Query 030277
Match_columns 180
No_of_seqs 133 out of 1115
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02600 enoyl-CoA hydratase 100.0 7.3E-47 1.6E-51 294.7 19.1 180 1-180 23-202 (251)
2 PRK06143 enoyl-CoA hydratase; 100.0 1.1E-46 2.5E-51 294.3 18.6 179 1-180 35-213 (256)
3 PRK09076 enoyl-CoA hydratase; 100.0 1.6E-46 3.4E-51 294.0 19.3 180 1-180 30-209 (258)
4 PRK05869 enoyl-CoA hydratase; 100.0 1.7E-46 3.7E-51 287.6 18.5 179 1-180 35-213 (222)
5 PRK07657 enoyl-CoA hydratase; 100.0 2.5E-46 5.5E-51 293.1 18.8 180 1-180 32-211 (260)
6 PRK05980 enoyl-CoA hydratase; 100.0 2.2E-46 4.9E-51 293.5 18.5 180 1-180 31-214 (260)
7 PRK05809 3-hydroxybutyryl-CoA 100.0 9.9E-46 2.2E-50 289.8 19.2 180 1-180 32-211 (260)
8 PRK08150 enoyl-CoA hydratase; 100.0 8.7E-46 1.9E-50 289.2 18.6 177 1-180 30-206 (255)
9 PRK09120 p-hydroxycinnamoyl Co 100.0 7.8E-46 1.7E-50 292.3 18.2 179 1-180 36-218 (275)
10 PRK07327 enoyl-CoA hydratase; 100.0 8.6E-46 1.9E-50 291.2 18.3 179 1-180 40-220 (268)
11 TIGR03210 badI 2-ketocyclohexa 100.0 8.5E-46 1.8E-50 289.5 18.1 179 1-180 30-208 (256)
12 PRK06144 enoyl-CoA hydratase; 100.0 1.2E-45 2.6E-50 289.5 18.4 180 1-180 36-217 (262)
13 PRK06127 enoyl-CoA hydratase; 100.0 1.7E-45 3.7E-50 289.6 18.8 180 1-180 39-220 (269)
14 PRK05862 enoyl-CoA hydratase; 100.0 1.8E-45 3.9E-50 287.9 18.5 177 1-180 32-208 (257)
15 PRK07658 enoyl-CoA hydratase; 100.0 1.8E-45 3.8E-50 288.0 18.3 179 1-180 29-208 (257)
16 PRK06190 enoyl-CoA hydratase; 100.0 1.6E-45 3.5E-50 287.9 18.0 177 1-180 32-208 (258)
17 TIGR01929 menB naphthoate synt 100.0 1.8E-45 4E-50 288.0 18.1 180 1-180 31-211 (259)
18 PRK09245 enoyl-CoA hydratase; 100.0 1.7E-45 3.8E-50 289.3 17.9 179 1-180 32-217 (266)
19 KOG1680 Enoyl-CoA hydratase [L 100.0 2.2E-46 4.8E-51 285.5 12.2 177 1-180 65-241 (290)
20 PRK06563 enoyl-CoA hydratase; 100.0 1.4E-45 3.1E-50 288.2 16.9 179 1-180 27-206 (255)
21 PRK06142 enoyl-CoA hydratase; 100.0 2.1E-45 4.6E-50 289.6 18.0 179 1-180 34-224 (272)
22 PRK06023 enoyl-CoA hydratase; 100.0 2E-45 4.2E-50 286.7 17.4 178 1-180 34-211 (251)
23 PRK09674 enoyl-CoA hydratase-i 100.0 2.8E-45 6.1E-50 286.5 18.3 177 1-180 30-206 (255)
24 PRK08138 enoyl-CoA hydratase; 100.0 3.3E-45 7.3E-50 286.9 18.5 177 1-180 36-212 (261)
25 PRK03580 carnitinyl-CoA dehydr 100.0 3.1E-45 6.7E-50 287.1 18.2 179 1-180 30-208 (261)
26 PRK07511 enoyl-CoA hydratase; 100.0 3.5E-45 7.5E-50 286.7 18.4 179 1-180 31-212 (260)
27 PLN02664 enoyl-CoA hydratase/d 100.0 3.4E-45 7.4E-50 288.8 18.4 179 1-180 36-226 (275)
28 TIGR02280 PaaB1 phenylacetate 100.0 5E-45 1.1E-49 285.2 18.3 178 1-180 27-207 (256)
29 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.9E-45 4.2E-50 285.9 15.6 179 1-180 26-204 (245)
30 PRK08139 enoyl-CoA hydratase; 100.0 9.2E-45 2E-49 285.0 19.0 178 1-180 39-217 (266)
31 PRK05870 enoyl-CoA hydratase; 100.0 3.8E-45 8.2E-50 284.8 16.6 177 1-180 31-207 (249)
32 PRK05864 enoyl-CoA hydratase; 100.0 7E-45 1.5E-49 287.1 18.4 179 1-180 38-224 (276)
33 PRK08140 enoyl-CoA hydratase; 100.0 8.7E-45 1.9E-49 284.8 18.6 178 1-180 32-213 (262)
34 PRK06494 enoyl-CoA hydratase; 100.0 7.4E-45 1.6E-49 284.7 18.1 177 1-180 32-208 (259)
35 PRK05995 enoyl-CoA hydratase; 100.0 6.7E-45 1.4E-49 285.4 17.9 178 1-180 32-212 (262)
36 PRK05674 gamma-carboxygeranoyl 100.0 4.1E-45 8.8E-50 286.9 16.5 178 1-180 34-214 (265)
37 PRK07260 enoyl-CoA hydratase; 100.0 7.3E-45 1.6E-49 284.2 17.7 179 1-180 30-212 (255)
38 PRK08258 enoyl-CoA hydratase; 100.0 1.1E-44 2.3E-49 286.3 18.6 179 1-180 45-228 (277)
39 PRK07396 dihydroxynaphthoic ac 100.0 9.5E-45 2.1E-49 285.9 18.2 179 1-180 41-221 (273)
40 PRK06688 enoyl-CoA hydratase; 100.0 7.6E-45 1.7E-49 284.7 17.4 178 1-180 33-210 (259)
41 PLN02888 enoyl-CoA hydratase 100.0 1.2E-44 2.5E-49 284.2 17.3 176 1-180 38-213 (265)
42 PRK08260 enoyl-CoA hydratase; 100.0 1.7E-44 3.6E-49 287.5 18.1 179 1-180 32-228 (296)
43 PRK11423 methylmalonyl-CoA dec 100.0 1.5E-44 3.2E-49 283.1 17.5 178 1-180 32-210 (261)
44 PRK07110 polyketide biosynthes 100.0 2E-44 4.4E-49 280.7 17.7 176 1-180 33-208 (249)
45 PRK07799 enoyl-CoA hydratase; 100.0 1.7E-44 3.7E-49 283.2 17.2 178 1-180 33-214 (263)
46 PRK07468 enoyl-CoA hydratase; 100.0 2.7E-44 5.8E-49 281.9 18.0 178 1-180 33-213 (262)
47 PRK05981 enoyl-CoA hydratase; 100.0 2.4E-44 5.2E-49 282.8 17.8 179 1-180 32-217 (266)
48 PRK08252 enoyl-CoA hydratase; 100.0 3E-44 6.4E-49 280.5 18.1 175 1-180 31-205 (254)
49 PRK08259 enoyl-CoA hydratase; 100.0 2.5E-44 5.3E-49 280.9 16.7 177 1-180 31-207 (254)
50 COG1024 CaiD Enoyl-CoA hydrata 100.0 4.5E-44 9.7E-49 280.0 17.6 178 1-180 33-212 (257)
51 PRK07659 enoyl-CoA hydratase; 100.0 4.1E-44 9E-49 280.6 17.1 177 1-180 34-211 (260)
52 PRK07938 enoyl-CoA hydratase; 100.0 5.5E-44 1.2E-48 278.2 17.7 176 1-180 29-205 (249)
53 PLN02921 naphthoate synthase 100.0 6.5E-44 1.4E-48 286.4 18.6 180 1-180 95-275 (327)
54 PLN03214 probable enoyl-CoA hy 100.0 4.8E-44 1E-48 282.3 17.6 180 1-180 39-222 (278)
55 PRK06495 enoyl-CoA hydratase; 100.0 7.6E-44 1.6E-48 278.7 17.6 176 1-180 31-208 (257)
56 PRK06210 enoyl-CoA hydratase; 100.0 6.9E-44 1.5E-48 281.1 16.7 179 1-180 34-223 (272)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 2.7E-43 5.8E-48 274.5 18.5 173 1-180 28-201 (251)
58 PRK08788 enoyl-CoA hydratase; 100.0 4.8E-43 1.1E-47 276.9 18.0 171 1-171 44-226 (287)
59 PRK06213 enoyl-CoA hydratase; 100.0 4.9E-43 1.1E-47 269.9 17.4 176 1-180 30-206 (229)
60 PRK07509 enoyl-CoA hydratase; 100.0 3.8E-43 8.3E-48 275.5 16.9 177 1-180 31-214 (262)
61 PRK08290 enoyl-CoA hydratase; 100.0 1E-42 2.2E-47 276.1 18.4 177 1-180 32-230 (288)
62 PRK08321 naphthoate synthase; 100.0 1.4E-42 3.1E-47 276.9 19.0 180 1-180 53-250 (302)
63 PRK05617 3-hydroxyisobutyryl-C 100.0 7.8E-43 1.7E-47 282.3 16.4 179 1-180 31-275 (342)
64 PRK07827 enoyl-CoA hydratase; 100.0 1.8E-42 3.8E-47 271.4 16.6 176 1-180 34-212 (260)
65 PRK07854 enoyl-CoA hydratase; 100.0 3.4E-42 7.4E-47 267.2 17.7 169 1-180 28-196 (243)
66 PRK06072 enoyl-CoA hydratase; 100.0 3.8E-42 8.1E-47 267.8 17.5 172 1-180 28-199 (248)
67 PRK08272 enoyl-CoA hydratase; 100.0 3.7E-42 8E-47 274.7 17.0 176 1-180 38-238 (302)
68 TIGR03200 dearomat_oah 6-oxocy 100.0 9.6E-42 2.1E-46 272.8 17.2 179 1-179 56-251 (360)
69 PLN02157 3-hydroxyisobutyryl-C 100.0 1.2E-41 2.5E-46 278.8 17.1 177 1-180 65-245 (401)
70 PRK12478 enoyl-CoA hydratase; 100.0 3.1E-41 6.7E-46 268.6 17.2 175 1-180 33-223 (298)
71 PLN02267 enoyl-CoA hydratase/i 100.0 4.6E-41 9.9E-46 260.2 17.6 172 1-173 27-204 (239)
72 PLN02874 3-hydroxyisobutyryl-C 100.0 2.3E-41 4.9E-46 276.9 16.7 157 1-159 39-197 (379)
73 PRK07112 polyketide biosynthes 100.0 3.5E-41 7.6E-46 263.3 16.6 174 1-180 32-207 (255)
74 KOG1679 Enoyl-CoA hydratase [L 100.0 1.3E-41 2.7E-46 250.7 11.6 180 1-180 59-242 (291)
75 KOG1681 Enoyl-CoA isomerase [L 100.0 5E-42 1.1E-46 254.7 6.4 179 1-180 50-242 (292)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 5.2E-40 1.1E-44 277.6 18.7 179 1-180 299-491 (546)
77 PRK08184 benzoyl-CoA-dihydrodi 100.0 4E-40 8.7E-45 279.0 17.9 180 1-180 303-495 (550)
78 PLN02988 3-hydroxyisobutyryl-C 100.0 4E-40 8.7E-45 268.8 16.6 176 1-179 37-216 (381)
79 PRK11730 fadB multifunctional 100.0 9.7E-40 2.1E-44 285.6 17.8 170 1-171 35-207 (715)
80 cd06558 crotonase-like Crotona 100.0 2.4E-39 5.3E-44 243.4 17.0 167 1-168 27-195 (195)
81 PLN02851 3-hydroxyisobutyryl-C 100.0 8.8E-39 1.9E-43 261.9 17.5 173 1-176 70-246 (407)
82 PRK11154 fadJ multifunctional 100.0 9.4E-39 2E-43 279.3 18.3 167 1-167 35-204 (708)
83 TIGR02440 FadJ fatty oxidation 100.0 2.7E-38 5.9E-43 275.9 19.0 177 1-177 30-222 (699)
84 TIGR02437 FadB fatty oxidation 100.0 2.1E-38 4.6E-43 276.8 17.5 169 1-170 35-206 (714)
85 TIGR03222 benzo_boxC benzoyl-C 100.0 5.1E-38 1.1E-42 265.5 16.8 174 1-174 49-232 (546)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.3E-37 2.9E-42 263.7 16.9 174 1-174 53-236 (550)
87 KOG0016 Enoyl-CoA hydratase/is 100.0 2.6E-37 5.7E-42 233.7 15.6 179 1-180 36-221 (266)
88 TIGR02441 fa_ox_alpha_mit fatt 100.0 4.6E-37 1E-41 269.0 18.1 169 1-170 42-227 (737)
89 COG0447 MenB Dihydroxynaphthoi 100.0 2.3E-34 4.9E-39 212.6 9.8 177 2-180 48-230 (282)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 2.9E-32 6.3E-37 199.9 11.8 178 1-180 60-238 (287)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 5.1E-30 1.1E-34 201.7 12.0 175 1-176 66-244 (401)
92 cd07014 S49_SppA Signal peptid 99.9 7.2E-24 1.6E-28 157.3 11.6 142 2-160 24-175 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.9 8.8E-22 1.9E-26 147.3 12.6 137 3-160 16-172 (187)
94 cd07019 S49_SppA_1 Signal pept 99.8 4.9E-19 1.1E-23 134.8 11.1 140 2-159 23-208 (211)
95 cd00394 Clp_protease_like Case 99.7 8.4E-17 1.8E-21 117.5 12.2 131 1-151 12-161 (161)
96 TIGR00705 SppA_67K signal pept 99.7 3.5E-17 7.6E-22 140.8 11.5 153 3-176 332-530 (584)
97 cd07023 S49_Sppa_N_C Signal pe 99.7 1.2E-16 2.5E-21 121.5 12.4 140 1-158 18-204 (208)
98 cd07022 S49_Sppa_36K_type Sign 99.7 1.4E-16 3.1E-21 121.5 12.8 138 1-158 26-210 (214)
99 cd07016 S14_ClpP_1 Caseinolyti 99.7 6.6E-16 1.4E-20 112.7 13.3 127 2-151 17-160 (160)
100 TIGR00706 SppA_dom signal pept 99.7 1.6E-15 3.4E-20 115.2 13.4 141 2-163 15-204 (207)
101 cd07018 S49_SppA_67K_type Sign 99.6 6E-15 1.3E-19 113.2 11.1 141 1-160 30-219 (222)
102 cd07021 Clp_protease_NfeD_like 99.5 7.9E-13 1.7E-17 97.9 13.0 133 3-157 16-175 (178)
103 PRK10949 protease 4; Provision 99.3 4.6E-11 9.9E-16 103.5 13.0 142 3-162 350-537 (618)
104 cd07015 Clp_protease_NfeD Nodu 99.2 2E-10 4.3E-15 84.5 12.3 131 3-154 16-165 (172)
105 cd07013 S14_ClpP Caseinolytic 99.2 2.7E-10 5.9E-15 83.3 11.3 130 2-151 14-162 (162)
106 COG0616 SppA Periplasmic serin 99.1 9.6E-10 2.1E-14 88.6 11.6 139 3-163 83-271 (317)
107 KOG1683 Hydroxyacyl-CoA dehydr 99.0 3.1E-11 6.6E-16 96.7 -0.8 170 2-171 84-259 (380)
108 cd07017 S14_ClpP_2 Caseinolyti 99.0 5.2E-09 1.1E-13 77.2 9.9 130 2-151 23-171 (171)
109 PRK11778 putative inner membra 99.0 1.3E-08 2.9E-13 81.8 11.9 104 59-162 147-294 (330)
110 PRK12553 ATP-dependent Clp pro 99.0 1.4E-08 3.1E-13 77.0 11.4 131 2-154 49-202 (207)
111 PRK00277 clpP ATP-dependent Cl 98.9 2.9E-08 6.2E-13 75.0 12.2 98 57-154 80-196 (200)
112 PRK14512 ATP-dependent Clp pro 98.9 4.3E-08 9.3E-13 73.8 11.6 99 56-154 71-188 (197)
113 PF00574 CLP_protease: Clp pro 98.9 7.5E-09 1.6E-13 77.0 7.1 99 56-154 64-181 (182)
114 CHL00028 clpP ATP-dependent Cl 98.8 9.2E-08 2E-12 72.1 11.4 100 56-155 78-197 (200)
115 TIGR00705 SppA_67K signal pept 98.8 2E-07 4.3E-12 80.9 13.9 84 2-102 78-161 (584)
116 PRK12319 acetyl-CoA carboxylas 98.8 1.4E-07 3.1E-12 73.6 11.7 116 52-177 122-246 (256)
117 CHL00198 accA acetyl-CoA carbo 98.8 6.3E-07 1.4E-11 71.7 15.5 92 52-153 178-269 (322)
118 TIGR00493 clpP ATP-dependent C 98.8 2E-07 4.4E-12 69.9 12.1 97 57-153 75-190 (191)
119 PF01343 Peptidase_S49: Peptid 98.7 2.4E-08 5.1E-13 72.4 5.3 102 62-163 2-149 (154)
120 PRK12551 ATP-dependent Clp pro 98.7 5E-07 1.1E-11 67.9 11.9 99 57-155 74-191 (196)
121 PRK14514 ATP-dependent Clp pro 98.7 5.9E-07 1.3E-11 68.6 12.1 98 57-154 103-219 (221)
122 PLN03230 acetyl-coenzyme A car 98.7 4.7E-07 1E-11 74.4 11.7 92 52-153 245-336 (431)
123 TIGR00513 accA acetyl-CoA carb 98.6 5.6E-07 1.2E-11 72.0 11.7 116 52-177 175-303 (316)
124 PRK10949 protease 4; Provision 98.6 1.1E-06 2.3E-11 76.6 14.1 85 2-103 97-181 (618)
125 PRK14513 ATP-dependent Clp pro 98.6 1.2E-06 2.6E-11 66.1 12.1 100 56-155 75-193 (201)
126 PLN03229 acetyl-coenzyme A car 98.6 1E-06 2.2E-11 76.7 12.3 92 52-153 266-357 (762)
127 PRK05724 acetyl-CoA carboxylas 98.6 1.4E-06 3E-11 69.8 12.2 92 52-153 175-266 (319)
128 PF01972 SDH_sah: Serine dehyd 98.5 3.7E-06 7.9E-11 65.6 12.4 59 57-115 109-167 (285)
129 COG0740 ClpP Protease subunit 98.4 7.2E-06 1.6E-10 61.4 11.0 100 57-156 76-194 (200)
130 PRK12552 ATP-dependent Clp pro 98.3 1.1E-05 2.4E-10 61.6 11.5 96 57-154 98-214 (222)
131 TIGR03134 malonate_gamma malon 98.3 1E-05 2.3E-10 62.5 10.3 97 51-156 89-191 (238)
132 PRK05654 acetyl-CoA carboxylas 98.3 8.6E-05 1.9E-09 59.2 15.2 140 4-173 144-285 (292)
133 TIGR00515 accD acetyl-CoA carb 98.2 5.9E-05 1.3E-09 59.9 13.5 138 4-171 143-282 (285)
134 COG1030 NfeD Membrane-bound se 98.2 2E-05 4.4E-10 65.1 11.2 136 2-158 42-193 (436)
135 TIGR03133 malonate_beta malona 98.2 8.6E-05 1.9E-09 58.5 13.1 82 62-155 133-218 (274)
136 COG0825 AccA Acetyl-CoA carbox 98.0 4.3E-05 9.3E-10 59.9 7.9 92 53-154 175-266 (317)
137 CHL00174 accD acetyl-CoA carbo 97.9 0.00072 1.6E-08 53.8 13.7 88 64-168 205-293 (296)
138 PRK07189 malonate decarboxylas 97.9 0.00059 1.3E-08 54.5 12.8 41 62-103 142-184 (301)
139 COG0777 AccD Acetyl-CoA carbox 97.9 0.00057 1.2E-08 53.3 12.3 140 4-173 145-286 (294)
140 PF01039 Carboxyl_trans: Carbo 97.8 0.0014 3E-08 56.1 14.6 87 57-166 123-218 (493)
141 TIGR01117 mmdA methylmalonyl-C 97.8 0.0017 3.6E-08 55.9 14.9 150 4-171 338-498 (512)
142 TIGR01117 mmdA methylmalonyl-C 97.3 0.0055 1.2E-07 52.7 12.3 83 65-169 153-244 (512)
143 PLN02820 3-methylcrotonyl-CoA 97.3 0.015 3.2E-07 50.7 14.6 86 61-168 200-294 (569)
144 PLN02820 3-methylcrotonyl-CoA 97.0 0.01 2.2E-07 51.6 10.8 116 49-171 422-557 (569)
145 PF01039 Carboxyl_trans: Carbo 96.6 0.004 8.6E-08 53.4 5.7 117 49-171 350-481 (493)
146 COG4799 Acetyl-CoA carboxylase 96.3 0.043 9.4E-07 47.0 9.7 83 62-170 160-250 (526)
147 KOG0840 ATP-dependent Clp prot 94.8 0.4 8.6E-06 37.4 9.1 94 58-153 142-256 (275)
148 COG4799 Acetyl-CoA carboxylase 94.0 0.19 4E-06 43.3 6.4 120 46-172 377-512 (526)
149 PF02601 Exonuc_VII_L: Exonucl 91.8 0.26 5.6E-06 39.8 4.2 76 3-97 58-136 (319)
150 TIGR00237 xseA exodeoxyribonuc 91.8 0.35 7.5E-06 40.9 5.0 82 3-103 173-256 (432)
151 PRK00286 xseA exodeoxyribonucl 88.7 0.83 1.8E-05 38.6 4.8 74 3-97 179-253 (438)
152 PF06833 MdcE: Malonate decarb 88.2 4.4 9.5E-05 31.4 8.0 94 52-154 91-187 (234)
153 COG0074 SucD Succinyl-CoA synt 88.1 1.8 4E-05 34.4 6.0 54 4-78 187-240 (293)
154 KOG0540 3-Methylcrotonyl-CoA c 86.9 4.9 0.00011 34.1 8.0 98 52-162 408-515 (536)
155 PTZ00187 succinyl-CoA syntheta 85.6 3.5 7.6E-05 33.5 6.5 53 5-78 212-264 (317)
156 PF13607 Succ_CoA_lig: Succiny 84.8 3.6 7.7E-05 29.2 5.6 53 4-78 41-93 (138)
157 COG1570 XseA Exonuclease VII, 83.7 2.8 6.1E-05 35.4 5.3 75 3-96 179-253 (440)
158 smart00250 PLEC Plectin repeat 83.2 1 2.2E-05 24.3 1.8 18 133-150 18-35 (38)
159 PLN02522 ATP citrate (pro-S)-l 81.3 6.2 0.00013 35.0 6.8 52 5-78 210-262 (608)
160 PF00549 Ligase_CoA: CoA-ligas 80.9 3.6 7.7E-05 29.8 4.4 57 4-79 60-121 (153)
161 PF00681 Plectin: Plectin repe 76.2 0.86 1.9E-05 25.6 0.1 20 132-151 17-36 (45)
162 PRK06091 membrane protein FdrA 66.1 25 0.00054 30.9 6.6 52 5-78 240-291 (555)
163 PLN00125 Succinyl-CoA ligase [ 65.7 20 0.00044 28.9 5.7 53 5-78 193-245 (300)
164 PF06258 Mito_fiss_Elm1: Mitoc 65.2 73 0.0016 25.8 8.9 38 67-104 208-245 (311)
165 PF12268 DUF3612: Protein of u 65.2 6.6 0.00014 28.2 2.5 38 16-54 78-115 (178)
166 PF01990 ATP-synt_F: ATP synth 61.0 27 0.00058 22.7 4.8 51 3-77 28-79 (95)
167 PRK05665 amidotransferase; Pro 61.0 12 0.00027 29.0 3.6 26 51-76 76-101 (240)
168 TIGR02717 AcCoA-syn-alpha acet 60.3 16 0.00034 31.1 4.4 52 5-78 191-242 (447)
169 TIGR01019 sucCoAalpha succinyl 57.5 39 0.00084 27.1 5.9 23 4-26 185-207 (286)
170 PRK02228 V-type ATP synthase s 55.7 58 0.0012 21.5 6.7 49 3-75 30-79 (100)
171 PRK05368 homoserine O-succinyl 55.0 20 0.00043 29.0 4.0 66 6-89 89-154 (302)
172 KOG1255 Succinyl-CoA synthetas 52.6 61 0.0013 25.5 6.0 56 4-77 218-273 (329)
173 PRK13505 formate--tetrahydrofo 52.3 31 0.00066 30.3 4.8 70 15-85 322-391 (557)
174 KOG3179 Predicted glutamine sy 51.1 32 0.00069 26.3 4.2 46 17-77 59-104 (245)
175 PRK05678 succinyl-CoA syntheta 50.5 56 0.0012 26.2 5.8 23 4-26 187-209 (291)
176 cd01741 GATase1_1 Subgroup of 42.3 38 0.00083 24.7 3.6 24 53-76 68-91 (188)
177 PRK06490 glutamine amidotransf 42.2 43 0.00094 25.9 4.0 25 52-76 72-96 (239)
178 KOG4230 C1-tetrahydrofolate sy 40.6 75 0.0016 28.4 5.4 52 6-73 353-404 (935)
179 PF04439 Adenyl_transf: Strept 40.6 26 0.00057 27.9 2.6 22 5-26 8-29 (282)
180 COG3581 Uncharacterized protei 40.3 1.1E+02 0.0024 25.7 6.1 57 1-73 55-111 (420)
181 PRK09065 glutamine amidotransf 39.7 41 0.00089 25.9 3.5 25 52-76 74-98 (237)
182 COG4032 Predicted thiamine-pyr 39.0 36 0.00077 24.5 2.7 38 2-39 27-65 (172)
183 PF01268 FTHFS: Formate--tetra 37.5 34 0.00073 30.1 2.9 76 14-90 320-395 (557)
184 KOG3040 Predicted sugar phosph 36.1 1.3E+02 0.0029 23.2 5.5 43 52-94 124-180 (262)
185 COG0793 Prc Periplasmic protea 35.9 7.8 0.00017 32.6 -1.1 81 3-84 219-305 (406)
186 cd01745 GATase1_2 Subgroup of 35.0 66 0.0014 23.7 3.8 21 56-76 90-110 (189)
187 PF00763 THF_DHG_CYH: Tetrahyd 34.4 46 0.001 22.6 2.7 24 3-26 73-96 (117)
188 cd00477 FTHFS Formyltetrahydro 34.3 1.1E+02 0.0023 26.9 5.3 75 15-90 305-380 (524)
189 PTZ00386 formyl tetrahydrofola 32.7 93 0.002 27.7 4.8 56 34-89 405-460 (625)
190 COG0412 Dienelactone hydrolase 32.6 85 0.0018 24.1 4.3 38 52-90 93-133 (236)
191 PRK14046 malate--CoA ligase su 32.3 3E+02 0.0066 23.0 8.3 68 3-87 296-363 (392)
192 TIGR00674 dapA dihydrodipicoli 31.7 2.6E+02 0.0056 22.0 8.0 83 3-100 19-106 (285)
193 KOG0333 U5 snRNP-like RNA heli 31.6 39 0.00084 29.7 2.3 35 65-99 349-384 (673)
194 PRK02261 methylaspartate mutas 31.3 68 0.0015 22.5 3.2 30 140-170 106-135 (137)
195 PRK13507 formate--tetrahydrofo 31.1 1.3E+02 0.0028 26.7 5.3 44 48-91 383-426 (587)
196 smart00870 Asparaginase Aspara 30.1 2.2E+02 0.0047 23.1 6.4 24 3-26 63-87 (323)
197 PRK13506 formate--tetrahydrofo 29.4 1.9E+02 0.0041 25.7 6.0 76 15-90 335-417 (578)
198 cd03131 GATase1_HTS Type 1 glu 29.3 85 0.0018 23.2 3.6 69 15-100 60-129 (175)
199 PF00195 Chal_sti_synt_N: Chal 29.2 78 0.0017 24.5 3.4 76 3-98 106-183 (226)
200 TIGR00520 asnASE_II L-asparagi 28.9 2.2E+02 0.0047 23.5 6.2 24 3-26 91-115 (349)
201 PRK14053 methyltransferase; Pr 28.5 53 0.0012 24.5 2.3 37 5-41 52-88 (194)
202 PRK07567 glutamine amidotransf 28.3 1.7E+02 0.0036 22.7 5.2 23 54-76 81-103 (242)
203 TIGR01101 V_ATP_synt_F vacuola 28.2 2E+02 0.0043 19.7 5.9 50 3-77 46-95 (115)
204 PRK13317 pantothenate kinase; 28.0 3.1E+02 0.0067 21.8 7.8 24 9-32 39-62 (277)
205 PF04208 MtrA: Tetrahydrometha 27.6 47 0.001 24.5 1.9 31 5-35 55-85 (176)
206 PRK01395 V-type ATP synthase s 27.4 1.9E+02 0.0042 19.2 6.0 50 3-77 32-81 (104)
207 PF02358 Trehalose_PPase: Treh 27.3 90 0.0019 23.7 3.6 26 55-80 24-49 (235)
208 PRK07053 glutamine amidotransf 27.1 69 0.0015 24.7 2.9 24 53-76 70-93 (234)
209 PRK15098 beta-D-glucoside gluc 26.7 2E+02 0.0043 26.5 6.1 76 5-92 492-568 (765)
210 COG1618 Predicted nucleotide k 26.6 91 0.002 23.1 3.2 25 52-76 116-140 (179)
211 COG1509 KamA Lysine 2,3-aminom 26.6 64 0.0014 26.8 2.7 25 2-26 143-167 (369)
212 PF05677 DUF818: Chlamydia CHL 26.5 1.8E+02 0.0039 24.2 5.2 70 9-89 163-235 (365)
213 PRK13525 glutamine amidotransf 26.0 85 0.0019 23.2 3.1 22 55-76 61-82 (189)
214 PRK04183 glutamyl-tRNA(Gln) am 25.8 2.3E+02 0.0051 24.0 6.0 25 2-26 138-162 (419)
215 PF08338 DUF1731: Domain of un 25.7 15 0.00032 21.0 -0.8 32 118-151 6-37 (48)
216 TIGR01111 mtrA N5-methyltetrah 25.4 63 0.0014 25.0 2.3 37 5-41 59-95 (238)
217 PF01738 DLH: Dienelactone hyd 25.2 1.4E+02 0.003 22.1 4.2 37 53-90 80-119 (218)
218 PRK03957 V-type ATP synthase s 25.1 1E+02 0.0022 20.4 3.0 24 3-26 30-53 (100)
219 PLN03037 lipase class 3 family 24.8 83 0.0018 27.5 3.1 23 71-93 320-342 (525)
220 PRK08250 glutamine amidotransf 24.4 1.4E+02 0.0031 22.9 4.2 21 56-76 74-94 (235)
221 PRK00964 tetrahydromethanopter 24.1 68 0.0015 24.7 2.3 37 5-41 59-95 (225)
222 KOG1151 Tousled-like protein k 24.1 1.5E+02 0.0032 25.9 4.4 49 32-80 550-611 (775)
223 COG0252 AnsB L-asparaginase/ar 24.0 3.1E+02 0.0068 22.7 6.3 47 2-71 85-132 (351)
224 smart00463 SMR Small MutS-rela 23.9 1.7E+02 0.0036 18.0 3.8 26 2-27 15-41 (80)
225 PRK11366 puuD gamma-glutamyl-g 23.5 1.3E+02 0.0029 23.4 3.9 21 56-76 97-117 (254)
226 COG2101 SPT15 TATA-box binding 23.4 2.5E+02 0.0055 20.9 5.0 20 14-35 50-69 (185)
227 PTZ00293 thymidine kinase; Pro 23.4 2.4E+02 0.0052 21.5 5.1 40 53-92 90-134 (211)
228 PRK01175 phosphoribosylformylg 23.4 1.2E+02 0.0026 23.9 3.6 20 57-76 80-99 (261)
229 PLN02759 Formate--tetrahydrofo 23.3 1.7E+02 0.0037 26.2 4.7 38 52-89 436-473 (637)
230 cd00844 MPP_Dbr1_N Dbr1 RNA la 23.2 2.1E+02 0.0046 22.5 5.0 70 3-77 12-83 (262)
231 PF08436 DXP_redisom_C: 1-deox 23.0 88 0.0019 20.2 2.3 16 16-31 21-36 (84)
232 PRK13143 hisH imidazole glycer 22.6 1.9E+02 0.0042 21.4 4.6 25 52-76 57-81 (200)
233 PRK11096 ansB L-asparaginase I 22.6 3E+02 0.0064 22.8 5.9 21 3-25 88-108 (347)
234 COG3001 Uncharacterized protei 22.0 78 0.0017 25.1 2.2 59 54-113 171-229 (286)
235 TIGR00519 asnASE_I L-asparagin 21.9 3E+02 0.0065 22.5 5.8 23 3-26 65-87 (336)
236 TIGR01501 MthylAspMutase methy 21.8 1.2E+02 0.0025 21.4 3.0 26 141-167 105-130 (134)
237 KOG3997 Major apurinic/apyrimi 21.5 1.2E+02 0.0027 23.5 3.2 48 2-57 158-205 (281)
238 PF11524 SeleniumBinding: Sele 21.4 55 0.0012 20.7 1.1 35 132-166 10-45 (81)
239 TIGR02153 gatD_arch glutamyl-t 21.1 3.2E+02 0.007 23.1 5.9 25 2-26 125-149 (404)
240 PRK14558 pyrH uridylate kinase 20.9 3.2E+02 0.007 20.7 5.6 33 2-37 25-57 (231)
241 COG4555 NatA ABC-type Na+ tran 20.5 4.2E+02 0.009 20.6 6.0 61 14-98 150-210 (245)
242 TIGR03822 AblA_like_2 lysine-2 20.1 1.4E+02 0.003 24.2 3.5 24 3-26 122-145 (321)
243 COG0329 DapA Dihydrodipicolina 20.1 4.1E+02 0.0089 21.3 6.1 70 3-87 25-94 (299)
No 1
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=7.3e-47 Score=294.73 Aligned_cols=180 Identities=72% Similarity=1.126 Sum_probs=166.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..........+...++.++.++.++||||||+|||+|+|+
T Consensus 23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG 102 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence 67899999999999999999999998678999999999876543333444556667788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~ 182 (251)
T PLN02600 103 GLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEK 182 (251)
T ss_pred hHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 183 a~~~a~~la~~~p~a~~~~K 202 (251)
T PLN02600 183 ALELAQEINQKGPLAIKMAK 202 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 2
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=294.35 Aligned_cols=179 Identities=30% Similarity=0.525 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++...+......+...++.++..+.++||||||+|||+|+|+
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 57899999999999999999999998557999999999876543333344556667888999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|+ |+.++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (256)
T PRK06143 115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAA 193 (256)
T ss_pred hHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHH
Confidence 9999999999999999999999999998 778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (256)
T PRK06143 194 VERLAASLAGCGPQALRQQK 213 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
No 3
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-46 Score=293.98 Aligned_cols=180 Identities=36% Similarity=0.534 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++...+......+...+.+++.++.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 57899999999999999999999998558999999999875433322233445566788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (258)
T PRK09076 110 GLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREA 189 (258)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 190 a~~~a~~l~~~~~~a~~~~K 209 (258)
T PRK09076 190 ALALAQKVANQSPSAVAACK 209 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 4
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.7e-46 Score=287.57 Aligned_cols=179 Identities=28% Similarity=0.449 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++............+.+++++.++.++||||||+|||+|+|+
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA 113 (222)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence 57899999999999999999999998 78999999999875543322223344567788999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+++.++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (222)
T PRK05869 114 GLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA 193 (222)
T ss_pred HHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 194 a~~~a~~ia~~~~~a~~~~K 213 (222)
T PRK05869 194 AAAWARRFLDGPPHALAAAK 213 (222)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
No 5
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=293.14 Aligned_cols=180 Identities=49% Similarity=0.802 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++..........+...+++++..+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG 111 (260)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence 67899999999999999999999998557999999999875433333444455667888899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK07657 112 GLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07657 192 AIEIAEKIASNGPIAVRQAK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
No 6
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-46 Score=293.46 Aligned_cols=180 Identities=33% Similarity=0.512 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++.... ......+.+.++.++.++.++||||||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998558999999999875421 11233445555678888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|+++
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 191 l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 191 LLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999988765
No 7
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=9.9e-46 Score=289.81 Aligned_cols=180 Identities=37% Similarity=0.598 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+....++++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 57899999999999999999999998548999999999876543333333444556788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK05809 112 GCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEE 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 192 a~~~a~~la~~~~~a~~~~K 211 (260)
T PRK05809 192 AKALANKIAANAPIAVKLCK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 8
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-46 Score=289.21 Aligned_cols=177 Identities=34% Similarity=0.580 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++ +++++|||||. |++||+|.|++++...+..........++.++.++.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T PRK08150 30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG 106 (255)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence 5789999999987 79999999998 78999999999876433322233345567788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (255)
T PRK08150 107 GLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDK 186 (255)
T ss_pred HHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++++|.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK08150 187 AMELARRIAQNAPLTNFAVL 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998776
No 9
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=7.8e-46 Score=292.27 Aligned_cols=179 Identities=29% Similarity=0.432 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh---h-HHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... . ........++.++..+.++||||||+|||+
T Consensus 36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998 789999999998643211 1 122223344667888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++|||++++|+++
T Consensus 115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred EechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++++.+++++|+++||.+++.+|
T Consensus 195 l~~~a~~~a~~la~~~p~a~~~~K 218 (275)
T PRK09120 195 LRARTRELAAKLLEKNPVVLRAAK 218 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999876
No 10
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-46 Score=291.20 Aligned_cols=179 Identities=28% Similarity=0.355 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh--hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... .........+.+++..+.++||||||+|||+|+
T Consensus 40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 57899999999999999999999998 689999999998754221 222333445567888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+.++++++++++|..++++++++|++++|+||+++|||++++|++++.
T Consensus 119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (268)
T PRK07327 119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELL 198 (268)
T ss_pred ehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 199 ~~a~~~a~~la~~~~~a~~~~K 220 (268)
T PRK07327 199 PKALEVAERLAAGSQTAIRWTK 220 (268)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999876
