BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030275
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 127/149 (85%), Gaps = 1/149 (0%)
Query: 31 GVLPAVCRRGISLIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAAE 90
GV+P+ ++G+S +VKAEH S +SS++ DKC RR ++ GV+APW+SL+++ P SFAAE
Sbjct: 18 GVIPS-SKKGLSFLVKAEHHSSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAE 76
Query: 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
S KGFL+V+D KD Y+F+YPFGWQEV+IEGQDKV+KDVIEPLESVSVNL+PT KQ I++F
Sbjct: 77 SKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEF 136
Query: 151 GPPQEVAETLIKKFLAPPTQKTKIIAASE 179
GPP+++AETLIKK LAPP QKT +I ASE
Sbjct: 137 GPPKQIAETLIKKVLAPPNQKTTLIDASE 165
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 46 KAEHASMASSANSLDKCGRRQ-MIAVGVIAPWVSLVNQTPPS---FAAESNKGFLSVTDK 101
KA+ + S + RRQ ++ VG +LV + P+ A E K + D+
Sbjct: 41 KADSSESTYQKGSGNNWKRRQALVGVG------TLVATSIPATLLLAEEIPKSYSPFVDR 94
Query: 102 KDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAETLI 161
+DGYS+ YP W+E D FKD L++V V IPT K DI + GP +EV L+
Sbjct: 95 EDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLV 154
Query: 162 KKFLAPPTQKTKIIAASE 179
K A P Q I E
Sbjct: 155 KHKFAAPNQVATIYDMKE 172
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 63 GRRQMIAVGVIAPWVSLVNQT--PPSFAAESNKGFLSVTDKKDGYSFVYPFGWQEVIIEG 120
GRR+ + +G++ + +V+Q P +FA S F D DGYSF YP W +V G
Sbjct: 78 GRRKSMMMGLLMSGL-IVSQANLPTAFA--STPVFREYIDTFDGYSFKYPQNWIQVRGAG 134
Query: 121 QDKVFKDVIEPLESVSVNLIPTGKQD---IRDFGPPQEVAETLIKKFL 165
D F+D + E++SV + + D G P+EV + +++++L
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYL 182
>sp|P82537|TL1X_SPIOL Thylakoid lumenal 17 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 30
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 89 AESNKGFLSVTDKKDGYSFVYPFGWQEVII 118
AES KGFL V DKKDGY+F+YPFG QEV I
Sbjct: 1 AESKKGFLPVIDKKDGYTFLYPFGGQEVSI 30
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 43 LIVKAEHASMASSANSLDKCGRRQMI-------AVGV-IAPWVSLVNQTPPSFA-AESNK 93
LI +A+ +S + NS RR + AVG IAP + + F A++N
Sbjct: 36 LICRAQKSS-DTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNT 94
Query: 94 GFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDF 150
FL T DG++ + P W +EV GQ ++D + +VSV + PT K+ I D+
Sbjct: 95 DFLPYTG--DGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDY 152
Query: 151 GPPQEVAETL 160
G P+E T+
Sbjct: 153 GTPEEFLSTV 162
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
++N F +VT DG+ + P W +EV GQ ++D + +V V + PT K+
Sbjct: 92 KTNTDFQTVT--GDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKS 149
Query: 147 IRDFGPPQE 155
I+D+G P++
Sbjct: 150 IKDYGSPEQ 158
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ P W +EV GQ F+D + +V V + PT K+ I DFG P++
Sbjct: 104 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQ 159
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ P W +EV GQ F+D + +V V + PT K+ I DFG P++
Sbjct: 103 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQ 158
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
+SN +L + DG+ P W +E GQ ++D + ++SV + PT K+
Sbjct: 90 KSNTDYLPYSG--DGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKS 147
Query: 147 IRDFGPPQE 155
I+DFG P+E
Sbjct: 148 IKDFGSPEE 156
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
+ N FL+ DG+ P W +EV GQ ++D + ++ V + PT K+
Sbjct: 95 KENTDFLAYNG--DGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKS 152
Query: 147 IRDFGPPQE 155
I D+G P+E
Sbjct: 153 ITDYGSPEE 161
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ P W +E+ GQ F+D + +++V + PT K+ I D+G P+E
Sbjct: 101 DGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEE 156
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 99 TDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQEVAE 158
