.8
Q ss_pred CCCCeEEEeCC-cCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGS-GVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~-G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|+ |.|+ +...+++.|.+|+.+|.++..++.+.+.++... ...++.....|..+.+....+.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL------GLGRVEAVVCDVTSEAQVDALI 88 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc------CCceEEEEEccCCCHHHHHHHH
Confidence 35678888886 4443 233345568899999988776666655554421 0123556677777665544433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|+++.+--+
T Consensus 89 ~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 21 23578998888754
No 352
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.68 E-value=2.2 Score=32.64 Aligned_cols=81 Identities=7% Similarity=0.068 Sum_probs=50.1
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|+.++.+++.++.+.+.+ + .++.+...|..+.+.+..+...
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--------ERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CeeEEEEecCCCHHHHHHHHHH
Confidence 56789988876553 33334556899999999875444333221 1 1355677888877655444321
Q ss_pred ---CCCCCcEEEEccccc
Q 030274 151 ---YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~y 165 (180)
..++.|+++.+--++
T Consensus 74 ~~~~~g~id~lv~~ag~~ 91 (261)
T PRK08265 74 VVARFGRVDILVNLACTY 91 (261)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 235789998876543
No 353
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.67 E-value=0.8 Score=34.30 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCeEEEeCCcCChHHHHHhhcC--CeEEEecCCHHHHHHHHHHHHHhc
Q 030274 75 ASSILELGSGVGVTGILCSRFC--REVLLTDHNEEVLKILKKNIEHHT 120 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la~~~--~~V~~~D~~~~~l~~~~~n~~~n~ 120 (180)
.-...|||||-|-+-+.++... .-+.+.++--.+-+..++.+....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 3469999999998888888763 568888887777778877776654
No 354
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.50 E-value=1.9 Score=34.85 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
...+||=+|||. | .++..|++.| .+++.+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 567899999985 6 3455677777 4999999863
No 355
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.31 E-value=3.4 Score=30.77 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++||=.|+ +|.+|..++ +.|.+|++++.++.....+.+.+... .++.....+..+.+.+.....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---------~~~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---------GNVLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---------CcEEEEEccCCCHHHHHHHHH
Confidence 4578998886 555555554 35789999998876555444443321 135566677776655444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..+++|+|+.+.-
T Consensus 75 ~~~~~~~~~d~vi~~ag 91 (237)
T PRK07326 75 AIVAAFGGLDVLIANAG 91 (237)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1 1247899887653
No 356
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.30 E-value=0.37 Score=38.37 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCCCeEEEeCCcCChHHHHHhhc--CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 73 LQASSILELGSGVGVTGILCSRF--CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la~~--~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++...+|.=-|.|.-+..+.+. ..+|+++|.++.+++.+++++... ..++.+.+..+.+.. ..+..
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--------~~r~~~~~~~F~~l~---~~l~~ 87 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--------DDRFIFIHGNFSNLD---EYLKE 87 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--------CTTEEEEES-GGGHH---HHHHH
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--------cceEEEEeccHHHHH---HHHHH
Confidence 36679999988988766665543 479999999999999998876643 234666666665543 22222
Q ss_pred --CCCCCcEEEE
Q 030274 151 --YPGGFDLILG 160 (180)
Q Consensus 151 --~~~~fD~Ii~ 160 (180)
...++|-|+.
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2347777765
No 357
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=90.23 E-value=3.5 Score=31.41 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEec-CCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTD-HNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D-~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++.|+ ++..+++.|++|+.+. .+++.++...+.++... ..++.....|..+.+....+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-------GIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHH
Confidence 367889988987764 3334555689998875 34444444443333211 124566777877766554443
Q ss_pred hh---CCCCCcEEEEcc
Q 030274 149 QK---YPGGFDLILGAD 162 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d 162 (180)
.. ..+++|+++.+-
T Consensus 79 ~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 79 KKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHhcCCccEEEECc
Confidence 22 235789988775
No 358
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.12 E-value=3.6 Score=32.50 Aligned_cols=82 Identities=10% Similarity=0.256 Sum_probs=50.7
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++||=.|+..| +|..+ ++.|++|++++.+....+.+.+.+... ..++.+...|..+.+.+..+..
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--------PDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--------CCceEEEEecCCCHHHHHHHHH
Confidence 4668888887554 44443 445889999998876555444433221 1245667778877665544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|++|.+--+
T Consensus 76 ~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 76 DFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHhCCCccEEEECCcc
Confidence 2 23468999988654
No 359
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.10 E-value=4.1 Score=30.59 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|+ +|.+|..++ +.|.+|++++.++...+.+...+...+ .++.....|..+.+.+..+..
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--------GTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence 5678888885 444555544 458999999988765555544443221 124455666666554433322
Q ss_pred h---CCCCCcEEEEccccc
Q 030274 150 K---YPGGFDLILGADIYI 165 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~y 165 (180)
. ..++.|+||.+--++
T Consensus 76 ~~~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 76 ATVSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHhCCCCEEEECCCCc
Confidence 1 224689999877653
No 360
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.10 E-value=4.4 Score=31.73 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=51.9
Q ss_pred CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+++||=.|+..| +|..+ ++.|.+|++++.+++..+.+.+.+.... ...++.+...|..+.+.+..+.
T Consensus 14 ~~~k~vlItGas~g-IG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 14 QSGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT------PGADVTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CCCceEEEECCCCCHHHHHHHH
Confidence 36778998887544 44444 4458899999988766555544444321 0124556677777766554443
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|++|.+--+
T Consensus 87 ~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHhhCCCCCEEEECCcc
Confidence 22 23578999887654
No 361
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.04 E-value=5.5 Score=29.10 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCCCCeEEEeCC-cC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHHHHH
Q 030274 72 VLQASSILELGS-GV-GV-TGILCSRFCREVLLTDHNEEVLKILKKNI 116 (180)
Q Consensus 72 ~~~~~~vLdlG~-G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~~n~ 116 (180)
..++++++=+|+ |. |. .+..+++.+.+|+.++.+.+-.+.....+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 347789999986 43 53 33345556789999988766555444443
No 362
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.98 E-value=3.7 Score=31.18 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|+..| +|..+ ++.|++|+.++.++...+.+++ +...+ .++.....|..+.+.+..+..
T Consensus 5 ~~~~~lItG~s~g-iG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~--------~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 5 TGKTALITGALQG-IGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG--------HRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC--------CceEEEECCCCCHHHHHHHHH
Confidence 5678998887654 34443 3458999999987654333332 22221 235566677777655544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+--+
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1 23578999987764
No 363
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.97 E-value=0.54 Score=38.57 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=27.7
Q ss_pred eEEEeCCcC-Ch-HHHHHhhcCCeEEEecCCHHHHHHHH
Q 030274 77 SILELGSGV-GV-TGILCSRFCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 77 ~vLdlG~G~-G~-~~l~la~~~~~V~~~D~~~~~l~~~~ 113 (180)
+|--+|+|. |+ .|..+|+.|.+|+++|+++.-++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 455567765 63 45567888999999999998777665
No 364
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.95 E-value=2.5 Score=32.21 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=49.1
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++++|=.|++.|+ ++..+++.|++|++++.++..++.+.... + .++.....|..+.+....+..
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--------DHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CcceEEEccCCCHHHHHHHHHH
Confidence 56789999986654 22234456899999999876655443322 1 124456667666554443322
Q ss_pred --hCCCCCcEEEEcccc
Q 030274 150 --KYPGGFDLILGADIY 164 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~ 164 (180)
...++.|+++.+--+
T Consensus 74 ~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 123578999888654
No 365
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.92 E-value=1.3 Score=35.51 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=33.3
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CCeEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=+|||. |..++.+|+. |.+|+++|.+++-++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 344678999999965 7776666664 7789999998887776653
No 366
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.89 E-value=3.7 Score=30.77 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++++|=.|+..|+ +...+++.|.+|++++.++.-.+.+..++.. + .++.+...+..+.+.+.....
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--------~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--------GRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--------CeEEEEECCCCCHHHHHHHHHH
Confidence 56688888875543 2223445688999999988665555444432 1 235566777777665544332
Q ss_pred --hCCCCCcEEEEcccc
Q 030274 150 --KYPGGFDLILGADIY 164 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~ 164 (180)
...+++|+|+.+--.
T Consensus 75 ~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 75 ALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 123478999887754
No 367
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.88 E-value=0.93 Score=31.79 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.0
Q ss_pred EeCCcCC--hHHHHHh--hc--CCeEEEecCCHHHHHHHHHH--HHHhc
Q 030274 80 ELGSGVG--VTGILCS--RF--CREVLLTDHNEEVLKILKKN--IEHHT 120 (180)
Q Consensus 80 dlG~G~G--~~~l~la--~~--~~~V~~~D~~~~~l~~~~~n--~~~n~ 120 (180)
|+||+.| .....+. +. +.+|+++|.++...+.+++| +..|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 3333332 23 57899999999999999999 77763
No 368
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=89.86 E-value=3.6 Score=30.91 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh--
Q 030274 76 SSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ-- 149 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (180)
+++|=.|++ |.+|..++ +.|.+|++++.++...+.+...+...+ .++.....++.+.+.+.....
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--------GSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHHHHH
Confidence 457777744 55555544 347899999998766655554443322 246667778887664433322
Q ss_pred -hCCCCCcEEEEcccc
Q 030274 150 -KYPGGFDLILGADIY 164 (180)
Q Consensus 150 -~~~~~fD~Ii~~d~~ 164 (180)
...++.|+|+.+.-.
T Consensus 73 ~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 73 AAEFGGLDILVNNAGI 88 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 123468998877643
No 369
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.80 E-value=4.9 Score=30.23 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++||=.|+ +|.+|..+++ .|.+|++++.++...+.+...+...+ .++.....+..+.+.+.....
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--------GKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEcCCCCHHHHHHHHH
Confidence 4567887776 4555665554 47899999998876665555554432 345566777777665444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..+.+|+||.+--
T Consensus 74 ~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 74 YAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1 2246899887664
No 370
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.79 E-value=1.3 Score=35.36 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
.++.+||=.|||. |..++.+++. |. +|+++|.+++-++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3678899899875 7777777764 65 79999999887777764
No 371
>PRK09186 flagellin modification protein A; Provisional
Probab=89.76 E-value=5.5 Score=30.03 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=50.2
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++||=.|++.| +|.. +++.|.+|++++.+++.++.+...+.... ....+.+...|..+.+.+..+..
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~d~~~~~~~~~ 75 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF------KSKKLSLVELDITDQESLEEFLS 75 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc------CCCceeEEEecCCCHHHHHHHHH
Confidence 5678998988654 3444 44458899999988776666555543321 01124455677777665544432
Q ss_pred h---CCCCCcEEEEcc
Q 030274 150 K---YPGGFDLILGAD 162 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d 162 (180)
. ..++.|++|.+-
T Consensus 76 ~~~~~~~~id~vi~~A 91 (256)
T PRK09186 76 KSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHcCCccEEEECC
Confidence 1 224689998775
No 372
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.76 E-value=3.4 Score=31.25 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++.| +|..++ +.|.+|++++.++..++......... ++.....++.+.+.+...+
T Consensus 9 ~~~~~vlItGa~g~-iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 9 LDGLRVLVTGGASG-IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----------KVTATVADVADPAQVERVF 77 (264)
T ss_pred cCCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----------ceEEEEccCCCHHHHHHHH
Confidence 46789999998644 344433 45889999999876555443322111 3456777777765544332
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+|+.+-..