No 11
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=8.5e-46 Score=289.48 Aligned_cols=179 Identities=27% Similarity=0.401 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++...... .......++.++..+.++||||||+|||+|+|+
T Consensus 30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (256)
T TIGR03210 30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDG-RGTIGLPMEELHSAIRDVPKPVIARVQGYAIGG 108 (256)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccc-hhHHHHHHHHHHHHHHhCCCCEEEEECCEEehh
Confidence 6789999999999999999999999855899999999987432111 111223456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (256)
T TIGR03210 109 GNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAE 188 (256)
T ss_pred hHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHH
Confidence 99999999999999999999999999999888788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~ia~~~~~a~~~~K 208 (256)
T TIGR03210 189 VQKWCDEIVEKSPTAIAIAK 208 (256)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998877
No 12
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-45 Score=289.52 Aligned_cols=180 Identities=33% Similarity=0.501 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..... .....+.+.++.++.++.++||||||+|||+|+|
T Consensus 36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 115 (262)
T PRK06144 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG 115 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence 578999999999999999999999985589999999998754322 2222334456778888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCcccc-ccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~-~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
+|++|+++||+||++++++|++||.+ +|++|+++.++++++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 195 (262)
T PRK06144 116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALD 195 (262)
T ss_pred hHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~i~~~~~~a~~~~K 217 (262)
T PRK06144 196 ARADALAELLAAHAPLTLRATK 217 (262)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
No 13
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=289.65 Aligned_cols=180 Identities=29% Similarity=0.500 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++.... ......+....+.++..+..+||||||+|||+|+
T Consensus 39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 67899999999999999999999998558999999999875421 1222334455567788899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.
T Consensus 119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (269)
T PRK06127 119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198 (269)
T ss_pred cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 199 ~~a~~~a~~l~~~~~~a~~~~K 220 (269)
T PRK06127 199 TALADYAATIAGNAPLTLRAAK 220 (269)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
No 14
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-45 Score=287.87 Aligned_cols=177 Identities=34% Similarity=0.547 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+..+ .+...+..++.++.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kpvIaav~G~a~Gg 108 (257)
T PRK05862 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFMD--VYKGDYITNWEKVARIRKPVIAAVAGYALGG 108 (257)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchhH--HHHHHHHHHHHHHHhCCCCEEEEEccEEeHH
Confidence 57899999999999999999999998 78999999999875432211 1223445577889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (257)
T PRK05862 109 GCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDE 188 (257)
T ss_pred HHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 189 a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK05862 189 ALAAATTIASFSLPAVMMAK 208 (257)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 15
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-45 Score=287.98 Aligned_cols=179 Identities=38% Similarity=0.618 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++..... .....+....+.++.++.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G 107 (257)
T PRK07658 29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG 107 (257)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence 57899999999999999999999998 789999999998754322 2233344556778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.+
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 187 (257)
T PRK07658 108 GGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLD 187 (257)
T ss_pred HHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 188 ~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK07658 188 DAKKLAKKIAGKSPATTRAVL 208 (257)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
No 16
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-45 Score=287.90 Aligned_cols=177 Identities=33% Similarity=0.467 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++......... ...+++++..+.++|||+||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~--~~~~~~~~~~i~~~~kPvIAaV~G~a~Gg 108 (258)
T PRK06190 32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA--QDALPNPSPAWPAMRKPVIGAINGAAVTG 108 (258)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH--HHHHHHHHHHHHhCCCCEEEEECCEeecH
Confidence 67899999999999999999999998 7999999999987543222111 23456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (258)
T PRK06190 109 GLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPR 188 (258)
T ss_pred HHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (258)
T PRK06190 189 ARRLAASIAGNNPAAVRALK 208 (258)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
No 17
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.8e-45 Score=288.04 Aligned_cols=180 Identities=28% Similarity=0.473 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++..... .........+..++..+.++||||||+|||+|+|
T Consensus 31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (259)
T TIGR01929 31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG 110 (259)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence 578999999999999999999999985489999999987642211 1111111123467788999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.+
T Consensus 111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 190 (259)
T TIGR01929 111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEK 190 (259)
T ss_pred HHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 191 ~a~~~a~~la~~~~~a~~~~K 211 (259)
T TIGR01929 191 ETVRWCREILQKSPMAIRMLK 211 (259)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
No 18
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-45 Score=289.31 Aligned_cols=179 Identities=31% Similarity=0.518 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC------hhHH-HHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS------PSEI-HFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||+|. |++||+|.|++++.... .... ..+...+..++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999999999999998 79999999999875321 1111 2223345667888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK09245 111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190 (266)
T ss_pred CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++++++.+++++++++||.+++.+|
T Consensus 191 ~~~l~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK09245 191 ADQLLPAARALAERIAANPPHALRLTK 217 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999876
No 19
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=285.50 Aligned_cols=177 Identities=41% Similarity=0.682 Sum_probs=160.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.+++..++.|++++++||||. ++.||+|.|++++.....++.. ...+.+.+..+.+.+||+||++||+|+||
T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG 141 (290)
T KOG1680|consen 65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG 141 (290)
T ss_pred HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence 57899999999999999999999999 7999999999998764332211 11223445555589999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+|||.++++|++++.++|++|.+|++.+|+|.+|.++|+++++||++++++||+++|||++|+|.+++..+
T Consensus 142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~e 221 (290)
T KOG1680|consen 142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGE 221 (290)
T ss_pred chhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
|.+++++|+++||.++++.|
T Consensus 222 Av~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 222 AVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 20
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-45 Score=288.16 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHH-HHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTF-SFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..........+.....+.+ ..+.++||||||+|||+|+|
T Consensus 27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK06563 27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence 57899999999999999999999998 78999999999875421111111111222223 35789999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|.+++++++++++|..++++++++|++++++||+++||||+++|++++.+
T Consensus 106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (255)
T PRK06563 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLE 185 (255)
T ss_pred HHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK06563 186 RAIELAERIARAAPLGVQATL 206 (255)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
No 21
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-45 Score=289.61 Aligned_cols=179 Identities=26% Similarity=0.422 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-----------hhHHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-----------PSEIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++.... ..........+++++..+..+||||
T Consensus 34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 112 (272)
T PRK06142 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV 112 (272)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 78999999999874310 1122233445567888899999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~ 149 (180)
||+|||+|+|+|++|+++||+||++++++|++||.++|++|+.|+++++++++|..++++++++|++++|+||+++||||
T Consensus 113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~ 192 (272)
T PRK06142 113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVN 192 (272)
T ss_pred EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 150 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 150 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+ +++.+++.++++++++.||.+++.+|
T Consensus 193 ~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 193 RVYDDADALLAAAHATAREIAAKSPLAVRGTK 224 (272)
T ss_pred EecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99996 88999999999999999999999876
No 22
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-45 Score=286.73 Aligned_cols=178 Identities=23% Similarity=0.358 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+...+++++.++.++||||||+|||+|+|+
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (251)
T PRK06023 34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMGG-TSFGSEILDFLIALAEAEKPIVSGVDGLAIGI 111 (251)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhccccc-hhhHHHHHHHHHHHHhCCCCEEEEeCCceecH
Confidence 67899999999999999999999998 78999999999875422111 11233456778899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++++++||+||++++++|++||.++|++|+++.++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 112 G~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (251)
T PRK06023 112 GTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191 (251)
T ss_pred HHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (251)
T PRK06023 192 TLKAAEELAAKPPQALQIAR 211 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
No 23
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=2.8e-45 Score=286.46 Aligned_cols=177 Identities=37% Similarity=0.582 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+.. .........++..+..+||||||+|||+|+|+
T Consensus 30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 106 (255)
T PRK09674 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGA 106 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 57899999999999999999999998 7999999999987543221 11223345678889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~ 186 (255)
T PRK09674 107 GCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLER 186 (255)
T ss_pred HHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 187 a~~~a~~l~~~~~~a~~~~K 206 (255)
T PRK09674 187 ALQLASKIARHSPLALRAAK 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 24
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-45 Score=286.90 Aligned_cols=177 Identities=36% Similarity=0.579 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.+++|+++++|||||. +++||+|.|++++...+. ...+.+.+++++..+.++||||||+|||+|+|+
T Consensus 36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 112 (261)
T PRK08138 36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGG 112 (261)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcH
Confidence 57899999999999999999999998 789999999998754322 122334556788899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 192 (261)
T PRK08138 113 GCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPR 192 (261)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 193 a~~~a~~l~~~~~~a~~~~K 212 (261)
T PRK08138 193 ALELAREIARMPPLALAQIK 212 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 25
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=3.1e-45 Score=287.11 Aligned_cols=179 Identities=30% Similarity=0.498 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||.++++||+|.|++++....... ..+.......+.++..+||||||+|||+|+|+
T Consensus 30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (261)
T PRK03580 30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG 108 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999998558999999999875432211 11112223456788999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (261)
T PRK03580 109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188 (261)
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (261)
T PRK03580 189 ARELAQQLVNSAPLAIAALK 208 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 26
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-45 Score=286.75 Aligned_cols=179 Identities=27% Similarity=0.467 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||+|. +++||+|.|++++... +......+...+++++..+.++||||||+|||+|
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999998 7899999999987542 1222334456677888999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++++|.++..+|
T Consensus 190 ~~~a~~~a~~l~~~~~~~~~~~K 212 (260)
T PRK07511 190 LAEALALADQLAAGSPNALARIK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
No 27
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=3.4e-45 Score=288.79 Aligned_cols=179 Identities=30% Similarity=0.513 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-----------hHHHHHHHHHHHHHHHHhcCCCcE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 69 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 69 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..... .....+...+++++..+.++||||
T Consensus 36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 114 (275)
T PLN02664 36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 789999999998754211 112223345567788899999999
Q ss_pred EEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccc
Q 030277 70 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 149 (180)
Q Consensus 70 Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~ 149 (180)
||+|||+|+|+|++|+++||+||++++++|++||+++|+.|+.|+++++++++|..++++++++|++++++||+++||||
T Consensus 115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~ 194 (275)
T PLN02664 115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194 (275)
T ss_pred EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 150 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 150 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+ +++.+++.++++++++.+|.+++.+|
T Consensus 195 ~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K 226 (275)
T PLN02664 195 RVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226 (275)
T ss_pred eeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99995 88999999999999999999999876
No 28
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=5e-45 Score=285.22 Aligned_cols=178 Identities=29% Similarity=0.481 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh--hHH-HHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP--SEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.+++|+ +++|||||. +++||+|.|++++..... .+. ..+...+..++.++..+||||||+|||+|
T Consensus 27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 5789999999999998 999999998 789999999998754221 111 11222335577889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.||.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~~~~~~K 207 (256)
T TIGR02280 185 MDEAQALAVHLAAQPTRGLALTK 207 (256)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
No 29
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.9e-45 Score=285.90 Aligned_cols=179 Identities=43% Similarity=0.717 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++|+.++.|+++++||++|. +++||+|.|++++.....+....+.+.+++++.++..+||||||++||+|+|+
T Consensus 26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg 104 (245)
T PF00378_consen 26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG 104 (245)
T ss_dssp HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence 57899999999999999999999997 89999999999988775566777888999999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++++++||+||++++++|++||+++|++|++++++++++++|.+.+++++++|++++|+||+++||||+++|++++.++
T Consensus 105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 184 (245)
T PF00378_consen 105 GFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEE 184 (245)
T ss_dssp HHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHH
T ss_pred ccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++..||.+++.+|
T Consensus 185 a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 185 ALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999876
No 30
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.2e-45 Score=285.03 Aligned_cols=178 Identities=29% Similarity=0.448 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++..... .....+.+.+.+++.++.++||||||+|||+|+|
T Consensus 39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (266)
T PRK08139 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA 117 (266)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 57899999999999999999999998 789999999998754322 2223344556678889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++ ++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 196 (266)
T PRK08139 118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDA 196 (266)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHH
Confidence 9999999999999999999999999999998765 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.||.+++.+|
T Consensus 197 ~a~~~a~~la~~~~~a~~~~K 217 (266)
T PRK08139 197 AVARLAAVIAAKSPAAVRIGK 217 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
No 31
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-45 Score=284.81 Aligned_cols=177 Identities=29% Similarity=0.432 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++..............+.+.+..+.++||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA 109 (249)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence 57899999999999999999999998 78999999999876532222223344556677889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++.++++++++|+.++++++++|++++++||+++||||+++ +++.++
T Consensus 110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~ 187 (249)
T PRK05870 110 GLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAA 187 (249)
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (249)
T PRK05870 188 ALELAAGPAAAPRELVLATK 207 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 32
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-45 Score=287.12 Aligned_cols=179 Identities=30% Similarity=0.419 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-------hhHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... ..........+++++..+.++||||||+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 116 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999999864311 11111223455677888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccC-CcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceec
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~ 152 (180)
||+|+|+|++|+++||+||++++++|++||+++|++| +.|.++++++++|..++++++++|++++|+||+++|||++++
T Consensus 117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv 196 (276)
T PRK05864 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQV 196 (276)
T ss_pred CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceee
Confidence 9999999999999999999999999999999999997 688889999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 153 PAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++++.+++.+++++|+.+||.+++.+|
T Consensus 197 ~~~~l~~~a~~~a~~la~~~p~a~~~~K 224 (276)
T PRK05864 197 PDEQLLDTCYAIAARMAGFSRPGIELTK 224 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999998876
No 33
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-45 Score=284.77 Aligned_cols=178 Identities=28% Similarity=0.461 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC---hhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS---PSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.+++++++ |+++++|||||. |++||+|.|++++.... ... ...+...+..++..+.++||||||+|||+
T Consensus 32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 5789999999999 999999999998 78999999999874322 111 11122234457788999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|+++
T Consensus 110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred eehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.+++++++++||.+++.+|
T Consensus 190 l~~~a~~~a~~ia~~~~~a~~~~K 213 (262)
T PRK08140 190 LADEAQQLAAHLATQPTRGLALIK 213 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
No 34
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-45 Score=284.68 Aligned_cols=177 Identities=33% Similarity=0.487 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++......... ...+..+. .+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~--~~~~~~~~-~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP--ESGFGGLT-SRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh--hHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence 5789999999999999999999999855899999999987543221111 11223333 34589999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+++|++++.++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (259)
T PRK06494 109 GFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAA 188 (259)
T ss_pred HHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (259)
T PRK06494 189 AERWADDILACSPLSIRASK 208 (259)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999876
No 35
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-45 Score=285.42 Aligned_cols=178 Identities=28% Similarity=0.452 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++... ...........+++++..+.++||||||+|||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 57899999999999999999999998 6899999999987432 1111222234556788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++.. ++++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEAL 189 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHH
Confidence 99999999999999999999999999999999988765 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (262)
T PRK05995 190 DAKVDELLAALVANSPQAVRAGK 212 (262)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
No 36
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.1e-45 Score=286.90 Aligned_cols=178 Identities=26% Similarity=0.383 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .........+++++..+.++||||||+|||+|
T Consensus 34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 67899999999999999999999998 689999999998643211 11112233456788889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++.. ++++++|..++++++++|++++|+||+++|||++++|++++
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAEL 191 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999987655 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.+++++++++||.+++.+|
T Consensus 192 ~~~a~~~a~~la~~~p~a~~~~K 214 (265)
T PRK05674 192 EAQVEAWIANLLLNSPQALRASK 214 (265)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999876
No 37
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-45 Score=284.16 Aligned_cols=179 Identities=22% Similarity=0.366 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-h---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-P---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... . .....+.+.+++++.++.++||||||+|||+
T Consensus 30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 67899999999999999999999998 78999999999875321 1 1122234455678889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 189 LEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999877
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-44 Score=286.26 Aligned_cols=179 Identities=22% Similarity=0.370 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+.+++++..+.++||||||+|||+
T Consensus 45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999999999999998 7899999999987431 112233344555678889999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccC-CcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
|+|+|++|+++||+||++++++|++||.++|++| ++|.++++++++|..++++++++|++++|+||+++||||+++|++
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 9999999999999999999999999999999995 678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++.+++++++++||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (277)
T PRK08258 204 ELLAEAQALARRLAAGPTFAHGMTK 228 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999876
No 39
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=9.5e-45 Score=285.92 Aligned_cols=179 Identities=27% Similarity=0.474 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++.... ........ ....++..+.++||||||+|||+|+
T Consensus 41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence 67899999999999999999999998547999999999864321 11111111 2345677889999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++++.++++++|..++++++++|++++|+||+++||||+++|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (273)
T PRK07396 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLE 199 (273)
T ss_pred hHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++++|.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T PRK07396 200 KETVRWCREMLQNSPMALRCLK 221 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-45 Score=284.68 Aligned_cols=178 Identities=32% Similarity=0.553 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+...+++++.++.++|||+||+|||+|+|+
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV 110 (259)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence 57899999999999999999999998 69999999999876533222 33455667888899999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 190 (259)
T PRK06688 111 GVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAE 190 (259)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 191 a~~~a~~i~~~~~~a~~~~K 210 (259)
T PRK06688 191 ADAQAAKLAAGPASALRYTK 210 (259)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998776
No 41
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-44 Score=284.23 Aligned_cols=176 Identities=28% Similarity=0.453 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++........ .....+++..+.++||||||+|||+|+|+
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 67899999999999999999999998 689999999987643111111 11234567778999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (265)
T PLN02888 114 GFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKK 193 (265)
T ss_pred HHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.+|.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 194 AREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
No 42
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-44 Score=287.49 Aligned_cols=179 Identities=28% Similarity=0.390 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---C-------------hh-HHHHHHHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---S-------------PS-EIHFYVNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~-------------~~-~~~~~~~~~~~~~~~~~ 63 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... . .. ....+.+..+.++..+.
