Query 030276
Match_columns 180
No_of_seqs 136 out of 248
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_S 60S ribosomal protein L 100.0 6E-101 2E-105 631.8 10.0 178 3-180 1-178 (178)
2 3u5e_S L18A, 60S ribosomal pro 100.0 8E-100 3E-104 622.6 13.0 170 6-180 2-172 (172)
3 4a18_X RPL18A, 60S ribosomal p 100.0 2.3E-99 8E-104 626.9 14.8 174 6-179 16-189 (189)
4 3j21_l 50S ribosomal protein L 100.0 2.6E-37 8.8E-42 224.5 6.9 74 75-148 2-75 (77)
5 4adx_G RPLX; ribosome, protein 100.0 6.8E-35 2.3E-39 212.2 6.4 74 75-148 4-77 (78)
6 4adx_G RPLX; ribosome, protein 56.5 16 0.00055 25.8 4.4 63 5-70 2-64 (78)
7 3j21_l 50S ribosomal protein L 43.3 27 0.00091 24.6 3.8 63 6-71 1-63 (77)
8 3ijm_A Uncharacterized restric 30.0 26 0.00088 27.9 2.1 19 74-92 113-133 (151)
9 2vy4_A U11/U12 small nuclear r 28.0 34 0.0012 20.7 2.0 27 31-57 7-33 (37)
10 2j8a_A Histone-lysine N-methyl 26.6 40 0.0014 26.3 2.6 38 54-92 25-62 (136)
11 2nr7_A Secretion activator pro 26.4 21 0.00072 29.2 1.1 42 71-112 26-73 (195)
12 2kfd_A PRE-mRNA-processing pro 25.7 32 0.0011 24.2 1.8 21 94-114 45-66 (69)
13 3dwv_A Glutathione peroxidase- 20.0 1.3E+02 0.0043 22.2 4.3 82 55-157 31-117 (187)
No 1
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_S 3izc_S 3izs_S
Probab=100.00 E-value=5.8e-101 Score=631.84 Aligned_cols=178 Identities=89% Similarity=1.398 Sum_probs=163.8
Q ss_pred cccceeeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccCCCceeeeeeeE
Q 030276 3 MVTFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIW 82 (180)
Q Consensus 3 ~~~~~l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek~p~~VKNfGIw 82 (180)
+++|.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.|||||||
T Consensus 1 ~~~~~l~eY~VvGr~lPt~k~p~p~lyrm~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIw 80 (178)
T 3iz5_S 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIW 80 (178)
T ss_dssp CCSCSCEEEEEEECCCCCSSSCCCCCBCCCEEESSHHHHHHHHHHHHHHTTCCCSTTCCEEEEECCCSSSSSCCCCCEEE
T ss_pred CCCceeEEEEEEEecCCCCCCCCCceEEEEeecCCeEEEeehHHHHHHHHhhhhhccceEEEEEEEccCCCceeEEeeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCC
Q 030276 83 LRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRP 162 (180)
Q Consensus 83 lrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~ 162 (180)
||||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+|||||++++.
T Consensus 81 lrYdSrsgtHNmyKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~ikQf~~skikFPl~hrv~~~ 160 (178)
T 3iz5_S 81 LRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRP 160 (178)
T ss_dssp EEEECSSSEEEEEEECCCSCHHHHHHHHHHHHHTTSCCCTTCCCEEEEECCCTTTCCSCHHHHHHHHHHSSSSSSSSSSS
T ss_pred EEEcccCCcccchhhhhhccHHHHHHHHHHHhhhhhcccccceEEEeEEEEcHHHcCCHHHHHhhcCCCccccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccCCceeecCCCCCC
Q 030276 163 PTRKLRTTYKASRPNLFM 180 (180)
Q Consensus 163 ~~~~~~~~F~~~rP~t~~ 180 (180)
+.++++++|+++||+||+
T Consensus 161 ~~~~~~~~F~~~rP~t~~ 178 (178)
T 3iz5_S 161 PTRKLKTTFKASRPNLFM 178 (178)
T ss_dssp GGGSSCC-----------
T ss_pred ccccccCeEeccCCccCC
Confidence 777889999999999985
No 2
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=100.00 E-value=7.8e-100 Score=622.57 Aligned_cols=170 Identities=49% Similarity=0.887 Sum_probs=166.7
Q ss_pred ceeeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccCCCceeeeeeeEEEE
Q 030276 6 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRY 85 (180)
Q Consensus 6 ~~l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY 85 (180)
+.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus 2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 81 (172)
T 3u5e_S 2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY 81 (172)
T ss_dssp CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeee-CCCccCCccccccccCCCcCcccccccCCCC
Q 030276 86 QSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATI-PAKLCKRESTKQFHNSKIKFPLVFRKVRPPT 164 (180)
Q Consensus 86 ~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI-~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~ 164 (180)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++|+|||||++++.
