Query 030275
Match_columns 180
No_of_seqs 146 out of 204
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.8 4.6E-25 1.6E-29 176.7 0.0 90 90-179 9-105 (170)
2 2xb3_A PSBP protein; photosynt 99.9 4E-23 1.4E-27 163.7 10.5 89 91-179 4-96 (165)
3 1v2b_A 23-kDa polypeptide of p 99.9 6.5E-23 2.2E-27 166.6 4.9 88 90-179 4-109 (177)
4 3hlz_A Uncharacterized protein 88.8 0.55 1.9E-05 40.1 5.1 46 96-141 5-50 (269)
5 1tu1_A Hypothetical protein PA 49.3 27 0.00093 26.1 5.0 20 95-116 3-22 (148)
6 2l5f_A PRE-mRNA-processing fac 44.7 39 0.0013 23.6 5.0 38 90-128 11-72 (92)
7 1g6p_A Cold shock protein TMCS 25.6 52 0.0018 21.5 2.8 27 94-127 3-29 (66)
8 3a0j_A Cold shock protein; OB- 25.4 60 0.0021 21.7 3.1 19 94-112 4-22 (73)
9 3rq0_A Glycosyl hydrolases fam 23.7 22 0.00074 30.0 0.7 56 61-117 6-64 (269)
10 3i2z_B RNA chaperone, negative 22.1 76 0.0026 21.1 3.1 28 93-126 7-34 (71)
11 3cam_A Cold-shock domain famil 21.6 80 0.0027 20.7 3.1 19 94-112 4-22 (67)
12 2khr_A Protein MBTH; sideropho 20.9 1E+02 0.0035 21.4 3.6 29 92-120 13-46 (74)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.82 E-value=4.6e-25 Score=176.75 Aligned_cols=90 Identities=30% Similarity=0.539 Sum_probs=85.3
Q ss_pred ccccCceeeeeCCCCeEEeccCCCeeeeec----CceeeeeCCCCCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHh
Q 030275 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVIIE----GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKF 164 (180)
Q Consensus 90 ~~~~gf~~y~D~~dGYsf~yP~~W~~v~~~----G~dv~F~D~~~~~eNVsV~Vsp~~k-~sI~dlG~PeeVa~~L~~~~ 164 (180)
+.++||++|+|+.|||+|+||++|++++++ |+|++|+|+++.++||+|+|+|+.+ ++|+|||+|++|+++|++++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 356899999999999999999999999988 9999999999999999999999998 99999999999999999999
Q ss_pred cCCC--CCceeeeecee
Q 030275 165 LAPP--TQKTKIIAASE 179 (180)
Q Consensus 165 ~~~p--~~~a~Li~a~e 179 (180)
++++ ++.++||++.+
T Consensus 89 ~~~~~~~~~a~li~a~~ 105 (170)
T 2lnj_A 89 NDASQGDRQAELINAEA 105 (170)
Confidence 9988 78999999875
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.89 E-value=4e-23 Score=163.67 Aligned_cols=89 Identities=36% Similarity=0.721 Sum_probs=83.3
Q ss_pred cccCceeeeeCCCCeEEeccCCCeeeeec-CceeeeeCCCCCCcceEEEEecCCC-CCcccCCCHHHHHHHHHHHhcCCC
Q 030275 91 SNKGFLSVTDKKDGYSFVYPFGWQEVIIE-GQDKVFKDVIEPLESVSVNLIPTGK-QDIRDFGPPQEVAETLIKKFLAPP 168 (180)
Q Consensus 91 ~~~gf~~y~D~~dGYsf~yP~~W~~v~~~-G~dv~F~D~~~~~eNVsV~Vsp~~k-~sI~dlG~PeeVa~~L~~~~~~~p 168 (180)
.++||++|.|+++||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++|+++|++++++++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~~~ 83 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPS 83 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTSCT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhcCC
Confidence 46899999999999999999999999998 9999999999999999999999997 999999999999999999999987
Q ss_pred --CCceeeeecee
Q 030275 169 --TQKTKIIAASE 179 (180)
Q Consensus 169 --~~~a~Li~a~e 179 (180)
++.++||++.+