T Consensus 78 ~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 21 12478999876643
No 373
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.70 E-value=4.9 Score=32.28 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred CCCCCCCeEEEeCC-c-CChHHHHHhhc-CCeEEEecCCHHHHHHHH
Q 030274 70 PDVLQASSILELGS-G-VGVTGILCSRF-CREVLLTDHNEEVLKILK 113 (180)
Q Consensus 70 ~~~~~~~~vLdlG~-G-~G~~~l~la~~-~~~V~~~D~~~~~l~~~~ 113 (180)
....++.+||=.|+ | .|..++.+|+. |.+|++++.+++-.+.++
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 33457789999998 4 47777777764 789999998887666655
No 374
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.66 E-value=1.4 Score=34.24 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhhc-CCe-EEEecCCHHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSRF-CRE-VLLTDHNEEVLKILKK 114 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~~-~~~-V~~~D~~~~~l~~~~~ 114 (180)
.++.+||=.|+|. |..++.+|+. |.+ |+++|.+++-++.+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3678999998875 6666666664 665 9999988876666554
No 375
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.65 E-value=1.1 Score=36.55 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHHH
Q 030274 72 VLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKKN 115 (180)
Q Consensus 72 ~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~n 115 (180)
..++.+||.+|||. |...+.+|+. |. +|+++|.+++.++.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 44678999999987 7777777764 65 699999999888877764
No 376
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.64 E-value=2.8 Score=31.95 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.1
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
++.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 567899999985 6 4555777777 6899999764
No 377
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.60 E-value=4.7 Score=30.86 Aligned_cols=79 Identities=20% Similarity=0.179 Sum_probs=48.1
Q ss_pred eEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274 77 SILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--- 149 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (180)
+||=.|+..| +|.. +++.|.+|++++.+..-++.+...+...+ .++.+...|+.+.+.+..+..
T Consensus 2 ~vlVtGasgg-IG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASG-LGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--------GDGFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHHHHH
Confidence 5777776544 4444 44458899999988766665555444332 235566777776654444332
Q ss_pred hCCCCCcEEEEcccc
Q 030274 150 KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~ 164 (180)
...+++|++|.+--.
T Consensus 73 ~~~~~id~lI~~ag~ 87 (270)
T PRK05650 73 EKWGGIDVIVNNAGV 87 (270)
T ss_pred HHcCCCCEEEECCCC
Confidence 123578998887643
No 378
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.48 E-value=5.2 Score=30.00 Aligned_cols=82 Identities=22% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 75 ASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
++++|=.|+. |.+|..++ +.|.+|++++.++..++.+...+.... ...++.+...|..+.+.+.....
T Consensus 2 ~k~vlItGas-~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~ 74 (248)
T PRK08251 2 RQKILITGAS-SGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY------PGIKVAVAALDVNDHDQVFEVFAE 74 (248)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------CCceEEEEEcCCCCHHHHHHHHHH
Confidence 3578878864 44555444 457899999998877666655544321 12346677788887765544332
Q ss_pred --hCCCCCcEEEEccc
Q 030274 150 --KYPGGFDLILGADI 163 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~ 163 (180)
...++.|+|+.+--
T Consensus 75 ~~~~~~~id~vi~~ag 90 (248)
T PRK08251 75 FRDELGGLDRVIVNAG 90 (248)
T ss_pred HHHHcCCCCEEEECCC
Confidence 12357899888763
No 379
>PRK07024 short chain dehydrogenase; Provisional
Probab=89.47 E-value=2.7 Score=31.97 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=48.0
Q ss_pred CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274 76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK- 150 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (180)
++||=.|+..| +|.. +++.|.+|+.++.+++.++.+.+.+... .++.....|..+.+.+......
T Consensus 3 ~~vlItGas~g-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSG-IGQALAREYARQGATLGLVARRTDALQAFAARLPKA---------ARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---------CeeEEEEcCCCCHHHHHHHHHHH
Confidence 46777887554 4444 4456889999999876655443332211 1466777888876655443221
Q ss_pred --CCCCCcEEEEcccc
Q 030274 151 --YPGGFDLILGADIY 164 (180)
Q Consensus 151 --~~~~fD~Ii~~d~~ 164 (180)
..+.+|+++.+--+
T Consensus 73 ~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 73 IAAHGLPDVVIANAGI 88 (257)
T ss_pred HHhCCCCCEEEECCCc
Confidence 23468999987643
No 380
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.43 E-value=1 Score=38.31 Aligned_cols=81 Identities=10% Similarity=0.179 Sum_probs=49.7
Q ss_pred CCCeEEEeCCcCChHHHHHhh---cC---CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCSR---FC---REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~---~~---~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
++..|.|..||+|..-+...+ .+ ..+++-+....+...++.|...++.... .. ...+++. +...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~-----t~---~~~~~dt--l~~~ 286 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA-----NF---NIINADT--LTTK 286 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc-----cc---CcccCCc--CCCc
Confidence 456899999999865544332 12 4689999999999999999877652110 01 1111211 1110
Q ss_pred HhhCCCCCcEEEEcccc
Q 030274 148 IQKYPGGFDLILGADIY 164 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~d~~ 164 (180)
......+||+|+++||+
T Consensus 287 d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 287 EWENENGFEVVVSNPPY 303 (501)
T ss_pred cccccccCCEEeecCCc
Confidence 00013469999999986
No 381
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.39 E-value=0.71 Score=31.20 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCeEEEeCCcCC-hHHHHHhhcCCeEEEecCCHH
Q 030274 75 ASSILELGSGVG-VTGILCSRFCREVLLTDHNEE 107 (180)
Q Consensus 75 ~~~vLdlG~G~G-~~~l~la~~~~~V~~~D~~~~ 107 (180)
..+|.|+|.|-= -.+-.+++.|..|++||+++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc
Confidence 348999988763 466678888999999999875
No 382
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.35 E-value=3.8 Score=30.77 Aligned_cols=82 Identities=13% Similarity=0.191 Sum_probs=49.9
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++||=.|++.| +|.. +++.|++|++++.++ ...+.+.+...+ .++.....|..+.+.+..+.
T Consensus 3 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~ 71 (248)
T TIGR01832 3 LEGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG--------RRFLSLTADLSDIEAIKALV 71 (248)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC--------CceEEEECCCCCHHHHHHHH
Confidence 36788999998665 3444 444588999999764 222333333221 23566778888776655443
Q ss_pred hh---CCCCCcEEEEccccc
Q 030274 149 QK---YPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~y 165 (180)
.. ..++.|+||.+.-+.
T Consensus 72 ~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 72 DSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 21 235789999876443
No 383
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.28 E-value=1.1 Score=35.96 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~ 117 (180)
++|-=||+|+ | -++..++..|.+|+..|.+++.++.++..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5788899986 4 4566677789999999999988877665443
No 384
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.27 E-value=4.5 Score=30.27 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=49.7
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++ |.+|..++ +.|.+|++++.+++.++.....++..+ .++.+...|..+.+.+..+..
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--------GRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHH
Confidence 56788877764 44555544 458899999988766555544443221 245667777777655444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..+++|+|+.+--
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 77 AAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1 1247899887653
No 385
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.25 E-value=3.7 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCC
Q 030274 73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHN 105 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~ 105 (180)
.+..+|+=+|||. | .++..+++.| .+++.+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3667999999985 5 4556677777 579999987
No 386
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.23 E-value=2.3 Score=32.25 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++++||=.|++.|+ |.. +++.|++|++++.++..++...+.+ + ..+...+..+.+.+..+.
T Consensus 5 ~~~~~vlItGasggI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~~~~~~ 70 (255)
T PRK06057 5 LAGRVAVITGGGSGI-GLATARRLAAEGATVVVGDIDPEAGKAAADEV---G----------GLFVPTDVTDEDAVNALF 70 (255)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---C----------CcEEEeeCCCHHHHHHHH
Confidence 467899999996553 443 4456899999998875444433322 1 124566777665544433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+|+.+.-.
T Consensus 71 ~~~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 71 DTAAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 21 23578998887643
No 387
>PRK05599 hypothetical protein; Provisional
Probab=89.15 E-value=3.6 Score=31.14 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=50.9
Q ss_pred eEEEeCCcCChHHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---h
Q 030274 77 SILELGSGVGVTGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ---K 150 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 150 (180)
++|=.|++.|+ |..+++ .|.+|+.++.+++-++.+.+.++..+ ...+.....|..+.+....+.. .
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 73 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-------ATSVHVLSFDAQDLDTHRELVKQTQE 73 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-------CCceEEEEcccCCHHHHHHHHHHHHH
Confidence 56777887764 443332 37899999988877776666665443 1135566777777765554432 2
Q ss_pred CCCCCcEEEEccccc
Q 030274 151 YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y 165 (180)
..++.|+++.+.-++
T Consensus 74 ~~g~id~lv~nag~~ 88 (246)
T PRK05599 74 LAGEISLAVVAFGIL 88 (246)
T ss_pred hcCCCCEEEEecCcC
Confidence 235789988766443
No 388
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.13 E-value=3.5 Score=31.88 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=49.3
Q ss_pred CCCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++++|=.|++. |+ ++..+++.|++|+.++.+....+.+++..+..+ .......|..+.+....+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---------~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---------SDFVLPCDVEDIASVDAV 75 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---------CceEEeCCCCCHHHHHHH
Confidence 3577899999875 42 444556678999999876543333332222211 112456677776655544
Q ss_pred Hhh---CCCCCcEEEEcccc
Q 030274 148 IQK---YPGGFDLILGADIY 164 (180)
Q Consensus 148 ~~~---~~~~fD~Ii~~d~~ 164 (180)
... ..++.|++|.|--+
T Consensus 76 ~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 76 FEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHhCCCCEEEECCcc
Confidence 332 23589999887654
No 389
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.09 E-value=2.6 Score=32.10 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCCCeEEEeCCcC-ChHHH----HHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGSGV-GVTGI----LCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l----~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
..++++|=.|+++ +-+|. .+++.|++|+.++.+....+.+++. .. .++.....|..+.+....+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--------~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--------EEDLLVECDVASDESIERA 73 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--------CceeEEeCCCCCHHHHHHH
Confidence 3678899999863 23343 4555689999998764433322221 11 1345667777776655544
Q ss_pred Hhh---CCCCCcEEEEcccc
Q 030274 148 IQK---YPGGFDLILGADIY 164 (180)
Q Consensus 148 ~~~---~~~~fD~Ii~~d~~ 164 (180)
... ..+++|+++.|--+
T Consensus 74 ~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 74 FATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHHHHhCCCCEEEEcccc
Confidence 322 23579999987654
No 390
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.08 E-value=5.9 Score=29.79 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
.++.+||-.|+|. |...+.+++ .|.+|++++.++...+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4678999999986 555555555 47899999998876666543
No 391
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.06 E-value=5.1 Score=30.39 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=48.6
Q ss_pred CeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274 76 SSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK- 150 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (180)
++||=.|+. |.+|..+ ++.|.+|++++.++...+.+.+.+...+ .++.+...|..+.+.+......
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--------GEALVVPTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CcEEEEEccCCCHHHHHHHHHHH
Confidence 467767754 4445544 3457899999998766555554444332 2455667777776655443321
Q ss_pred --CCCCCcEEEEcccc
Q 030274 151 --YPGGFDLILGADIY 164 (180)
Q Consensus 151 --~~~~fD~Ii~~d~~ 164 (180)
..++.|+|+.+--.
T Consensus 73 ~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 73 VARFGGIDILVNNAGI 88 (263)
T ss_pred HHHcCCCCEEEECCCc
Confidence 12468999888643
No 392
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.03 E-value=1.3 Score=36.85 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=31.8
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~ 113 (180)
..+++|+=+|+|. |......++ .|++|+.+|.++.-.+.++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 5789999999997 766665554 5889999999887655554
No 393
>PRK08703 short chain dehydrogenase; Provisional
Probab=88.99 E-value=7.9 Score=28.91 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=47.9
Q ss_pred CCCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC--chhhH
Q 030274 73 LQASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS--DQINK 146 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 146 (180)
.+++++|=.||+.| +|..+ ++.|.+|++++.++..++.....+...+ ...+.....+..+. +.+..
T Consensus 4 l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~D~~~~~~~~~~~ 75 (239)
T PRK08703 4 LSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-------HPEPFAIRFDLMSAEEKEFEQ 75 (239)
T ss_pred CCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-------CCCcceEEeeecccchHHHHH
Confidence 35678999997544 44444 4458899999998876665555544322 11233455665532 12222
Q ss_pred H----HhhCCCCCcEEEEcccc
Q 030274 147 I----IQKYPGGFDLILGADIY 164 (180)
Q Consensus 147 ~----~~~~~~~fD~Ii~~d~~ 164 (180)
+ .....+.+|+|+.+--.