T Consensus 82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~-- 159 (172)
T 3u5e_S 82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS-- 159 (172)
T ss_dssp ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence 999999999999999999999999999999999999999999999999 89999999999999999999999999875
Q ss_pred cccCCceeecCCCCCC
Q 030276 165 RKLRTTYKASRPNLFM 180 (180)
Q Consensus 165 ~~~~~~F~~~rP~t~~ 180 (180)
+++|+++||+|||
T Consensus 160 ---~~~F~~~rP~t~~ 172 (172)
T 3u5e_S 160 ---TKTFSYKRPSTFY 172 (172)
T ss_dssp ---SSSCBSSCCCCCC
T ss_pred ---CCceeccCCCCCC
Confidence 4899999999996
No 3
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=100.00 E-value=2.3e-99 Score=626.90 Aligned_cols=174 Identities=50% Similarity=0.848 Sum_probs=171.1
Q ss_pred ceeeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccCCCceeeeeeeEEEE
Q 030276 6 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRY 85 (180)
Q Consensus 6 ~~l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY 85 (180)
+.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus 16 ~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 95 (189)
T 4a18_X 16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLKY 95 (189)
T ss_dssp CCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEECCSCTTSCEEEEEEEEE
T ss_pred cceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCc
Q 030276 86 QSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTR 165 (180)
Q Consensus 86 ~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~~ 165 (180)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+|||||++++.+++
T Consensus 96 dSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~skikFPl~hrv~~~~~~ 175 (189)
T 4a18_X 96 QSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEK 175 (189)
T ss_dssp ECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCSCCEEECCCCCCCCSSG
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhccCCccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred ccCCceeecCCCCC
Q 030276 166 KLRTTYKASRPNLF 179 (180)
Q Consensus 166 ~~~~~F~~~rP~t~ 179 (180)
+++++|+++||+||
T Consensus 176 ~~~~~F~~~rP~t~ 189 (189)
T 4a18_X 176 KYRTVYKATRPTTF 189 (189)
T ss_dssp GGCCSSCSSCCCCC
T ss_pred cccceeeccCCCCC
Confidence 78899999999997
No 4
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-37 Score=224.52 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=72.4
Q ss_pred eeeeeeeEEEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCcccccccc
Q 030276 75 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN 148 (180)
Q Consensus 75 ~VKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~ 148 (180)
.|||||||++|+||+|+|||||||||++++|||||||+||||||++|+++|||++|+||+++||+||+|+||+.
T Consensus 2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~ 75 (77)
T 3j21_l 2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL 75 (77)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=100.00 E-value=6.8e-35 Score=212.21 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=72.7
Q ss_pred eeeeeeeEEEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeCCCccCCcccccccc
Q 030276 75 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN 148 (180)
Q Consensus 75 ~VKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~ 148 (180)
.|||||||++|+|++|+|||||||||++++||||+||+||||||++++++|+|++|+||+++||+||+|+||+.