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (296)
T PRK08260 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110 (296)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 7999999999986420 0 00 11122333456788899
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~ 143 (180)
.+||||||+|||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+
T Consensus 111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~ 190 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccceecCCchHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030277 144 SLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 144 ~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 180 (180)
++||||+++|++++.+++.+++++++++ +|.+++.+|
T Consensus 191 ~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K 228 (296)
T PRK08260 191 DGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR 228 (296)
T ss_pred HCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999995 999998876
No 43
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.5e-44 Score=283.13 Aligned_cols=178 Identities=22% Similarity=0.454 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+ +++|||||.+ +++||+|.|++++.....+ ...+.+.+++++..+..+||||||+|||+|+|
T Consensus 32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~G 109 (261)
T PRK11423 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWG 109 (261)
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHHHHHHHHHhCCCCEEEEEecEEec
Confidence 5789999999999887 9999999963 5899999999987432211 12334456778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+++|++++++
T Consensus 110 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~ 189 (261)
T PRK11423 110 GAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELED 189 (261)
T ss_pred hHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++++|.+++.+|
T Consensus 190 ~a~~~a~~l~~~~~~a~~~~K 210 (261)
T PRK11423 190 FTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
No 44
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-44 Score=280.69 Aligned_cols=176 Identities=25% Similarity=0.443 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++....... ..+. . ++++..+.++||||||+|||+|+|+
T Consensus 33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~-~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-HHHHHHHHcCCCCEEEEecCceech
Confidence 57899999999999999999999998 78999999999875433221 1122 2 5678889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+.++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (249)
T PRK07110 109 GLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEK 188 (249)
T ss_pred HHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 189 ALELARSLAEKPRHSLVLLK 208 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998877
No 45
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-44 Score=283.20 Aligned_cols=178 Identities=32% Similarity=0.536 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-HHH-H-H-HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-EIH-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-~~~-~-~-~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++...... ... . + ...+..+ .++..+||||||+|||+
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDAL-LKGRRLTKPLIAAVEGP 110 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHHH-HHHhcCCCCEEEEECCe
Confidence 67899999999999999999999998 6899999999987643221 111 0 1 1122223 34789999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|.++++++|++++|..++++++++|++++|+||+++||||+++|+++
T Consensus 111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred EeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~~~~~~~~a~~~~K 214 (263)
T PRK07799 191 ALDKALELAELINANGPLAVQAIL 214 (263)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999998876
No 46
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-44 Score=281.95 Aligned_cols=178 Identities=26% Similarity=0.392 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++... ...........++.++..+..+||||||+|||+|
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999998 7899999999986431 1111122234456788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||.++|++|++++++++ +++|..++++++++|++++++||+++||||+++|++++
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERL 190 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 99999999999999999999999999999999999888755 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 191 ~~~~~~~a~~l~~~~~~a~~~~K 213 (262)
T PRK07468 191 DAAVEAEVTPYLSCAPGAVAAAK 213 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999998876
No 47
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-44 Score=282.83 Aligned_cols=179 Identities=27% Similarity=0.471 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHhhcCC-CceEEEEEeCCCCceEecCCccccccCCh------hHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKERRQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~D~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+ ++++|||||. +++||+|.|++++..... .....+...++.++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK05981 32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6789999999999876 4999999998 689999999998754221 1122233456778889999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|...+++++++|++++++||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK05981 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190 (266)
T ss_pred CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK05981 191 DAELMAEAMKLAHELANGPTVALGLIR 217 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999998876
No 48
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-44 Score=280.53 Aligned_cols=175 Identities=32% Similarity=0.484 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++...+.... ....+..++. ..+||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~~--~~~~kPvIaav~G~a~Gg 105 (254)
T PRK08252 31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPSI--PGRGFGGLTE--RPPRKPLIAAVEGYALAG 105 (254)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchhh--hHHHHHHHHH--hcCCCCEEEEECCEEehH
Confidence 67899999999999999999999998 789999999998764321111 1112222221 469999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 106 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 185 (254)
T PRK08252 106 GFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDA 185 (254)
T ss_pred HHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 186 a~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 186 ALELAERIAANGPLAVAASK 205 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 49
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-44 Score=280.89 Aligned_cols=177 Identities=37% Similarity=0.524 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.......... .....+...+.++||||||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg 107 (254)
T PRK08259 31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG 107 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence 67899999999999999999999998 78999999999875432211110 0011112233579999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|.++++++|++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 187 (254)
T PRK08259 108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAA 187 (254)
T ss_pred HHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (254)
T PRK08259 188 AEELAAELAAFPQTCLRADR 207 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999877
No 50
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=4.5e-44 Score=280.02 Aligned_cols=178 Identities=40% Similarity=0.659 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCcccccc-CChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++.. ........+....+.++.++.++||||||+|||+|+|
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (257)
T COG1024 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG 111 (257)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence 67899999999999999999999999 599999999999874 2222233556667789999999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC-chHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 158 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~-~~~~ 158 (180)
||++|+++||+||++++++|++||+++|++|++|++++++|++|..+++++++||++++++||+++|||++++++ +++.
T Consensus 112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~ 191 (257)
T COG1024 112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191 (257)
T ss_pred chhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHH
Confidence 999999999999999999999999999999987999999999999999999999999999999999999999986 7999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++. +|.++..+|
T Consensus 192 ~~a~~~a~~~a~-~~~a~~~~k 212 (257)
T COG1024 192 ERALELARRLAA-PPLALAATK 212 (257)
T ss_pred HHHHHHHHHHcc-CHHHHHHHH
Confidence 999999999998 888887765
No 51
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-44 Score=280.59 Aligned_cols=177 Identities=33% Similarity=0.457 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.+ .|+++++|||+|. +++||+|.|++++.... ......+...+++++..+..+||||||+|||+|+|
T Consensus 34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G 111 (260)
T PRK07659 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG 111 (260)
T ss_pred HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence 578999999999 5899999999998 78999999999875432 22334445666788889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|+.++++++++|++++|+||+++||||+++ ++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~ 190 (260)
T PRK07659 112 LGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190 (260)
T ss_pred HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++++++||.+++.+|
T Consensus 191 ~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07659 191 AAKQKISEWLQKPLKAMIETK 211 (260)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
No 52
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-44 Score=278.19 Aligned_cols=176 Identities=27% Similarity=0.407 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++..... .......+.+++++..+.++||||||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 107 (249)
T PRK07938 29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG 107 (249)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence 67899999999999999999999998 789999999998754321 2222223445677888999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+|++|+++||+||++++++|++||+++|++ ++++++++++|..++++++++|++++++||+++|||++++|++++++
T Consensus 108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 184 (249)
T PRK07938 108 GGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDE 184 (249)
T ss_pred hHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHH
Confidence 999999999999999999999999999986 34668999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++++|.+++.+|
T Consensus 185 ~a~~~a~~la~~~~~a~~~~K 205 (249)
T PRK07938 185 AALEVARKIAAKDTRVIRAAK 205 (249)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
No 53
>PLN02921 naphthoate synthase
Probab=100.00 E-value=6.5e-44 Score=286.45 Aligned_cols=180 Identities=27% Similarity=0.452 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHH-HHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++............. ...+++..+.++||||||+|||+|+|
T Consensus 95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G 174 (327)
T PLN02921 95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG 174 (327)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence 67899999999999999999999998558999999998764321110101111 12456778899999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
||++|+++||+||++++++|++||.++|++|.+++++++++++|..++++++++|++++|+||+++||||+++|++++.+
T Consensus 175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~ 254 (327)
T PLN02921 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEG 254 (327)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.+++++|++++|.+++.+|
T Consensus 255 ~a~~~a~~la~~~p~al~~~K 275 (327)
T PLN02921 255 ETVKWCREILRNSPTAIRVLK 275 (327)
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999887
No 54
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=4.8e-44 Score=282.31 Aligned_cols=180 Identities=25% Similarity=0.351 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCceEecCCccccccCCh--hHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKERRQMSP--SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||.+ +++||+|.|++++..... .....+....+.++.++.++||||||+|||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 678999999999999999999999984 279999999998753211 11223333345677889999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccc-cCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
+|+|++|+++||+||++++++|++||+++|+ +|+.++++++++++|..++++++++|++++++||+++||||+++|+++
T Consensus 119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 9999999999999999999999999999999 598888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++.++++++++.+|.+++.+|
T Consensus 199 l~~~a~~~a~~l~~~~~~a~~~~K 222 (278)
T PLN03214 199 LMEAAASAMERALKLPSAARAATK 222 (278)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999877
No 55
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-44 Score=278.67 Aligned_cols=176 Identities=32% Similarity=0.580 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++... .......+...+++++.++.++||||||+|||+|+
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 67899999999999999999999998 7999999999987542 11222333445567888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|+. +.++.+++++|..++++++++|++++++||+++||||+++|++++.
T Consensus 110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~ 186 (257)
T PRK06495 110 GAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELM 186 (257)
T ss_pred hhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999996 3466799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++.++++++++.||.+++.+|
T Consensus 187 ~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 187 PEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
No 56
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-44 Score=281.07 Aligned_cols=179 Identities=30% Similarity=0.504 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHH------HHH----HHHHHHHHHHHhcCCCcEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI------HFY----VNTLRSTFSFLEALPIPTI 70 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~I 70 (180)
|+++|.++++.++.|+++++|||||. |++||+|.|++++......+. ..+ ...+++++..+.++|||||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (272)
T PRK06210 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI 112 (272)
T ss_pred HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence 57899999999999999999999998 789999999998754221100 011 1123456778899999999
Q ss_pred EEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 71 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 71 a~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
|+|||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+
T Consensus 113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~ 192 (272)
T PRK06210 113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNR 192 (272)
T ss_pred EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030277 151 YVPAGQAQLKALEIAQEINQK-VQSVFRILL 180 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 180 (180)
++|++++.+++.++++++++. +|.++..+|
T Consensus 193 vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 193 VVPPDELMERTLAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999985 999998876
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=2.7e-43 Score=274.53 Aligned_cols=173 Identities=27% Similarity=0.428 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|+.++.. .........+.+++..+.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (251)
T TIGR03189 28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGG 103 (251)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeH
Confidence 67899999999999999999999998 789999999987532 11122334456788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++ +++++++++|+.++++++++|++++++||+++|||++++|+.+ ++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~ 180 (251)
T TIGR03189 104 GLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NA 180 (251)
T ss_pred HHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HH
Confidence 99999999999999999999999999999875 5778999999999999999999999999999999999998643 56
Q ss_pred HHHH-HHHHhccCHHHHHhhC
Q 030277 161 ALEI-AQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~-a~~~~~~~~~a~~~~K 180 (180)
+.++ +++++++||.+++.+|
T Consensus 181 a~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 181 ALAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 6666 6899999999998876
No 58
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.8e-43 Score=276.85 Aligned_cols=171 Identities=26% Similarity=0.434 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCceEecCCccccccC---Ch-hHHHHHHHHHHHHHHHHh---cCCCc
Q 030277 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKERRQM---SP-SEIHFYVNTLRSTFSFLE---ALPIP 68 (180)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~-~~~~~~~~~~~~~~~~~~---~~~kp 68 (180)
|+.+|.++++++++ |+++++|||||.++++||+|.|++++... .. .....+...+.+.+.++. .+|||
T Consensus 44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP 123 (287)
T PRK08788 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI 123 (287)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 57899999999998 89999999999867899999999986431 11 111112222233333333 79999
Q ss_pred EEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCcc
Q 030277 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 148 (180)
Q Consensus 69 ~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv 148 (180)
|||+|||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++|||
T Consensus 124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV 203 (287)
T PRK08788 124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLV 203 (287)
T ss_pred EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCchHHHHHHHHHHHHhcc
Q 030277 149 NYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 149 ~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
|+++|++++.+++.+++++++.+
T Consensus 204 ~~vv~~~el~~~a~~~a~~ia~~ 226 (287)
T PRK08788 204 DVLVEDGQGEAAVRTFIRKSKRK 226 (287)
T ss_pred cEecCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976
No 59
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-43 Score=269.87 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++ +++++||+||. +++||+|.|++++... ......+...+++++.++.++||||||++||+|+|+
T Consensus 30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg 105 (229)
T PRK06213 30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAK 105 (229)
T ss_pred HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHH
Confidence 5789999999988 56799999998 7999999999987543 233344556667888999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 81 GLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|++|+++||+||++++ ++|++||+++|++|+.++...+++++|...+++++++|++++++||+++||||+++|++++.+
T Consensus 106 G~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (229)
T PRK06213 106 GAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLA 185 (229)
T ss_pred HHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHH
Confidence 9999999999999999 999999999999888777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++++++++.+|.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (229)
T PRK06213 186 RAQAAARELAGLNMGAHAATK 206 (229)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998877
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-43 Score=275.49 Aligned_cols=177 Identities=29% Similarity=0.473 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH---H----HHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH---F----YVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++...+..... . ....+..++..+.++||||||+|
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav 109 (262)
T PRK07509 31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109 (262)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999998 7899999999987543221111 1 11233456677889999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||++++
T Consensus 110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+ +.+++.+++++++++||.++..+|
T Consensus 190 ~--~~~~a~~~a~~l~~~~~~~~~~~K 214 (262)
T PRK07509 190 D--PLAAALALAREIAQRSPDAIAAAK 214 (262)
T ss_pred h--HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3 678999999999999999998876
No 61
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-42 Score=276.06 Aligned_cols=177 Identities=29% Similarity=0.447 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCCh-------------------h---HHHHHHHHHHHH
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSP-------------------S---EIHFYVNTLRST 58 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~-------------------~---~~~~~~~~~~~~ 58 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++..... . ........+.++
T Consensus 32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (288)
T PRK08290 32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM 110 (288)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 57899999999999999999999998 789999999998632110 0 011122345567
Q ss_pred HHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCC
Q 030277 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 138 (180)
Q Consensus 59 ~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 138 (180)
+..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|+ |+ ..++.+++++|..+++++++||++++
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~ 188 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLT 188 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCC
Confidence 78899999999999999999999999999999999999999999999999 44 34667889999999999999999999
Q ss_pred HHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 139 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 139 a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|+||+++||||+++|++++++++.++++++++.||.+++.+|
T Consensus 189 A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 230 (288)
T PRK08290 189 ADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230 (288)
T ss_pred HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876
No 62
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.4e-42 Score=276.88 Aligned_cols=180 Identities=28% Similarity=0.452 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCC------CceEecCCccccccC-------Ch-h--HHHHH-HHHHHHHHHHHh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKERRQM-------SP-S--EIHFY-VNTLRSTFSFLE 63 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~D~~~~~~~-------~~-~--~~~~~-~~~~~~~~~~~~ 63 (180)
|+.+|.++++.++.|+++++|||||.|+ ++||+|.|++++... .. . ..... .....++.+.+.
T Consensus 53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (302)
T PRK08321 53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR 132 (302)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999842 699999999875321 00 0 00011 111234667788
Q ss_pred cCCCcEEEEECCccchhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.+||||||+|||+|+|+|++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA 212 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEA 212 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++||||+++|++++.+++.+++++|++.+|.+++++|
T Consensus 213 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 213 HDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred HHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
No 63
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=7.8e-43 Score=282.32 Aligned_cols=179 Identities=26% Similarity=0.497 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--h-hH-HHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--P-SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++++.++.|+++++|||||.|+++||+|.|++++.... . .. ...+....++++.++.++||||||+|||+
T Consensus 31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999999558999999999875421 1 11 11334444567888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|+|++|+++||+||++++++|++||+++|++|++|++++|+++.| ..+++++++|++++|+||+++|||++++|+++
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999877 68999999999999999999999999999988
Q ss_pred HHHH--------------------------------------------------------------HHHHHHHHhccCHH
Q 030277 157 AQLK--------------------------------------------------------------ALEIAQEINQKVQS 174 (180)
Q Consensus 157 ~~~~--------------------------------------------------------------a~~~a~~~~~~~~~ 174 (180)
+.+. +.+++++|++++|.
T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~ 269 (342)
T PRK05617 190 LPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPT 269 (342)
T ss_pred HHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcH
Confidence 8776 88999999999999
Q ss_pred HHHhhC
Q 030277 175 VFRILL 180 (180)
Q Consensus 175 a~~~~K 180 (180)
+++.+|
T Consensus 270 a~~~~k 275 (342)
T PRK05617 270 SLKVTL 275 (342)
T ss_pred HHHHHH
Confidence 999876
No 64
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-42 Score=271.40 Aligned_cols=176 Identities=23% Similarity=0.393 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC--ChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM--SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. |++||+|.|++++... .+.. ...+...+.+++.++.++||||||+|||+|
T Consensus 34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 57899999999999999999999998 7899999999987542 1111 223445567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|+++++++++++. ..++++++++|++++++||+++||||++++ ++
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l 189 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DV 189 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HH
Confidence 999999999999999999999999999999999999999999875 568999999999999999999999999974 58
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030277 158 QLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 158 ~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+++.++++++++.+|.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (260)
T PRK07827 190 DAAVAALLADLRRGSPQGLAESK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999999999887
No 65
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-42 Score=267.23 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+.+|.++++.++.+ ++++|||||. |++||+|.|+++... ...+.+.+..++.++.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 578999999999855 9999999998 789999999985311 122334556788889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++ + ++
T Consensus 101 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~-~~ 176 (243)
T PRK07854 101 GLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---L-AD 176 (243)
T ss_pred HHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---H-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 3 38
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.+++++++++||.+++.+|
T Consensus 177 a~~~a~~l~~~~~~a~~~~K 196 (243)
T PRK07854 177 AQAWAAEIAGLAPLALQHAK 196 (243)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 66
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-42 Score=267.78 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.++.|+++++|||||. +++||+|.|++++.... ...+.+.++.++..+.++||||||+|||+|+|+
T Consensus 28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999998 68999999999865321 122334556778889999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|++|+++||+||++++++|++||.++|++|+.+.++++++++|. ++++++++|++++|+||+++||||++ +++.++
T Consensus 104 G~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~ 179 (248)
T PRK06072 104 CIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSD 179 (248)
T ss_pred HHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHH
Confidence 99999999999999999999999999999999999999999996 89999999999999999999999964 467889
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030277 161 ALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 161 a~~~a~~~~~~~~~a~~~~K 180 (180)
+.++++++++.||.+++.+|
T Consensus 180 a~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 180 AEEMANRISNGPFQSYIAAK 199 (248)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
No 67
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-42 Score=274.74 Aligned_cols=176 Identities=26% Similarity=0.365 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-----------------------H--HHHHHHHH
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-----------------------E--IHFYVNTL 55 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-----------------------~--~~~~~~~~ 55 (180)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++...... . .......+
T Consensus 38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08272 38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116 (302)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence 67899999999999999999999998 7999999999987532110 0 01223455
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCC
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 135 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 135 (180)
++++..+.++||||||+|||+|+|+|++|+++||+||++++++|++||+++|.+|+. ..+++++|..+++++++||+
T Consensus 117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~ 193 (302)
T PRK08272 117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGD 193 (302)
T ss_pred HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCC
Confidence 677888999999999999999999999999999999999999999999998666643 35678899999999999999
Q ss_pred CCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 136 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 136 ~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++|+||+++||||+++|++++.+++.+++++|++.||.+++.+|
T Consensus 194 ~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 194 CITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred ccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999877
No 68
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=9.6e-42 Score=272.83 Aligned_cols=179 Identities=24% Similarity=0.339 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++... .+.....+.+.+++++..+..++|||||+|||+|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 6789999999999999999999999954799999999987542 1223344455567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||++++|+.++
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ------------HHHHHHHHHHHhccCHH--HHHhh
Q 030277 158 ------------QLKALEIAQEINQKVQS--VFRIL 179 (180)
Q Consensus 158 ------------~~~a~~~a~~~~~~~~~--a~~~~ 179 (180)
++.+.++++.+..+++. +++..
