Query 030276
Match_columns 180
No_of_seqs 136 out of 248
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0829 60S ribosomal protein 100.0 3.3E-95 7E-100 589.1 12.0 169 9-180 1-169 (169)
2 PF01775 Ribosomal_L18ae: Ribo 100.0 2.4E-72 5.3E-77 441.2 11.4 124 8-131 1-124 (124)
3 PRK00773 rplX 50S ribosomal pr 100.0 3.9E-34 8.3E-39 208.2 5.9 73 76-148 2-74 (76)
4 COG2157 RPL20A Ribosomal prote 100.0 3.2E-30 6.9E-35 191.5 6.0 84 71-154 2-85 (85)
5 PRK00773 rplX 50S ribosomal pr 51.1 30 0.00066 25.2 4.1 60 8-70 2-61 (76)
6 KOG0704 ADP-ribosylation facto 44.1 33 0.00071 32.3 4.1 43 48-92 6-49 (386)
7 KOG0149 Predicted RNA-binding 35.8 28 0.0006 31.0 2.2 24 59-82 36-59 (247)
8 COG5347 GTPase-activating prot 34.9 35 0.00075 31.1 2.8 40 52-92 10-50 (319)
9 COG3500 Phage protein D [Gener 32.4 19 0.00042 33.4 0.7 40 108-156 122-161 (350)
10 PHA03066 Hypothetical protein; 31.2 29 0.00064 27.4 1.5 22 72-93 60-81 (110)
11 KOG0126 Predicted RNA-binding 27.0 71 0.0015 27.8 3.2 28 60-88 60-87 (219)
12 COG1727 RPL18A Ribosomal prote 26.1 14 0.00031 29.6 -1.1 25 50-74 90-114 (122)
13 COG0509 GcvH Glycine cleavage 25.4 29 0.00063 28.1 0.5 27 58-84 75-104 (131)
14 PF06129 Chordopox_G3: Chordop 23.4 49 0.0011 26.0 1.4 13 80-92 67-79 (109)
15 COG5614 Bacteriophage head-tai 23.0 85 0.0018 24.8 2.7 27 115-144 74-100 (109)
16 smart00684 DM15 Tandem repeat 22.1 16 0.00034 23.7 -1.3 16 92-107 4-19 (39)
No 1
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-95 Score=589.10 Aligned_cols=169 Identities=63% Similarity=1.056 Sum_probs=165.7
Q ss_pred eEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccCCCceeeeeeeEEEEecc
Q 030276 9 HQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSR 88 (180)
Q Consensus 9 ~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY~Sr 88 (180)
+||+||||+||||++|.|+||+|+|||||||+|||||||||+||+||||++||||+|+||+|++|+.|||||||||||||
T Consensus 1 kEY~VvGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR 80 (169)
T KOG0829|consen 1 KEYQVVGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR 80 (169)
T ss_pred CceEEeeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCcccC
Q 030276 89 TGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLR 168 (180)
Q Consensus 89 sgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~~~~~ 168 (180)
||||||||||||+|.+|||||||+|||||||||+++||||+|+||++++|+|+.++||||++|+||||||++.. +.+
T Consensus 81 sG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqFhd~kikFPL~~rv~~~---k~~ 157 (169)
T KOG0829|consen 81 SGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQFHDSKIKFPLPHRVVNR---KSK 157 (169)
T ss_pred CcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHhhccCcccccccccccc---ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866 557
Q ss_pred CceeecCCCCCC
Q 030276 169 TTYKASRPNLFM 180 (180)
Q Consensus 169 ~~F~~~rP~t~~ 180 (180)
++|++.||||||
T Consensus 158 ~~fs~~rP~tf~ 169 (169)
T KOG0829|consen 158 KTFSTKRPSTFF 169 (169)
T ss_pred cccccCCCcccC
Confidence 899999999997
No 2
>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.