T Consensus 4 ~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~ 77 (78)
T 4adx_G 4 KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ 77 (78)
T ss_pred eeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999975
No 6
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=56.55 E-value=16 Score=25.80 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=53.3
Q ss_pred cceeeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEecc
Q 030276 5 TFRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFE 70 (180)
Q Consensus 5 ~~~l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~e 70 (180)
.|.++-|.|.|+-.... .+.-|.=-+=|.|+..|..+-.--|---+++|.++=.|+.+.+|.+
T Consensus 2 ~~~vK~f~V~g~~~~r~---~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~ 64 (78)
T 4adx_G 2 KMKTKIFRVKGKFLMGD---KLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISP 64 (78)
T ss_pred CceeEEEEEEEEEEcCC---CeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCH
Confidence 35789999999875442 2455667778999999999999999999999999999999999943
No 7
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.34 E-value=27 Score=24.59 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred ceeeEEEEEeecCCCCCCCCCceEEEEeecCCceeeeehhHHHHHHHhhhhccCccEEEEEEeccC
Q 030276 6 FRFHQYQVVGRALPTETDEHPKIYRMKLWATNEVRAKSKFWYYLRKLKKVKKSNGQVLAINEIFEK 71 (180)
Q Consensus 6 ~~l~eY~Vvgr~lPtek~p~P~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~ek 71 (180)
|.++.|.|.|+-.... . +.-|.=-+=|.|+-.|..+-.--|---+++|.++=.|+.+.+|.+.
T Consensus 1 m~vK~f~V~g~y~~r~-~--~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~ 63 (77)
T 3j21_l 1 MKVKVFRVHGYFEKNG-R--KFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPE 63 (77)
T ss_dssp CCCCEEEEEEEEEETT-E--EEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTT
T ss_pred CceEEEEEEEEEEcCC-C--eEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHH
Confidence 4688999999865432 2 2334445569999999999999999999999999999999999654
No 8
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=29.99 E-value=26 Score=27.88 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=16.2
Q ss_pred ceeeee--eeEEEEeccCccc
Q 030276 74 TKIKNY--GIWLRYQSRTGYH 92 (180)
Q Consensus 74 ~~VKNf--GIwlrY~Srsgth 92 (180)
+.|=|| |.|+||+...|..
T Consensus 113 GFVynYkt~~W~rYr~g~gg~ 133 (151)
T 3ijm_A 113 GFVFNYKTQQWLRYRLGDGGV 133 (151)
T ss_dssp EEEEETTTTEEEEEETTSTTC
T ss_pred eeeEeeccCceeEEEcCCCce
Confidence 578887 9999999988865
No 9
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=28.01 E-value=34 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=21.4
Q ss_pred EEeecCCceeeeehhHHHHHHHhhhhc
Q 030276 31 MKLWATNEVRAKSKFWYYLRKLKKVKK 57 (180)
Q Consensus 31 m~iFApn~vvAKSrFWyfl~~l~K~Kk 57 (180)
..=|.|||.|..++|++-|.+=++-+.
T Consensus 7 ~CPyd~~H~i~~~~l~~Hl~kC~~r~~ 33 (37)
T 2vy4_A 7 ICPYDSNHHMPKSSLAKHMASCRLRKM 33 (37)
T ss_dssp ECTTTSSCEECGGGHHHHHHHHHHHHC
T ss_pred ECCCCCCeEeCHHHHHHHHHHHhhhhh
Confidence 344789999999999999987665443
No 10
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=26.59 E-value=40 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.3
Q ss_pred hhhccCccEEEEEEeccCCCceeeeeeeEEEEeccCccc
Q 030276 54 KVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYH 92 (180)
Q Consensus 54 K~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY~Srsgth 92 (180)
-+=.+-|||.+|+-+.++....-++||- .+|.+++|..
