BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030276
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
Length = 178
Score = 350 bits (897), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/178 (93%), Positives = 173/178 (97%)
Query: 3 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62
MVTFRFHQYQVVGR LP+ETDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+
Sbjct: 1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 63 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122
LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120
Query: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPP+RKL+T YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB
PE=1 SV=2
Length = 178
Score = 341 bits (874), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/178 (90%), Positives = 170/178 (95%)
Query: 3 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62
M FRFHQYQVVGRALPTE D PKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+
Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 63 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122
LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPP+RKL+TTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC
PE=2 SV=1
Length = 178
Score = 338 bits (867), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/178 (89%), Positives = 167/178 (93%)
Query: 3 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62
M FRFHQYQVVGRALPTE DEHPKIYRMKLW NEV AKSKFWY++RKLKKVKKSNGQ+
Sbjct: 1 MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60
Query: 63 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMY EMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120
Query: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPP+RKL+TTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica
GN=RPL18A PE=2 SV=1
Length = 178
Score = 335 bits (860), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 159/178 (89%), Positives = 167/178 (93%)
Query: 3 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQV 62
M FRFHQYQVVGR LPT TDEHPKIYRMKLWATNEVRAKSKFWY+LRKLKKVKKSNGQ+
Sbjct: 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 63 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 122
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 123 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
PCIQIIKTAT+ KLCKR++TKQFH S IKFPLV+RKVRPPTRKL+TT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a
PE=3 SV=2
Length = 171
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 5/172 (2%)
Query: 9 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEI 68
H++QVVGR +PTE D +PKIYRM+L+A + AKS+FWY+L K+ K+KKS G++L + EI
Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63
Query: 69 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQII 128
FE P K+KN+G+++RY SR+G HN+YKEYRD T GAV QMY+EMASRH R I II
Sbjct: 64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123
Query: 129 KTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A L +R +TKQFH+SKIKFPL R K ++T+ A+RPN F
Sbjct: 124 DIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTFF 170
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1
Length = 176
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1
Length = 176
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LPT P +YRM+++A N V AKS+FWY++ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2
SV=1
Length = 177
Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 115/146 (78%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+V+GR LP+E++ P +Y+M++++ +++ AKS+FWY+LR+LKK KK+ G++++I EI
Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIP 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+ IQIIK
Sbjct: 69 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPL 155
I A C+R KQFHNS I+FPL
Sbjct: 129 VEVIKASACRRPQVKQFHNSTIRFPL 154
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A
PE=1 SV=1
Length = 177
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 118/158 (74%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LP+E + +Y+M+++A + + AKS+FWY+LR+LKK KK+ G++++I +++
Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVY 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQIIK
Sbjct: 69 ETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKL 167
+IPA +R KQFH+SKIKFPLV R RKL
Sbjct: 129 VDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
Length = 176
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 123/171 (71%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK++G+++ +F
Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVF 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|P0DJ18|RL18A_TETTH 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A
PE=1 SV=1
Length = 189
Score = 182 bits (463), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 118/174 (67%)
Query: 6 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAI 65
+ QY V LP E P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L++
Sbjct: 16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSV 75
Query: 66 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCI 125
NEI+EK+ +K YGI L+YQSRT HNMYKEYRD +LNGAV Q+ +MA HR + I
Sbjct: 76 NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTI 135
Query: 126 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 179
QII+TAT+ K KR +T N+ +KFP+V RP +K RT YKA+RP F
Sbjct: 136 QIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2
SV=1
Length = 176
Score = 182 bits (463), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 120/171 (70%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + + RP F
Sbjct: 129 VQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTFF 176
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3
SV=2
Length = 180
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 8 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINE 67
++Y VVGR +PTE + I++M+++ATN V AKS+FWY++ L++VKK+NG++L+I +
Sbjct: 10 LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69