Probab=100.00 E-value=2.4e-72 Score=441.15 Aligned_cols=124 Identities=63% Similarity=1.119 Sum_probs=112.4
Q ss_pred eeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccCCCceeeeeeeEEEEec
Q 030276 8 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQS 87 (180)
Q Consensus 8 l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY~S 87 (180)
|+||+|+||+||||++|+|+||+|+|||||+|+|||||||||+||+|+||++||||+|++|+|++|+.||||||||+|||
T Consensus 1 l~ey~vvgr~lpt~k~~~p~iy~m~ifa~n~vvAkSrfwy~~~~~~K~Kk~~geiv~~~~i~ek~p~~VKnfgI~lry~s 80 (124)
T PF01775_consen 1 LKEYQVVGRKLPTEKEPNPPIYRMRIFAPNHVVAKSRFWYFLRKLKKMKKTSGEIVSCKEIFEKNPTKVKNFGIWLRYDS 80 (124)
T ss_dssp -EEEEEEEEETT-STTS---EEEEEEEESSHHHHHHHHHHHHHHCTS--STTEEEEEEEEE-SSSTTS-EEEEEEEEEEE
T ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEecCCcEEEEhhHHHHHHHHHhhhcccceEEEeEcccCCCCcceeEEEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEee
Q 030276 88 RTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTA 131 (180)
Q Consensus 88 rsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVe 131 (180)
|+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus 81 r~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve 124 (124)
T PF01775_consen 81 RSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE 124 (124)
T ss_dssp SSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred CCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence 99999999999999999999999999999999999999999996
No 3
>PRK00773 rplX 50S ribosomal protein LX; Validated
Probab=100.00 E-value=3.9e-34 Score=208.23 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=71.8
Q ss_pred eeeeeeEEEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCcccccccc
Q 030276 76 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN 148 (180)
Q Consensus 76 VKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~ 148 (180)
+||||||++|+||+|+|||||||||++++|||+|||+||||||++++++|+|++|+||+++||+||+++||+.
T Consensus 2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~ 74 (76)
T PRK00773 2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK 74 (76)
T ss_pred ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999974
No 4
>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.2e-30 Score=191.51 Aligned_cols=84 Identities=31% Similarity=0.598 Sum_probs=81.6
Q ss_pred CCCceeeeeeeEEEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCccccccccCC
Q 030276 71 KNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSK 150 (180)
Q Consensus 71 k~p~~VKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~k 150 (180)
..|..++|+|||+.|||++|+||||||+||+++++|+|.+||||||||++++++|+|++|+||+++|+.||.|+||++.+
T Consensus 2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~ 81 (85)
T COG2157 2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED 81 (85)
T ss_pred CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCc
Q 030276 151 IKFP 154 (180)
Q Consensus 151 ikFP 154 (180)
++||
T Consensus 82 ~~~~ 85 (85)
T COG2157 82 LKFP 85 (85)
T ss_pred ccCC
Confidence 9998
No 5
>PRK00773 rplX 50S ribosomal protein LX; Validated
Probab=51.10 E-value=30 Score=25.20 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=50.8
Q ss_pred eeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEecc
Q 030276 8 FHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFE 70 (180)
Q Consensus 8 l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~e 70 (180)
++.|.|.|+-.... .+.-|.=-+=|+|+-.|-.+-.--|--.+++|.++=+|+.+.+|.+
T Consensus 2 ~k~f~V~g~~~~~~---~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~ 61 (76)
T PRK00773 2 MKIYRVKGTFLAGD---EWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISP 61 (76)
T ss_pred ceEEEEEEEEEcCC---CeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCH
Confidence 57899999966543 3455666677999999999999999999999999999999999954
No 6
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=44.14 E-value=33 Score=32.26 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHhhhhccCccEEEEEEeccCCCcee-eeeeeEEEEeccCccc
Q 030276 48 YLRKLKKVKKSNGQVLAINEIFEKNPTKI-KNYGIWLRYQSRTGYH 92 (180)
Q Consensus 48 fl~~l~K~Kk~~GeIv~~~~i~ek~p~~V-KNfGIwlrY~Srsgth 92 (180)
-++.|..+|+..+- =-|=+.--++|.-| =+||||++-+ |||.|
T Consensus 6 trr~L~~lkp~deN-k~CfeC~a~NPQWvSvsyGIfICLE-CSG~H 49 (386)
T KOG0704|consen 6 TRRVLLELKPQDEN-KKCFECGAPNPQWVSVSYGIFICLE-CSGKH 49 (386)
T ss_pred HHHHHHhcCccccC-CceeecCCCCCCeEeecccEEEEEe-cCCcc
Confidence 35677777774322 34556667899988 6899999987 45665
No 7
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=35.83 E-value=28 Score=31.01 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.3
Q ss_pred CccEEEEEEeccCCCceeeeeeeE
Q 030276 59 NGQVLAINEIFEKNPTKIKNYGIW 82 (180)
Q Consensus 59 ~GeIv~~~~i~ek~p~~VKNfGIw 82 (180)
=||||...-|-++++.+-|+||-.