T Consensus 216 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T TIGR03200 216 DGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG 251 (360)
T ss_pred CcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence 77788888888887776 54443
No 69
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.2e-41 Score=278.81 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......+....+.+...+.++|||+||+|||+
T Consensus 65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence 68899999999999999999999998 68999999999875321 11122334444556778999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .++++++||++++|+||+++||||+++|+++
T Consensus 144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 999999999999999999999999999999999999999999999996 8999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+ +++.+++++++..+|.++..+|
T Consensus 223 l-~~~~~~~~~i~~~~p~av~~~k 245 (401)
T PLN02157 223 I-PVMEEQLKKLLTDDPSVVESCL 245 (401)
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHH
Confidence 8 6788999999999998887665
No 70
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-41 Score=268.63 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc-c----C--Ch--hHHHHH---HH---HHHHHHHHHhcC
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR-Q----M--SP--SEIHFY---VN---TLRSTFSFLEAL 65 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~----~--~~--~~~~~~---~~---~~~~~~~~~~~~ 65 (180)
|+.+|.++++.++.|++|++|||||. |++||+|.|+++.. . . +. .....+ .. .....+..+.++
T Consensus 33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (298)
T PRK12478 33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA 111 (298)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence 67899999999999999999999998 78999999998621 1 0 00 001111 01 112356678899
Q ss_pred CCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccc-cccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHh
Q 030277 66 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 144 (180)
Q Consensus 66 ~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~-G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~ 144 (180)
+|||||+|||+|+|+|++|+++||+||++++++|++||+++ |+++. .++ .+++|..++++++++|++++|+||++
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~ 187 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAE 187 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999997 88753 232 35699999999999999999999999
Q ss_pred cCccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 145 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 145 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+|||++++|++++.+++.+++++++..||.+++.+|
T Consensus 188 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (298)
T PRK12478 188 AELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223 (298)
T ss_pred cCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999887
No 71
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=4.6e-41 Score=260.20 Aligned_cols=172 Identities=22% Similarity=0.397 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHhhcCCCce-EEEEEeCCCCceEecCCccccccC--ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKERRQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|++++ +||++|. +++||+|.|++++... .......+...+++++.++.++||||||+|||+|
T Consensus 27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 5789999999999999975 6667776 7899999999886432 1222233445567788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEc-CCeEEeCccccccccCCcchhhhhhhhcCHHHH-HHHHhcCCCCCHHHHHhcCccceecCC-
Q 030277 78 LGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVA-KDIIFTGRKVSGKDAMSLGLVNYYVPA- 154 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~-~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~ea~~~Glv~~v~~~- 154 (180)
+|+|++|+++||+||++ ++++|++||.++|+.++.+++.++++++|..++ ++++++|++++++||+++||||+++|+
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 99999999999999998 457999999999997444457789999999999 699999999999999999999999985
Q ss_pred chHHHHHHHHHHHHhccCH
Q 030277 155 GQAQLKALEIAQEINQKVQ 173 (180)
Q Consensus 155 ~~~~~~a~~~a~~~~~~~~ 173 (180)
+++.+++.++|+++++.++
T Consensus 186 ~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 186 EETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHHHHHHHHHHHHhhccC
Confidence 6899999999999998744
No 72
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.3e-41 Score=276.87 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC--hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|++|++|||||. |++||+|.|++++.... ...........+.++..+.++|||+||+|||+|+
T Consensus 39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 67899999999999999999999998 68999999999875321 1122223334445677889999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|++|+++++++++|. .++++++||++++++||+++|||++++|++++.
T Consensus 118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (379)
T PLN02874 118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLP 196 (379)
T ss_pred ecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHH
Confidence 9999999999999999999999999999999999999999999885 899999999999999999999999999988776
Q ss_pred H
Q 030277 159 L 159 (180)
Q Consensus 159 ~ 159 (180)
+
T Consensus 197 ~ 197 (379)
T PLN02874 197 E 197 (379)
T ss_pred H
Confidence 5
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.5e-41 Score=263.31 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChh-H-HHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPS-E-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++ +++++||+||. +++||+|.|++++...... . .....+.+..++.++.++||||||+|||+|+
T Consensus 32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 108 (255)
T PRK07112 32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN 108 (255)
T ss_pred HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence 5789999999998 46999999998 7899999999987542211 1 1111334467888899999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|++|+++||+||++++++|++||+++|++|+++ +.++++++|..++++++++|++++|+||+++||||+++|+++.
T Consensus 109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~- 186 (255)
T PRK07112 109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT- 186 (255)
T ss_pred cchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH-
Confidence 99999999999999999999999999999999865 5679999999999999999999999999999999999987553
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030277 159 LKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 159 ~~a~~~a~~~~~~~~~a~~~~K 180 (180)
.+.++++++++.+|.+++.+|
T Consensus 187 -~~~~~a~~l~~~~p~a~~~~K 207 (255)
T PRK07112 187 -LLRKHLLRLRCLNKAAVARYK 207 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHH
Confidence 578899999999999999876
No 74
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=250.69 Aligned_cols=180 Identities=54% Similarity=0.848 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
|+++|.++++.+..|+.+++|++++.-++.||+|.|+++-.++++.+...|...++.++..+.+.|.||||++.|.+.||
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 57899999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc----h
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG----Q 156 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~----~ 156 (180)
|++++++||+|+++++++++++|.+++++|+.|++++|+|.+|.+.++++++|++.+++.||...|||+++|... .
T Consensus 139 GLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegda 218 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDA 218 (291)
T ss_pred chhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999754 5
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030277 157 AQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
..++++++|++|.-+.|.++++.|
T Consensus 219 a~~kal~lA~eilp~gPiavr~aK 242 (291)
T KOG1679|consen 219 AYQKALELAREILPQGPIAVRLAK 242 (291)
T ss_pred HHHHHHHHHHHhccCCchhhhHHH
Confidence 667799999999999999999876
No 75
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-42 Score=254.74 Aligned_cols=179 Identities=29% Similarity=0.563 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC-----C-------hhHHHHHHHHHHHHHHHHhcCCCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-----S-------PSEIHFYVNTLRSTFSFLEALPIP 68 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~kp 68 (180)
|++|+.++++.+..||++++|||+|+ |++||+|+|+..+... . ....+.++..+|+.+..|.+||||
T Consensus 50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP 128 (292)
T KOG1681|consen 50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP 128 (292)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence 68999999999999999999999999 8999999998765432 1 122566778889999999999999
Q ss_pred EEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-HHHHHHHHhcCCCCCHHHHHhcCc
Q 030277 69 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGL 147 (180)
Q Consensus 69 ~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~ea~~~Gl 147 (180)
+|++++|+|+|+|+.|..+||+|++++|+.|+.-|+.+|+..+.|...+|++.+| .+.++++.+|+++|+|.||++.||
T Consensus 129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GL 208 (292)
T KOG1681|consen 129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGL 208 (292)
T ss_pred HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cceecCC-chHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 148 VNYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 148 v~~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++|+|+ +++...+..+|+.|+.++|.++..+|
T Consensus 209 vSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 209 VSRVFPDKEELLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred chhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence 9999997 78999999999999999999887765
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.2e-40 Score=277.63 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCc-eEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCcc
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v-~G~~ 77 (180)
|+++|.+++..++ +|+++++|||||. |+. ||+|.|++.....+...........+.++.++.+++||+||+| ||+|
T Consensus 299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 5789999999998 4599999999998 566 9999999843221211112233344567889999999999999 8999
Q ss_pred chhh-HHHHhhCCEEEE-------cCCeEEeCccccccccCCcchhhhhhhhc-CHHHH--HHHHhcCCCCCHHHHHhcC
Q 030277 78 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGAGGTQRLPRLV-GKSVA--KDIIFTGRKVSGKDAMSLG 146 (180)
Q Consensus 78 ~g~G-~~l~~~~D~~i~-------~~~~~~~~~e~~~G~~p~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~ea~~~G 146 (180)
+||| ++|+++||++|+ +++++|++||+++|++|+++++++|++++ |..++ ++++++|++++|+||+++|
T Consensus 378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~G 457 (546)
T TIGR03222 378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLG 457 (546)
T ss_pred eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcC
Confidence 9999 999999999999 89999999999999999999999999998 99888 5699999999999999999
Q ss_pred ccceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 147 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 147 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
||++++|++++.+++.++++++++++|.+++.+|
T Consensus 458 lv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 458 LVTAAPDDIDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred CcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999887
No 77
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4e-40 Score=279.01 Aligned_cols=180 Identities=19% Similarity=0.164 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHhhc-CCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC-Cccc
Q 030277 1 MLRGLKHAFETISE-DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~-G~~~ 78 (180)
|+.+|.++++.++. |+++++|||||.|++.||+|.|++.....+..........++.++.++.++||||||+|| |+|+
T Consensus 303 ~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~ 382 (550)
T PRK08184 303 MARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCF 382 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCcee
Confidence 67899999999986 799999999998325999999986322111111122234455678889999999999997 9999
Q ss_pred hhh-HHHHhhCCEEEEc-------CCeEEeCccccccccCCcchhhhhhhh-cCHHHHHHH--HhcCCCCCHHHHHhcCc
Q 030277 79 GGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDI--IFTGRKVSGKDAMSLGL 147 (180)
Q Consensus 79 g~G-~~l~~~~D~~i~~-------~~~~~~~~e~~~G~~p~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~ea~~~Gl 147 (180)
||| ++|+++||+||++ ++++|++||+++|++|+++++++|+++ +|..+++++ +++|++++|+||+++||
T Consensus 383 GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GL 462 (550)
T PRK08184 383 AGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGL 462 (550)
T ss_pred hhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCC
Confidence 999 9999999999999 999999999999999999999999988 699999987 58999999999999999
Q ss_pred cceecCCchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 148 VNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 148 v~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
|++++|++++++++.++++++++.||.+++.+|
T Consensus 463 v~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 463 VTAAPDDIDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred cccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999887
No 78
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=4e-40 Score=268.84 Aligned_cols=176 Identities=21% Similarity=0.410 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-h---hHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-P---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|++|++|||+|. |++||+|.|++++.... . .....+.+..+.+...+.++|||+||++||+
T Consensus 37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence 68899999999999999999999998 58999999999875321 1 1112223333445667899999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|. .++++++||++++|+||+++||+|+++|+++
T Consensus 116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 999999999999999999999999999999999999999999999887 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhh
Q 030277 157 AQLKALEIAQEINQKVQSVFRIL 179 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~~~~ 179 (180)
+.+.+.+++ +++..+|.++...
T Consensus 195 l~~~~~~la-~~~~~~p~~~~~~ 216 (381)
T PLN02988 195 LTALEADLC-RIGSNDPTFASTI 216 (381)
T ss_pred HHHHHHHHH-HhhccCHHHHHHH
Confidence 999888888 7777777776554
No 79
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.7e-40 Score=285.60 Aligned_cols=170 Identities=37% Similarity=0.594 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+.++.++.++.++||||||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 67899999999999999999999998 6899999999987542 1222334455667788899999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l 193 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKL 193 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030277 158 QLKALEIAQEINQK 171 (180)
Q Consensus 158 ~~~a~~~a~~~~~~ 171 (180)
.+++.+++++++..
T Consensus 194 ~~~a~~~a~~la~~ 207 (715)
T PRK11730 194 QEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999965
No 80
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.4e-39 Score=243.36 Aligned_cols=167 Identities=46% Similarity=0.798 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH--HHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE--IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+++|.++++.++.|+++++|||||. ++.||+|.|++++....... ...+.+.+++++.++..++||+|+++||+|.
T Consensus 27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 57899999999999999999999998 89999999999987655443 5667888899999999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|+|+.++++||+||++++++|++||.++|+.|+.+.++++++++|...+++++++|++++++||+++||||++++++++.
T Consensus 106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred cHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030277 159 LKALEIAQEI 168 (180)
Q Consensus 159 ~~a~~~a~~~ 168 (180)
+++.++++++
T Consensus 186 ~~a~~~a~~~ 195 (195)
T cd06558 186 AAALELARRL 195 (195)
T ss_pred HHHHHHHhhC
Confidence 9999988763
No 81
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.8e-39 Score=261.87 Aligned_cols=173 Identities=23% Similarity=0.422 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC----hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......++...+.+...+.++|||+||++||+
T Consensus 70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 68999999999999999999999998 68999999999875421 12334455667778888999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
|+|||++|+++||+||++++++|++||+++|++|+.|++++++|+.|. .++++++||++++++||+++||+++++|+++
T Consensus 149 amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 999999999999999999999999999999999999999999999987 4999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030277 157 AQLKALEIAQEINQKVQSVF 176 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~ 176 (180)
+ +.+.+.+.++...++.++
T Consensus 228 l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 228 L-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred H-HHHHHHHHhhccCCHHHH
Confidence 7 666777766665554443
No 82
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.4e-39 Score=279.31 Aligned_cols=167 Identities=41% Similarity=0.700 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||+|.++++||+|.|++++.... ......+.+..++++.++.++||||||+|||+|+|
T Consensus 35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 114 (708)
T PRK11154 35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG 114 (708)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 57899999999999999999999997678999999999875432 22233344556778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++|++++
T Consensus 115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 99999999999999987 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030277 158 QLKALEIAQE 167 (180)
Q Consensus 158 ~~~a~~~a~~ 167 (180)
.+++.++|++
T Consensus 195 ~~~a~~~A~~ 204 (708)
T PRK11154 195 LEVAVELAKK 204 (708)
T ss_pred HHHHHHHHHh
Confidence 9999999988
No 83
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.7e-38 Score=275.92 Aligned_cols=177 Identities=39% Similarity=0.631 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCC-hhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|.++++.++.|+++++|||++..+++||+|.|++++.... ......+.+.++.++.++.++||||||+|||+|+|
T Consensus 30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G 109 (699)
T TIGR02440 30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG 109 (699)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 57899999999999999999997543478999999999875422 22333345566778889999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 80 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|++|+++||+||++++ ++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 99999999999999986 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------------HHhccCHHHHH
Q 030277 158 QLKALEIAQ-------------EINQKVQSVFR 177 (180)
Q Consensus 158 ~~~a~~~a~-------------~~~~~~~~a~~ 177 (180)
.+++.++++ ++++.+|.+.+
T Consensus 190 ~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 190 LDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred HHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 999999998 57777666643
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.1e-38 Score=276.79 Aligned_cols=169 Identities=38% Similarity=0.610 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC---ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
|+.+|.++++.++.|+++++|||||. +++||+|.|++++... +......+.+..++++.++.++||||||++||+|
T Consensus 35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 6899999999987542 2223334455667889999999999999999999
Q ss_pred chhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchH
Q 030277 78 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 157 (180)
Q Consensus 78 ~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~ 157 (180)
+|+|++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l 193 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKL 193 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030277 158 QLKALEIAQEINQ 170 (180)
Q Consensus 158 ~~~a~~~a~~~~~ 170 (180)
.+++.++++++..
T Consensus 194 ~~~a~~~a~~~~~ 206 (714)
T TIGR02437 194 GAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988554
No 85
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.1e-38 Score=265.53 Aligned_cols=174 Identities=26% Similarity=0.361 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCceEecCCccccccCChhH---HHHHH-HHHHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE---IHFYV-NTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++|+.++ .|+++++|||||.++++||+|.|++++....... ..... .....+.+.+.++||||||+|||
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG 128 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG 128 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 7999999999997678999999999874321111 11111 11233455677899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCC--eEEeCcccc-ccccCCcchhhhhh--hhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~--~~~~~~e~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++.++. +++|..++++++++|++++++||+++||||+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~ 208 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDE 208 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceE
Confidence 999999999999999999986 799999997 99999999988887 6899999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhccCHH
Q 030277 151 YVPAGQAQLKALEIAQEINQKVQS 174 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~~~~ 174 (180)
++|++++.+++.++++++++.||.
T Consensus 209 vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 209 VVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998873
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.3e-37 Score=263.69 Aligned_cols=174 Identities=28% Similarity=0.386 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCceEecCCccccccCChhHH---HHHHHH-HHHHHHHHhcCCCcEEEEECC
Q 030277 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEI---HFYVNT-LRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~kp~Ia~v~G 75 (180)
|+.+|.++++.++ .|+++++|||||.++++||+|.|++++........ ...... ...+...+.++||||||+|||
T Consensus 53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG 132 (550)
T PRK08184 53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG 132 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999999999 78999999999986789999999998754221111 111111 122445678899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCC--eEEeCcccc-ccccCCcchhhhhh--hhcCHHHHHHHHhcCCCCCHHHHHhcCccce
Q 030277 76 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~--~~~~~~e~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~ 150 (180)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++++++ +++|..++++++++|++++++||+++||||+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~ 212 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDE 212 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccE
Confidence 999999999999999999987 899999997 99999999898888 6799999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHHHHHhccCHH
Q 030277 151 YVPAGQAQLKALEIAQEINQKVQS 174 (180)
Q Consensus 151 v~~~~~~~~~a~~~a~~~~~~~~~ 174 (180)
++|++++.+++.+++++|+.++|.
T Consensus 213 vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 213 VVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred eeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998874
No 87
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-37 Score=233.69 Aligned_cols=179 Identities=20% Similarity=0.367 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-------HHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-------IHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
|+.++.++|+.+..|+++..++++|. |++||+|.|+..+....... ...+...+..+.+.+.++|||+||.|
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 57899999999999999988999887 89999999998876543221 22223344457888999999999999
Q ss_pred CCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 74 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 74 ~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
||+++|.|+.+...||+++++|+++|..|+.++|+.|+++.++.++++||...|.|+++.|++++|+||++.|||++++|
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 154 AGQAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 154 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
++++.++++.-++++++.+|.+++..|
T Consensus 195 ~~tf~~~v~~~ikq~s~l~p~sl~~~K 221 (266)
T KOG0016|consen 195 AETFNEEVLKKIKQYSKLSPESLLGMK 221 (266)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999998766
No 88
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=4.6e-37 Score=268.99 Aligned_cols=169 Identities=34% Similarity=0.598 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhhcCCCceEE-EEEeCCCCceEecCCccccccC-ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
|+.+|.++++.++.|++++++ |+||. +++||+|.|++++... +..+...+....++++.++.++||||||+|||+|+
T Consensus 42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~ 120 (737)
T TIGR02441 42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL 120 (737)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 578999999999999999965 56887 7899999999988642 22333444556678889999999999999999999
Q ss_pred hhhHHHHhhCCEEEEcCC--eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC--
Q 030277 79 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 154 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~--~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~-- 154 (180)
|+|++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+++|+
T Consensus 121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~ 200 (737)
T TIGR02441 121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLG 200 (737)
T ss_pred cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcc
Confidence 999999999999999988 5899999999999999999999999999999999999999999999999999999986
Q ss_pred -----------chHHHHHHHHHHHHhc
Q 030277 155 -----------GQAQLKALEIAQEINQ 170 (180)
Q Consensus 155 -----------~~~~~~a~~~a~~~~~ 170 (180)
+++.+.+..++++++.
T Consensus 201 ~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 201 PGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhhc
Confidence 4467777777777654
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-34 Score=212.55 Aligned_cols=177 Identities=28% Similarity=0.515 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC--CCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 75 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G 75 (180)
..||.++|..+..|++|.+|||||. |++.||+|.|-+.-... +.+.... -...++-+.|..+||||||.|+|
T Consensus 48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G 125 (282)
T COG0447 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG 125 (282)
T ss_pred HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence 5789999999999999999999975 79999999998654331 1111110 12234566788899999999999
Q ss_pred ccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 76 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 76 ~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+++|||-.|-+.||..|++++++|+....+.|-+-++.++.+|.|.+|..+|+|+...++.++|+||+++||||.|+|.+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030277 156 QAQLKALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~~~~a~~~~K 180 (180)
+++++..++++++.+++|.++++.|
T Consensus 206 ~LE~e~v~W~~E~l~kSP~AlR~LK 230 (282)
T COG0447 206 DLEKETVQWAREMLAKSPTALRMLK 230 (282)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999987
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.98 E-value=2.9e-32 Score=199.85 Aligned_cols=178 Identities=26% Similarity=0.408 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
|+.+|++.|..-..+.++|.|||+.. |+.||+|.|++++.+.+... ..+.++...+.+..|.++|+|+|+-|||++..
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA 138 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA 138 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence 68889999988888899999999998 89999999999998765443 33455666788899999999999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
+||.|+.+||+++++++++|..|..+.|++-+.- ...+.|.+++..+.+|++||+|++++||+..||++++||+++++.
T Consensus 139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTP-GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~ 217 (287)
T KOG1682|consen 139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTP-GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDK 217 (287)
T ss_pred ccceEEEeeeEEEEecCccccCCCCceeeEecCc-chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHH
Confidence 9999999999999999999999999999963332 236889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030277 160 KALEIAQEINQKVQSVFRILL 180 (180)
Q Consensus 160 ~a~~~a~~~~~~~~~a~~~~K 180 (180)
++.++...|..+++..+.+-|
T Consensus 218 e~~~i~~~i~~~srav~slgk 238 (287)
T KOG1682|consen 218 EIEEITNAIKAKSRAVISLGK 238 (287)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999988876644
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=5.1e-30 Score=201.72 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccC----ChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
|+..+...|..++.++.+++||+.|+++++||+|.|+...... .......+++..+.+...+.++.||.||.++|.
T Consensus 66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 6778888999999999999999999999999999998755432 233567788888999999999999999999999
Q ss_pred cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 77 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 77 ~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
++|||+.|+..--|||+++++.|.+||..+|++|+.|++++++|+.| ..+.++.|||+++++.|++..||.+|.||.++
T Consensus 146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~ 224 (401)
T KOG1684|consen 146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEK 224 (401)
T ss_pred eecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999988 78999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030277 157 AQLKALEIAQEINQKVQSVF 176 (180)
Q Consensus 157 ~~~~a~~~a~~~~~~~~~a~ 176 (180)
+-.--.++...+..-|...+
T Consensus 225 l~~Lee~L~~~l~~dp~~~I 244 (401)
T KOG1684|consen 225 LPSLEERLLKNLNDDPQSVI 244 (401)
T ss_pred hhHHHHHHhhhcCCCcHHHH
Confidence 75444444445554443433
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.91 E-value=7.2e-24 Score=157.29 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.+|.++++.+++|+++++|||++ +|.|.|+... ..+++++..+.+++||+||+++|.|.|+|
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~g 86 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASGG 86 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHHH
Confidence 578999999999999999999987 4778776431 23456777888899999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhh--------hhhhhcC--HHHHHHHHhcCCCCCHHHHHhcCcccee
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ--------RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYY 151 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~--------~l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v 151 (180)
+.++++||++++++++.|+.+.+..+..+...... .+++..| ....++++..|.++++++|++.||||++
T Consensus 87 ~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v 166 (177)
T cd07014 87 YWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSL 166 (177)
T ss_pred HHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccC
Confidence 99999999999999999999987666433222222 3444444 7788899999999999999999999999
Q ss_pred cCCchHHHH
Q 030277 152 VPAGQAQLK 160 (180)
Q Consensus 152 ~~~~~~~~~ 160 (180)
.+.+++.++
T Consensus 167 ~~~~e~~~~ 175 (177)
T cd07014 167 GSFDDAVAK 175 (177)
T ss_pred CCHHHHHHH
Confidence 987776543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.88 E-value=8.8e-22 Score=147.26 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccch
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~g 79 (180)
..+.+.|+.++.++ ++.|+|.=. |.|.++. .-..++..+..+|||||++++ |+|.|
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~---------------~~~~i~~~l~~~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLLD---------------STREIVQAILASPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHH---------------HHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence 46788899888665 677777633 2233331 122456667789999999999 99999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccCCc--------------chhhhhhhhcCH--HHHHHHHhcCCCCCHHHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIPGA--------------GGTQRLPRLVGK--SVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~~a~ea~ 143 (180)
+|+.++++||+++++++++|+.+++..+..+.. .....+.+..|. ..+++++++|+.++++||+
T Consensus 75 gG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~ 154 (187)
T cd07020 75 AGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEAL 154 (187)
T ss_pred HHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHH
Confidence 999999999999999999999999985544332 235567888887 6889999999999999999
Q ss_pred hcCccceecCCc-hHHHH
Q 030277 144 SLGLVNYYVPAG-QAQLK 160 (180)
Q Consensus 144 ~~Glv~~v~~~~-~~~~~ 160 (180)
++||||++++++ ++.++
T Consensus 155 ~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 155 KLGVIDLIAADLNELLKK 172 (187)
T ss_pred HcCCcccccCCHHHHHHH
Confidence 999999999886 56544
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.80 E-value=4.9e-19 Score=134.82 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.+|.++|+.++.||++++|||+ .||.|.|+..+ ..+++.+..+..++||+|++++|.|.|+|
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~------------~~~~~~l~~~~~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS------------EVIRAELAAARAAGKPVVVSAGGAAASGG 85 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence 67899999999999999999997 58999998553 23345667788899999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccc------------cccccCC---c-chh-------------hhhh-------------
Q 030277 82 LEMALACDLRICGEAALLGLPET------------GLAIIPG---A-GGT-------------QRLP------------- 119 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~---~-~~~-------------~~l~------------- 119 (180)
+.|+++||.+++++++.++...+ ++|+-+. . +.. ..+.