T Consensus 84 ~~~~~~~l~~a~~ 96 (165)
T 2xb3_A 84 ESGRSSALIAATS 96 (165)
T ss_dssp TSSCEEEEEEEEE
T ss_pred CCCcceEEEEeee
Confidence 78999999875
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.87 E-value=6.5e-23 Score=166.65 Aligned_cols=88 Identities=25% Similarity=0.447 Sum_probs=70.7
Q ss_pred ccccCceeeeeCCCCeEEeccCCCeeee---ecCceeeeeCCCCCCcceEEEEecCCCCCcccCCCHHH----HHHHHHH
Q 030275 90 ESNKGFLSVTDKKDGYSFVYPFGWQEVI---IEGQDKVFKDVIEPLESVSVNLIPTGKQDIRDFGPPQE----VAETLIK 162 (180)
Q Consensus 90 ~~~~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~F~D~~~~~eNVsV~Vsp~~k~sI~dlG~Pee----Va~~L~~ 162 (180)
+.++||++|. +|||+|+||.+|+++. ++|+|++|+|+++.++||+|+|+|+++++|+|||+|++ |+++|++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~ 81 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 81 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--
T ss_pred CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHH
Confidence 4568999997 9999999999999654 56999999999999999999999999999999999999 6889999
Q ss_pred HhcCCC-----C------Cceeeeecee
Q 030275 163 KFLAPP-----T------QKTKIIAASE 179 (180)
Q Consensus 163 ~~~~~p-----~------~~a~Li~a~e 179 (180)
++++++ + ++++||++.+
T Consensus 82 ~~~~~~~~~~~gf~~~~~~~a~ll~a~~ 109 (177)
T 1v2b_A 82 QAYSGKTDSEGGFESDAVAIANVLETST 109 (177)
T ss_dssp ----------------CCCEEEEEEEEE
T ss_pred HhhcccccccCCcccCcccceEEEEeEE
Confidence 998862 3 7899999875
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=88.79 E-value=0.55 Score=40.07 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=36.7
Q ss_pred eeeeeCCCCeEEeccCCCeeeeecCceeeeeCCCCCCcceEEEEec
Q 030275 96 LSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKDVIEPLESVSVNLIP 141 (180)
Q Consensus 96 ~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D~~~~~eNVsV~Vsp 141 (180)
+.|..|+.=|+..||.+|+|++-..-.-.|.+|..=+.|..+.--.
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk 50 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK 50 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc
Confidence 5688899999999999999987654455677888888998866544
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=49.29 E-value=27 Score=26.13 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.4
Q ss_pred ceeeeeCCCCeEEeccCCCeee
Q 030275 95 FLSVTDKKDGYSFVYPFGWQEV 116 (180)
Q Consensus 95 f~~y~D~~dGYsf~yP~~W~~v 116 (180)
+..| .-+.++|..|.+|+..
T Consensus 3 m~~y--~~~Egsl~lP~gw~D~ 22 (148)
T 1tu1_A 3 MTLY--RLHEADLEIPDAWQDQ 22 (148)
T ss_dssp EEEE--ECSSEEEEEETTSEEC
T ss_pred CceE--EECCEEEeCCCCcEee
Confidence 4567 5889999999999943
No 6
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=44.68 E-value=39 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=27.0
Q ss_pred ccccCceeeeeCCCCeEEec------------------------cCCCeeeeecCceeeeeCC
Q 030275 90 ESNKGFLSVTDKKDGYSFVY------------------------PFGWQEVIIEGQDKVFKDV 128 (180)
Q Consensus 90 ~~~~gf~~y~D~~dGYsf~y------------------------P~~W~~v~~~G~dv~F~D~ 128 (180)
..+.|+..+.|+ +|..|+| |.+|.+..-..-.+.|.+.