T Consensus 76 ~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 76 FAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHHHHhCCCCCEEEEeccc
Confidence 1 11222578998877643
No 394
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.93 E-value=0.75 Score=36.83 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCCeEEEeCCcC-ChHHHHHhh--c-CCeEEEecCCHHHHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGILCSR--F-CREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l~la~--~-~~~V~~~D~~~~~l~~~~~ 114 (180)
.++.+||=+|||. |+.++.+++ . +.+|+++|.+++-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4678999999976 777666665 2 3689999999877777654
No 395
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.91 E-value=2.7 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=24.2
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
.+.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 567999999985 5 4555677776 5888887543
No 396
>PRK06138 short chain dehydrogenase; Provisional
Probab=88.80 E-value=5.2 Score=30.01 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.||..| +|.. +++.|++|++++.+.+..+.....+. .+ .++.....|..+.+.+.....
T Consensus 4 ~~k~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--------~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--------GRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--------CeEEEEEcCCCCHHHHHHHHH
Confidence 5678999998654 3443 44458899999988765555444443 11 245667777777665544322
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..+++|+|+.+--.
T Consensus 74 ~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 74 FVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1 22578998887653
No 397
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.76 E-value=6.4 Score=34.20 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCCCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCC-CCCCCCcEEEEEeecCCCchhh
Q 030274 71 DVLQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSE-NPNSDAGLAVAKLEWGNSDQIN 145 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (180)
+...+++||=.|+. |.+|..++ +.|.+|++++.+..-++.+..++..+.... ......++.+...|..+.+.+.
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 34467788888774 55565544 458899999988766555544443321100 0000124566777777655443
Q ss_pred HHHhhCCCCCcEEEEcc
Q 030274 146 KIIQKYPGGFDLILGAD 162 (180)
Q Consensus 146 ~~~~~~~~~fD~Ii~~d 162 (180)
.. .+..|+||.+-
T Consensus 155 ~a----LggiDiVVn~A 167 (576)
T PLN03209 155 PA----LGNASVVICCI 167 (576)
T ss_pred HH----hcCCCEEEEcc
Confidence 32 34689988774
No 398
>PRK06196 oxidoreductase; Provisional
Probab=88.76 E-value=3.3 Score=32.65 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=49.8
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+++||=.|++.| +|..++ +.|.+|++++.+++..+.+...+.. +.....|..+.+.+..+.
T Consensus 24 l~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~------------v~~~~~Dl~d~~~v~~~~ 90 (315)
T PRK06196 24 LSGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREALAGIDG------------VEVVMLDLADLESVRAFA 90 (315)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh------------CeEEEccCCCHHHHHHHH
Confidence 36778998997544 455544 4588999999887655444333221 346677777766554443
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|++|.+--+
T Consensus 91 ~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 91 ERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHhcCCCCCEEEECCCC
Confidence 21 23578999887654
No 399
>PRK05875 short chain dehydrogenase; Provisional
Probab=88.63 E-value=6.4 Score=30.14 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=49.7
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.| +|..+ ++.|++|++++.+++..+.....+...+ ...++.+...+..+.+.......
T Consensus 6 ~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 78 (276)
T PRK05875 6 QDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK------GAGAVRYEPADVTDEDQVARAVD 78 (276)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc------CCCceEEEEcCCCCHHHHHHHHH
Confidence 5678999997544 34444 4458899999988765554444433221 01245566677777655444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..++.|+++.+--
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 79 AATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1 1347899887654
No 400
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.56 E-value=4.7 Score=30.47 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=50.6
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|+..| +|.. +++.|++|++++.++...+.+.+.+...+ .++.....|..+.+.+.....
T Consensus 6 ~~~~vlItGasg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 6 NGKTAVVTGAASG-IGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--------GKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--------ceEEEEECCCCCHHHHHHHHH
Confidence 5678887776543 3443 44568899999998866655555444332 234556667766655443322
Q ss_pred ---hCCCCCcEEEEccccc
Q 030274 150 ---KYPGGFDLILGADIYI 165 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~y 165 (180)
...++.|+||.+.-..
T Consensus 77 ~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 77 KVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHcCCCCEEEECCccC
Confidence 1234689988877543
No 401
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.52 E-value=1.8 Score=33.05 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=48.4
Q ss_pred CCCCeEEEeCCc-CChHHHHHh----hcCCeEEEecCCH--HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhh
Q 030274 73 LQASSILELGSG-VGVTGILCS----RFCREVLLTDHNE--EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQIN 145 (180)
Q Consensus 73 ~~~~~vLdlG~G-~G~~~l~la----~~~~~V~~~D~~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (180)
+.++++|=.|+| ++-+|..++ +.|++|+.++.+. +.++.+.+.+ + .++.....|..+.+...
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--------~~~~~~~~Dv~~~~~i~ 73 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--------EPAPVLELDVTNEEHLA 73 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--------CCCcEEeCCCCCHHHHH
Confidence 357789999984 344555544 4589999998653 3333332221 1 12345667777766555
Q ss_pred HHHh---hCCCCCcEEEEcccc
Q 030274 146 KIIQ---KYPGGFDLILGADIY 164 (180)
Q Consensus 146 ~~~~---~~~~~fD~Ii~~d~~ 164 (180)
.+.. ...+++|++|.|--+
T Consensus 74 ~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 74 SLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHHcCCCcEEEEcccc
Confidence 4432 223689999887644
No 402
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=88.46 E-value=6.6 Score=29.72 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|++.|+ ++..+++.|++|+.+|.++. ...+...+...+ .++.....|..+.+....+..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG--------GEALALTADLETYAGAQAAMA 76 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC--------CeEEEEEEeCCCHHHHHHHHH
Confidence 356789999976653 23334456899999998753 333333333222 235566777777654443332
Q ss_pred h---CCCCCcEEEEcc
Q 030274 150 K---YPGGFDLILGAD 162 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d 162 (180)
. ..+.+|+++.+-
T Consensus 77 ~~~~~~~~id~lv~nA 92 (260)
T PRK12823 77 AAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHcCCCeEEEECC
Confidence 1 235789988765
No 403
>PLN02253 xanthoxin dehydrogenase
Probab=88.46 E-value=5 Score=30.83 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=49.3
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|++.| +|.. +++.|++|++++.++...+.+...+.. ..++.....|..+.+.+..+..
T Consensus 17 ~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 17 LGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---------EPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---------CCceEEEEeecCCHHHHHHHHH
Confidence 5678998886544 3444 445689999999877655444333211 1245677788887765544322
Q ss_pred ---hCCCCCcEEEEccc
Q 030274 150 ---KYPGGFDLILGADI 163 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~ 163 (180)
...++.|++|.+--
T Consensus 87 ~~~~~~g~id~li~~Ag 103 (280)
T PLN02253 87 FTVDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 12357899887764
No 404
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.45 E-value=5.1 Score=31.30 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
+.+.+|+=+|||. | .++..|++.| .+++.+|.+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3677999999985 6 4555778877 7899999763
No 405
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.39 E-value=0.79 Score=35.19 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=28.7
Q ss_pred CCCCeEEEeCCcC-ChHHH-HHhhcC-CeEEEecCCHHHHHH
Q 030274 73 LQASSILELGSGV-GVTGI-LCSRFC-REVLLTDHNEEVLKI 111 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l-~la~~~-~~V~~~D~~~~~l~~ 111 (180)
++..+|+=+|+|- |.++. +|++.| .+++.+|.+.-.+..
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN 69 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTN 69 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccc
Confidence 3667899999974 87777 677876 689999986544433
No 406
>PLN02780 ketoreductase/ oxidoreductase
Probab=88.34 E-value=7.1 Score=31.09 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCC--chhhHHH
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNS--DQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 148 (180)
.++.+|=.|++.|+ ++..+++.|.+|++++.+++.++.+.+.++... ...++.....|..+. +....+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~------~~~~~~~~~~Dl~~~~~~~~~~l~ 125 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY------SKTQIKTVVVDFSGDIDEGVKRIK 125 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC------CCcEEEEEEEECCCCcHHHHHHHH
Confidence 46789999987664 333455668999999999987777766665432 012344556666532 1122222
Q ss_pred hhCC-CCCcEEEEcccc
Q 030274 149 QKYP-GGFDLILGADIY 164 (180)
Q Consensus 149 ~~~~-~~fD~Ii~~d~~ 164 (180)
.... ...|+++.|--+
T Consensus 126 ~~~~~~didilVnnAG~ 142 (320)
T PLN02780 126 ETIEGLDVGVLINNVGV 142 (320)
T ss_pred HHhcCCCccEEEEecCc
Confidence 2222 234577766543
No 407
>PLN02740 Alcohol dehydrogenase-like
Probab=88.33 E-value=1.5 Score=35.68 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=+|+|. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 345778999999875 7777767764 66 69999998877777653
No 408
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.32 E-value=1.6 Score=34.85 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=32.3
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=.|+|. |..++.+|+ .|.+|++++.+++-.+.+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 344678999999864 666666665 47789999998877766655
No 409
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.28 E-value=6.3 Score=30.44 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred CeEEEeCCcCChHHHHHhh---cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh--
Q 030274 76 SSILELGSGVGVTGILCSR---FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK-- 150 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la~---~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 150 (180)
+.+|=-|+| .+|..+++ .|.+|+++|.++..++.+.+.+...+ .++.....|..+.+.+..+...
T Consensus 3 k~~lItGa~--gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--------~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGAG--GIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--------FDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECCC--hHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEeecCCHHHHHHHHHHHH
Confidence 355655653 46666554 37899999998765555544443322 2456677888877665554332
Q ss_pred CCCCCcEEEEccccc
Q 030274 151 YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ~~~~fD~Ii~~d~~y 165 (180)
..+++|+++.+--+.
T Consensus 73 ~~g~id~li~nAG~~ 87 (275)
T PRK06940 73 TLGPVTGLVHTAGVS 87 (275)
T ss_pred hcCCCCEEEECCCcC
Confidence 135789998877543
No 410
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.19 E-value=1.6 Score=35.28 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=.|||. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 344678999999875 7777777764 66 79999998887776643
No 411
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.19 E-value=5.8 Score=30.97 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++.|+ ++..+++.|.+|+.++.++ ..++.....++..+ .++.+...|..+.+.+..+.
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--------VKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--------CeEEEEEccCCCHHHHHHHH
Confidence 467789999986654 3333455689999998764 23333333333222 24556677777766554433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+||.+--.
T Consensus 116 ~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 116 EETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 21 22478998876543
No 412
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=88.18 E-value=5.7 Score=30.05 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++||=.|++.| +|.. +++.|++|+.+|.+...++.....+.... ...++.....|..+.+.+......
T Consensus 2 ~k~ilItG~~~~-IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~i~~~~~~ 74 (259)
T PRK12384 2 NQVAVVIGGGQT-LGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY------GEGMAYGFGADATSEQSVLALSRG 74 (259)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc------CCceeEEEEccCCCHHHHHHHHHH
Confidence 357888886543 4443 44568899999988765554444333211 012355667777766554433221
Q ss_pred ---CCCCCcEEEEccc
Q 030274 151 ---YPGGFDLILGADI 163 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~ 163 (180)
..++.|+|+.+--
T Consensus 75 ~~~~~~~id~vv~~ag 90 (259)
T PRK12384 75 VDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2257899888763
No 413
>PRK07454 short chain dehydrogenase; Provisional
Probab=88.18 E-value=7.3 Score=29.09 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
..+++|=.|+ +|.+|..++ +.|.+|++++.++...+.+...+...+ .++.+...|..+.+.......
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--------VKAAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--------CcEEEEEccCCCHHHHHHHHH
Confidence 3467888885 455555544 457899999998765555544443321 245566777777655443332
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+.-.
T Consensus 76 ~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 76 ELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1 12468999987754
No 414
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.14 E-value=1.2 Score=34.55 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=30.4
Q ss_pred HHhhCCCCCCCCeEEEeCCcCChHHHHHhhcC-------CeEEEecCCH
Q 030274 65 YLSKNPDVLQASSILELGSGVGVTGILCSRFC-------REVLLTDHNE 106 (180)
Q Consensus 65 ~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~~-------~~V~~~D~~~ 106 (180)
.|.+.--+.+...++|+|||-|.++..+++.- ..++.+|-..