T Consensus 36 fGeI~eavvitd~~t~rskGyGfV 59 (247)
T KOG0149|consen 36 FGEIVEAVVITDKNTGRSKGYGFV 59 (247)
T ss_pred hCceEEEEEEeccCCccccceeeE
Confidence 499999999999999999999964
No 8
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=34.90 E-value=35 Score=31.13 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=28.6
Q ss_pred HhhhhccCccEEEEEEeccCCCcee-eeeeeEEEEeccCccc
Q 030276 52 LKKVKKSNGQVLAINEIFEKNPTKI-KNYGIWLRYQSRTGYH 92 (180)
Q Consensus 52 l~K~Kk~~GeIv~~~~i~ek~p~~V-KNfGIwlrY~Srsgth 92 (180)
+.+..+...+=-.|-..--.+|..+ =||||+|+-| |+|.|
T Consensus 10 ~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~-CagvH 50 (319)
T COG5347 10 LLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCID-CAGVH 50 (319)
T ss_pred HHHHHhhccccCccccCCCCCCceEecccCeEEEee-cchhh
Confidence 3333444455566777777888887 7999999988 56777
No 9
>COG3500 Phage protein D [General function prediction only]
Probab=32.35 E-value=19 Score=33.38 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=32.8
Q ss_pred HHHHHHhhcccccCCCCceEEEeeeeCCCccCCccccccccCCCcCccc
Q 030276 108 EQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLV 156 (180)
Q Consensus 108 ~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~ 156 (180)
..+-+|||++|.... .|++.++.-|+|-|.-.|++.|.+-
T Consensus 122 sdi~~eIAa~hgLt~---------av~~t~~~~~~idQ~~ESD~~FL~r 161 (350)
T COG3500 122 SDIASEIAAEHGLTA---------AVSATQVAHPHIDQYYESDINFLLR 161 (350)
T ss_pred HHHHHHHHHHcCCcc---------ccccccccchhhhhcccccHHHHHH
Confidence 445589999999954 4566888899999999999999763
No 10
>PHA03066 Hypothetical protein; Provisional
Probab=31.17 E-value=29 Score=27.41 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCceeeeeeeEEEEeccCcccc
Q 030276 72 NPTKIKNYGIWLRYQSRTGYHN 93 (180)
Q Consensus 72 ~p~~VKNfGIwlrY~SrsgthN 93 (180)
+|...-.=-||+.|||++|+.-
T Consensus 60 ~~~~~~~~~v~~~Yds~~~~Vt 81 (110)
T PHA03066 60 DPETVISTQVNTYYNSSIGTVT 81 (110)
T ss_pred CCCCcccceEEEEEcCcCCeEE
Confidence 4555555679999999999853
No 11
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=27.03 E-value=71 Score=27.85 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=24.6
Q ss_pred ccEEEEEEeccCCCceeeeeeeEEEEecc
Q 030276 60 GQVLAINEIFEKNPTKIKNYGIWLRYQSR 88 (180)
Q Consensus 60 GeIv~~~~i~ek~p~~VKNfGIwlrY~Sr 88 (180)
||||.++-|.+++.++-|+|.- |+|.-.