T Consensus 86 y~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~ 165 (211)
T cd07019 86 YWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITL 165 (211)
T ss_pred HHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988864332 2333111 1 000 0000
Q ss_pred ----hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHH
Q 030277 120 ----RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 159 (180)
Q Consensus 120 ----~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~ 159 (180)
|.+.+.. .+-+..|..+++++|++.||||++..-++..+
T Consensus 166 Va~~R~~~~~~-l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 166 VADARHSTPEQ-IDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred HHhhCCCCHHH-HHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 0111221 22245688999999999999999976555443
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.73 E-value=8.4e-17 Score=117.52 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.+.|+.++.|++++.|+|... |.|.|+.. ..++...+..++||||+.++|.|.++
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence 46889999999999999999999764 55665422 23455566778899999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccccccccCCc--ch-----------hhhhh------hhcCHHHHHHHHhcCCCCCHHH
Q 030277 81 GLEMALACDLRICGEAALLGLPETGLAIIPGA--GG-----------TQRLP------RLVGKSVAKDIIFTGRKVSGKD 141 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--~~-----------~~~l~------~~~g~~~a~~l~l~g~~~~a~e 141 (180)
|+.|+++||.|++.+++.|+++.+..+..... .. ...+. +.+......+.+..+..++++|
T Consensus 72 g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~e 151 (161)
T cd00394 72 GYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQE 151 (161)
T ss_pred HHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHH
Confidence 99999999999999999999988865543221 00 01111 1123445677788899999999
Q ss_pred HHhcCcccee
Q 030277 142 AMSLGLVNYY 151 (180)
Q Consensus 142 a~~~Glv~~v 151 (180)
|+++||||++
T Consensus 152 A~~~GLvD~i 161 (161)
T cd00394 152 ALEYGLVDAL 161 (161)
T ss_pred HHHcCCcCcC
Confidence 9999999985
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.72 E-value=3.5e-17 Score=140.83 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=117.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++|++|||+-.. .|.+... .+.+++.+.++...+||+|+.++|.|.++|+
T Consensus 332 ~~~~~~l~~a~~D~~VkaIVLrinS-----pGGs~~a------------se~i~~~i~~~~~~gKPVva~~~g~aaSggY 394 (584)
T TIGR00705 332 DTVAALLRVARSDPDIKAVVLRINS-----PGGSVFA------------SEIIRRELARAQARGKPVIVSMGAMAASGGY 394 (584)
T ss_pred HHHHHHHHHHhhCCCceEEEEEecC-----CCCCHHH------------HHHHHHHHHHHHhCCCcEEEEECCccccHHH
Confidence 5678899999999999999999752 2322110 1334455666777889999999999999999
Q ss_pred HHHhhCCEEEEcCCeEE------eCcc------ccccccCCcchhhhhhh----------------------------hc
Q 030277 83 EMALACDLRICGEAALL------GLPE------TGLAIIPGAGGTQRLPR----------------------------LV 122 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~------~~~e------~~~G~~p~~~~~~~l~~----------------------------~~ 122 (180)
.++++||.+++++.+.+ +.+. .++|+.|+...+..+.+ .+
T Consensus 395 ~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~V 474 (584)
T TIGR00705 395 WIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVV 474 (584)
T ss_pred HHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 4443 47888877665554443 44
Q ss_pred CHHH-----HHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc-CHHHH
Q 030277 123 GKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVF 176 (180)
Q Consensus 123 g~~~-----a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~ 176 (180)
+..+ ..+.+.+|+.++++||+++||||++. .+ +++.+.|++++.. ++..+
T Consensus 475 a~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~~v 530 (584)
T TIGR00705 475 SAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQWSV 530 (584)
T ss_pred HhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCceE
Confidence 4444 66788899999999999999999993 34 7788888888887 54443
No 97
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.72 E-value=1.2e-16 Score=121.49 Aligned_cols=140 Identities=23% Similarity=0.276 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.++.|+++++|+|++. |.|.|+... ..+.+.+..+..++||+||+++|.|.|+
T Consensus 18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~~~~~kpvia~v~g~~~s~ 80 (208)
T cd07023 18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRLRKAKKPVVASMGDVAASG 80 (208)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEECCcchhH
Confidence 57889999999999999999999884 678877441 2345567778888999999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcchh------------------hhhhhhcC-------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAGGT------------------QRLPRLVG------- 123 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~------------------~~l~~~~g------- 123 (180)
|+.++++||.+++++.+.|+...+ ++|+-+..... ..+.+.+.
T Consensus 81 g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865333 23332221110 00000011
Q ss_pred ----------HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 124 ----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 124 ----------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
.... +-+..|..+++++|++.||||++...++..
T Consensus 161 ~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 161 DVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 1112 235678899999999999999997544443
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.72 E-value=1.4e-16 Score=121.52 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.++.|+++++|||+.. |.|.++.. ...+.+.+..+.. +|||||+++|.|.|+
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~------------~~~l~~~l~~~~~-~KpViA~v~g~a~s~ 87 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG------------VFELADAIRAARA-GKPIVAFVNGLAASA 87 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH------------HHHHHHHHHHHhc-CCCEEEEECCchhhH
Confidence 46899999999999999999999763 44554322 1233444555555 799999999999999
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcchh--------------h----hhh-----------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAGGT--------------Q----RLP----------- 119 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~--------------~----~l~----------- 119 (180)
|+.++++||.+++++.+.|+...+ ++|+-+..... . .+.
T Consensus 88 gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~ 167 (214)
T cd07022 88 AYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFV 167 (214)
T ss_pred HHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865433 23332111000 0 000
Q ss_pred ------hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHH
Q 030277 120 ------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 158 (180)
Q Consensus 120 ------~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~ 158 (180)
|.+.....+++. |+.+++++|++.||||++...+++.
T Consensus 168 ~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 168 AAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 111133334444 9999999999999999998655544
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.69 E-value=6.6e-16 Score=112.75 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+++.+.|+.++.+..+ .+.|.+.||. + .....+...+..++||+++.++|.|.|+|
T Consensus 17 ~~~~~~~l~~~~~~~~i-~l~inspGG~-------~---------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g 73 (160)
T cd07016 17 AKEFKDALDALGDDSDI-TVRINSPGGD-------V---------------FAGLAIYNALKRHKGKVTVKIDGLAASAA 73 (160)
T ss_pred HHHHHHHHHhccCCCCE-EEEEECCCCC-------H---------------HHHHHHHHHHHhcCCCEEEEEcchHHhHH
Confidence 46788899998877443 4555555332 1 11234666777889999999999999999
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcc---------------hhhhhhhhcC--HHHHHHHHhcCCCCCHHHHHh
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDAMS 144 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~ea~~ 144 (180)
+.++++||.|++++++.|++++...+..+... ....+.+..| .....+++..+..++++||++
T Consensus 74 ~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~ 153 (160)
T cd07016 74 SVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVE 153 (160)
T ss_pred HHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHH
Confidence 99999999999999999999887766544322 2233667777 677788888888999999999
Q ss_pred cCcccee
Q 030277 145 LGLVNYY 151 (180)
Q Consensus 145 ~Glv~~v 151 (180)
+||||++
T Consensus 154 ~GliD~v 160 (160)
T cd07016 154 LGFADEI 160 (160)
T ss_pred cCCCCcC
Confidence 9999985
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.67 E-value=1.6e-15 Score=115.22 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCC--CcEEEEECCccch
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALG 79 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~Ia~v~G~~~g 79 (180)
..+|.++|+.++.|+++++|||+.. |.|.++.. ..++...+.+++ ||+|+.++|.|.+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHHHHhcCCCCEEEEECCccch
Confidence 4688999999999999999999885 55665532 133444555555 9999999999999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccc------------cccccCC------------cc--hh----hhh-----------
Q 030277 80 GGLEMALACDLRICGEAALLGLPET------------GLAIIPG------------AG--GT----QRL----------- 118 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~------------~~--~~----~~l----------- 118 (180)
+|+.++++||.+++++++.++...+ ++|+-+. .. .+ ..+
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f 154 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQF 154 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765333 2333210 00 00 001
Q ss_pred ------hhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 119 ------PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 119 ------~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
.|.+......+ +..++.+++++|++.||||++...+++.+...+
T Consensus 155 ~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 155 VQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred HHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 01122333333 467889999999999999999866666555443
No 101
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.61 E-value=6e-15 Score=113.19 Aligned_cols=141 Identities=21% Similarity=0.155 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchh
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
++.+|.++|+.+..|++|++|||+.. +..| ++.+. +.+++.+..+...+|||||.++| +.++
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~---------------~el~~~i~~~~~~~kpVia~~~~-~~sg 91 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKL---------------EELRQALERFRASGKPVIAYADG-YSQG 91 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHH---------------HHHHHHHHHHHHhCCeEEEEeCC-CCch
Confidence 36789999999999999999999997 4444 33322 23455666677789999999998 8899
Q ss_pred hHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcc--------hhhhh------------h---------
Q 030277 81 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAG--------GTQRL------------P--------- 119 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~--------~~~~l------------~--------- 119 (180)
|+.++++||.+++.+.+.++...+ ++|+-+... ...+. .
T Consensus 92 gy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~ 171 (222)
T cd07018 92 QYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ 171 (222)
T ss_pred hhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543 233322100 00000 0
Q ss_pred --------hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHH
Q 030277 120 --------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 160 (180)
Q Consensus 120 --------~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~ 160 (180)
|.+......+ +..|+.+++++|++.||||++...+++.+.
T Consensus 172 f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 172 YLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1111222222 345999999999999999999866666544
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.50 E-value=7.9e-13 Score=97.95 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
..|.++|+.+++++ ++.|++.=. |.|.++ .....+...+..+++|+|+.|+|.|.++|+
T Consensus 16 ~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v---------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~ 74 (178)
T cd07021 16 AFVERALKEAKEEG-ADAVVLDID-----TPGGRV---------------DSALEIVDLILNSPIPTIAYVNDRAASAGA 74 (178)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCH---------------HHHHHHHHHHHhCCCCEEEEECCchHHHHH
Confidence 45788899998886 566666554 223322 234566778888999999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCc--------ch---hhhhhhhcC--HHHHHHHHhcC-------------CC
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGA--------GG---TQRLPRLVG--KSVAKDIIFTG-------------RK 136 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~--------~~---~~~l~~~~g--~~~a~~l~l~g-------------~~ 136 (180)
.++++||++++++++.++.+++-.+- +.. .. ...+.+.-| ...+..++... ..
T Consensus 75 ~ia~a~d~i~m~p~a~iG~~~~v~~~-~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~ 153 (178)
T cd07021 75 LIALAADEIYMAPGATIGAAEPIPGD-GNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLT 153 (178)
T ss_pred HHHHhCCeEEECCCCeEecCeeEcCC-CccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceee
Confidence 99999999999999999988663221 110 00 011222222 44455665544 37
Q ss_pred CCHHHHHhcCccceecCC-chH
Q 030277 137 VSGKDAMSLGLVNYYVPA-GQA 157 (180)
Q Consensus 137 ~~a~ea~~~Glv~~v~~~-~~~ 157 (180)
++++||++.|++|.+.++ +++
T Consensus 154 lta~eA~~~g~~d~ia~~~~~l 175 (178)
T cd07021 154 LTADEALKVGYAEGIAGSLDEL 175 (178)
T ss_pred eCHHHHHHhCCeEEEECCHHHH
Confidence 999999999999999875 444
No 103
>PRK10949 protease 4; Provisional
Probab=99.30 E-value=4.6e-11 Score=103.47 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++||+|||+-..+ |... .. .+.+++.+.++....||+|+.+.+.|..||+
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~--------~a----se~i~~~i~~~r~~gKPVvas~~~~aASggY 412 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSV--------TA----SEVIRAELAAARAAGKPVVVSMGGMAASGGY 412 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcH--------HH----HHHHHHHHHHHHhcCCcEEEEECCCCccHHH
Confidence 46788999999999999999988732 3211 11 2344555666667889999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccc------------cccccCCcchhhhh-----------------h--------------
Q 030277 83 EMALACDLRICGEAALLGLPET------------GLAIIPGAGGTQRL-----------------P-------------- 119 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~~~~l-----------------~-------------- 119 (180)
.++++||.+++.+.+..+.-.+ ++|+-.....+..+ .
T Consensus 413 ~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~V 492 (618)
T PRK10949 413 WISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLV 492 (618)
T ss_pred HHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876554322 24432221111000 0
Q ss_pred ---hhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 120 ---RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 120 ---~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
|.+...... -+..|+.+++++|++.||||++-..++..+.+.
T Consensus 493 a~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~ 537 (618)
T PRK10949 493 ADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAA 537 (618)
T ss_pred HhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCCHHHHHHHHH
Confidence 111233332 356899999999999999999965444443333
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.25 E-value=2e-10 Score=84.50 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccch
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~g 79 (180)
..|.+.++.++.+ ..+.|+|.=. |.|.++. ....+...+...++||++.++ |.|.+
T Consensus 16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~---------------~~~~I~~~i~~~~~pvv~~v~p~g~~AaS 74 (172)
T cd07015 16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AAGNIVQRIQQSKIPVIIYVYPPGASAAS 74 (172)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCcCEEEEEecCCCeehh
Confidence 4577888888765 5677777554 3344332 123455666778999999999 99999
Q ss_pred hhHHHHhhCCEEEEcCCeEEeCccccccccC-------Cc----chh---hhhhhhcC--HHHHHHHHhcCCCCCHHHHH
Q 030277 80 GGLEMALACDLRICGEAALLGLPETGLAIIP-------GA----GGT---QRLPRLVG--KSVAKDIIFTGRKVSGKDAM 143 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p-------~~----~~~---~~l~~~~g--~~~a~~l~l~g~~~~a~ea~ 143 (180)
+|+.++++||.+++.+++.++...+-.+..+ +. ... ..+.+.-| ...+..++.....++++||+
T Consensus 75 ag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~ 154 (172)
T cd07015 75 AGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEAL 154 (172)
T ss_pred HHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHH
Confidence 9999999999999999999998887543211 00 000 11222223 45667777788899999999
Q ss_pred hcCccceecCC
Q 030277 144 SLGLVNYYVPA 154 (180)
Q Consensus 144 ~~Glv~~v~~~ 154 (180)
++|+||.+.++
T Consensus 155 ~~G~iD~ia~~ 165 (172)
T cd07015 155 KYGVIEVVARD 165 (172)
T ss_pred HcCCceeeeCC
Confidence 99999999976
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.21 E-value=2.7e-10 Score=83.29 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.+++.+.|..++.++..+.|+|.=. |.|.++ ..-..++..+...++|+++.+.|.|.++|
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGLAASMG 73 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEeehhhHH
Confidence 4577888999998877676666543 334332 12234566666788999999999999999
Q ss_pred HHHHhhCC--EEEEcCCeEEeCccccccccCCcc---------------hhhhhhhh--cCHHHHHHHHhcCCCCCHHHH
Q 030277 82 LEMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 82 ~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~ea 142 (180)
..+++++| .|++.+++.+.+....-+...... ....+.+. .......+++-.+..++++||
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA 153 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREA 153 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHH
Confidence 99999999 688889999887654322211100 00112222 225555666667778899999
Q ss_pred HhcCcccee
Q 030277 143 MSLGLVNYY 151 (180)
Q Consensus 143 ~~~Glv~~v 151 (180)
+++||||++
T Consensus 154 ~~~GliD~i 162 (162)
T cd07013 154 VEYGFADTI 162 (162)
T ss_pred HHcCCCCcC
Confidence 999999985
No 106
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.12 E-value=9.6e-10 Score=88.55 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.|+.+..|++++.|+|.=. |.|..... .+.+.+.++++..-+ |+++.|++.|..||+
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGGY 144 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA------------SELIARALKRLRAKK-PVVVSVGGYAASGGY 144 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH------------HHHHHHHHHHHhhcC-CEEEEECCeecchhh
Confidence 567888999999999999999775 33432211 234455666666655 999999999999999
Q ss_pred HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC---------------------------------------
Q 030277 83 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG--------------------------------------- 123 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g--------------------------------------- 123 (180)
.++++||.++|++.+..|--.+..+. |+ ...+-++.|
T Consensus 145 ~IA~aAd~I~a~p~si~GSIGVi~~~-~~---~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 145 YIALAADKIVADPSSITGSIGVISGA-PN---FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred hhhccCCEEEecCCceeeeceeEEec-CC---HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865554331 21 222333333
Q ss_pred -----------HHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 124 -----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 124 -----------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
......-+.+|+-+++++|++.||||++...++....+.+
T Consensus 221 F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~ 271 (317)
T COG0616 221 FVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAE 271 (317)
T ss_pred HHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHH
Confidence 1111345678999999999999999999755444444333
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.02 E-value=3.1e-11 Score=96.67 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.++|..-++.++.+..+++.++|+...+.|++|.|..+..-........++..+++++.+.++++.|+.+++||++.-++
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 46777888888888888999999988999999999999877666666667888999999999999999999999998888
Q ss_pred --HHHHhhCCEEEEc--CCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCC--c
Q 030277 82 --LEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA--G 155 (180)
Q Consensus 82 --~~l~~~~D~~i~~--~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~--~ 155 (180)
+.+.-+|+|++.. +.-..+..+...++..+-.-.-.+...+|...+-..+--+.-++-.|+.+-|+++++.|. +
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~e 243 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEE 243 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHH
Confidence 8999999999988 444457788877754333345556666787777777888889999999999999999984 5
Q ss_pred hHHHHHHHHHHHHhcc
Q 030277 156 QAQLKALEIAQEINQK 171 (180)
Q Consensus 156 ~~~~~a~~~a~~~~~~ 171 (180)
++.+..+...+.....
T Consensus 244 el~~~~~~g~kT~kg~ 259 (380)
T KOG1683|consen 244 ELLEKGRAGIKTGKGI 259 (380)
T ss_pred HHHHHHhhhhhccCcc
Confidence 5666555555444433
No 108
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.98 E-value=5.2e-09 Score=77.18 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
..++...|..++.++..+.|++.=. |.|.|+. ....++..+...+.|+++.+.|.|.++|
T Consensus 23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~---------------~~~~i~~~l~~~~~~v~t~~~g~aaS~~ 82 (171)
T cd07017 23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVT---------------AGLAIYDTMQYIKPPVSTICLGLAASMG 82 (171)
T ss_pred HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEEEeEehhHH
Confidence 3567888888887765454444332 2233331 1234455556678999999999999999
Q ss_pred HHHHhhCC--EEEEcCCeEEeCccccccccCCcc---------------hhhhhhhhcC--HHHHHHHHhcCCCCCHHHH
Q 030277 82 LEMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 82 ~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~ea 142 (180)
..+++++| .|++.+++.|.+.+...+...... ....+.+..| .....+++.....++++||
T Consensus 83 ~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA 162 (171)
T cd07017 83 ALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162 (171)
T ss_pred HHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence 99999999 799999999999887655432210 0111222222 3455566668889999999
Q ss_pred HhcCcccee
Q 030277 143 MSLGLVNYY 151 (180)
Q Consensus 143 ~~~Glv~~v 151 (180)
+++||||+|
T Consensus 163 ~e~GiiD~V 171 (171)
T cd07017 163 KEYGLIDKI 171 (171)
T ss_pred HHcCCCccC
Confidence 999999986
No 109
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.95 E-value=1.3e-08 Score=81.77 Aligned_cols=104 Identities=24% Similarity=0.282 Sum_probs=70.5
Q ss_pred HHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccc------------cccccCCcch------------
Q 030277 59 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET------------GLAIIPGAGG------------ 114 (180)
Q Consensus 59 ~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~------------~~G~~p~~~~------------ 114 (180)
+.++...+||+++.+.+.|..+|+.++++||.+++.|.+.++...+ ++|+-+....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 4556678899999999999999999999999999999988775444 1222110000
Q ss_pred --h----hhhhhhcC-----------HH---HHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 115 --T----QRLPRLVG-----------KS---VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 115 --~----~~l~~~~g-----------~~---~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
+ ..+...+. .. .-.+-+.+|+.+++++|++.||||++...+++..++.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 0 00000000 11 1123456899999999999999999987776655443
No 110
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.95 E-value=1.4e-08 Score=77.05 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCCceEE--EEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 2 LRGLKHAFETISEDSSANVV--MIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~v--vl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
.+++.+.|..++.++..+.| .|.+. |.++ .....++..+..++.|+++.+.|.|.+
T Consensus 49 ~~~i~~~L~~l~~~~~~~~I~l~INSp-------GG~v---------------~~g~~I~d~i~~~~~~v~t~~~G~aaS 106 (207)
T PRK12553 49 ANDVMAQLLVLESIDPDRDITLYINSP-------GGSV---------------TAGDAIYDTIQFIRPDVQTVCTGQAAS 106 (207)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeCC-------CCcH---------------HHHHHHHHHHHhcCCCcEEEEEeehhh
Confidence 35677888888865433333 33443 3332 122345666777788999999999999
Q ss_pred hhHHHHhhCC--EEEEcCCeEEeCccccc-c-ccCCc---------------chhhhhhhhcC--HHHHHHHHhcCCCCC
Q 030277 80 GGLEMALACD--LRICGEAALLGLPETGL-A-IIPGA---------------GGTQRLPRLVG--KSVAKDIIFTGRKVS 138 (180)
Q Consensus 80 ~G~~l~~~~D--~~i~~~~~~~~~~e~~~-G-~~p~~---------------~~~~~l~~~~g--~~~a~~l~l~g~~~~ 138 (180)
.|..++++|| .|++.+++.|.+.+... | ..... .....+.+..| .....+++-.+..++
T Consensus 107 aa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lt 186 (207)
T PRK12553 107 AGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLT 186 (207)
T ss_pred HHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccc
Confidence 9999999999 59999999999988753 2 11100 00122333333 455566777889999
Q ss_pred HHHHHhcCccceecCC
Q 030277 139 GKDAMSLGLVNYYVPA 154 (180)
Q Consensus 139 a~ea~~~Glv~~v~~~ 154 (180)
|+||+++||||+++++
T Consensus 187 a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 187 AEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHcCCccEEcCc
Confidence 9999999999999975
No 111
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.93 E-value=2.9e-08 Score=75.02 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcch---------------hhhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGG---------------TQRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l~ 119 (180)
.++..+...+.|+++.+.|.|.+.|..++++++ .|++.+++.+.+.+..-+......- ...+.
T Consensus 80 ~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a 159 (200)
T PRK00277 80 AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILA 159 (200)
T ss_pred HHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667889999999999999999998764 6999999999887764332111100 01233
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+..| .....+++.....++|+||+++||||+|++.
T Consensus 160 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 160 EHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 3333 4555566667889999999999999999965
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.88 E-value=4.3e-08 Score=73.83 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcch---------------hhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l 118 (180)
..++..+..++.||++.+.|.|.+.|..++++||. |++.+++.+.+....-+......- ...+
T Consensus 71 ~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~ 150 (197)
T PRK14512 71 FAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDII 150 (197)
T ss_pred HHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677789999999999999999999999985 999999998777664333221110 0112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+..| .....+++.....++++||+++||||+|++.
T Consensus 151 a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 151 AKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred HHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 22222 3445566666779999999999999999975
No 113
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.87 E-value=7.5e-09 Score=77.02 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcch---------------hhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~---------------~~~l 118 (180)
..+...+..++.|+++.+.|.|.+.|..+.++||. |++.+++.|.+.+...+......- ...+
T Consensus 64 ~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~ 143 (182)
T PF00574_consen 64 LAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIY 143 (182)
T ss_dssp HHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999999999 899999999999886655331111 0112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
.+..| .....+++-....++++||+++||||+|+..
T Consensus 144 ~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 144 AERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 22222 3344455555668899999999999999853
No 114
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.81 E-value=9.2e-08 Score=72.14 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccc-cCCcch---------------hhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGAGG---------------TQR 117 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~-~p~~~~---------------~~~ 117 (180)
..++..+...+.|+...+-|.|.+.|..+++++| .|++.+++.+.+.+...|+ .....- ...
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV 157 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667778899999999999999999999999 6999999999998876552 211100 112
Q ss_pred hhhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 118 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 118 l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
+.+..| .....+.+.....++|+||+++||||+|+++.
T Consensus 158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 222223 34445666677799999999999999999653
No 115
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.78 E-value=2e-07 Score=80.92 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.++.++|+.+..|+.|++|||.-.+ +.|.++. ..+++++.+..+....|||+|..++.+ .+|
T Consensus 78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~------------~~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~ 140 (584)
T TIGR00705 78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSP------------HLVEIGSALSEFKDSGKPVYAYGTNYS-QGQ 140 (584)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHH------------HHHHHHHHHHHHHhcCCeEEEEEcccc-chh
Confidence 56899999999999999999998752 1132221 134566677777788999999888765 678
Q ss_pred HHHHhhCCEEEEcCCeEEeCc
Q 030277 82 LEMALACDLRICGEAALLGLP 102 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~ 102 (180)
+.++++||-+++.|.+.+++.
T Consensus 141 YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 141 YYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred hhhhhhCCEEEECCCceEEee
Confidence 999999999999999887553
No 116
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.77 E-value=1.4e-07 Score=73.56 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+...++|+|+.+-|.|.|+|......||++++.+++.++.- -|.+.+...+...--...+.+.
T Consensus 122 ~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~- 194 (256)
T PRK12319 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAEL- 194 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHH-
Confidence 455666777778899999999999999998888889999999999887742 2333333333322111222222
Q ss_pred hcCCCCCHHHHHhcCccceecCCc---------hHHHHHHHHHHHHhccCHHHHH
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVPAG---------QAQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~~~---------~~~~~a~~~a~~~~~~~~~a~~ 177 (180)
.++++.++.+.|+||+|+|.. .+.+...+...++...++..+.
T Consensus 195 ---~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (256)
T PRK12319 195 ---MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLL 246 (256)
T ss_pred ---cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 277999999999999999732 1223344455556666666553
No 117
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.77 E-value=6.3e-07 Score=71.70 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.|.|||.-....||++++.+++.++. +-|.+.++..+.. ..++.+.
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~a- 247 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLDA- 247 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHHH-
Confidence 34555666677889999999999999888866666799999999998873 2345545444443 3333333
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
....+++++++++.|+||+|+|
T Consensus 248 A~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 248 AEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred HHHcCCCHHHHHhCCCCeEecc
Confidence 3456899999999999999997
No 118
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.77 E-value=2e-07 Score=69.88 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=68.4
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCC--EEEEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D--~~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
.++..+...+.|+...+-|.|.+.|..+++++| .|++.+++.+.+.+..-|......-. ..+.
T Consensus 75 ~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya 154 (191)
T TIGR00493 75 AIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILA 154 (191)
T ss_pred HHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777788999999998888766 69999999999987754332111111 1133
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
++.| .....+++..+..++|+||+++||||+++.
T Consensus 155 ~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 155 NHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 3333 455566677788999999999999999974
No 119
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.71 E-value=2.4e-08 Score=72.44 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=62.8
Q ss_pred HhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCcccc------------ccccC---------Ccc-----hh
Q 030277 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG------------LAIIP---------GAG-----GT 115 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~------------~G~~p---------~~~-----~~ 115 (180)
+.+..||++|.+++.+..+++.++++||-+++.+.+.++...+. +|+-+ ..+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 45689999999999999999999999999999999988765542 23211 000 00
Q ss_pred ----hhhhhhcC-----------HHH-----HHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHHH
Q 030277 116 ----QRLPRLVG-----------KSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 163 (180)
Q Consensus 116 ----~~l~~~~g-----------~~~-----a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~ 163 (180)
..+.+.+. ..+ ..+-+..|..+++++|++.||||++...+++.+.+.+
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~ 149 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHH
Confidence 00000000 111 1122568899999999999999999766666555443
No 120
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.69 E-value=5e-07 Score=67.93 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcc---------------hhhhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l~ 119 (180)
.++..+...+-||...+-|.|.+.|..+++++|. |++.+++.+......-|...... ....+.