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34433333456689999999999999888742 5889999744
No 415
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.98 E-value=3.6 Score=33.44 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.4
Q ss_pred CCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-GV-TGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~~ 106 (180)
++.+||=+|||. |. ++..+++.| .+++.+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 567999999985 54 445677766 6888888754
No 416
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=87.92 E-value=3 Score=29.19 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=51.8
Q ss_pred eEEEeCCcCCh---HHHHHhhcC-CeEEEecCC--HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 77 SILELGSGVGV---TGILCSRFC-REVLLTDHN--EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 77 ~vLdlG~G~G~---~~l~la~~~-~~V~~~D~~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
++|=.|++.|+ ++..+++.| ..|+.+..+ .+..+.+...+...+ .++.+...|..+.+....+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--------AKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--------SEEEEEESETTSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--------cccccccccccccccccccccc
Confidence 56777877653 233344454 588888887 455555555555432 457778888887765554433
Q ss_pred --hCCCCCcEEEEcccccc
Q 030274 150 --KYPGGFDLILGADIYIL 166 (180)
Q Consensus 150 --~~~~~fD~Ii~~d~~y~ 166 (180)
...++.|++|.+.-++.
T Consensus 74 ~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccc
Confidence 23468999998876554
No 417
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=87.90 E-value=3.4 Score=31.46 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=47.2
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.| +|.. +++.|++|++++.+.+.++.++.. .+ .++.....+..+.+.......
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--------~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 4 KGEVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HG--------DAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---cC--------CceEEEEeccCCHHHHHHHHH
Confidence 5678888888655 3443 445689999999887655444321 11 235556667766554433322
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..++.|+++.+.-
T Consensus 72 ~~~~~~g~id~li~~Ag 88 (262)
T TIGR03325 72 RCVAAFGKIDCLIPNAG 88 (262)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1 2257899888864
No 418
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.83 E-value=2.4 Score=32.14 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=51.7
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH--
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI-- 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 147 (180)
+.+.||=.||..|-+|-++++ .|..|++|--+.+-...+... . .+....+|....++....
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~---~----------gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ---F----------GLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh---h----------CCeeEEeccCChHHHHHHHH
Confidence 456899999999988888776 488999997665433333221 1 244778888887754433
Q ss_pred -Hhh-CCCCCcEEEEcc
Q 030274 148 -IQK-YPGGFDLILGAD 162 (180)
Q Consensus 148 -~~~-~~~~fD~Ii~~d 162 (180)
... ..++.|+.+-|-
T Consensus 73 evr~~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNA 89 (289)
T ss_pred HHhhCCCCceEEEEcCC
Confidence 223 567889988654
No 419
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.63 E-value=1.6 Score=34.32 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=34.2
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
.+|-=||+|+ | -++..+++.|.+|+..|.+++.++.++..+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3788899997 4 46667778899999999999998887766544
No 420
>PRK07074 short chain dehydrogenase; Provisional
Probab=87.61 E-value=5.6 Score=30.05 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++++|=.|++.|+ |.. +++.|++|++++.++.-.+.....+ .+ .++.....+..+.+.+......
T Consensus 2 ~k~ilItGat~~i-G~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~--------~~~~~~~~D~~~~~~~~~~~~~ 70 (257)
T PRK07074 2 KRTALVTGAAGGI-GQALARRFLAAGDRVLALDIDAAALAAFADAL--GD--------ARFVPVACDLTDAASLAAALAN 70 (257)
T ss_pred CCEEEEECCcchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC--------CceEEEEecCCCHHHHHHHHHH
Confidence 3467888876653 444 4456889999998876554443333 11 2355677888777655433221
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..+++|+|+.+.-.
T Consensus 71 ~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 71 AAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12468999988753
No 421
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.60 E-value=5.4 Score=30.53 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=49.4
Q ss_pred CCCCeEEEeCC-cCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGS-GVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~-G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++++|=-|+ |++-+|..++ +.|++|+.++.+....+.+++-....+ .......|..+.+....+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~ 74 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---------SELVFRCDVASDDEINQV 74 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---------CceEEECCCCCHHHHHHH
Confidence 35678999997 3444455544 568999988765433333333222211 123456777777666555
Q ss_pred Hhh---CCCCCcEEEEccccc
Q 030274 148 IQK---YPGGFDLILGADIYI 165 (180)
Q Consensus 148 ~~~---~~~~fD~Ii~~d~~y 165 (180)
... ..++.|++|.|--+.
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 75 FADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHHHhCCCcEEEECCccC
Confidence 432 235799999887543
No 422
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.53 E-value=1.5 Score=39.11 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=35.3
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
++|.=||+|+ | -++..+|..|.+|+..|.+++.++.++..+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4799999998 5 56667788899999999999998877766543
No 423
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=87.49 E-value=5.6 Score=30.12 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=48.1
Q ss_pred CCCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|++.| +|..+ ++.|++|+++|.+...++.+...+ . .++.....|..+.+....+..
T Consensus 5 ~~~~vlItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--~---------~~~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 5 QGKVALLTGAASG-IGEAVAERYLAEGARVVIADIKPARARLAALEI--G---------PAAIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--C---------CceEEEEccCCCHHHHHHHHH
Confidence 4678898886554 34444 446899999999876555443322 1 124556677776665544332
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+.-.
T Consensus 73 ~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 73 AAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1 23478998877543
No 424
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=87.42 E-value=10 Score=28.50 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCC--CchhhH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGN--SDQINK 146 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 146 (180)
.++++||=.|+ +|.+|..++ +.|.+|++++.++..++.+...+...+ ..++.+...+... .+.+..
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-------GPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-------CCCceEEEecccCCCHHHHHH
Confidence 46788999996 444555444 457899999998876665555544332 1123344444432 122222
Q ss_pred H---HhhCCCCCcEEEEccc
Q 030274 147 I---IQKYPGGFDLILGADI 163 (180)
Q Consensus 147 ~---~~~~~~~fD~Ii~~d~ 163 (180)
+ .....++.|.|+.+--
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 1 1122357899887753
No 425
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.38 E-value=2.2 Score=33.83 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=30.9
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhh-cCCe-EEEecCCHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSR-FCRE-VLLTDHNEEVLKILK 113 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~-~~~~-V~~~D~~~~~l~~~~ 113 (180)
...++.+||=+|+|. |..++.+++ .|.+ |++++.+++-.+.++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 344678899898865 666666665 4677 999999887666654
No 426
>PRK06198 short chain dehydrogenase; Provisional
Probab=87.36 E-value=6.1 Score=29.89 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=48.5
Q ss_pred CCCCeEEEeCCcCChHHHHH----hhcCCe-EEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGSGVGVTGILC----SRFCRE-VLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~l----a~~~~~-V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++++|=.|++.| +|..+ ++.|++ |++++.+++........+... ..++.....+..+.+.+..+
T Consensus 4 ~~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~D~~~~~~~~~~ 74 (260)
T PRK06198 4 LDGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL--------GAKAVFVQADLSDVEDCRRV 74 (260)
T ss_pred CCCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--------CCeEEEEEccCCCHHHHHHH
Confidence 35678998887554 44443 345777 999998765544333333222 12355567777776554443
Q ss_pred Hhh---CCCCCcEEEEccc
Q 030274 148 IQK---YPGGFDLILGADI 163 (180)
Q Consensus 148 ~~~---~~~~fD~Ii~~d~ 163 (180)
... ..++.|+|+.+.-
T Consensus 75 ~~~~~~~~g~id~li~~ag 93 (260)
T PRK06198 75 VAAADEAFGRLDALVNAAG 93 (260)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 321 1246899888764
No 427
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.26 E-value=5.7 Score=29.63 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEe-cCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLT-DHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~-D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++++|=.|+ +|.+|..++ +.|.+|+.+ +.++...+.+...+...+ .++.+...|..+.+.+....
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--------GDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHH
Confidence 4567888886 455555444 457899998 888766655555544322 24667777887776554433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+|+.+.-.
T Consensus 75 ~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 75 EQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 21 12468999987754
No 428
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.24 E-value=1.1 Score=31.00 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCCCCeEEEeCCcC-Ch-HHHHHhhcCC-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 72 VLQASSILELGSGV-GV-TGILCSRFCR-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 72 ~~~~~~vLdlG~G~-G~-~~l~la~~~~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..++++||=+|+|- |. +...++..|. +|+.+.-+.+-.+.+.+.+.... +....|.+...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~------------~~~~~~~~~~~----- 71 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVN------------IEAIPLEDLEE----- 71 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCS------------EEEEEGGGHCH-----
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccc------------cceeeHHHHHH-----
Confidence 35788999999975 43 3334555564 69999988765555555442221 44455554321
Q ss_pred hhCCCCCcEEEEccccc
Q 030274 149 QKYPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~~~~~~fD~Ii~~d~~y 165 (180)
...++|+|+.+-+.-
T Consensus 72 --~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 72 --ALQEADIVINATPSG 86 (135)
T ss_dssp --HHHTESEEEE-SSTT
T ss_pred --HHhhCCeEEEecCCC
Confidence 124799999987753
No 429
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.14 E-value=4.3 Score=32.78 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=25.4
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
.+++||=+|||. | .++..|++.| .+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 667999999985 5 3555677777 5899999864
No 430
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=87.06 E-value=7.2 Score=29.54 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=47.2
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++++|=.|+..|+ ++..+++.|++|+++|.+.. +...+.+...+ .++.....+..+.+.+..+..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--------RRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence 367789999986553 22334456899999987542 22222232222 234556677776555544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+++.+.-+
T Consensus 78 ~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1 23578999877643
No 431
>PRK07825 short chain dehydrogenase; Provisional
Probab=86.98 E-value=4.1 Score=31.20 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=48.8
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|++.|+ |.. +++.|.+|+.++.+++.++.+...+. ++.+...|+.+.+.+.....
T Consensus 4 ~~~~ilVtGasggi-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------~~~~~~~D~~~~~~~~~~~~ 70 (273)
T PRK07825 4 RGKVVAITGGARGI-GLATARALAALGARVAIGDLDEALAKETAAELG------------LVVGGPLDVTDPASFAAFLD 70 (273)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------cceEEEccCCCHHHHHHHHH
Confidence 46789988887654 443 44458899999988766554433322 13466778887665444332
Q ss_pred ---hCCCCCcEEEEccc
Q 030274 150 ---KYPGGFDLILGADI 163 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~ 163 (180)
...+..|++|.+--
T Consensus 71 ~~~~~~~~id~li~~ag 87 (273)
T PRK07825 71 AVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 12357899998764
No 432
>PRK07060 short chain dehydrogenase; Provisional
Probab=86.97 E-value=5.5 Score=29.75 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++.| +|.. +++.|.+|++++.+++.++...+.. + ......+..+.+.+.....
T Consensus 8 ~~~~~lItGa~g~-iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~v~~~~~ 73 (245)
T PRK07060 8 SGKSVLVTGASSG-IGRACAVALAQRGARVVAAARNAAALDRLAGET---G----------CEPLRLDVGDDAAIRAALA 73 (245)
T ss_pred CCCEEEEeCCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----------CeEEEecCCCHHHHHHHHH
Confidence 5678887776543 3433 3445889999998876544332221 1 2245667766544444433
Q ss_pred hCCCCCcEEEEcccc
Q 030274 150 KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~ 164 (180)
. .+++|+||.+.-.
T Consensus 74 ~-~~~~d~vi~~ag~ 87 (245)
T PRK07060 74 A-AGAFDGLVNCAGI 87 (245)
T ss_pred H-hCCCCEEEECCCC
Confidence 2 3478999988754
No 433
>PRK08628 short chain dehydrogenase; Provisional
Probab=86.92 E-value=8.3 Score=29.13 Aligned_cols=82 Identities=9% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.+++++|=.|++.| +|.. +++.|++|+.++.++...+.. ..+...+ .++.+...|..+.+.+....
T Consensus 5 l~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~--------~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 5 LKDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRALQ--------PRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred cCCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhcC--------CceEEEEccCCCHHHHHHHH
Confidence 36778888887655 4444 445688999999877655332 3333222 24567778887766544433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|+|+.+.-.
T Consensus 75 ~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 75 EQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHhcCCCCEEEECCcc
Confidence 21 22478998888753
No 434
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.67 E-value=5.6 Score=30.74 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCCc-CChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH
Q 030274 72 VLQASSILELGSG-VGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK 146 (180)
Q Consensus 72 ~~~~~~vLdlG~G-~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
...++++|=.|++ ++-+|.. +++.|++|+.+..+....+.+++..+..+ .......|..+.+....