T Consensus 60 Ge~vdinLiRDk~TGKSKGFaF-LcYEDQ 87 (219)
T KOG0126|consen 60 GEIVDINLIRDKKTGKSKGFAF-LCYEDQ 87 (219)
T ss_pred CceEEEEEEecCCCCcccceEE-EEecCc
Confidence 9999999999999999999974 888643
No 12
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=26.08 E-value=14 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=22.2
Q ss_pred HHHhhhhccCccEEEEEEeccCCCc
Q 030276 50 RKLKKVKKSNGQVLAINEIFEKNPT 74 (180)
Q Consensus 50 ~~l~K~Kk~~GeIv~~~~i~ek~p~ 74 (180)
.-..|+.++.||++.+.|+.|++|.
T Consensus 90 ~A~~KI~~aGGe~~tl~el~e~nPk 114 (122)
T COG1727 90 TAREKIEEAGGECLTLEELAERNPK 114 (122)
T ss_pred HHHHHHHHcCCeEeeHHHHHHHCCC
Confidence 3457999999999999999999995
No 13
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=25.38 E-value=29 Score=28.07 Aligned_cols=27 Identities=33% Similarity=0.748 Sum_probs=23.5
Q ss_pred cCccEEEEEEeccCCCceeee--ee-eEEE
Q 030276 58 SNGQVLAINEIFEKNPTKIKN--YG-IWLR 84 (180)
Q Consensus 58 ~~GeIv~~~~i~ek~p~~VKN--fG-Iwlr 84 (180)
-+|||+.+|+-.+++|..|.. || =||.
T Consensus 75 vsGeVvevN~~l~~~PeliN~dPyg~gWi~ 104 (131)
T COG0509 75 VSGEVVEVNEALVDSPELINSDPYGEGWIV 104 (131)
T ss_pred CceeEEEechhhhcChhhhccCCCCCceEE
Confidence 579999999999999999966 88 4865
No 14
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=23.37 E-value=49 Score=26.03 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=10.9
Q ss_pred eeEEEEeccCccc
Q 030276 80 GIWLRYQSRTGYH 92 (180)
Q Consensus 80 GIwlrY~Srsgth 92 (180)
-+|+.|||++|+.
T Consensus 67 ~v~l~Yds~~~~V 79 (109)
T PF06129_consen 67 QVILYYDSRSGTV 79 (109)
T ss_pred ceEEEEccCCCeE
Confidence 4789999999964
No 15
>COG5614 Bacteriophage head-tail adaptor [General function prediction only]
Probab=22.99 E-value=85 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=18.7
Q ss_pred hcccccCCCCceEEEeeeeCCCccCCcccc
Q 030276 115 ASRHRVRSPCIQIIKTATIPAKLCKRESTK 144 (180)
Q Consensus 115 gsRHrar~~sIqIikVeeI~~~e~rrp~vk 144 (180)
|+|-+... +|+.|.-+++.|+++..+-
T Consensus 74 ~~Ri~~~~---RilnI~~v~~pd~~r~~le 100 (109)
T COG5614 74 ASRLHVLS---RILNIVGVPDPDVTGGRLE 100 (109)
T ss_pred eeEEEEcC---eeEEEEecCChhHhCcEEE
Confidence 34444443 8888888888888876653
No 16
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=22.14 E-value=16 Score=23.71 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.4
Q ss_pred ccccceeccCChhhHH
Q 030276 92 HNMYKEYRDTTLNGAV 107 (180)
Q Consensus 92 hNmyKEyRdlt~~gAV 107 (180)
.+||.|||.+..++|-
T Consensus 4 ~~~Y~eFr~laled~~ 19 (39)
T smart00684 4 QNMYEEFRQLCLEDRK 19 (39)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4799999999888875
Done!