T Consensus 74 aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya 153 (196)
T PRK12551 74 GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELS 153 (196)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778899999999999999999999985 89999999988887533221110 011122
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
++.| .....+.+..-..++|+||+++||||+|++..
T Consensus 154 ~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 154 ERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 3333 33445566667789999999999999999754
No 121
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.67 E-value=5.9e-07 Score=68.61 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=72.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
.++..+...+-||...+-|.|.+.|..|++++|. |++.+++.+.+....-|......-. ..+.
T Consensus 103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya 182 (221)
T PRK14514 103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA 182 (221)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999996 9999999999888754432221100 1122
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 120 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 120 ~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+..| .....+.+.....++|+||+++||||+|++.
T Consensus 183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 2223 3444556667789999999999999999853
No 122
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.66 E-value=4.7e-07 Score=74.36 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.+.+||......||+++|.+++.++. +-|.+.++..+....-...+.+
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe-- 316 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE-- 316 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH--
Confidence 44556667778899999999999999666655556789999999987663 2244545544443322222222
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
..+++++++++.|+||+|+|
T Consensus 317 --alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 317 --ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred --HcCCCHHHHHhCCCCeEecc
Confidence 44899999999999999997
No 123
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.65 E-value=5.6e-07 Score=71.96 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|+.|-|.|.|||..-...||++++.+++.++. +.|.+.++..+... ..+.+..
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~---~~a~~aa 245 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA---SKAPKAA 245 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch---hhHHHHH
Confidence 44556667777889999999999999888876556799999999998773 22444444334332 2222222
Q ss_pred hcCCCCCHHHHHhcCccceecCCc------h-------HHHHHHHHHHHHhccCHHHHH
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVPAG------Q-------AQLKALEIAQEINQKVQSVFR 177 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~~~------~-------~~~~a~~~a~~~~~~~~~a~~ 177 (180)
- -.++++.++.+.|+||.|+|.. + +.+...+...++.+.++..+.
T Consensus 246 e-~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 303 (316)
T TIGR00513 246 E-AMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELK 303 (316)
T ss_pred H-HccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 3678899999999999999721 1 223334445556666665543
No 124
>PRK10949 protease 4; Provisional
Probab=98.63 E-value=1.1e-06 Score=76.60 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
+.++.++|+.+.+|+.|++|||.-.+.. |... . ..+++++.+..+....||++|. ...+--++
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~--------a----~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~ 159 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ--------P----SMQYIGKALREFRDSGKPVYAV-GDSYSQGQ 159 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH--------H----HHHHHHHHHHHHHHhCCeEEEE-ecCccchh
Confidence 4678999999999999999999886211 1111 1 1345667777788889999985 44445678
Q ss_pred HHHHhhCCEEEEcCCeEEeCcc
Q 030277 82 LEMALACDLRICGEAALLGLPE 103 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e 103 (180)
+-|+.+||-+++.|.+.+++..
T Consensus 160 YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 160 YYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred hhhhhhCCEEEECCCceEEEee
Confidence 9999999999999998776543
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.61 E-value=1.2e-06 Score=66.06 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcc---------------hhhhh
Q 030277 56 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRL 118 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~---------------~~~~l 118 (180)
..++..+...+-||...+-|.|.+.|..+++++|- |++.+++.+-++...-|...... ....+
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iy 154 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIY 154 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788899999999999999999999996 99999999988887654321100 01112
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCCc
Q 030277 119 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 119 ~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~ 155 (180)
.+..| .....+++-....++|+||+++||||+|+++.
T Consensus 155 a~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 155 HRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 23333 34445666667799999999999999999754
No 126
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.58 E-value=1e-06 Score=76.71 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+...+..+....+|+|++|-|.|.|||......||+++|.+++.++. +-|.+++...+... .++.+ .
T Consensus 266 ~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-A 335 (762)
T PLN03229 266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-A 335 (762)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-H
Confidence 45566667777889999999999999988887777899999999987653 22444444444432 22222 2
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
....+++|++.+++|+||+|+|
T Consensus 336 Ae~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 336 AEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred HHHcCCCHHHHHhCCCCeeecc
Confidence 3456899999999999999997
No 127
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.58 E-value=1.4e-06 Score=69.78 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 131 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 131 (180)
.+.+..++..+....+|+|+.|-|.+.|||..-...||++++.+++.++. +.|.+.+...+.. ...+.+..
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~sv------isPEg~a~Il~~~---~~~a~~aa 245 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSV------ISPEGCASILWKD---ASKAPEAA 245 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEee------cCHHHHHHHHhcC---chhHHHHH
Confidence 45566677778899999999999999888876666799999999988763 2244444433332 23333333
Q ss_pred hcCCCCCHHHHHhcCccceecC
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
- ..++++.++++.|+||+|+|
T Consensus 246 e-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 246 E-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred H-HcCCCHHHHHHCCCceEecc
Confidence 3 56789999999999999997
No 128
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.51 E-value=3.7e-06 Score=65.55 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 115 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~ 115 (180)
.+.+.+..++.|+.+.|+..|+++|..++++||-++|.+.+.+|..+.++|-.|..+..
T Consensus 109 ~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil 167 (285)
T PF01972_consen 109 QIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASIL 167 (285)
T ss_pred HHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHH
Confidence 45566777899999999999999999999999999999999999999999988865443
No 129
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.39 E-value=7.2e-06 Score=61.39 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEE--EEcCCeEEeCccccccccCCcchh---------------hhhh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGAGGT---------------QRLP 119 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~--i~~~~~~~~~~e~~~G~~p~~~~~---------------~~l~ 119 (180)
..+..+...+.||...+-|.+.+.|..|++++|.. ++.|++++-.+...-|+.....=. ..+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999995 999999998888764332111000 0111
Q ss_pred hhcCH--HHHHHHHhcCCCCCHHHHHhcCccceecCCch
Q 030277 120 RLVGK--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 120 ~~~g~--~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
+..|. ..-.+..-....++|+||+++||||+|.+..+
T Consensus 156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 11121 12223334456899999999999999997643
No 130
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=98.34 E-value=1.1e-05 Score=61.55 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE--EEEcCCeEEeCccccccccCCcchh-----------------hh
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------QR 117 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~--~i~~~~~~~~~~e~~~G~~p~~~~~-----------------~~ 117 (180)
.++..+...+-|+...+-|.|.+.+..|++++|- |++.+++.+-++...-|... .+. ..
T Consensus 98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G--~A~di~~~a~el~~~r~~l~~i 175 (222)
T PRK12552 98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARG--QATDIQIRAKEVLHNKRTMLEI 175 (222)
T ss_pred HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccccc--CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677788888999999999999999996 99999999988887544321 111 11
Q ss_pred hhhhcC--HHHHHHHHhcCCCCCHHHHHhcCccceecCC
Q 030277 118 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 118 l~~~~g--~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
+.+..| .....+.+-.-..++|+||+++||||+|+++
T Consensus 176 ya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 176 LSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 112222 2333344445568999999999999999965
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.29 E-value=1e-05 Score=62.53 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHh---cCCCcEEEEECCccchhhH-HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHH
Q 030277 51 YVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSV 126 (180)
Q Consensus 51 ~~~~~~~~~~~~~---~~~kp~Ia~v~G~~~g~G~-~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~ 126 (180)
..+.+.++...+. +.+.|+|+.|-|.++|+|+ .+.+.+|.+++.+++.++ ..++-++...+.+-. +.
T Consensus 89 ~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~ 159 (238)
T TIGR03134 89 INQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EE 159 (238)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hH
Confidence 3444555555555 4559999999999998875 555558888888777665 444444443333322 33
Q ss_pred HHHHHhcC--CCCCHHHHHhcCccceecCCch
Q 030277 127 AKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ 156 (180)
Q Consensus 127 a~~l~l~g--~~~~a~ea~~~Glv~~v~~~~~ 156 (180)
..++.-+- ...+...+.++|+||+++++.+
T Consensus 160 ~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 160 LEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 33443222 2356778999999999998654
No 132
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.26 E-value=8.6e-05 Score=59.17 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHH-HHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIH-FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.+.++++.+... .+-+|.+..+ + |... ++.... ..+-.....+.++.....|.|+.+.|+|.||+.
T Consensus 144 Ki~r~~e~A~~~-~lPlV~l~ds-g-----Garm------qEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 144 KIVRAVERAIEE-KCPLVIFSAS-G-----GARM------QEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC-C-----Ccch------hhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 455666666555 5566777654 3 2211 111110 111222334445566789999999999999964
Q ss_pred -HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 83 -EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 83 -~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
.+++.+|++++.+++.+++...+ .+...++... .-+--+++-+.+.|+||.|+++.++....
T Consensus 211 as~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~l------pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l 273 (292)
T PRK05654 211 ASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREKL------PEGFQRAEFLLEHGAIDMIVHRRELRDTL 273 (292)
T ss_pred HHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhhh------hhhhcCHHHHHhCCCCcEEECHHHHHHHH
Confidence 56778999999998877764331 1111111110 00112567778899999999999999998
Q ss_pred HHHHHHHhccCH
Q 030277 162 LEIAQEINQKVQ 173 (180)
Q Consensus 162 ~~~a~~~~~~~~ 173 (180)
.++.+.+..+++
T Consensus 274 ~~~L~~~~~~~~ 285 (292)
T PRK05654 274 ASLLALHTKQPA 285 (292)
T ss_pred HHHHHHHhcCCC
Confidence 888887765543
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.22 E-value=5.9e-05 Score=59.88 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh-
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG- 81 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G- 81 (180)
.+.++++.+.+. .+-+|.+..+ +++ -. ++.. ....+-.....+.++.....|.|+.+.|+|.||+
T Consensus 143 Ki~r~~e~A~~~-~lPlV~l~dS-gGa-----Rm------qEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 143 KFVRAIEKALED-NCPLIIFSAS-GGA-----RM------QEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcC-CCc-----cc------ccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 455666666544 5566777665 222 11 1111 1111122233445566678999999999999996
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
+.+++.+|++++.+++.+++...+. +.+.++.. +.-+--+++-+.+.|+||.|+++.++.+..
T Consensus 210 as~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~------lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l 272 (285)
T TIGR00515 210 ASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK------LPEGFQTSEFLLEHGAIDMIVHRPEMKKTL 272 (285)
T ss_pred HHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc------cchhcCCHHHHHhCCCCcEEECcHHHHHHH
Confidence 4567899999999998887744431 11111110 011112466677899999999999999888
Q ss_pred HHHHHHHhcc
Q 030277 162 LEIAQEINQK 171 (180)
Q Consensus 162 ~~~a~~~~~~ 171 (180)
.++.+.+..+
T Consensus 273 ~~~L~~~~~~ 282 (285)
T TIGR00515 273 ASLLAKLQNL 282 (285)
T ss_pred HHHHHHHhhC
Confidence 8887765543
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2e-05 Score=65.14 Aligned_cols=136 Identities=15% Similarity=0.255 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC---Cccc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAAL 78 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~---G~~~ 78 (180)
.+.++++++.++++..- ++|+.=..++ | ..+.++++.+.|.+.+.|++..+. ++|.
T Consensus 42 ~~~l~r~l~~A~~~~a~-~vvl~ldTPG----G----------------l~~sm~~iv~~i~~s~vPV~~yv~p~ga~Aa 100 (436)
T COG1030 42 ADYLQRALQSAEEENAA-AVVLELDTPG----G----------------LLDSMRQIVRAILNSPVPVIGYVVPDGARAA 100 (436)
T ss_pred HHHHHHHHHHHHhCCCc-EEEEEecCCC----c----------------hHHHHHHHHHHHHcCCCCEEEEEcCCCcchh
Confidence 35678888888877532 3333222122 1 235667899999999999999883 5799
Q ss_pred hhhHHHHhhCCEEEEcCCeEEeCccccccc-c--CCcchhh-------hhhhhc--CHHHHHHHHhcCCCCCHHHHHhcC
Q 030277 79 GGGLEMALACDLRICGEAALLGLPETGLAI-I--PGAGGTQ-------RLPRLV--GKSVAKDIIFTGRKVSGKDAMSLG 146 (180)
Q Consensus 79 g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~-~--p~~~~~~-------~l~~~~--g~~~a~~l~l~g~~~~a~ea~~~G 146 (180)
.+|.-++++||+..|+|.+.++....-.+- . +....+. -+.+.- ....+.+++.....++++||.+.|
T Consensus 101 SAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 101 SAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred chhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 999999999999999999999876653322 1 1111011 112222 255677888889999999999999
Q ss_pred ccceecCC-chHH
Q 030277 147 LVNYYVPA-GQAQ 158 (180)
Q Consensus 147 lv~~v~~~-~~~~ 158 (180)
++|-+..+ .|+.
T Consensus 181 vid~iA~~~~ell 193 (436)
T COG1030 181 VIDLIARDLNELL 193 (436)
T ss_pred ccccccCCHHHHH
Confidence 99988754 4443
No 135
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.16 E-value=8.6e-05 Score=58.53 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=55.1
Q ss_pred HhcCCCcEEEEECCc--cchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCH--HHHHHHHhcCCCC
Q 030277 62 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK--SVAKDIIFTGRKV 137 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~--~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~--~~a~~l~l~g~~~ 137 (180)
+... .|+|+.+.|+ |+||+..++..||++|+++++.+++...+. .....|. -...+--|..+.+
T Consensus 133 ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l~~~~l 200 (274)
T TIGR03133 133 ARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRALVWRTT 200 (274)
T ss_pred HhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhccccccc
Confidence 3444 9999999999 899999999999999999998777633310 1111111 0111222233445
Q ss_pred CHHHHHhcCccceecCCc
Q 030277 138 SGKDAMSLGLVNYYVPAG 155 (180)
Q Consensus 138 ~a~ea~~~Glv~~v~~~~ 155 (180)
.+......|++|.+++++
T Consensus 201 GG~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 201 GGKHRFLSGDADVLVEDD 218 (274)
T ss_pred chHhHhhcccceEEeCCH
Confidence 566778899999999874
No 136
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.97 E-value=4.3e-05 Score=59.93 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHh
Q 030277 53 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 132 (180)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l 132 (180)
+.+...+..+.+.++|+||.|=|---+||.-=...+|.++|-++++++. +.|.+.++.++.. .+++.+..
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA- 244 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA- 244 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence 3445556667889999999999998888877777889999999999983 4577777766664 34444443
Q ss_pred cCCCCCHHHHHhcCccceecCC
Q 030277 133 TGRKVSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 133 ~g~~~~a~ea~~~Glv~~v~~~ 154 (180)
...++++++.+++|+||.|+|.
T Consensus 245 e~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 245 EAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HHcCCCHHHHHhCCCcceeccC
Confidence 4557999999999999999974
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.89 E-value=0.00072 Score=53.78 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=59.7
Q ss_pred cCCCcEEEEECCccchhhHH-HHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH
Q 030277 64 ALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 142 (180)
Q Consensus 64 ~~~kp~Ia~v~G~~~g~G~~-l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea 142 (180)
.-..|.|+.+.|+|.||+.. +++.||++|+.+++.+++...+. ....+|.. +.-.--+++-.
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~ae~l 267 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAAEYL 267 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccHHHH
Confidence 46789999999999999764 57779999998888777644321 00000000 00001247778
Q ss_pred HhcCccceecCCchHHHHHHHHHHHH
Q 030277 143 MSLGLVNYYVPAGQAQLKALEIAQEI 168 (180)
Q Consensus 143 ~~~Glv~~v~~~~~~~~~a~~~a~~~ 168 (180)
.+.|+||.+|+..++.+...++.+-+
T Consensus 268 ~~~G~vD~iV~r~~lr~~l~~ll~~~ 293 (296)
T CHL00174 268 FDKGLFDLIVPRNLLKGVLSELFQLH 293 (296)
T ss_pred HhCcCceEEEcHHHHHHHHHHHHHhh
Confidence 89999999999998887776665543
No 138
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.86 E-value=0.00059 Score=54.49 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=35.3
Q ss_pred HhcCCCcEEEEECCc--cchhhHHHHhhCCEEEEcCCeEEeCcc
Q 030277 62 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPE 103 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~--~~g~G~~l~~~~D~~i~~~~~~~~~~e 103 (180)
+... +|+|+.+.|. |+||+...+..||++|+++++.+++..
T Consensus 142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG 184 (301)
T PRK07189 142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG 184 (301)
T ss_pred HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC
Confidence 3444 9999999999 999999999999999999998777643
No 139
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.86 E-value=0.00057 Score=53.32 Aligned_cols=140 Identities=16% Similarity=0.239 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhH-HHHHHHHHHHHHHHHhcCCCcEEEEECCccchh-h
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG-G 81 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~-G 81 (180)
.+.++++.+-.+ .+.+|+++.+|| . .+++.. ....+......+.++..-..|.|+.+..++.|| -
T Consensus 145 ki~ra~E~A~e~-k~P~v~f~aSGG------A------RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVs 211 (294)
T COG0777 145 KITRAIERAIED-KLPLVLFSASGG------A------RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 211 (294)
T ss_pred HHHHHHHHHHHh-CCCEEEEecCcc------h------hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 467777777655 578888888742 2 122221 122234556677888889999999999999888 4
Q ss_pred HHHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHH
Q 030277 82 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 161 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a 161 (180)
..+++.-|+.++-|++.++|...+. .-+.....++.. --+++-.++.|+||.||+..++....
T Consensus 212 ASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPeg----------fQ~aEfLlehG~iD~iv~R~elr~tl 274 (294)
T COG0777 212 ASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPEG----------FQTAEFLLEHGMIDMIVHRDELRTTL 274 (294)
T ss_pred HhHHhccCeeecCcccccccCcchh-------hhhhhcccCCcc----------hhhHHHHHHcCCceeeecHHHHHHHH
Confidence 7999999999999999888765531 111122222211 12477788999999999999888887
Q ss_pred HHHHHHHhccCH
Q 030277 162 LEIAQEINQKVQ 173 (180)
Q Consensus 162 ~~~a~~~~~~~~ 173 (180)
..+...+...++
T Consensus 275 a~ll~~~~~~~~ 286 (294)
T COG0777 275 ASLLAKLTPQPA 286 (294)
T ss_pred HHHHHHhCCCCC
Confidence 777776665443
No 140
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.77 E-value=0.0014 Score=56.13 Aligned_cols=87 Identities=26% Similarity=0.373 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCC
Q 030277 57 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 135 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 135 (180)
.-..++.. ..|+|+++.|+|.|+|..+...||++|+.++ +.+++... ...+ ..+|+
T Consensus 123 ~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~--~~~Ge 179 (493)
T PF01039_consen 123 RAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE--SATGE 179 (493)
T ss_dssp HHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH--HHHSS
T ss_pred HHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc--cccCc
Confidence 33445556 9999999999999999999999999999988 77664322 1111 13467
Q ss_pred CCCHHHH-------HhcCccceecCCc-hHHHHHHHHHH
Q 030277 136 KVSGKDA-------MSLGLVNYYVPAG-QAQLKALEIAQ 166 (180)
Q Consensus 136 ~~~a~ea-------~~~Glv~~v~~~~-~~~~~a~~~a~ 166 (180)
.++.++. ..-|.+|.+++++ +..+.++++..
T Consensus 180 ~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls 218 (493)
T PF01039_consen 180 EVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS 218 (493)
T ss_dssp CTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence 7777653 4679999999876 23344444443
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.76 E-value=0.0017 Score=55.88 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHH
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 83 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~ 83 (180)
...+.++.+++. ++-+|.|.-+ ++ |..|.+ .+.....+....++..+....+|.|+.+-|.+.|+|+.
T Consensus 338 K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~---------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 338 KIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVN---------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 344555555543 4555655554 22 554432 22233345556677778889999999999999888654
Q ss_pred HHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcC----HHHHHHHHh---cCCCCCHHHHHhcCccceec
Q 030277 84 MAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG----KSVAKDIIF---TGRKVSGKDAMSLGLVNYYV 152 (180)
Q Consensus 84 l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g----~~~a~~l~l---~g~~~~a~ea~~~Glv~~v~ 152 (180)
-.. .+|++++.+++.++.-.. .......+.+.+. ...+++..+ .-+..++..+.+.|+||.|+
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v~~p------e~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI 479 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAVMGP------AGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI 479 (512)
T ss_pred HhccccCCCCEEEEcCCCeEeecCH------HHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE
Confidence 433 389999999887764322 1111111221111 111111111 12244788999999999999
Q ss_pred CCchHHHHHHHHHHHHhcc
Q 030277 153 PAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 153 ~~~~~~~~a~~~a~~~~~~ 171 (180)
++.+.........+.+..+
T Consensus 480 ~P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 480 EPKQTRPKIVNALAMLESK 498 (512)
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 9999888776666655443
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.32 E-value=0.0055 Score=52.74 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=55.6
Q ss_pred CCCcEEEEECCccchhhHHHHhhCCEEEEcCCe-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHHHH-
Q 030277 65 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 142 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ea- 142 (180)
-..|.|+++.|+|.|++......||++|+.+++ .+++.. +...+. .+|+.++++|.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG--------------------P~vv~~--~~Ge~v~~e~lG 210 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG--------------------PQVIKT--VTGEEVTAEQLG 210 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC--------------------hHHHHh--hcCcccchhhcc
Confidence 458999999999999998888899999999874 344311 111111 24555555544
Q ss_pred ------HhcCccceecCC-chHHHHHHHHHHHHh
Q 030277 143 ------MSLGLVNYYVPA-GQAQLKALEIAQEIN 169 (180)
Q Consensus 143 ------~~~Glv~~v~~~-~~~~~~a~~~a~~~~ 169 (180)
..-|.+|.++++ ++..+.++++..-+-
T Consensus 211 Ga~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 211 GAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred hHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence 257999999876 445555666655543
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.29 E-value=0.015 Score=50.66 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred HHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCC-eEEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCH
Q 030277 61 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 139 (180)
Q Consensus 61 ~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~-~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a 139 (180)
++.....|.|+++.|.|.|||......||++|+.++ +.+++. |+...+. .+|+.+++
T Consensus 200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~~ 257 (569)
T PLN02820 200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVSA 257 (569)
T ss_pred HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccCH
Confidence 355567999999999999999999999999999875 444431 1111111 24555665
Q ss_pred HHH-----H--hcCccceecCCc-hHHHHHHHHHHHH
Q 030277 140 KDA-----M--SLGLVNYYVPAG-QAQLKALEIAQEI 168 (180)
Q Consensus 140 ~ea-----~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 168 (180)
+|. + .-|.+|.+++++ +..+.++++..-+
T Consensus 258 eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 258 EDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 554 2 468888888765 3445555555555
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.99 E-value=0.01 Score=51.61 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHh----hCCEEEEcCCeEEeCccccccccCCcchhhhhhhh-c-
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V- 122 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~----~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~-~- 122 (180)
....+....++..+.....|.|+.+-|.++|+|..-.. ..|++++.+++.++ ..++.++...+.+. +
T Consensus 422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~-------vmg~e~aa~il~~~e~~ 494 (569)
T PLN02820 422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG-------VMGGAQAAGVLAQIERE 494 (569)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE-------ecCHHHHHHHHHHHHhh
Confidence 34567778888889999999999999999998754443 56777777666555 54444444333321 1
Q ss_pred -----------CHHHH-HHHH--hcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 123 -----------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 123 -----------g~~~a-~~l~--l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
....+ ++.+ ..-+..++..+.+.|+||.|+++.+.........+.....