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---------~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---------AFVAGHCDVTDEASIDA 77 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---------CceEEecCCCCHHHHHH
Confidence 3467789999986 2334444 44568999988765333333333222211 12345677777665555
Q ss_pred HHhh---CCCCCcEEEEcccc
Q 030274 147 IIQK---YPGGFDLILGADIY 164 (180)
Q Consensus 147 ~~~~---~~~~fD~Ii~~d~~ 164 (180)
+... ..++.|++|.|--+
T Consensus 78 ~~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 78 VFETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHHhcCCCcEEEECCcc
Confidence 4332 23578999988644
No 435
>PRK12743 oxidoreductase; Provisional
Probab=86.61 E-value=10 Score=28.70 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCeEEEeCCcCChHHHHHh----hcCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 75 ASSILELGSGVGVTGILCS----RFCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++||=.|++.| +|..++ +.|++|+.+.. +....+.+...+...+ .++.....|..+.+.+..+..
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 72 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--------VRAEIRQLDLSDLPEGAQALD 72 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHH
Confidence 357888887655 455444 45889988753 4444555444444433 245667778777655444322
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...++.|+|+.+.-.
T Consensus 73 ~~~~~~~~id~li~~ag~ 90 (256)
T PRK12743 73 KLIQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 123578999988644
No 436
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=86.59 E-value=7.4 Score=29.95 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=58.8
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH--
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII-- 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (180)
+++.+|==|+.+|+ ++..+++.|++|+++.-..+.++.+...+.. + .+....+|..+.+.+..+.
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~---------~~~~~~~DVtD~~~~~~~i~~ 74 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-G---------AALALALDVTDRAAVEAAIEA 74 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-C---------ceEEEeeccCCHHHHHHHHHH
Confidence 45678888888875 4445566799999999998888877766553 1 3557888888886644433
Q ss_pred -hhCCCCCcEEEEcccccc
Q 030274 149 -QKYPGGFDLILGADIYIL 166 (180)
Q Consensus 149 -~~~~~~fD~Ii~~d~~y~ 166 (180)
+...++.|+++.|-=++.
T Consensus 75 ~~~~~g~iDiLvNNAGl~~ 93 (246)
T COG4221 75 LPEEFGRIDILVNNAGLAL 93 (246)
T ss_pred HHHhhCcccEEEecCCCCc
Confidence 234568999998875554
No 437
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.57 E-value=7.3 Score=30.17 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCCeEEEeCCc--CCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSG--VGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G--~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++++|=.|++ .|+ ++..+++.|++|+.++.+....+.+++..+..+ .. .....|..+.+....+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--------~~-~~~~~Dv~d~~~v~~~~ 74 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--------SD-YVYELDVSKPEHFKSLA 74 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--------Cc-eEEEecCCCHHHHHHHH
Confidence 56789999985 332 333455568999999987543333332222221 11 24567777776555443
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|++|.|--+
T Consensus 75 ~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 75 ESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHHcCCCCEEEECCcc
Confidence 32 23679999888754
No 438
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=86.49 E-value=1 Score=39.03 Aligned_cols=50 Identities=16% Similarity=0.013 Sum_probs=35.6
Q ss_pred chHHHHHHHHhhCCCCCCCCeEEEeCCcCChHHHHHhhc---CCeEEEecCCH
Q 030274 57 PGAMLMNDYLSKNPDVLQASSILELGSGVGVTGILCSRF---CREVLLTDHNE 106 (180)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~vLdlG~G~G~~~l~la~~---~~~V~~~D~~~ 106 (180)
.++..|.+.=.+..-+-++..||||||-.|.+..++++. +.-|+++|+-|
T Consensus 27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 345555544333322336778999999999999888874 57899999755
No 439
>PRK06484 short chain dehydrogenase; Validated
Probab=86.48 E-value=3.6 Score=34.83 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=50.5
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+++++|=.|++.|+ ++..+++.|++|++++.+.+.++.+.+.+ + .++.....|..+.+.+..+...
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL---G--------PDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceeEEEeccCCHHHHHHHHHH
Confidence 56789988987773 23334556899999998876555443332 1 1244567777776655544332
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|++|.+--+
T Consensus 73 ~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 73 LHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 23579999988643
No 440
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.44 E-value=6.4 Score=32.35 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=47.7
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHH--HHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKI--LKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~--~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++||=.| |+|.+|..+++ .|.+|++++-++.-... ........ ..++.+...|+.+.+.+...
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--------~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--------LPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh--------cCCceEEEeeCCCHHHHHHH
Confidence 567899888 57888876664 47899999876532210 01111111 11356778888887666555
Q ss_pred HhhCCCCCcEEEEc
Q 030274 148 IQKYPGGFDLILGA 161 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~ 161 (180)
.......+|+|+.+
T Consensus 130 ~~~~~~~~D~Vi~~ 143 (390)
T PLN02657 130 LFSEGDPVDVVVSC 143 (390)
T ss_pred HHHhCCCCcEEEEC
Confidence 43222268999854
No 441
>PRK08324 short chain dehydrogenase; Validated
Probab=86.42 E-value=6.8 Score=34.70 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+++||=.|++.| +|.. +++.|++|+++|.++..++.+...+... .++.....+..+.+.+....
T Consensus 420 l~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---------~~v~~v~~Dvtd~~~v~~~~ 489 (681)
T PRK08324 420 LAGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---------DRALGVACDVTDEAAVQAAF 489 (681)
T ss_pred CCCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---------CcEEEEEecCCCHHHHHHHH
Confidence 46788998887544 3443 4445889999999887665554433221 13556677777765544433
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+|+.+--+
T Consensus 490 ~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 490 EEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 21 23478999887653
No 442
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=86.37 E-value=5.2 Score=32.47 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=50.2
Q ss_pred CCCCCCeEEEeCCcC--ChHHHHHhhc-CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 71 DVLQASSILELGSGV--GVTGILCSRF-CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~--G~~~l~la~~-~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
...++++||=+|+++ |...+.+|+. +...+.+-.+.+.++.+++. +. ...++|.+.+-.+..
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GA-----------d~vvdy~~~~~~e~~ 218 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GA-----------DEVVDYKDENVVELI 218 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CC-----------cEeecCCCHHHHHHH
Confidence 455778999999876 5666777775 44667777778877777754 20 355677775544444
Q ss_pred HhhCCCCCcEEEEcc
Q 030274 148 IQKYPGGFDLILGAD 162 (180)
Q Consensus 148 ~~~~~~~fD~Ii~~d 162 (180)
.+.....||+|+-+=
T Consensus 219 kk~~~~~~DvVlD~v 233 (347)
T KOG1198|consen 219 KKYTGKGVDVVLDCV 233 (347)
T ss_pred HhhcCCCccEEEECC
Confidence 333356799988543
No 443
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.26 E-value=11 Score=28.55 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHH-HHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHH
Q 030274 73 LQASSILELGSGVGVTGILCS----RFCREVLLTDHNEE-VLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKI 147 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
.+++++|=.|++.| +|..++ +.|++|+.++.+.. .++.+.+.+...+ .++.....|..+.+.+...
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--------RRAIQIAADVTSKADLRAA 76 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHH
Confidence 36778998886655 444444 45889999997642 3344444443322 2355667777776554443
Q ss_pred Hh---hCCCCCcEEEEccccc
Q 030274 148 IQ---KYPGGFDLILGADIYI 165 (180)
Q Consensus 148 ~~---~~~~~fD~Ii~~d~~y 165 (180)
.. ...++.|++|.+.-+.
T Consensus 77 ~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 32 2235789999887543
No 444
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.23 E-value=2.4 Score=34.28 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=.|+|. |..++.+|+. |. +|+++|.+++-++.+++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 344677888899875 6666666664 66 69999999887776654
No 445
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.10 E-value=4.8 Score=31.02 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=46.2
Q ss_pred CCeEEEeCCcCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 75 ASSILELGSGVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
+++||=.|++.| +|..+ ++.|.+|++++.+++.++.++. .+ +.....|..+.+.+..+..
T Consensus 4 ~k~vlItGasgg-iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----------~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSG-IGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----------LEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----------ceEEEccCCCHHHHHHHHHH
Confidence 457888887544 44444 4458999999998766554332 12 4456777776655444332
Q ss_pred ---hCCCCCcEEEEccc
Q 030274 150 ---KYPGGFDLILGADI 163 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~ 163 (180)
...+..|+++.+--
T Consensus 69 ~~~~~~g~id~li~~Ag 85 (277)
T PRK05993 69 VLELSGGRLDALFNNGA 85 (277)
T ss_pred HHHHcCCCccEEEECCC
Confidence 22357899998754
No 446
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.08 E-value=2.9 Score=31.64 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=40.9
Q ss_pred eEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHH-HHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 77 SILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKK-NIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 77 ~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
+++=+|||. | .++-.|++.|..|+++|.+++.++.... ... ..+...+-.+.+.+ .+..-.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~-------------~~~v~gd~t~~~~L---~~agi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD-------------THVVIGDATDEDVL---EEAGID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc-------------eEEEEecCCCHHHH---HhcCCC
Confidence 566778876 4 3444566678999999999986655322 211 22444444433332 222456
Q ss_pred CCcEEEEc
Q 030274 154 GFDLILGA 161 (180)
Q Consensus 154 ~fD~Ii~~ 161 (180)
.+|++++.
T Consensus 66 ~aD~vva~ 73 (225)
T COG0569 66 DADAVVAA 73 (225)
T ss_pred cCCEEEEe
Confidence 88887765
No 447
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=85.88 E-value=2.9 Score=31.49 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=42.0
Q ss_pred HHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh----CCCCCcEEEEcccc
Q 030274 89 GILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK----YPGGFDLILGADIY 164 (180)
Q Consensus 89 ~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~d~~ 164 (180)
+..+++.|++|+.++.+.+.++..-+.+.... ...+...|..+.+.+..+... ..++.|++|.+--.
T Consensus 13 a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~ 83 (241)
T PF13561_consen 13 ARALAEEGANVILTDRNEEKLADALEELAKEY---------GAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGI 83 (241)
T ss_dssp HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT---------TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEES
T ss_pred HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc---------CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccc
Confidence 33455569999999999987554444444432 122577777766655554332 23789998876543
No 448
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.78 E-value=5.9 Score=30.25 Aligned_cols=84 Identities=7% Similarity=0.039 Sum_probs=47.6
Q ss_pred CCCeEEEeCCcC-ChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGV-GVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++++|=.|++. +-+|.. +++.|++|+.++.+....+.+++-.+... ..++.....|..+.+....+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-------GQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-------CCceEEEecCCCCHHHHHHHH
Confidence 578899999862 334444 44568999998754221122222111111 123556677887776655544
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+++.|--+
T Consensus 79 ~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHHHhCCCccEEEECccc
Confidence 32 23689998876543
No 449
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.73 E-value=2 Score=28.40 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=36.9
Q ss_pred CcCChHHHHHhhc----CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCCCCcEE
Q 030274 83 SGVGVTGILCSRF----CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPGGFDLI 158 (180)
Q Consensus 83 ~G~G~~~l~la~~----~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 158 (180)
||.|..|..+++. +.+|+.+|.+++.++.++.. + +.+...+..+.+.+ .+....+.+.|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----------~~~i~gd~~~~~~l---~~a~i~~a~~v 66 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----------VEVIYGDATDPEVL---ERAGIEKADAV 66 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----------SEEEES-TTSHHHH---HHTTGGCESEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----------cccccccchhhhHH---hhcCccccCEE
Confidence 5666677766652 45899999999887776643 1 23455555444332 22244577776
Q ss_pred EEcc
Q 030274 159 LGAD 162 (180)
Q Consensus 159 i~~d 162 (180)
++.-
T Consensus 67 v~~~ 70 (116)
T PF02254_consen 67 VILT 70 (116)
T ss_dssp EEES
T ss_pred EEcc
Confidence 6653
No 450
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.67 E-value=7.3 Score=30.53 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEeCC--cCChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 70 PDVLQASSILELGS--GVGVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 70 ~~~~~~~~vLdlG~--G~G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
....++.+||=.|+ |.|..++.+|+ .|.+|++++.+++-.+.+++
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 33446788988884 33767776776 47899999988876666654
No 451
>PRK07201 short chain dehydrogenase; Provisional
Probab=85.65 E-value=9.2 Score=33.40 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.++++|=.|++.| +|.. +++.|++|++++.+++.++.+...+...+ .++.+...|..+.+.......