T Consensus 25 ~~Fs~fGeV~~~~li~Dp~Tg~slGfgf-Vef~d~~g~~ 62 (136)
T 2j8a_A 25 NYFKKYGEISHFEAFNDPNSALPLHVYL-IKYASSDGKI 62 (136)
T ss_dssp HHHHTTSCCSEEEEEECTTTCCEEEEEE-EECC------
T ss_pred HHHHhcCCeEEEEEEecCCCCceeeEEE-EEECCCCCCc
Confidence 3334779999999999999999999996 7787766654
No 11
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=26.43 E-value=21 Score=29.16 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCCceeeeeeeEEEEeccCcc------ccccceeccCChhhHHHHHHH
Q 030276 71 KNPTKIKNYGIWLRYQSRTGY------HNMYKEYRDTTLNGAVEQMYN 112 (180)
Q Consensus 71 k~p~~VKNfGIwlrY~Srsgt------hNmyKEyRdlt~~gAV~q~Y~ 112 (180)
..|+-.=||||-.+.-++.|. +.-....++||.++|++.+|.
T Consensus 26 ~D~GG~T~~GIT~~t~~~~g~~~~~~g~~~~~dv~~Lt~~~a~~~Iy~ 73 (195)
T 2nr7_A 26 ADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLK 73 (195)
T ss_dssp GGGTCCEEECCCCCCTTTSSCBCTTSTTCCCSCGGGSCHHHHHHHTHH
T ss_pred CCCCCCcchhhhHHHHHhcCCccccCCCCCHHHHHhCCHHHHHHHHHH
Confidence 345667899999886555553 222344899999999997775
No 12
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=25.69 E-value=32 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.3
Q ss_pred ccceeccC-ChhhHHHHHHHHh
Q 030276 94 MYKEYRDT-TLNGAVEQMYNEM 114 (180)
Q Consensus 94 myKEyRdl-t~~gAV~q~Y~em 114 (180)
-|.||+|+ .+.....|+|+|+
T Consensus 45 ~~~Ey~~l~~E~~v~~qif~~F 66 (69)
T 2kfd_A 45 ESLEYKALGDEDNIRRQIFEDF 66 (69)
T ss_dssp TSTTSGGGTTSHHHHHHHHHHH
T ss_pred cCHHHHHhhccHHHHHHHHHhc
Confidence 47799999 4558889999986
No 13
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=20.04 E-value=1.3e+02 Score=22.25 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred hhccCccEEEEEEeccCCCceeeeeeeEEEEeccCccccccceeccCChhhHHHHHHHHhhcccccCCCCceEEEeeeeC
Q 030276 55 VKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIP 134 (180)
Q Consensus 55 ~Kk~~GeIv~~~~i~ek~p~~VKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~emgsRHrar~~sIqIikVeeI~ 134 (180)
++..+|+-++..+. ..++.-|-.++-|-- .+ ......+.++|.+++.+ .++|+.|..=.
T Consensus 31 l~d~~G~~~~l~~~-~Gk~vlv~F~atwC~-~C-------------~~~~p~l~~l~~~~~~~------~~~vi~is~d~ 89 (187)
T 3dwv_A 31 VLDADHKPYNLVQH-KGSPLLIYNVASKCG-YT-------------KGGYETATTLYNKYKSQ------GFTVLAFPSNQ 89 (187)
T ss_dssp CBBTTSCBCCGGGG-TTSCEEEEEECCBCS-CC-------------TTHHHHHHHHHHHHGGG------TCEEEEEEBCC
T ss_pred EEcCCCCEeeHHHh-CCCEEEEEEecCCCC-Cc-------------HHHHHHHHHHHHHhhhC------CeEEEEEECcc
Confidence 44567777766664 334555555555521 12 22345678888888654 58888875321
Q ss_pred ---CCccCCcccccccc-C-CCcCcccc
Q 030276 135 ---AKLCKRESTKQFHN-S-KIKFPLVF 157 (180)
Q Consensus 135 ---~~e~rrp~vkQf~~-~-kikFPl~~ 157 (180)
.+.-....+++|.. . ++.||+..
T Consensus 90 ~~~~e~~~~~~~~~~~~~~~~~~~p~~~ 117 (187)
T 3dwv_A 90 FGGQEPGNEEEIKEFVCTKFKAEFPIMA 117 (187)
T ss_dssp CSSCSSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred cCCCCCCCHHHHHHHHHhccCCCCceee
Confidence 12223466888887 4 89999884
Done!