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 495 NKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR 557 (569)
T ss_pred hhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence 11101 1111 1122457788899999999999988877665555544443
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.65 E-value=0.004 Score=53.39 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhC----CEEEEcCCeEEeCccccccccCCcchhhhhhhhcC-
Q 030277 49 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC----DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG- 123 (180)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~----D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g- 123 (180)
....+...+++..+..++.|+|..+-|.++|+|..-.... |++++.|++.++.-.. .......+.+..-
T Consensus 350 ~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~~------e~a~~i~~~~~~~~ 423 (493)
T PF01039_consen 350 AGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMGP------EGAASILYRDELEA 423 (493)
T ss_dssp TTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-H------HHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecCh------hhhheeeehhhhhh
Confidence 3446677788999999999999999999999887555555 8888888888775332 2212222221111
Q ss_pred -------HHH-HHHHHh-c-CCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhcc
Q 030277 124 -------KSV-AKDIIF-T-GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 171 (180)
Q Consensus 124 -------~~~-a~~l~l-~-g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 171 (180)
... ..+.+. . -+..++..+...+++|.++++.+.........+-..++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 424 AEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp SCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred hhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 000 111111 1 11257899999999999999998887766665554443
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.31 E-value=0.043 Score=47.04 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=54.9
Q ss_pred HhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCe-EEeCccccccccCCcchhhhhhhhcCHHHHHHHHhcCCCCCHH
Q 030277 62 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 140 (180)
Q Consensus 62 ~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~-~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ 140 (180)
+... .|.|++|-|.|.|||.-+...||++|+.++. ++.+- |++..+. -||+.++++
T Consensus 160 ~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik~--vtGe~V~~e 216 (526)
T COG4799 160 ASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIKA--VTGEEVSAE 216 (526)
T ss_pred hccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHHh--hcCcEeehh
Confidence 4444 9999999999999999999999999999884 32211 1111111 245555544
Q ss_pred HH-------HhcCccceecCCchHHHHHHHHHHHHhc
Q 030277 141 DA-------MSLGLVNYYVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 141 ea-------~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 170 (180)
|. ..-|.+|.+.++| +++.++++++.+
T Consensus 217 ~LGGa~vh~~~sGva~~~a~dd---~~Ai~~vr~~ls 250 (526)
T COG4799 217 ELGGAQVHARKSGVADLLAEDD---EDAIELVRRLLS 250 (526)
T ss_pred hccchhhhcccccceeeeecCH---HHHHHHHHHHHH
Confidence 32 3348998888654 556666666554
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.4 Score=37.42 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHhcCCCcEEEEECCccchhhHHHHhhC--CEEEEcCCeEEeCccccccccCCcchhhh---hhhhcC---------
Q 030277 58 TFSFLEALPIPTIAVIDGAALGGGLEMALAC--DLRICGEAALLGLPETGLAIIPGAGGTQR---LPRLVG--------- 123 (180)
Q Consensus 58 ~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~--D~~i~~~~~~~~~~e~~~G~~p~~~~~~~---l~~~~g--------- 123 (180)
.+..+..++-||-..+-|.|.+-|..|..+- -.|++-|++++-.....-| ..+...-. ..+++-
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg--a~Gqa~Di~i~akE~~~~k~~l~~i~ 219 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGG--AGGQATDIVIQAKELMRIKEYLNEIY 219 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCC--cCccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666688887775554442 2366666666555444433 11111111 111111
Q ss_pred -------HHHHHHHHhcCCCCCHHHHHhcCccceecC
Q 030277 124 -------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 153 (180)
Q Consensus 124 -------~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~ 153 (180)
.....+-+-.-+-++|+||+++||||+|++
T Consensus 220 a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 220 AKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 111112222334689999999999999986
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.98 E-value=0.19 Score=43.27 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHH----HhhCCEEEEcCCeEEeCccccccccCCcchhhhhh-h
Q 030277 46 SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM----ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP-R 120 (180)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l----~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~-~ 120 (180)
.+....++.-..++.++....+|.|..+-|.++|+|..- .+..|+.++.+++.+ ++.-+-++...+. +
T Consensus 377 ~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~i-------aVMG~egAv~i~~~k 449 (526)
T COG4799 377 QEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEI-------AVMGPEGAVSILYRK 449 (526)
T ss_pred HHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCccee-------eecCHHHHHHHHHHH
Confidence 344455667778899999999999999999999998533 334555555555554 4443333332222 2
Q ss_pred hcC---HHHHHH------HH--hcCCCCCHHHHHhcCccceecCCchHHHHHHHHHHHHhccC
Q 030277 121 LVG---KSVAKD------II--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 172 (180)
Q Consensus 121 ~~g---~~~a~~------l~--l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 172 (180)
.+. .....+ +. ..-+-.++--+.+.|++|.++++.+...........+..++
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~ 512 (526)
T COG4799 450 ELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKP 512 (526)
T ss_pred HhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCc
Confidence 221 000000 00 01112456677889999999999888777666666665553
No 149
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.83 E-value=0.26 Score=39.81 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCC---CceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccch
Q 030277 3 RGLKHAFETISEDS---SANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 79 (180)
Q Consensus 3 ~~l~~~l~~~~~d~---~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g 79 (180)
.++.++|+.+...+ .+-+|||.=. |+.+. ||..|- -..+.+.+..++.|||++| ||-.-
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RG-GGs~e---DL~~FN-------------~e~varai~~~~~PvisaI-GHe~D 119 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRG-GGSIE---DLWAFN-------------DEEVARAIAASPIPVISAI-GHETD 119 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecC-CCChH---HhcccC-------------hHHHHHHHHhCCCCEEEec-CCCCC
Confidence 57888999988664 4556666332 22111 332221 1357889999999999998 66644
Q ss_pred hhHHHHhhCCEEEEcCCe
Q 030277 80 GGLEMALACDLRICGEAA 97 (180)
Q Consensus 80 ~G~~l~~~~D~~i~~~~~ 97 (180)
- .-.=+.||.|..||.+
T Consensus 120 ~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 120 F-TIADFVADLRAPTPTA 136 (319)
T ss_pred c-hHHHHHHHhhCCCHHH
Confidence 3 4555778888888774
No 150
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=91.75 E-value=0.35 Score=40.94 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.++.++++.++..+++.+||+.=. |+.+. ||..|. -..+.+.+..+|.|||++| ||-.-- .
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RG-GGs~e---DL~~Fn-------------~e~~~rai~~~~~Pvis~i-GHe~D~-t 233 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRG-GGSLE---DLWSFN-------------DEKVARAIFLSKIPIISAV-GHETDF-T 233 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecC-CCCHH---HhhhcC-------------cHHHHHHHHcCCCCEEEec-CcCCCc-c
Confidence 578888988887666667766332 33221 222221 1357889999999999998 554432 3
Q ss_pred HHHhhCCEEEEcCCe--EEeCcc
Q 030277 83 EMALACDLRICGEAA--LLGLPE 103 (180)
Q Consensus 83 ~l~~~~D~~i~~~~~--~~~~~e 103 (180)
-.=+.+|.|..||.+ .+-.|.
T Consensus 234 i~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 234 ISDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred HHHHhhhccCCCcHHHHHHhCcc
Confidence 455778888888773 344443
No 151
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=88.65 E-value=0.83 Score=38.64 Aligned_cols=74 Identities=20% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCceEEEE-EeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhh
Q 030277 3 RGLKHAFETISEDSSANVVMI-RSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 81 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl-~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G 81 (180)
.++.++|+.++..+ +.+||| +|. +.+. ||..|- -..+.+++..++.|||++| ||-.--
T Consensus 179 ~~i~~al~~~~~~~-~Dviii~RGG--GS~e---DL~~Fn-------------~e~v~~ai~~~~~Pvis~I-GHE~D~- 237 (438)
T PRK00286 179 ASIVAAIERANARG-EDVLIVARGG--GSLE---DLWAFN-------------DEAVARAIAASRIPVISAV-GHETDF- 237 (438)
T ss_pred HHHHHHHHHhcCCC-CCEEEEecCC--CCHH---HhhccC-------------cHHHHHHHHcCCCCEEEec-cCCCCc-
Confidence 57888898887643 445555 443 2221 332221 1357889999999999998 665432
Q ss_pred HHHHhhCCEEEEcCCe
Q 030277 82 LEMALACDLRICGEAA 97 (180)
Q Consensus 82 ~~l~~~~D~~i~~~~~ 97 (180)
.-.=+.+|.|..||.+
T Consensus 238 tl~D~vAd~ra~TPta 253 (438)
T PRK00286 238 TIADFVADLRAPTPTA 253 (438)
T ss_pred cHHHHhhhccCCChHH
Confidence 3455778888888773
No 152
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=88.19 E-value=4.4 Score=31.38 Aligned_cols=94 Identities=12% Similarity=0.171 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhH-HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhhcCHHHHHHH
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGL-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 130 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~-~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~~g~~~a~~l 130 (180)
.....+.+.......-|+|+.+-|.+++||| ...+.+|..++-++ +.+-..+-. +..+..++ ....-.++
T Consensus 91 lAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~-s~ARVTk~-~ve~Le~l 161 (234)
T PF06833_consen 91 LAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKP-SAARVTKR-PVEELEEL 161 (234)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChH-HhHHHhhc-CHHHHHHH
Confidence 3344455555677889999999999999986 78888888887663 333333222 22344432 34445555
Q ss_pred HhcCCC--CCHHHHHhcCccceecCC
Q 030277 131 IFTGRK--VSGKDAMSLGLVNYYVPA 154 (180)
Q Consensus 131 ~l~g~~--~~a~ea~~~Glv~~v~~~ 154 (180)
.-+--+ ++.+--.++|.++++.+.
T Consensus 162 a~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 162 AKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred hhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 555443 346677789999999984
No 153
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=88.09 E-value=1.8 Score=34.39 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
.+.++|+.+++||+.++||+-|.-++ + .+++. .+++.. ...+||+|+.+-|.+.
T Consensus 187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~-------aEe~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEADPETEAIVMIGEIGG------P-------AEEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhcCccccEEEEEecCCC------c-------HHHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 35789999999999999999997321 0 11112 233444 3345999999998876
No 154
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=86.85 E-value=4.9 Score=34.12 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhH---HHHhhCCEEEEcCCeEEeCccccccccCCcchhhhhhhh-------
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGL---EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL------- 121 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~---~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~~~~~l~~~------- 121 (180)
.+.-..++.+..--++|-|..+.|.++||-+ ...+.-|+.++.|++++++-..+ ++...+.+.
T Consensus 408 aK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~ 480 (536)
T KOG0540|consen 408 AKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVA 480 (536)
T ss_pred hhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhh
Confidence 3344567777788888999999999999754 45677788888888877654331 112122221
Q ss_pred cCHHHHHHHHhcCCCCCHHHHHhcCccceecCCchHHHHHH
Q 030277 122 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 162 (180)
Q Consensus 122 ~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v~~~~~~~~~a~ 162 (180)
.+... -+.+ |.|+. +...||.|.++++.+.....-
T Consensus 481 ~~~~~-~E~f--~npy~---a~~Rg~~D~II~p~~tR~vl~ 515 (536)
T KOG0540|consen 481 LKAPY-IEKF--GNPYY---AAARGWDDGIIDPSDTRKVLG 515 (536)
T ss_pred hcchH-HHHh--cCccH---HHHhhccccccChhHhhHHHH
Confidence 11111 1221 44443 467899999999877655433
No 155
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=85.56 E-value=3.5 Score=33.46 Aligned_cols=53 Identities=9% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+++||+.++|++-+..++ . .+.+..++++. ...+||+|+.+-|..-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~--------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIGG-----T--------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecCC-----c--------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 5688899999999999999887321 1 11222222221 2468999999988864
No 156
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=84.79 E-value=3.6 Score=29.17 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
.+.+.++.+.+||++++|++--.+ +. + -+.+.+..++.... ||+|+..-|..-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~---~~-------------d-----~~~f~~~~~~a~~~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG---IG-------------D-----GRRFLEAARRAARR-KPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-----S-------------------HHHHHHHHHHHCCC-S-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC---CC-------------C-----HHHHHHHHHHHhcC-CCEEEEeCCCch
Confidence 356788888889999998887752 11 0 13445566666666 999999988743
No 157
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=83.66 E-value=2.8 Score=35.44 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
.++.++++.+++.+++.++|+-=. |+ -+ ++...|-+ ..+.+.+..++.|+|++| ||-.-. .
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVaRG-GG------Si--------EDLW~FNd--E~vaRAi~~s~iPvISAV-GHEtD~-t 239 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVARG-GG------SI--------EDLWAFND--EIVARAIAASRIPVISAV-GHETDF-T 239 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEecC-cc------hH--------HHHhccCh--HHHHHHHHhCCCCeEeec-ccCCCc-c
Confidence 578899999998888888888332 22 11 11111111 246888999999999998 554322 2
Q ss_pred HHHhhCCEEEEcCC
Q 030277 83 EMALACDLRICGEA 96 (180)
Q Consensus 83 ~l~~~~D~~i~~~~ 96 (180)
-.=..+|.|-.||.
T Consensus 240 L~DfVAD~RApTPT 253 (440)
T COG1570 240 LADFVADLRAPTPT 253 (440)
T ss_pred HHHhhhhccCCCch
Confidence 23356777887766
No 158
>smart00250 PLEC Plectin repeat.
Probab=83.24 E-value=1 Score=24.27 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHhcCccce
Q 030277 133 TGRKVSGKDAMSLGLVNY 150 (180)
Q Consensus 133 ~g~~~~a~ea~~~Glv~~ 150 (180)
+|++++-.||.+.||||.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 159
>PLN02522 ATP citrate (pro-S)-lyase
Probab=81.27 E-value=6.2 Score=34.97 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHHHHHHhhcCCCceEEEEEeC-CCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+++||++++|++-+. |++ ..+ .+.+..+... ..||+|+..-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e~----~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGGR-----------------DEY----SLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCch-----------------hHH----HHHHHHHHhc-CCCCEEEEeccCCC
Confidence 5788899999999999999887 321 111 1222333333 78999999988876
No 160
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=80.86 E-value=3.6 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH-----hcCCCcEEEEECCccc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-----EALPIPTIAVIDGAAL 78 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~kp~Ia~v~G~~~ 78 (180)
...++|....+||++++|++-+-.|-.=| ++... .+...+ ...++|+|+.+.|...
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~-------~l~~a~~~~~~~~~~~pvVa~v~GT~~ 120 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAA-------GLIPAIKEAKAEGRKKPVVARVCGTNA 120 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHH-------HHHHHHSHCTHTTT-SEEEEEEESTTC
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHH-------HHHHHHHhccccCCCCcEEEEeeeecC
Confidence 45788899999999999999886321111 11122 223333 3478999999999876
Q ss_pred h
Q 030277 79 G 79 (180)
Q Consensus 79 g 79 (180)
-
T Consensus 121 d 121 (153)
T PF00549_consen 121 D 121 (153)
T ss_dssp H
T ss_pred C
Confidence 4
No 161
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=76.25 E-value=0.86 Score=25.63 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.6
Q ss_pred hcCCCCCHHHHHhcCcccee
Q 030277 132 FTGRKVSGKDAMSLGLVNYY 151 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v 151 (180)
-+|++++-++|.+.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 47899999999999999853
No 162
>PRK06091 membrane protein FdrA; Validated
Probab=66.14 E-value=25 Score=30.86 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+.+||+.++|++-+. + +.+... + +++....+..||+|+.--|..-
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~k-p---------------paE~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSK-P---------------PAEAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEe-c---------------CchHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 5667788888888888888774 2 112221 1 3344444459999999988654
No 163
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=65.72 E-value=20 Score=28.90 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+.+||+.++|++-..++ |.++ .+. +.++.... ..||+|+..-|..-
T Consensus 193 ~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~--------~d~-------~~f~~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 193 FVDCLEKFVKDPQTEGIILIGEIG-----GTAE--------EDA-------AAFIKESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred HHHHHHHHhhCCCCcEEEEEeccC-----CchH--------HHH-------HHHHHHhc-CCCCEEEEEecCCC
Confidence 456777777777777777766521 1111 111 12222222 38999999888763
No 164
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=65.21 E-value=73 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=28.9
Q ss_pred CcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccc
Q 030277 67 IPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET 104 (180)
Q Consensus 67 kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~ 104 (180)
.|-+-.+++.-.+-=..+...||.+++|+|+.=...|.
T Consensus 208 ~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA 245 (311)
T PF06258_consen 208 NPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEA 245 (311)
T ss_pred CCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHH
Confidence 34444456666666688999999999999988777776
No 165
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=65.21 E-value=6.6 Score=28.16 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHH
Q 030277 16 SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNT 54 (180)
Q Consensus 16 ~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~ 54 (180)
+++++.=+.|. ....|+|+||+--...+........+.
T Consensus 78 ESi~v~D~Agn-~hVLCaGIDLNPAi~aQG~da~~iA~~ 115 (178)
T PF12268_consen 78 ESIKVKDLAGN-NHVLCAGIDLNPAIDAQGGDALSIAEE 115 (178)
T ss_pred cccccccCCCC-ceeEEecccCCHhHhhcCCCHHHHHHH
Confidence 45667777776 899999999987655443333333333
No 166
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=61.02 E-value=27 Score=22.73 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHH-hcCCCcEEEEECCcc
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAA 77 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kp~Ia~v~G~~ 77 (180)
+++.++|..+-+++++.+|+++-. ..+.+.+.+..+ .....|+|..+-+.-
T Consensus 28 ee~~~~l~~l~~~~~~gIIii~e~------------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 28 EEAEEALKELLKDEDVGIIIITED------------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEHH------------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHhcCCCccEEEeeHH------------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 577888999988899999998764 123334444444 567999999986554
No 167
>PRK05665 amidotransferase; Provisional
Probab=60.98 E-value=12 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 51 YVNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 51 ~~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
++..+.++++.+...++|+++.+-|+
T Consensus 76 wi~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 76 WIQTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 45666777887778899999665554
No 168
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=60.29 E-value=16 Score=31.14 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 78 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~ 78 (180)
+.+.|+.+.+||++++|++-..+ + .+. +.+.+..++..+ .||+|+..-|..-
T Consensus 191 ~~d~l~~l~~D~~t~~I~ly~E~---~--------------~~~----~~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 191 ESDLLEYLADDPDTKVILLYLEG---I--------------KDG----RKFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred HHHHHHHHhhCCCCCEEEEEecC---C--------------CCH----HHHHHHHHHHcC-CCCEEEEecCCCh
Confidence 56778888888888888887752 1 001 233445555555 9999999988864
No 169
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=57.47 E-value=39 Score=27.06 Aligned_cols=23 Identities=9% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcCCCceEEEEEeC
Q 030277 4 GLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
++.+.|+.+.+||++++|++-..
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 45678888888999999888776
No 170
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=55.70 E-value=58 Score=21.55 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHH-HhcCCCcEEEEECC
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDG 75 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~Ia~v~G 75 (180)
.++.++|+.+-.++++.+|++|-. ..+.+.+..++ +.+..+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~------------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD------------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh------------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 467888888866888888888764 12233444444 66789999998865
No 171
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=55.01 E-value=20 Score=28.96 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHH
Q 030277 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 85 (180)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~ 85 (180)
.+-++.+. +....++||||+ +-.. +++++ ..++.++..++..+.+..+|++ |.|+|.-+.+-
T Consensus 89 y~~~~~i~-~~~~DG~IITGA-p~e~---~~fed---------v~YW~El~~i~~w~~~~~~s~L----gICwGaQa~a~ 150 (302)
T PRK05368 89 YCTFEDIK-DEKFDGLIITGA-PVEQ---LPFED---------VDYWDELKEILDWAKTHVTSTL----FICWAAQAALY 150 (302)
T ss_pred ccCHHHhc-cCCCCEEEEcCC-CCCC---ccCCC---------CchHHHHHHHHHHHHHcCCCEE----EEcHHHHHHHH
Confidence 33444443 457789999998 3110 11111 1134556677777777788988 67777765554
Q ss_pred hhCC
Q 030277 86 LACD 89 (180)
Q Consensus 86 ~~~D 89 (180)
....
T Consensus 151 algG 154 (302)
T PRK05368 151 HLYG 154 (302)
T ss_pred HcCC
Confidence 4444
No 172
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=52.55 E-value=61 Score=25.52 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
.+.++|+.+-.|++.+.||+-|.-++ ..+++..++.++ . .-..-+||+++.+.|..
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG-------------~AEe~AA~flk~---~--nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG-------------SAEEEAAEFLKE---Y--NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC-------------hhhHHHHHHHHH---h--ccCCCCCceeEEeeccc
Confidence 35678888889999999999997432 112223222222 1 23347899999987764
No 173
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=52.33 E-value=31 Score=30.32 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=43.8
Q ss_pred CCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHH
Q 030277 15 DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 85 (180)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~ 85 (180)
.|++-|+|-|-..=| +=.|.+..++...+.+....-...+...+..+.++..|+|.++|-+..---.++.
T Consensus 322 ~P~~~VlVaTvraLK-~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~ 391 (557)
T PRK13505 322 KPDAVVIVATVRALK-MHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIA 391 (557)
T ss_pred CCCEEEEEeehHHHH-HcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 366555555543112 2335666666555555554445566666777888999999999988776554443
No 174
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=51.05 E-value=32 Score=26.31 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.7
Q ss_pred CceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 17 SANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 17 ~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
...++||||+.-.+|+ |. .++..+.+++..+..+.|+++..+-||-
T Consensus 59 ky~gfvIsGS~~dAf~---d~------------dWI~KLcs~~kkld~mkkkvlGICFGHQ 104 (245)
T KOG3179|consen 59 KYDGFVISGSKHDAFS---DA------------DWIKKLCSFVKKLDFMKKKVLGICFGHQ 104 (245)
T ss_pred hhceEEEeCCcccccc---cc------------hHHHHHHHHHHHHHhhccceEEEeccHH
Confidence 4568888887544554 22 2456778888889999999997776663
No 175
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=50.47 E-value=56 Score=26.22 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEeC
Q 030277 4 GLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
++.+.|+.+.+||+.++|++-..
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 35677888888888888888775
No 176
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=42.26 E-value=38 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCc
Q 030277 53 NTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
....++++......+|+++.+.|+
T Consensus 68 ~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 68 KKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred HHHHHHHHHHHHCCCCEEEECccH
Confidence 345666777777789999766665
No 177
>PRK06490 glutamine amidotransferase; Provisional
Probab=42.20 E-value=43 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.....++++......+|+++.+-|+
T Consensus 72 i~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 72 IRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred HHHHHHHHHHHHHCCCCEEEECHhH
Confidence 3445567777777899999665443
No 178
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=40.62 E-value=75 Score=28.41 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
.+.+++++..++-+.|+++|-.+.-|.-|- . .....+...+..+.||.||+|
T Consensus 353 l~v~erl~hr~dg~yvvvsgitptp~gegk----------s------t~t~glvqal~~l~k~~iacv 404 (935)
T KOG4230|consen 353 LAVLERLKHRKDGKYVVVSGITPTPLGEGK----------S------TTTAGLVQALGALGKLAIACV 404 (935)
T ss_pred HHHHHHHhccCCCcEEEEeccCCCCCCCCc----------c------hhHHHHHHHHHhhCCcceeee
Confidence 357888888888899999997565554332 1 112345666777899999987
No 179
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=40.60 E-value=26 Score=27.92 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCCCceEEEEEeC
Q 030277 5 LKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
+...+..+.+|+.|++|+++|+
T Consensus 8 ~~~Il~~A~~d~rIraV~l~GS 29 (282)
T PF04439_consen 8 MDLILEFAKQDERIRAVILNGS 29 (282)
T ss_dssp HHHHHHHHHH-TTEEEEEE---
T ss_pred HHHHHHHHhcCCcEEEEEEecC
Confidence 4556677779999999999997
No 180
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.28 E-value=1.1e+02 Score=25.75 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030277 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 73 (180)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v 73 (180)
++.++.+++++=+.|.+...+++|+++|+ ....++...++..+....-..+|+|+.=
T Consensus 55 tiG~lid~~~~g~~d~~n~~vlmt~TgGp----------------CRfgnYi~~~rkaLk~aG~~~V~visLn 111 (420)
T COG3581 55 TIGQLIDAIESGEYDIENDAVLMTQTGGP----------------CRFGNYIELLRKALKDAGFRDVPVISLN 111 (420)
T ss_pred hHHHHHHHHHhCCccccccEEEEecCCCC----------------cchhhHHHHHHHHHHHcCCCCCcEEEee
Confidence 35678888888888988899999997543 3344455555666666666778888754
No 181
>PRK09065 glutamine amidotransferase; Provisional
Probab=39.65 E-value=41 Score=25.93 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.....++++......+|+++.+-|+
T Consensus 74 ~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 74 SERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred HHHHHHHHHHHHHCCCCEEEEChhH
Confidence 3445666777777899999655544
No 182
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=38.96 E-value=36 Score=24.47 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC-CCCceEecCCccc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKE 39 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~ 39 (180)
+..|...|..++.||++.-|-+|-. .+-..|+|.-+..
T Consensus 27 C~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAG 65 (172)
T COG4032 27 CDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAG 65 (172)
T ss_pred HHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcC
Confidence 3567888999999999988887765 2334599987754
No 183
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=37.48 E-value=34 Score=30.06 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=40.5
Q ss_pred cCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE
Q 030277 14 EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90 (180)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~ 90 (180)
-.|++-|+|.|-. .-=+=.|.+.+.+...+.+....-+..+..-+..+..+..|+|.++|-..-----++.+..++
T Consensus 320 l~P~~~VlVaTvR-ALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~ 395 (557)
T PF01268_consen 320 LKPDAVVLVATVR-ALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIREL 395 (557)
T ss_dssp ---SEEEEEEEHH-HHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHH
T ss_pred cCcceEEEeeech-HHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 3477666666553 111223556666555555555555556666677788999999999998877666777666554
No 184
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=36.15 E-value=1.3e+02 Score=23.20 Aligned_cols=43 Identities=35% Similarity=0.639 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEE---------CCccchhh-----HHHHhhCCEEEEc
Q 030277 52 VNTLRSTFSFLEALPIPTIAVI---------DGAALGGG-----LEMALACDLRICG 94 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v---------~G~~~g~G-----~~l~~~~D~~i~~ 94 (180)
++.+.+.++.+...+||..-++ .|.|+|-| ++.+..|...+.-
T Consensus 124 y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvG 180 (262)
T KOG3040|consen 124 YQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVG 180 (262)
T ss_pred HHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEec
Confidence 5677888999999998876665 57787776 4455555554443
No 185
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=35.89 E-value=7.8 Score=32.62 Aligned_cols=81 Identities=10% Similarity=0.038 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCCceEEEE--EeCCCCceEecCCccccccCChhH---HHHHH-HHHHHHHHHHhcCCCcEEEEECCc
Q 030277 3 RGLKHAFETISEDSSANVVMI--RSSVPKVFCAGADLKERRQMSPSE---IHFYV-NTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl--~g~~~~~F~~G~D~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.+|..++..++++. ++.+|| +++.|+..+..+++..+.-....- ....- ...+.-...-...++|+|..+|+.