Query: 68 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQI 127
+FEKNP +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++ I I
Sbjct: 70 VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129
Query: 128 IKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPN 177
+K T+ A+ KR K FH++KI+FPL R + RK + + +R N
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTK---RKNLSVFTTARQN 176
>sp|P0CX24|RL20B_YEAST 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1
Length = 172
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 8 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINE 67
F +YQV+GR LPTE+ PK++RM+++A+NEV AKS++WY+L+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 68 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQI 127
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 128 IKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 179
+K A I KR+ KQF +KFPL R +K T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171
>sp|P0CX23|RL20A_YEAST 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1
Length = 172
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 8 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINE 67
F +YQV+GR LPTE+ PK++RM+++A+NEV AKS++WY+L+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 68 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQI 127
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 128 IKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 179
+K A I KR+ KQF +KFPL R +K T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
Length = 176
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 3/171 (1%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWY++ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
EK P K+KN+G+WLR SR+G HNMY+EYRD T + AV Q Y +M +RHR R+ I I+K
Sbjct: 69 EKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMK 128
Query: 130 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLFM 180
I A C+R + KQFH+SKIKFPL R +R R+ + RPN F
Sbjct: 129 VQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTFF 176
>sp|P05732|RL20_SCHPO 60S ribosomal protein L20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl20a PE=1 SV=3
Length = 176
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 10 QYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIF 69
+YQVVGR +PTE + PK++RM+L+A NE AKS++WY+L+ + KVKK+ G+++AINEI
Sbjct: 5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEIS 64
Query: 70 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIK 129
E P K K +GIW+RY SR+G HNMYKE+RDTT GAVE MY +MA+RHR R I+I+K
Sbjct: 65 EPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILK 124
Query: 130 TATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPTRKLRTTYKASRPNLF 179
+ K +R KQ N +KFPL R+ + + RP+ F
Sbjct: 125 VVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
>sp|A6UT94|RLX_META3 50S ribosomal protein LX OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rplX PE=3 SV=1
Length = 73
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPA 135
KEY+ A+E++Y+E+ S+H V+ I+II+ + I A
Sbjct: 22 KEYKAMKEEDAIEKIYSEIGSKHNVKRASIKIIEVSEISA 61
>sp|A6VI47|RLX_METM7 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rplX PE=3 SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATI 133
KEY + A+E MY+EM S+H V+ I+I++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRAYIKIVEVSEI 59
>sp|Q494D6|HIS6_BLOPB Imidazole glycerol phosphate synthase subunit HisF OS=Blochmannia
pennsylvanicus (strain BPEN) GN=hisF PE=3 SV=1
Length = 258
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 12 QVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKK-SNGQVL--AINEI 68
Q V ++ T + KIY++K + + RAK W L +KKV++ G+++ +N+
Sbjct: 123 QCVVVSIDTWHNPQKKIYQVKCYTGDSTRAKITTWQTLDWVKKVQEYGAGEIVLNMMNQD 182
Query: 69 FEKNPTKI-------KNYGIWLRYQSRTG-YHNMYKEYRDTTLNGAVEQ--MYNEMASRH 118
KN + K+ + L G Y + + +RD ++GA+ +N++ H
Sbjct: 183 GMKNGYDLDQLRNIRKHCQVPLIASGGAGTYQHFLEAFRDADVDGALAASVFHNQIIDIH 242
Query: 119 RVRSPCIQIIKTATIPAKLC 138
+++ Q + I +LC
Sbjct: 243 KLK----QFLNKEGIKIRLC 258
>sp|A4G0D0|RLX_METM5 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rplX PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATI 133
KEY + A+E MY+EM S+H V+ I++++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRANIKVVEISEI 59
>sp|A9A8N2|RLX_METM6 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rplX PE=3 SV=1
Length = 76
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATI 133
KEY + A+E MY+EM S+H V+ I +++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHSVKRAYINVLEVSEI 59
>sp|Q6M157|RLX_METMP 50S ribosomal protein LX OS=Methanococcus maripaludis (strain S2 /
LL) GN=rplX PE=3 SV=1
Length = 76
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAK 136
KEY N A+E MY+E+ S+H V+ I++++ + I +
Sbjct: 22 KEYNVLKENDALETMYSEIGSKHAVKRANIKVVEISEISVE 62
>sp|A6UR53|RLX_METVS 50S ribosomal protein LX OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rplX PE=3 SV=1
Length = 76
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 96 KEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATI 133
KEY + A+E MY++M S+H V+ IQ+++ + I
Sbjct: 22 KEYNVLKESDALEIMYSDMGSKHSVKRANIQVLEISEI 59
>sp|B4N8G7|CRBN_DROWI Protein cereblon homolog OS=Drosophila willistoni GN=GK12054 PE=3
SV=1
Length = 612
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 57 KSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT----LNGAVEQMYN 112
K +V + E F P K + G R++ NMY+ Y+ T+ L+ +E Y
Sbjct: 355 KCYSKVKILPEYFLPEPLKCIDMGSMSRFRDIPSMRNMYQRYQITSTPWPLDACLEYSYT 414
Query: 113 EMASRHRVRSPCIQIIKTATIP 134
++ + R + ++I K T+P
Sbjct: 415 DIVEKARKK---LEIHKIDTMP 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,756,242
Number of Sequences: 539616
Number of extensions: 2202871
Number of successful extensions: 5248
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5219
Number of HSP's gapped (non-prelim): 38
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)