T Consensus 370 ~~k~vlItGas~g-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~ 440 (657)
T PRK07201 370 VGKVVLITGASSG-IGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--------GTAHAYTCDLTDSAAVDHTVK 440 (657)
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------CcEEEEEecCCCHHHHHHHHH
Confidence 4678888887655 3444 44568999999998876666555544332 246667778887765554432
Q ss_pred ---hCCCCCcEEEEcccc
Q 030274 150 ---KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ---~~~~~fD~Ii~~d~~ 164 (180)
...+..|+++.+--+
T Consensus 441 ~~~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 441 DILAEHGHVDYLVNNAGR 458 (657)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 123478999987653
No 452
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.65 E-value=2.9 Score=34.20 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=28.5
Q ss_pred CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHH
Q 030274 74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILK 113 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~ 113 (180)
++.+|+=+|+|. |..++..++ .|.+|+.+|.+++.++.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 456799999885 665555444 5789999999876655443
No 453
>PRK08328 hypothetical protein; Provisional
Probab=85.56 E-value=6.8 Score=29.78 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.5
Q ss_pred CCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-GV-TGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~~ 106 (180)
.+.+|+=+|||. |. ++..+++.| .+++.+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 567899999985 63 455677776 6899999654
No 454
>PRK05717 oxidoreductase; Validated
Probab=85.53 E-value=3.6 Score=31.20 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++||=.|++.| +|.. +++.|++|+.+|.++.-.+...+.+ + .++.....|..+.+.+..+.
T Consensus 8 ~~~k~vlItG~sg~-IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---~--------~~~~~~~~Dl~~~~~~~~~~ 75 (255)
T PRK05717 8 HNGRVALVTGAARG-IGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---G--------ENAWFIAMDVADEAQVAAGV 75 (255)
T ss_pred cCCCEEEEeCCcch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---C--------CceEEEEccCCCHHHHHHHH
Confidence 46778998887544 3444 4445889999998765333322221 1 13456677777665543322
Q ss_pred hh---CCCCCcEEEEccccc
Q 030274 149 QK---YPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~y 165 (180)
.. ..+++|+++.+--+.
T Consensus 76 ~~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHHHHhCCCCEEEECCCcc
Confidence 21 234789999887543
No 455
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.50 E-value=13 Score=27.95 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=42.4
Q ss_pred ceecchH-HHHHHHHhhC---CCCCCCCeEEEeCCcCChHHHHHhhc-C-CeEEEecCCHHHHHHHH
Q 030274 53 QLVWPGA-MLMNDYLSKN---PDVLQASSILELGSGVGVTGILCSRF-C-REVLLTDHNEEVLKILK 113 (180)
Q Consensus 53 ~~~w~~~-~~l~~~l~~~---~~~~~~~~vLdlG~G~G~~~l~la~~-~-~~V~~~D~~~~~l~~~~ 113 (180)
.+.|+.- -.|+..+.+- ....++.+||=||+-+|...-.++.- + ..++++++++.....+-
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 5678654 3555555432 33557889999999999877776664 3 58999999996554443
No 456
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.43 E-value=2.6 Score=34.10 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCCCCeEEEeCCcC-ChHHHHHhhc-C-CeEEEecCCHHHHHHHHH
Q 030274 72 VLQASSILELGSGV-GVTGILCSRF-C-REVLLTDHNEEVLKILKK 114 (180)
Q Consensus 72 ~~~~~~vLdlG~G~-G~~~l~la~~-~-~~V~~~D~~~~~l~~~~~ 114 (180)
..++.+|.=+|||. |+.++.-|+. | .+++++|+++.-+++|++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 34778999999976 9988887775 3 599999999998888875
No 457
>PRK12828 short chain dehydrogenase; Provisional
Probab=85.39 E-value=11 Score=27.80 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++++|=.|++ |.+|..++ +.|++|++++.++.-.......+... ...+...++.+.+.+.....
T Consensus 6 ~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 6 QGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD----------ALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----------CceEEEeecCCHHHHHHHHH
Confidence 56788888865 44454443 45889999998765433322222222 13456677777655444332
Q ss_pred h---CCCCCcEEEEccc
Q 030274 150 K---YPGGFDLILGADI 163 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~ 163 (180)
. ..++.|+|+.+..
T Consensus 75 ~~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 75 EVNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHHhCCcCEEEECCc
Confidence 1 2347899887654
No 458
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=85.39 E-value=8 Score=30.56 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=50.6
Q ss_pred CCeEEEeCCcCCh---HHHHHhhcC-CeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 75 ASSILELGSGVGV---TGILCSRFC-REVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~---~~l~la~~~-~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++++|=.|++.|+ ++..+++.| .+|+.++.++...+.+.+.+... ..++.....|..+.+....+...
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~--------~~~~~~~~~Dl~~~~~v~~~~~~ 74 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP--------KDSYTIMHLDLGSLDSVRQFVQQ 74 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC--------CCeEEEEEcCCCCHHHHHHHHHH
Confidence 4578888876654 222344568 89999988776555444433211 12455667788777655444322
Q ss_pred ---CCCCCcEEEEccccc
Q 030274 151 ---YPGGFDLILGADIYI 165 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~y 165 (180)
..++.|++|.+--++
T Consensus 75 ~~~~~~~iD~lI~nAG~~ 92 (314)
T TIGR01289 75 FRESGRPLDALVCNAAVY 92 (314)
T ss_pred HHHhCCCCCEEEECCCcc
Confidence 235789999887543
No 459
>PRK08278 short chain dehydrogenase; Provisional
Probab=85.37 E-value=9.9 Score=29.23 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHH-------HHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCc
Q 030274 74 QASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEV-------LKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSD 142 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
+++++|=.|++.|+ |.. +++.|.+|++++.+... ++.+.+.+...+ .++.....|..+.+
T Consensus 5 ~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~D~~~~~ 75 (273)
T PRK08278 5 SGKTLFITGASRGI-GLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--------GQALPLVGDVRDED 75 (273)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--------CceEEEEecCCCHH
Confidence 56789988886653 443 44568899999876431 222222232222 24556777887776
Q ss_pred hhhHHHhh---CCCCCcEEEEcccc
Q 030274 143 QINKIIQK---YPGGFDLILGADIY 164 (180)
Q Consensus 143 ~~~~~~~~---~~~~fD~Ii~~d~~ 164 (180)
.+..+... ..+++|+|+.+--+
T Consensus 76 ~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 76 QVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 55544321 22479999887643
No 460
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.35 E-value=2.4 Score=33.21 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~ 117 (180)
.+|.=||+|+ | .++..+++.|.+|++.|.+++.++.++.+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3677888886 4 4555666778999999999998888876653
No 461
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.21 E-value=8.1 Score=29.10 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.+++||=.|++.|+ ++..+++.|++|++++.++...+.+.. ..+ .++.....|..+.+.+..+...
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~---~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 82 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ---LLG--------GNAKGLVCDVSDSQSVEAAVAA 82 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hhC--------CceEEEEecCCCHHHHHHHHHH
Confidence 57789999886654 223345568999999988754332221 111 2344667777766555443321
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..+++|+++.+--+
T Consensus 83 ~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 83 VISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 23478998887754
No 462
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.07 E-value=6.9 Score=32.05 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCC
Q 030274 73 LQASSILELGSGV-GV-TGILCSRFC-REVLLTDHN 105 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~ 105 (180)
..+.+||=+|||. |. ++..+++.| .+++.+|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3667999999985 53 444666766 689999976
No 463
>PRK06484 short chain dehydrogenase; Validated
Probab=85.06 E-value=4.9 Score=34.05 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 74 QASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 74 ~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.++++|=.|++.|+ ++..+++.|++|+.++.++..++.+.+.+ + .+......|..+.+....+...
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------CceeEEEccCCCHHHHHHHHHH
Confidence 56788888887663 23334556899999999876665554322 1 1234566777776655444322
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..++.|++|.|--+
T Consensus 337 ~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 337 IQARWGRLDVLVNNAGI 353 (520)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 23579999987644
No 464
>PRK06914 short chain dehydrogenase; Provisional
Probab=85.05 E-value=9.3 Score=29.30 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=49.1
Q ss_pred CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh-
Q 030274 75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ- 149 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (180)
++++|=.|++.|+ |.. +++.|++|++++-++..++.....+...+ ...++.+...|..+.+.+..+..
T Consensus 3 ~k~~lItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~ 75 (280)
T PRK06914 3 KKIAIVTGASSGF-GLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN------LQQNIKVQQLDVTDQNSIHNFQLV 75 (280)
T ss_pred CCEEEEECCCchH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCceeEEecCCCCHHHHHHHHHH
Confidence 4578888865543 443 34458999999988766655544433322 01246667778877665443111
Q ss_pred -hCCCCCcEEEEcccc
Q 030274 150 -KYPGGFDLILGADIY 164 (180)
Q Consensus 150 -~~~~~fD~Ii~~d~~ 164 (180)
...++.|+|+.+.-.
T Consensus 76 ~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 76 LKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHhcCCeeEEEECCcc
Confidence 122468998887643
No 465
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.02 E-value=2.9 Score=33.58 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
...++.+||=.|||. |..++.+|+. |. +|+++|.++.-.+.+++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 344678999999865 6666667764 66 59999998887777653
No 466
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.99 E-value=13 Score=27.59 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=48.3
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++||=.|+ +|.+|..+++ .|.+|++++-++...+.....+...+ .++.....|..+.+.+.....
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--------GEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--------CceEEEEccCCCHHHHHHHHH
Confidence 4568888886 5666665543 57899999998765554444443322 235555667766654443322
Q ss_pred h---CCCCCcEEEEcc
Q 030274 150 K---YPGGFDLILGAD 162 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d 162 (180)
. ..++.|.|+-+-
T Consensus 75 ~~~~~~~~id~vi~~a 90 (246)
T PRK05653 75 AAVEAFGALDILVNNA 90 (246)
T ss_pred HHHHHhCCCCEEEECC
Confidence 1 124679888765
No 467
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.89 E-value=2.5 Score=33.14 Aligned_cols=42 Identities=36% Similarity=0.387 Sum_probs=32.2
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIE 117 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~ 117 (180)
++|.=+|+|. | .++..+++.|.+|++.|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4678889986 5 4566677778999999999998887665443
No 468
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.84 E-value=12 Score=28.49 Aligned_cols=82 Identities=22% Similarity=0.235 Sum_probs=48.0
Q ss_pred CCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.++.+|=-|++. |+ ++..+++.|++|+.++.++...+.+++..+..+ .......|..+.+....+.
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---------~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---------CNFVSELDVTNPKSISNLF 77 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---------CceEEEccCCCHHHHHHHH
Confidence 567889899865 42 334456678999998876433333333222211 1123467777776655544
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..++.|+++.+--+
T Consensus 78 ~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred HHHHHHcCCccEEEEcccc
Confidence 32 23579998887643
No 469
>PRK05855 short chain dehydrogenase; Validated
Probab=84.73 E-value=17 Score=31.00 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+.++|=.|+..| +|.. +++.|.+|+.++.+...++.+...+...+ .++.....|..+.+....+.
T Consensus 313 ~~~~~~lv~G~s~g-iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~ 383 (582)
T PRK05855 313 FSGKLVVVTGAGSG-IGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--------AVAHAYRVDVSDADAMEAFA 383 (582)
T ss_pred CCCCEEEEECCcCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEEcCCCCHHHHHHHH
Confidence 35567888887554 3443 44568899999998876666555554432 23556777777766554443
Q ss_pred h---hCCCCCcEEEEccccc
Q 030274 149 Q---KYPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~---~~~~~fD~Ii~~d~~y 165 (180)
. ...++.|+++.+--+.