TD +G++ + P + +V G + +F+++ ++ V + P + + FG PQ VA+
Sbjct: 79 TDSNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVAD 138
Query: 159 TLIK 162
LI
Sbjct: 139 KLIN 142
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ P W +EV GQ ++D + +++V + PT K+ I D+G P+E
Sbjct: 98 DGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEE 153
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ P W +E+ GQ ++D + ++ V + PT K+ I D+G P+E
Sbjct: 98 DGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEE 153
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 43 LIVKAEHASMASSANSLDKCGRRQMIAVGVIAPWVSLVNQTPPSFAA-----ESNKGFLS 97
LI +A+ AS+A + +I I VS + A + N FL
Sbjct: 33 LICRAQKQDDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLP 92
Query: 98 VTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQ 154
DG+ P W +EV GQ ++D + ++ V + PT K+ I D+G P+
Sbjct: 93 YNG--DGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
Query: 155 E 155
E
Sbjct: 151 E 151
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 90 ESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQD 146
++N F ++ DG+ P W +EV GQ ++D + +++V + PT K+
Sbjct: 44 KTNTDFTAI--NGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKS 101
Query: 147 IRDFGPPQE 155
I D+G P+E
Sbjct: 102 ITDYGSPEE 110
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 103 DGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
DG+ + P W +E GQ ++D + ++SV + PT K+ I DFG P++
Sbjct: 105 DGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPED 160
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 89 AESNKGFLSVTDKKDGYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQ 145
A+ N F++ + +G+ + P W +E GQ ++D + ++SV + PT K+
Sbjct: 85 AKKNTDFVAYSG--EGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKK 142
Query: 146 DIRDFGPPQE 155
I D+G P+E
Sbjct: 143 TITDYGSPEE 152
>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum
GN=PSBP PE=1 SV=1
Length = 259
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 26/156 (16%)
Query: 7 SPSSSIHQTSFLNSLPQ---LGVQKYGGVLPAVCRRGISLIVKAEHASMASSANSLDKCG 63
+P+ ++ Q + + P QK V+ AV R ++L V A++ S
Sbjct: 16 TPTRTLSQRQVVTTKPNHIVCKAQKQDDVVDAVVSRRLALSVLIGAAAVGSK-------- 67
Query: 64 RRQMIAVGVIAPWVSLVNQTPPSFA-AESNKGFLSVTDKKDGYSFVYPFGW---QEVIIE 119
++P + + F A++N +L DG+ + P W +E
Sbjct: 68 ---------VSPADAAYGEAANVFGKAKTNTDYLPYN--GDGFKLLVPAKWNPSKEREFP 116
Query: 120 GQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
GQ ++D + +VSV + T K+ I D+G P+E
Sbjct: 117 GQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEE 152
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 104 GYSFVYPFGW---QEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE 155
G+ P W +EV GQ ++D + +++V + PT K+ I D+G P+E
Sbjct: 102 GFKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDYGAPEE 156
>sp|A5CR89|SYL_CLAM3 Leucine--tRNA ligase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=leuS PE=3 SV=1
Length = 851
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 KKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
++ G++ ++P GW + ++ K ++P E N I T KQ ++ +G
Sbjct: 76 RQQGFNVLHPIGWDSFGLPAENAAIKRGVDPREWTYAN-IETQKQSMKRYG 125
>sp|B0RDA6|SYL_CLAMS Leucine--tRNA ligase OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=leuS PE=3
SV=1
Length = 852
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 101 KKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFG 151
++ G++ ++P GW + ++ K ++P E N I T KQ ++ +G
Sbjct: 76 RQQGFNVLHPIGWDSFGLPAENAAIKRGVDPREWTYAN-IETQKQSMKRYG 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,781,877
Number of Sequences: 539616
Number of extensions: 2569230
Number of successful extensions: 6615
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6598
Number of HSP's gapped (non-prelim): 23
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)