T Consensus 11 ~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~~~~~e~~~~~~~W~~~~~~~Gr~Yy~N~ 72 (92)
T 2l5f_A 11 GAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNS 72 (92)
T ss_dssp BTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGGTCHHHHHHHSCSEEEEECTTCCEEEEET
T ss_pred CCCCCcEEEEcC-CCCEEEEECCCCceecccCccccccccccccccceEEEECCCCCEEEEEC
Confidence 456899999988 8988888 5789886544233555554
No 7
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=25.62 E-value=52 Score=21.54 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=18.3
Q ss_pred CceeeeeCCCCeEEeccCCCeeeeecCceeeeeC
Q 030275 94 GFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFKD 127 (180)
Q Consensus 94 gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~D 127 (180)
|-...-|...||-|+-|.+ |.|++|+-
T Consensus 3 G~Vk~fn~~kGfGFI~~~~-------g~dvFvH~ 29 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE-------GGDVFVHW 29 (66)
T ss_dssp EEEEEEETTTTEEEEEETT-------SCBCBBCS
T ss_pred EEEEEEECCCCEEEEecCC-------CceEEEEh
Confidence 3344567889999999974 35555543
No 8
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=25.43 E-value=60 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.6
Q ss_pred CceeeeeCCCCeEEeccCC
Q 030275 94 GFLSVTDKKDGYSFVYPFG 112 (180)
Q Consensus 94 gf~~y~D~~dGYsf~yP~~ 112 (180)
|-...-|...||-|+-|.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 4455667889999999974
No 9
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=23.66 E-value=22 Score=29.96 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHHhHhhhcCCCCcccccccccCc-eeeeeCCCCe--EEeccCCCeeee
Q 030275 61 KCGRRQMIAVGVIAPWVSLVNQTPPSFAAESNKGF-LSVTDKKDGY--SFVYPFGWQEVI 117 (180)
Q Consensus 61 ~~~RR~aL~~~~~aa~~s~~~~a~~A~Ae~~~~gf-~~y~D~~dGY--sf~yP~~W~~v~ 117 (180)
.+.||.+|.....+++++++ +...|.|++...|+ ..+.|..||= +.+=++.|+-..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~p~~~g~~lvw~DeF~g~~g~~~d~~~W~~~~ 64 (269)
T 3rq0_A 6 NVDRRQMLLLSGLGATAAVL-PVPRAAAVPNQTAASYVFADEFDGPAGSAPSAAKWTIAK 64 (269)
T ss_dssp -----------------------------------CCSEEECCCSCTTCCCCTTTEEECS
T ss_pred hccchhHHHHHHHHHHHHhc-cchhcccCCCCCCCeEEEEecCCCCCCCCCCcccCEEec
Confidence 45688777532222222222 23333444433444 3678888873 355677888654
No 10
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.13 E-value=76 Score=21.06 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=19.7
Q ss_pred cCceeeeeCCCCeEEeccCCCeeeeecCceeeee
Q 030275 93 KGFLSVTDKKDGYSFVYPFGWQEVIIEGQDKVFK 126 (180)
Q Consensus 93 ~gf~~y~D~~dGYsf~yP~~W~~v~~~G~dv~F~ 126 (180)
.|-...-|...||-|+-|.+ .|.|++|+
T Consensus 7 ~G~Vk~fn~~kGfGFI~~~~------g~~dvFvH 34 (71)
T 3i2z_B 7 KGNVKWFNESKGFGFITPED------GSKDVFVH 34 (71)
T ss_dssp EEEEEEEETTTTEEEEEETT------CCCCEEEE
T ss_pred cEEEEEEECCCCcEEEecCC------CCccEEEE
Confidence 45556678899999999875 13566654
No 11
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=21.60 E-value=80 Score=20.75 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=14.7
Q ss_pred CceeeeeCCCCeEEeccCC
Q 030275 94 GFLSVTDKKDGYSFVYPFG 112 (180)
Q Consensus 94 gf~~y~D~~dGYsf~yP~~ 112 (180)
|-...-|...||-|+-|.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 4445667899999999875
No 12
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=20.87 E-value=1e+02 Score=21.35 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=23.8
Q ss_pred ccCceeeeeCCCCeEEe-----ccCCCeeeeecC
Q 030275 92 NKGFLSVTDKKDGYSFV-----YPFGWQEVIIEG 120 (180)
Q Consensus 92 ~~gf~~y~D~~dGYsf~-----yP~~W~~v~~~G 120 (180)
..-|...++.++-|++- +|.||..+-++|
T Consensus 13 ~~~f~VlvN~E~QySLWP~~~~vP~GW~~v~~~~ 46 (74)
T 2khr_A 13 NGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEA 46 (74)
T ss_dssp CSCEEEEEETTCSCEEEETTSCCCSSEEEEECSC
T ss_pred CCeEEEEEcCCCccccCcCcCCCCCCcccCCCCC
Confidence 35688999999999984 999999877665
Done!