T Consensus 384 ~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 384 EWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred HHHHHhcCCCcEEEECCccC
Confidence 2 2235789999887553
No 470
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.72 E-value=8.9 Score=28.37 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCH
Q 030274 74 QASSILELGSGV-G-VTGILCSRFC-REVLLTDHNE 106 (180)
Q Consensus 74 ~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~ 106 (180)
.+.+||=+|||. | -++..+++.| .+++.+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 567899999986 4 3444566666 6899998653
No 471
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.42 E-value=5.8 Score=32.44 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCcC-Ch-HHHHHhhcC-CeEEEecCC
Q 030274 73 LQASSILELGSGV-GV-TGILCSRFC-REVLLTDHN 105 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~-~~l~la~~~-~~V~~~D~~ 105 (180)
..+.+||=+|||. |. ++..|++.| .+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3667999999984 53 555677777 589999987
No 472
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.32 E-value=11 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCCCeEEEeCCcC-C-hHHHHHhhcC-CeEEEecCCHHHHHHHHHH
Q 030274 73 LQASSILELGSGV-G-VTGILCSRFC-REVLLTDHNEEVLKILKKN 115 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G-~~~l~la~~~-~~V~~~D~~~~~l~~~~~n 115 (180)
.++++|+=+|+|. | .....+++.+ .+|+.+|.+++..+.+.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 4678999999863 2 2222333444 6899999987655554443
No 473
>PRK05884 short chain dehydrogenase; Provisional
Probab=84.25 E-value=6 Score=29.51 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=42.0
Q ss_pred eEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhCCC
Q 030274 77 SILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKYPG 153 (180)
Q Consensus 77 ~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
++|=.|++.|+ +...+++.|.+|+.++.+++-++.+.+.+ + +.....|..+.+.+..+......
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~---~----------~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL---D----------VDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c----------CcEEecCCCCHHHHHHHHHHHhh
Confidence 46667775553 22234456889999998876554433221 1 22455666665555544433334
Q ss_pred CCcEEEEcc
Q 030274 154 GFDLILGAD 162 (180)
Q Consensus 154 ~fD~Ii~~d 162 (180)
++|+++.+.
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 689988764
No 474
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=84.19 E-value=16 Score=27.67 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=48.9
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCC-HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHN-EEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
++++++|=.|++.|+ ++..+++.|++|+.+..+ +...+.+...+...+ .++.....|..+.+.+..+.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAG--------GEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--------CeEEEEEecCCCHHHHHHHH
Confidence 467889988887764 222344568888877653 344444444444332 23556677777766544433
Q ss_pred h---hCCCCCcEEEEccc
Q 030274 149 Q---KYPGGFDLILGADI 163 (180)
Q Consensus 149 ~---~~~~~fD~Ii~~d~ 163 (180)
. ...++.|+++.+--
T Consensus 77 ~~~~~~~g~id~lv~~ag 94 (261)
T PRK08936 77 QTAVKEFGTLDVMINNAG 94 (261)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 2 12357899887764
No 475
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=84.18 E-value=17 Score=30.10 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=51.9
Q ss_pred HHHHHhhCCCC-CCCCeEEEeCCcCCh--H---HHHHhhcCCeEEEecCCHHHHH------------HHHHHHHHhcCCC
Q 030274 62 MNDYLSKNPDV-LQASSILELGSGVGV--T---GILCSRFCREVLLTDHNEEVLK------------ILKKNIEHHTSSE 123 (180)
Q Consensus 62 l~~~l~~~~~~-~~~~~vLdlG~G~G~--~---~l~la~~~~~V~~~D~~~~~l~------------~~~~n~~~n~~~~ 123 (180)
..+|+.+.... ..++++|=.|+.+|+ . +..+ +.|++|+++++.....+ ..++.++..+
T Consensus 27 qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G--- 102 (398)
T PRK13656 27 QIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG--- 102 (398)
T ss_pred HHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC---
Confidence 34566655443 456899999998764 2 3344 56899999986432211 1222223222
Q ss_pred CCCCCCcEEEEEeecCCCchhhHHHh---hCCCCCcEEEEccc
Q 030274 124 NPNSDAGLAVAKLEWGNSDQINKIIQ---KYPGGFDLILGADI 163 (180)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~Ii~~d~ 163 (180)
..+...+.|..+.+....+.. ...++.|++|-|--
T Consensus 103 -----~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA 140 (398)
T PRK13656 103 -----LYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLA 140 (398)
T ss_pred -----CceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 123345667666654443322 23367999886653
No 476
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.15 E-value=10 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.2
Q ss_pred CeEEEeCC-c-CChHHHHHhhc-CC-eEEEecCCHHHHHHHHH
Q 030274 76 SSILELGS-G-VGVTGILCSRF-CR-EVLLTDHNEEVLKILKK 114 (180)
Q Consensus 76 ~~vLdlG~-G-~G~~~l~la~~-~~-~V~~~D~~~~~l~~~~~ 114 (180)
.+||=.|+ | .|..++.+|+. |. +|++++.+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 78988886 3 47777777764 76 89999998876666554
No 477
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.10 E-value=3 Score=37.15 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.5
Q ss_pred CeEEEeCCcC-C-hHHHHHh-hcCCeEEEecCCHHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCS-RFCREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la-~~~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
++|.=||+|+ | -++..++ ..|.+|+..|.+++.++.++.++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5799999998 5 4555666 6799999999999988888766654
No 478
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.09 E-value=12 Score=28.83 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCeEEEeCCcC--Ch---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGV--GV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~--G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++|=.|++. |+ ++..+++.|++|+.++.+....+.+++ +.... ..+.....|..+.+.+..+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--------~~~~~~~~Dl~~~~~v~~~~ 75 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--------GSDIVLPCDVAEDASIDAMF 75 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--------CCceEeecCCCCHHHHHHHH
Confidence 567899999875 32 344555668999999876432222222 21111 12335667777776655544
Q ss_pred hh---CCCCCcEEEEccccc
Q 030274 149 QK---YPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~y 165 (180)
.. ..+++|++|.|--++
T Consensus 76 ~~~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 76 AELGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHHHhhcCCCCEEEECCccC
Confidence 32 235789999887543
No 479
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.07 E-value=12 Score=27.98 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCeEEEeCCcCChHHHHHh----hcCCeEEEecCCH-HHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGVGVTGILCS----RFCREVLLTDHNE-EVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++|=.|+..| +|..++ +.|.+|++++.+. ...+.+...++..+ .++.....|..+.+......
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--------GRASAVGADLTDEESVAALM 75 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--------CceEEEEcCCCCHHHHHHHH
Confidence 5678998987544 444443 4578999887653 23333333333221 23556677777766554433
Q ss_pred hh---CCCCCcEEEEcc
Q 030274 149 QK---YPGGFDLILGAD 162 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d 162 (180)
.. ..+..|+++.+-
T Consensus 76 ~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 76 DTAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHHhCCCCcEEEECC
Confidence 21 224689887665
No 480
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.00 E-value=3 Score=33.28 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=34.4
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHHh
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEHH 119 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n 119 (180)
++|-=+|+|+ | -++..+|..|..|+..|.++++++.++..+..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~ 49 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKN 49 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence 4788899998 4 466666776699999999999888877666554
No 481
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.95 E-value=2.3 Score=36.29 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 74 QASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
++.+|+=+|+|. |+.++.+++ +|+.|+++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 567999999997 888776665 58899999999987666654
No 482
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.95 E-value=2.6 Score=37.60 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=35.3
Q ss_pred CeEEEeCCcC-C-hHHHHHhhcCCeEEEecCCHHHHHHHHHHHHH
Q 030274 76 SSILELGSGV-G-VTGILCSRFCREVLLTDHNEEVLKILKKNIEH 118 (180)
Q Consensus 76 ~~vLdlG~G~-G-~~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~ 118 (180)
++|-=||+|+ | -++..+|..|.+|+..|.+++.++.+++++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAK 358 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4789999998 4 56667788899999999999998887766654
No 483
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=83.80 E-value=5.6 Score=32.47 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=45.8
Q ss_pred EEEeCCcCChHHHHHhh----cC-C-eEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 78 ILELGSGVGVTGILCSR----FC-R-EVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 78 vLdlG~G~G~~~l~la~----~~-~-~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
|+=||| |.+|-.+++ .. . +|+..|.+.+.++...+.+ . ..++....++..+.+.+..+.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~--------~~~~~~~~~d~~~~~~l~~~~--- 65 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L--------GDRVEAVQVDVNDPESLAELL--- 65 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T--------TTTEEEEE--TTTHHHHHHHH---
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c--------ccceeEEEEecCCHHHHHHHH---
Confidence 566888 555554443 33 3 8999999988666555433 1 235778888888776655543
Q ss_pred CCCCcEEEEccccccCCchhhHHHHH
Q 030274 152 PGGFDLILGADIYILYNRSLLMTSFF 177 (180)
Q Consensus 152 ~~~fD~Ii~~d~~y~~~~~~l~~~~~ 177 (180)
...|+||.+-+-| ....+++.++
T Consensus 66 -~~~dvVin~~gp~--~~~~v~~~~i 88 (386)
T PF03435_consen 66 -RGCDVVINCAGPF--FGEPVARACI 88 (386)
T ss_dssp -TTSSEEEE-SSGG--GHHHHHHHHH
T ss_pred -hcCCEEEECCccc--hhHHHHHHHH
Confidence 4569999665444 2334444444
No 484
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.68 E-value=4.2 Score=31.94 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCCCCeEEEeCCcC-ChHHHHHhh-cCCeEEEecCCHHHHHHHHH
Q 030274 72 VLQASSILELGSGV-GVTGILCSR-FCREVLLTDHNEEVLKILKK 114 (180)
Q Consensus 72 ~~~~~~vLdlG~G~-G~~~l~la~-~~~~V~~~D~~~~~l~~~~~ 114 (180)
...+.+||-.|+|. |...+.+|+ .|.+|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 44667888888763 666666666 47889999999887776644
No 485
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.65 E-value=12 Score=28.44 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCCCeEEEeCCcC-ChHHH----HHhhcCCeEEEecCC-----------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 73 LQASSILELGSGV-GVTGI----LCSRFCREVLLTDHN-----------EEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l----~la~~~~~V~~~D~~-----------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
.+++++|=.|++. +.+|. .+++.|++|+.++.+ ........+.++..+ .++.....
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~ 75 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--------VKVSSMEL 75 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--------CeEEEEEc
Confidence 4678999999862 23344 444568899887521 112223334444332 24556677
Q ss_pred ecCCCchhhHHHhh---CCCCCcEEEEccccc
Q 030274 137 EWGNSDQINKIIQK---YPGGFDLILGADIYI 165 (180)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~y 165 (180)
|..+.+.+..+... ..+..|++|.+.-+.
T Consensus 76 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 76 DLTQNDAPKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 77777655544322 234689999887543
No 486
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.59 E-value=8.7 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=30.3
Q ss_pred CCCCeEEEeCCcC-ChHHH-HHhhcCCeEEEecCCHH-HHHHHHHHHHHhc
Q 030274 73 LQASSILELGSGV-GVTGI-LCSRFCREVLLTDHNEE-VLKILKKNIEHHT 120 (180)
Q Consensus 73 ~~~~~vLdlG~G~-G~~~l-~la~~~~~V~~~D~~~~-~l~~~~~n~~~n~ 120 (180)
..+++|+=+|+|. |+... .+++.|.+|+++|.++. ......+.++..+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g 64 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG 64 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC
Confidence 3567899999875 64322 44556899999996543 3333344455554
No 487
>PRK07832 short chain dehydrogenase; Provisional
Probab=83.47 E-value=14 Score=28.23 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=45.2
Q ss_pred eEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh---
Q 030274 77 SILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ--- 149 (180)
Q Consensus 77 ~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 149 (180)
++|=.|++.| +|.. +++.|++|++++.+++.++.+...+...+ .........|..+.+....+..
T Consensus 2 ~vlItGas~g-iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (272)
T PRK07832 2 RCFVTGAASG-IGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-------GTVPEHRALDISDYDAVAAFAADIH 73 (272)
T ss_pred EEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CCcceEEEeeCCCHHHHHHHHHHHH
Confidence 4666676544 3443 44568899999988776655544444322 0112234567776554443322
Q ss_pred hCCCCCcEEEEcccc
Q 030274 150 KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~ 164 (180)
...++.|+++.+--.
T Consensus 74 ~~~~~id~lv~~ag~ 88 (272)
T PRK07832 74 AAHGSMDVVMNIAGI 88 (272)
T ss_pred HhcCCCCEEEECCCC
Confidence 123568999887643
No 488
>PRK06180 short chain dehydrogenase; Provisional
Probab=83.43 E-value=6.4 Score=30.29 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh
Q 030274 75 ASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK 150 (180)
Q Consensus 75 ~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
++++|=.|++.|+ |.. +++.|.+|++++.++..++.+... ++ .++.....+..+.+.+......
T Consensus 4 ~~~vlVtGasggi-G~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~--------~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGF-GRALAQAALAAGHRVVGTVRSEAARADFEAL---HP--------DRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChH-HHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC--------CCeeEEEccCCCHHHHHHHHHH
Confidence 4678888886653 443 344588999999987655433221 11 2355667777776655443321
Q ss_pred ---CCCCCcEEEEcccc
Q 030274 151 ---YPGGFDLILGADIY 164 (180)
Q Consensus 151 ---~~~~fD~Ii~~d~~ 164 (180)
..+.+|+|+.+--.
T Consensus 72 ~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 72 AEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 12468998887653
No 489
>PRK07775 short chain dehydrogenase; Provisional
Probab=83.42 E-value=15 Score=28.22 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+.+++|=.|++ |.+|..+++ .|.+|++++.+....+....++...+ .++.....|..+.+.+..+..
T Consensus 9 ~~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 9 DRRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG--------GEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHHH
Confidence 44678888864 555665554 57899999887665544444443322 235555667776665544432
Q ss_pred h---CCCCCcEEEEcccc
Q 030274 150 K---YPGGFDLILGADIY 164 (180)
Q Consensus 150 ~---~~~~fD~Ii~~d~~ 164 (180)
. ..++.|+|+.+--.
T Consensus 80 ~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 80 QAEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 1 12468988877643
No 490
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=83.39 E-value=5.6 Score=31.06 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=50.6
Q ss_pred CeEEEeCCcCCh--HHHHHhhc---CCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhH--HH
Q 030274 76 SSILELGSGVGV--TGILCSRF---CREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINK--II 148 (180)
Q Consensus 76 ~~vLdlG~G~G~--~~l~la~~---~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 148 (180)
...||||||.=. ..-.+|+. .++|+-+|.++-++..++.-+..+. .....+...+..+.+.+.. ..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------RGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------TSEEEEEE--TT-HHHHHCSHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------CccEEEEeCCCCCHHHHhcCHHH
Confidence 479999999632 22334442 5899999999999998888777663 1236677888877654322 00
Q ss_pred h-h-CCCCCcEEEEcccccc-C---CchhhHHHHHHh
Q 030274 149 Q-K-YPGGFDLILGADIYIL-Y---NRSLLMTSFFQA 179 (180)
Q Consensus 149 ~-~-~~~~fD~Ii~~d~~y~-~---~~~~l~~~~~~a 179 (180)
. . ...+.=.++...++++ . +...++..+.++
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~ 179 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDA 179 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCC
T ss_pred HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHh
Confidence 0 0 1123335777777776 2 333455555443
No 491
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=83.38 E-value=16 Score=32.51 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 73 LQASSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+.+++||=.|++.| +|.. +++.|++|+++|.+...++.+...+.... ...++.....|..+.+.+....
T Consensus 412 l~gkvvLVTGasgg-IG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~------~~~~~~~v~~Dvtd~~~v~~a~ 484 (676)
T TIGR02632 412 LARRVAFVTGGAGG-IGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF------GAGRAVALKMDVTDEQAVKAAF 484 (676)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc------CCCcEEEEECCCCCHHHHHHHH
Confidence 46788998888655 3444 34458999999998876665554443221 0113445666777665544433
Q ss_pred h---hCCCCCcEEEEccccc
Q 030274 149 Q---KYPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~---~~~~~fD~Ii~~d~~y 165 (180)
. ...+++|++|.+--+.
T Consensus 485 ~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred HHHHHhcCCCcEEEECCCCC
Confidence 2 1235789988877543
No 492
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.37 E-value=9.4 Score=29.19 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred CCCeEEEeCC-cCChHHHHH----hhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGS-GVGVTGILC----SRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~-G~G~~~l~l----a~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++|=.|+ |++-+|..+ ++.|++|+.++......+.+++-.+..+ .......|..+.+....+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---------SDLVFPCDVASDEQIDALF 75 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC---------CcceeeccCCCHHHHHHHH
Confidence 5678999997 344445544 4568999988653222222222111111 1124566777766655543
Q ss_pred hh---CCCCCcEEEEcccc
Q 030274 149 QK---YPGGFDLILGADIY 164 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~ 164 (180)
.. ..+++|+++.|--+
T Consensus 76 ~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHHHhCCCcEEEEcccc
Confidence 32 23689999988744
No 493
>PRK06101 short chain dehydrogenase; Provisional
Probab=83.36 E-value=8.4 Score=28.90 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=44.3
Q ss_pred CeEEEeCCcCChHHHH----HhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhhC
Q 030274 76 SSILELGSGVGVTGIL----CSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQKY 151 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~----la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
+++|=.|+. |.+|.. +++.|.+|++++.+++.++.+... . .++.....|..+.+.+..+....
T Consensus 2 ~~vlItGas-~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~--------~~~~~~~~D~~~~~~~~~~~~~~ 68 (240)
T PRK06101 2 TAVLITGAT-SGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S--------ANIFTLAFDVTDHPGTKAALSQL 68 (240)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c--------CCCeEEEeeCCCHHHHHHHHHhc
Confidence 356666664 444544 444589999999987655433221 1 13556778888777666665443
Q ss_pred CCCCcEEEEcc
Q 030274 152 PGGFDLILGAD 162 (180)
Q Consensus 152 ~~~fD~Ii~~d 162 (180)
....|.++.+-
T Consensus 69 ~~~~d~~i~~a 79 (240)
T PRK06101 69 PFIPELWIFNA 79 (240)
T ss_pred ccCCCEEEEcC
Confidence 33457666544
No 494
>PRK06482 short chain dehydrogenase; Provisional
Probab=83.19 E-value=9.8 Score=29.12 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=46.9
Q ss_pred CeEEEeCCcCChHHHHHh----hcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHhh-
Q 030274 76 SSILELGSGVGVTGILCS----RFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQK- 150 (180)
Q Consensus 76 ~~vLdlG~G~G~~~l~la----~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (180)
+++|=.|+ +|.+|..++ +.|.+|++++.+++.++.++.... .++.+...|..+.+.+......
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------DRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------CceEEEEccCCCHHHHHHHHHHH
Confidence 46777776 455555544 457899999988766554443211 1355677888877655443321
Q ss_pred --CCCCCcEEEEccc
Q 030274 151 --YPGGFDLILGADI 163 (180)
Q Consensus 151 --~~~~fD~Ii~~d~ 163 (180)
..++.|+|+.+.-
T Consensus 71 ~~~~~~id~vi~~ag 85 (276)
T PRK06482 71 FAALGRIDVVVSNAG 85 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 2356899888764
No 495
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.18 E-value=12 Score=28.37 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=47.5
Q ss_pred CCCeEEEeCCcC-ChHHHHH----hhcCCeEEEecCC------------HHHHHHHHHHHHHhcCCCCCCCCCcEEEEEe
Q 030274 74 QASSILELGSGV-GVTGILC----SRFCREVLLTDHN------------EEVLKILKKNIEHHTSSENPNSDAGLAVAKL 136 (180)
Q Consensus 74 ~~~~vLdlG~G~-G~~~l~l----a~~~~~V~~~D~~------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~ 136 (180)
.+++||=.|++. |.+|..+ ++.|++|++++.+ +.... +...+...+ .++.....
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~ 74 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--------VRCEHMEI 74 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--------CeEEEEEC
Confidence 567899999863 3445444 4458899999865 22222 222222221 24666777
Q ss_pred ecCCCchhhHHHhh---CCCCCcEEEEcccc
Q 030274 137 EWGNSDQINKIIQK---YPGGFDLILGADIY 164 (180)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~fD~Ii~~d~~ 164 (180)
|..+.+.+...... ..+++|+|+.+--+
T Consensus 75 D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 75 DLSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 77776654443322 23578998887644
No 496
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.90 E-value=4 Score=32.91 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILK 113 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~ 113 (180)
...++.+||=.|+|. |..++.+|+. |. +|++++.+++-++.++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 345778999998764 6666666654 66 7999998887666654
No 497
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.79 E-value=8.7 Score=30.79 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHHh
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKIIQ 149 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++++||=.|+ +|.+|..+++ .|.+|++++.++.........+.. ..++.+...+..+.+.+....
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~- 77 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---------GDRLRLFRADLQEEGSFDEAV- 77 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---------CCeEEEEECCCCCHHHHHHHH-
Confidence 5678998885 6777776665 478999988765432222211111 123556666666655444332
Q ss_pred hCCCCCcEEEEcccc
Q 030274 150 KYPGGFDLILGADIY 164 (180)
Q Consensus 150 ~~~~~fD~Ii~~d~~ 164 (180)
..+|+|+-+-..
T Consensus 78 ---~~~d~Vih~A~~ 89 (353)
T PLN02896 78 ---KGCDGVFHVAAS 89 (353)
T ss_pred ---cCCCEEEECCcc
Confidence 357887766543
No 498
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.75 E-value=13 Score=29.27 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=61.5
Q ss_pred CCCCeEEEeCCcCCh---HHHHHhhcCCeEEEecCCHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH-
Q 030274 73 LQASSILELGSGVGV---TGILCSRFCREVLLTDHNEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII- 148 (180)
Q Consensus 73 ~~~~~vLdlG~G~G~---~~l~la~~~~~V~~~D~~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (180)
..++.|+==||-+|+ ++..+++.|++++.+-....-++...+-++..+.. . ++.+.++|..+.+......
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~-----~-~v~~~~~Dvs~~~~~~~~~~ 83 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL-----E-KVLVLQLDVSDEESVKKFVE 83 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc-----C-ccEEEeCccCCHHHHHHHHH
Confidence 367899999998874 45556777998888888787788776666665421 1 5778899999887655443
Q ss_pred --hhCCCCCcEEEEccc
Q 030274 149 --QKYPGGFDLILGADI 163 (180)
Q Consensus 149 --~~~~~~fD~Ii~~d~ 163 (180)
....++.|+.|.|--
T Consensus 84 ~~~~~fg~vDvLVNNAG 100 (282)
T KOG1205|consen 84 WAIRHFGRVDVLVNNAG 100 (282)
T ss_pred HHHHhcCCCCEEEecCc
Confidence 234578999998864
No 499
>PLN02827 Alcohol dehydrogenase-like
Probab=82.73 E-value=4.5 Score=32.94 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCCCCeEEEeCCcC-ChHHHHHhhc-CC-eEEEecCCHHHHHHHH
Q 030274 71 DVLQASSILELGSGV-GVTGILCSRF-CR-EVLLTDHNEEVLKILK 113 (180)
Q Consensus 71 ~~~~~~~vLdlG~G~-G~~~l~la~~-~~-~V~~~D~~~~~l~~~~ 113 (180)
...++.+||=.|+|. |..++.+|+. |. .|+++|.+++-.+.++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 345688999998875 6666666664 65 6899998887666654
No 500
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=82.59 E-value=18 Score=27.03 Aligned_cols=83 Identities=10% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCCeEEEeCCcCChHHHHHhh----cCCeEEEecC-CHHHHHHHHHHHHHhcCCCCCCCCCcEEEEEeecCCCchhhHHH
Q 030274 74 QASSILELGSGVGVTGILCSR----FCREVLLTDH-NEEVLKILKKNIEHHTSSENPNSDAGLAVAKLEWGNSDQINKII 148 (180)
Q Consensus 74 ~~~~vLdlG~G~G~~~l~la~----~~~~V~~~D~-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
+++++|=.|+ +|.+|..+++ .|.+|+++.. ++...+.....+...+ .++.+...|..+.+.+....
T Consensus 5 ~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~ 75 (247)
T PRK12935 5 NGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG--------HDVYAVQADVSKVEDANRLV 75 (247)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC--------CeEEEEECCCCCHHHHHHHH
Confidence 5678999995 5556665554 5788887653 3333333322232221 24666778888766554443
Q ss_pred hh---CCCCCcEEEEccccc
Q 030274 149 QK---YPGGFDLILGADIYI 165 (180)
Q Consensus 149 ~~---~~~~fD~Ii~~d~~y 165 (180)
.. ..++.|+|+.+-...
T Consensus 76 ~~~~~~~~~id~vi~~ag~~ 95 (247)
T PRK12935 76 EEAVNHFGKVDILVNNAGIT 95 (247)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 22 124689998876553
Done!