T Consensus 219 ~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~ 297 (406)
T COG0793 219 EDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLVNEG 297 (406)
T ss_pred HHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEECCC
Confidence 46889999999886 788887 777677777777776544321000 00000 000000000115689999999998
Q ss_pred cchhhHHH
Q 030277 77 ALGGGLEM 84 (180)
Q Consensus 77 ~~g~G~~l 84 (180)
...++=.+
T Consensus 298 SASAsEI~ 305 (406)
T COG0793 298 SASASEIF 305 (406)
T ss_pred CccHHHHH
Confidence 87776333
No 186
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=34.99 E-value=66 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCcEEEEECCc
Q 030277 56 RSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
..+++.+....+|+++.+.|+
T Consensus 90 ~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 90 LALLRAALERGKPILGICRGM 110 (189)
T ss_pred HHHHHHHHHCCCCEEEEcchH
Confidence 455666666789999776665
No 187
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=34.38 E-value=46 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030277 3 RGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
.++.+.++.+++|++|.+|++---
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~P 96 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQLP 96 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEESS
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCC
Confidence 578899999999999999998654
No 188
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=34.33 E-value=1.1e+02 Score=26.87 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=44.4
Q ss_pred CCCceEEEEEeCCCCceEecCCccccc-cCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCE
Q 030277 15 DSSANVVMIRSSVPKVFCAGADLKERR-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 90 (180)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~ 90 (180)
.|++-|+|-|-..=| +=.|.+...+. +.+.+....-...+..-+..+..+..|+|.++|-..----.++.+..++
T Consensus 305 ~P~a~VlVaTvRALK-~hGG~~~~~l~~~en~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~ 380 (524)
T cd00477 305 KPDAVVLVATVRALK-MHGGVPKVTLGLEENLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKL 380 (524)
T ss_pred CCCEEEEEEehHHHH-HhCCCCcccCCCccCHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 366555555443111 22345555544 3333444444455556667778899999999999887666666655444
No 189
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=32.73 E-value=93 Score=27.72 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=33.7
Q ss_pred cCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC
Q 030277 34 GADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD 89 (180)
Q Consensus 34 G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D 89 (180)
|.+...+...+.+....-...+..-+..+..+..|+|.++|-..----.++.+..+
T Consensus 405 G~~~~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~ 460 (625)
T PTZ00386 405 GVEPVVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKE 460 (625)
T ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHH
Confidence 44444443333333333334455556667889999999999887665556554433
No 190
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.62 E-value=85 Score=24.14 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCC--CcE-EEEECCccchhhHHHHhhCCE
Q 030277 52 VNTLRSTFSFLEALP--IPT-IAVIDGAALGGGLEMALACDL 90 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~--kp~-Ia~v~G~~~g~G~~l~~~~D~ 90 (180)
...+...+..+.+.+ .+. |+ +-|.|+||++.+.+++..
T Consensus 93 ~~d~~a~~~~L~~~~~~~~~~ig-~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 93 LADIDAALDYLARQPQVDPKRIG-VVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCceEE-EEEEcccHHHHHHhhccc
Confidence 344455555555555 232 44 449999999999999988
No 191
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=32.31 E-value=3e+02 Score=23.04 Aligned_cols=68 Identities=12% Similarity=0.285 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
..+.++++.+..||++++|++.-. .|..- . ....+.+.+..... ..+||+++.+.|...-.+.
T Consensus 296 e~~~~aL~~ll~Dp~VdaVlv~i~------ggi~~--------~--~~vA~~Ii~a~~~~-~~~kPvvv~l~G~~~e~~~ 358 (392)
T PRK14046 296 ERVAKAFRLVLSDRNVKAILVNIF------AGINR--------C--DWVAEGVVQAAREV-GIDVPLVVRLAGTNVEEGR 358 (392)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEcC------CCCCC--------H--HHHHHHHHHHHHhc-CCCCcEEEEcCCCCHHHHH
Confidence 457889999999999999997322 22110 0 11122222222211 2789998888775555555
Q ss_pred HHHhh
Q 030277 83 EMALA 87 (180)
Q Consensus 83 ~l~~~ 87 (180)
.+.-.
T Consensus 359 ~iL~~ 363 (392)
T PRK14046 359 KILAE 363 (392)
T ss_pred HHHHH
Confidence 54433
No 192
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=31.72 E-value=2.6e+02 Score=22.03 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.++++-. ..++.+++.|+.|.+++ ...++..+.. +.+.....-++|+|+-+......-..
T Consensus 19 ~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~----------Ls~~Er~~~~----~~~~~~~~~~~~vi~gv~~~s~~~~i 83 (285)
T TIGR00674 19 AALEKLIDFQIE-NGTDAIVVVGTTGESPT----------LSHEEHKKVI----EFVVDLVNGRVPVIAGTGSNATEEAI 83 (285)
T ss_pred HHHHHHHHHHHH-cCCCEEEECccCccccc----------CCHHHHHHHH----HHHHHHhCCCCeEEEeCCCccHHHHH
Confidence 456666666553 57888888776555444 3334433332 22222334578999988777776666
Q ss_pred HHHh-----hCCEEEEcCCeEEe
Q 030277 83 EMAL-----ACDLRICGEAALLG 100 (180)
Q Consensus 83 ~l~~-----~~D~~i~~~~~~~~ 100 (180)
.++- .+|.+...+-.++.
T Consensus 84 ~~a~~a~~~Gad~v~v~pP~y~~ 106 (285)
T TIGR00674 84 SLTKFAEDVGADGFLVVTPYYNK 106 (285)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCC
Confidence 6665 67877766554443
No 193
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=31.65 E-value=39 Score=29.69 Aligned_cols=35 Identities=29% Similarity=0.655 Sum_probs=28.5
Q ss_pred CCCcEEEEECCccchh-hHHHHhhCCEEEEcCCeEE
Q 030277 65 LPIPTIAVIDGAALGG-GLEMALACDLRICGEAALL 99 (180)
Q Consensus 65 ~~kp~Ia~v~G~~~g~-G~~l~~~~D~~i~~~~~~~ 99 (180)
+..-+|+.|+|+.+-- |+.+.+.|+++|++|.-.+
T Consensus 349 lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLi 384 (673)
T KOG0333|consen 349 LGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI 384 (673)
T ss_pred ccceEEEEecccchhhhhhhhhccceeeecCchHHH
Confidence 3356899999999765 8999999999999876443
No 194
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.29 E-value=68 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.3
Q ss_pred HHHHhcCccceecCCchHHHHHHHHHHHHhc
Q 030277 140 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 170 (180)
Q Consensus 140 ~ea~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 170 (180)
++++++| ++.++++..-.++...++++..+
T Consensus 106 ~~l~~~G-~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 106 KKFKEMG-FDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred HHHHHcC-CCEEECcCCCHHHHHHHHHHHhc
Confidence 5799999 89999976666676666665543
No 195
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=31.06 E-value=1.3e+02 Score=26.68 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEE
Q 030277 48 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR 91 (180)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~ 91 (180)
...-...+..-+..+..+..|+|.++|-..----.++.+..++.
T Consensus 383 l~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~ 426 (587)
T PRK13507 383 VEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLA 426 (587)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 33333444555666788999999999988766666666655443
No 196
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=30.09 E-value=2.2e+02 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCCc-eEEEEEeC
Q 030277 3 RGLKHAFETISEDSSA-NVVMIRSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v-~~vvl~g~ 26 (180)
.+|.+.++..-+++++ .+||+.|+
T Consensus 63 ~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 63 LKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCC
Confidence 4555555543334444 45555554
No 197
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=29.40 E-value=1.9e+02 Score=25.71 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=41.2
Q ss_pred CCCceEEEEEeCCCCceEecCCccc-------cccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhh
Q 030277 15 DSSANVVMIRSSVPKVFCAGADLKE-------RRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA 87 (180)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~D~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~ 87 (180)
.|++-|+|-|-..=|+-..+.+... +...+.+....-...+..-+..+..+..|+|.++|-..----.++.+.
T Consensus 335 ~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~ 414 (578)
T PRK13506 335 APDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAINRFPTDTDEELEWL 414 (578)
T ss_pred CCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 4666566655542222222233333 222222333333334455566678899999999998876655565554
Q ss_pred CCE
Q 030277 88 CDL 90 (180)
Q Consensus 88 ~D~ 90 (180)
.++
T Consensus 415 ~~~ 417 (578)
T PRK13506 415 KEA 417 (578)
T ss_pred HHH
Confidence 433
No 198
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=29.33 E-value=85 Score=23.17 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEE-EE
Q 030277 15 DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLR-IC 93 (180)
Q Consensus 15 d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~-i~ 93 (180)
+...-++|+||+ +--- ++ -+...+++++.+++....+.-+|++ |.|+|+-+.+-....+. ..
T Consensus 60 ~~~yDGlIITGA-pve~---~~---------fe~v~Yw~El~~i~dwa~~~v~stl----~iCWgaqaal~~~yGi~k~~ 122 (175)
T cd03131 60 DAKFDGLIVTGA-PVEH---LP---------FEQVDYWEELTEILDWAKTHVTSTL----FSCWAAMAALYYFYGIKKHQ 122 (175)
T ss_pred ccCCCEEEEeCC-Cccc---CC---------ccccchHHHHHHHHHHHHHhCcchH----HHHHHHHHHHHHHcCccccc
Confidence 455678899888 2111 11 1122356667777777777777776 88999888787777774 44
Q ss_pred cCCeEEe
Q 030277 94 GEAALLG 100 (180)
Q Consensus 94 ~~~~~~~ 100 (180)
-++-.|+
T Consensus 123 ~~~K~~G 129 (175)
T cd03131 123 LPEKIFG 129 (175)
T ss_pred CCCceEE
Confidence 4444444
No 199
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=29.18 E-value=78 Score=24.46 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcC-CCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECC-ccchh
Q 030277 3 RGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG-AALGG 80 (180)
Q Consensus 3 ~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G-~~~g~ 80 (180)
+...++|+.+..+ .+|..||..+. -+.+..|+|. .+.+++.-.+-.--..++| .|.||
T Consensus 106 ~Aa~~AL~~~g~~~~dIthlv~vs~-TG~~~PglD~-------------------~l~~~LgL~~~v~R~~i~~~GC~gg 165 (226)
T PF00195_consen 106 EAARKALAEAGLDPSDITHLVTVSC-TGIAAPGLDA-------------------RLINRLGLRPDVQRTPIFGMGCAGG 165 (226)
T ss_dssp HHHHHHHHHHTS-GGGECEEEEEES-SSSECS-HHH-------------------HHHHHHT--TTSEEEEEES-GGGHH
T ss_pred HHHHHHHHHcCCCCcccceEEEEec-CCcCCCchhH-------------------HHHhcCCCCCCcEEEEEeccchhhH
Confidence 4556778887755 56666666554 3467777754 2344444334333334455 46777
Q ss_pred hHHHHhhCCEEEEcCCeE
Q 030277 81 GLEMALACDLRICGEAAL 98 (180)
Q Consensus 81 G~~l~~~~D~~i~~~~~~ 98 (180)
...|..+.|+.-+.+++.
T Consensus 166 ~~~L~~A~~~~~~~p~a~ 183 (226)
T PF00195_consen 166 AAGLRRAKDIARANPGAR 183 (226)
T ss_dssp HHHHHHHHHHHHHSTT-E
T ss_pred HHHHHHHHHHHhCCccce
Confidence 789999999876666655
No 200
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=28.95 E-value=2.2e+02 Score=23.52 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhcCCCceEEEE-EeC
Q 030277 3 RGLKHAFETISEDSSANVVMI-RSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl-~g~ 26 (180)
.+|.+.++..-.++++..+|+ .|+
T Consensus 91 ~~la~~I~~~~~~~~~~GiVVtHGT 115 (349)
T TIGR00520 91 LKLAKGINELLASDDYDGIVITHGT 115 (349)
T ss_pred HHHHHHHHHHhccCCCCEEEEeCCc
Confidence 455555555444445444444 444
No 201
>PRK14053 methyltransferase; Provisional
Probab=28.46 E-value=53 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~ 41 (180)
+.+.+..+-.+|++|.+|+.|...+..-+|.-+..++
T Consensus 52 IEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~ 88 (194)
T PRK14053 52 VEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIH 88 (194)
T ss_pred HHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 4566777788999999999998554555555554443
No 202
>PRK07567 glutamine amidotransferase; Provisional
Probab=28.31 E-value=1.7e+02 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCCcEEEEECCc
Q 030277 54 TLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 54 ~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.++++++......+|+++.+-|+
T Consensus 81 ~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 81 ELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEchhH
Confidence 34556666668899999665554
No 203
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=28.23 E-value=2e+02 Score=19.68 Aligned_cols=50 Identities=12% Similarity=0.281 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
.++.++|+.+-.++++.+|++|-. ..+.+++.+.... ...|+|-.+-+.-
T Consensus 46 eei~~~~~~~l~~~digIIlIte~------------------------~a~~i~~~I~~~~-~~~PaIieIP~k~ 95 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQH------------------------IAEMIRHAVDAHT-RSIPAVLEIPSKD 95 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHH------------------------HHHHhHHHHHhcC-CcCCEEEEECCCC
Confidence 578888888666788888887653 2344556666644 7889998886643
No 204
>PRK13317 pantothenate kinase; Provisional
Probab=28.02 E-value=3.1e+02 Score=21.78 Aligned_cols=24 Identities=0% Similarity=-0.014 Sum_probs=15.4
Q ss_pred HHHhhcCCCceEEEEEeCCCCceE
Q 030277 9 FETISEDSSANVVMIRSSVPKVFC 32 (180)
Q Consensus 9 l~~~~~d~~v~~vvl~g~~~~~F~ 32 (180)
.+++....++..+.+||.++..++
T Consensus 39 ~~~l~~~~~~~~i~~TG~g~~~~~ 62 (277)
T PRK13317 39 IDWLINLQDIEKICLTGGKAGYLQ 62 (277)
T ss_pred HHHhhccCCceEEEEECcchhhhh
Confidence 333444456778999998655554
No 205
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=27.55 E-value=47 Score=24.51 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecC
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGA 35 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~ 35 (180)
+.+.+..+-.+|++|.+|++|...+..-+|.
T Consensus 55 IEKvI~NvisNpnIRflilcG~Ev~GH~~Gq 85 (176)
T PF04208_consen 55 IEKVIANVISNPNIRFLILCGSEVKGHLTGQ 85 (176)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCCcchH
Confidence 5567778889999999999998544344443
No 206
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=27.38 E-value=1.9e+02 Score=19.24 Aligned_cols=50 Identities=10% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
+++.++++.+. ++++.+|++|-. ..+.+.+.+........|+|-.+.+.-
T Consensus 32 ee~~~~i~~l~-~~d~gII~Ite~------------------------~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 32 QEAINTLRKLA-MEDYGIIYITEQ------------------------IAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred HHHHHHHHHHh-cCCcEEEEEcHH------------------------HHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 35666777765 667777777543 123344455555567889998886643
No 207
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=27.29 E-value=90 Score=23.72 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCCcEEEEECCccchh
Q 030277 55 LRSTFSFLEALPIPTIAVIDGAALGG 80 (180)
Q Consensus 55 ~~~~~~~~~~~~kp~Ia~v~G~~~g~ 80 (180)
+.++++.+...+.-+|+.+.|.....
T Consensus 24 ~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 24 LRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp HHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred HHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 34455555555555555555555544
No 208
>PRK07053 glutamine amidotransferase; Provisional
Probab=27.11 E-value=69 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCc
Q 030277 53 NTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
....++++.+....+|+++.+-|+
T Consensus 70 ~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 70 APEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred HHHHHHHHHHHHCCCCEEEECccH
Confidence 345567777777899999665443
No 209
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=26.71 E-value=2e+02 Score=26.49 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEC-CccchhhHH
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAALGGGLE 83 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~-G~~~g~G~~ 83 (180)
+.++...++ +.+ -+||..|.....-+-|.|...+.-. .. -.+++..+....||+|..++ |..+-...
T Consensus 492 ~~~a~~~A~-~aD-~vIv~vg~~~~~~~E~~Dr~~l~Lp-~~--------Q~~Li~~v~~~~~~vVvVl~~g~P~~l~~- 559 (765)
T PRK15098 492 IDEAVQAAK-QAD-VVVAVVGEAQGMAHEASSRTDITIP-QS--------QRDLIAALKATGKPLVLVLMNGRPLALVK- 559 (765)
T ss_pred HHHHHHHHh-cCC-EEEEEEcCCCCccccCCCcccccCC-HH--------HHHHHHHHHHhCcCEEEEEeCCceeeccc-
Confidence 455555444 334 3555555422233446666654321 11 13456666667889888876 76655432
Q ss_pred HHhhCCEEE
Q 030277 84 MALACDLRI 92 (180)
Q Consensus 84 l~~~~D~~i 92 (180)
+.-.+|-++
T Consensus 560 ~~~~v~AiL 568 (765)
T PRK15098 560 EDQQADAIL 568 (765)
T ss_pred hhhcCCeEE
Confidence 222445444
No 210
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.63 E-value=91 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.+.+.+....+..++||+||.++-.
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3567788889999999999999855
No 211
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=26.59 E-value=64 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
.+++..+|+.+.++|+++=|++||.
T Consensus 143 ~~~~~~al~YIa~hPeI~eVllSGG 167 (369)
T COG1509 143 KEEWDKALDYIAAHPEIREVLLSGG 167 (369)
T ss_pred HHHHHHHHHHHHcCchhheEEecCC
Confidence 3678999999999999999999996
No 212
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=26.51 E-value=1.8e+02 Score=24.17 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=43.1
Q ss_pred HHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhc---CCCcEEEEECCccchhhHHHH
Q 030277 9 FETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALGGGLEMA 85 (180)
Q Consensus 9 l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~kp~Ia~v~G~~~g~G~~l~ 85 (180)
+.++...-..+++++.-. |-.+|.|. . .........+.+.+.+.. -++|.=-...|+.+|||+.=.
T Consensus 163 ~~~~ak~~~aNvl~fNYp-GVg~S~G~---------~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~ 231 (365)
T PF05677_consen 163 IQRFAKELGANVLVFNYP-GVGSSTGP---------P-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAE 231 (365)
T ss_pred HHHHHHHcCCcEEEECCC-ccccCCCC---------C-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHH
Confidence 333444455567777665 55566664 1 124455666777777763 457766668999999997544
Q ss_pred hhCC
Q 030277 86 LACD 89 (180)
Q Consensus 86 ~~~D 89 (180)
...+
T Consensus 232 AL~~ 235 (365)
T PF05677_consen 232 ALKK 235 (365)
T ss_pred HHHh
Confidence 4333
No 213
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=26.03 E-value=85 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCCcEEEEECCc
Q 030277 55 LRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 55 ~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
+.++++.+....||+++.+.|+
T Consensus 61 ~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 61 LLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred HHHHHHHHHHCCCeEEEECHHH
Confidence 3456777778899999666554
No 214
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=25.81 E-value=2.3e+02 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
+.+|.+.+...-.++.-.+||+.|+
T Consensus 138 W~~La~~I~~~~~~~~dGvVVtHGT 162 (419)
T PRK04183 138 WVEIAEAVYEEIKNGADGVVVAHGT 162 (419)
T ss_pred HHHHHHHHHHHhhccCCeEEEecCC
Confidence 3455555555433333355666665
No 215
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=25.72 E-value=15 Score=20.95 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=15.5
Q ss_pred hhhhcCHHHHHHHHhcCCCCCHHHHHhcCcccee
Q 030277 118 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 151 (180)
Q Consensus 118 l~~~~g~~~a~~l~l~g~~~~a~ea~~~Glv~~v 151 (180)
+.-.+| ..+ ++++.|+++.++.+.+.|+.=+.
T Consensus 6 lkl~lG-e~a-~lll~~q~v~P~kL~~~GF~F~~ 37 (48)
T PF08338_consen 6 LKLLLG-EMA-ELLLASQRVSPKKLLEAGFQFRY 37 (48)
T ss_dssp ---------G-GGGG-EEEE--HHHHHTT---S-
T ss_pred HHHHHH-HHH-HHHhCCCeecChHHHHCCCcccC
Confidence 334466 455 99999999999999999987555
No 216
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=25.42 E-value=63 Score=24.96 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~ 41 (180)
+.+.+..+-.||++|.+|++|...+..-+|.-+..++
T Consensus 59 IEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh 95 (238)
T TIGR01111 59 IEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALH 95 (238)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHH
Confidence 4566777789999999999998554555555554443
No 217
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=25.22 E-value=1.4e+02 Score=22.12 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCC---CcEEEEECCccchhhHHHHhhCCE
Q 030277 53 NTLRSTFSFLEALP---IPTIAVIDGAALGGGLEMALACDL 90 (180)
Q Consensus 53 ~~~~~~~~~~~~~~---kp~Ia~v~G~~~g~G~~l~~~~D~ 90 (180)
..+...+..+...+ .--|+ +-|.|+||.+.+.++++.
T Consensus 80 ~~~~aa~~~l~~~~~~~~~kig-~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 80 ADLQAAVDYLRAQPEVDPGKIG-VVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEE-EEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHhccccCCCcEE-EEEEecchHHhhhhhhhc
Confidence 44455566677666 22344 449999999998888764
No 218
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=25.10 E-value=1e+02 Score=20.38 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030277 3 RGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
.++.++|+.+-+++++.+|++|-.
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite~ 53 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITER 53 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcHH
Confidence 467888998888889888887653
No 219
>PLN03037 lipase class 3 family protein; Provisional
Probab=24.80 E-value=83 Score=27.52 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=18.8
Q ss_pred EEECCccchhhHHHHhhCCEEEE
Q 030277 71 AVIDGAALGGGLEMALACDLRIC 93 (180)
Q Consensus 71 a~v~G~~~g~G~~l~~~~D~~i~ 93 (180)
-.+.||.+||++....+.|+..-
T Consensus 320 ItVTGHSLGGALAtLaA~DIa~~ 342 (525)
T PLN03037 320 LTITGHSLGGALALLNAYEAARS 342 (525)
T ss_pred EEEeccCHHHHHHHHHHHHHHHh
Confidence 34789999999999999887543
No 220
>PRK08250 glutamine amidotransferase; Provisional
Probab=24.38 E-value=1.4e+02 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCCcEEEEECCc
Q 030277 56 RSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.++++.+....||+++.+.|+
T Consensus 74 ~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 74 QRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred HHHHHHHHHcCCCEEEEChhH
Confidence 455666667899999776554
No 221
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=24.14 E-value=68 Score=24.72 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccc
Q 030277 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERR 41 (180)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~ 41 (180)
+.+.+..+-.+|++|.+|++|...+..-+|.-|..++
T Consensus 59 IEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~ 95 (225)
T PRK00964 59 IEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALH 95 (225)
T ss_pred HHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 4566777789999999999998544454555554443
No 222
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=24.09 E-value=1.5e+02 Score=25.91 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=34.5
Q ss_pred EecCCcccccc----CChhHHHHHHHHHHHHHHHHhcCCCcEEE---------EECCccchh
Q 030277 32 CAGADLKERRQ----MSPSEIHFYVNTLRSTFSFLEALPIPTIA---------VIDGAALGG 80 (180)
Q Consensus 32 ~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia---------~v~G~~~g~ 80 (180)
|-|.|++-+.. +.+.+.+..+..+.+.+..+...+-|+|. .++|.+.|.
T Consensus 550 ceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGe 611 (775)
T KOG1151|consen 550 CEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGE 611 (775)
T ss_pred cCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccce
Confidence 45888865543 45566777777777788888777777765 478888775
No 223
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=3.1e+02 Score=22.70 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCCCc-eEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEE
Q 030277 2 LRGLKHAFETISEDSSA-NVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIA 71 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v-~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia 71 (180)
+.+|.+.++..-.++++ .+||+.|+ + .+++...++..+.+.+||+|-
T Consensus 85 w~~la~~I~~~~~~~~~dGvVItHGT-D----------------------TmeeTA~~L~l~l~~~kPVVl 132 (351)
T COG0252 85 WLRLAEAINEALDDGDVDGVVITHGT-D----------------------TMEETAFFLSLTLNTPKPVVL 132 (351)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCCC-c----------------------hHHHHHHHHHHHhcCCCCEEE
Confidence 34566666655555543 45555555 2 123334455556666899874
No 224
>smart00463 SMR Small MutS-related domain.
Probab=23.92 E-value=1.7e+02 Score=18.03 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCCC-ceEEEEEeCC
Q 030277 2 LRGLKHAFETISEDSS-ANVVMIRSSV 27 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~-v~~vvl~g~~ 27 (180)
+..|.+.|+.+..... -.+.|++|.|
T Consensus 15 ~~~l~~~l~~~~~~~~~~~~~II~G~G 41 (80)
T smart00463 15 LTALDKFLNNARLKGLEQKLVIITGKG 41 (80)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3567777887777665 5799999984
No 225
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=23.48 E-value=1.3e+02 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCcEEEEECCc
Q 030277 56 RSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 56 ~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
..+++......+|+.+.+.|+
T Consensus 97 ~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 97 MALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHCCCCEEEECHhH
Confidence 456777777899999776664
No 226
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=23.44 E-value=2.5e+02 Score=20.86 Aligned_cols=20 Identities=40% Similarity=0.760 Sum_probs=15.9
Q ss_pred cCCCceEEEEEeCCCCceEecC
Q 030277 14 EDSSANVVMIRSSVPKVFCAGA 35 (180)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~ 35 (180)
++|..-++|+++ ||.-|+|.
T Consensus 50 ~ePk~a~LIF~S--GK~VcTGa 69 (185)
T COG2101 50 EEPKTAALIFRS--GKVVCTGA 69 (185)
T ss_pred cCCcceEEEEec--CcEEEecc
Confidence 356777888887 69999997
No 227
>PTZ00293 thymidine kinase; Provisional
Probab=23.43 E-value=2.4e+02 Score=21.53 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEE-----CCccchhhHHHHhhCCEEE
Q 030277 53 NTLRSTFSFLEALPIPTIAVI-----DGAALGGGLEMALACDLRI 92 (180)
Q Consensus 53 ~~~~~~~~~~~~~~kp~Ia~v-----~G~~~g~G~~l~~~~D~~i 92 (180)
..+.++...+....+|||++- +|.-+++-..|...||-+.
T Consensus 90 ~~i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~ 134 (211)
T PTZ00293 90 PDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVT 134 (211)
T ss_pred HhHHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEEE
Confidence 456778888889999999883 6888888899999999976
No 228
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=23.41 E-value=1.2e+02 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCcEEEEECCc
Q 030277 57 STFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 57 ~~~~~~~~~~kp~Ia~v~G~ 76 (180)
+.++.+..-.||+++.++|.
T Consensus 80 ~~Ik~f~~~gkpVLGICnG~ 99 (261)
T PRK01175 80 KDIEEFIDEGYPIIGICNGF 99 (261)
T ss_pred HHHHHHHHCCCeEEEECHHH
Confidence 45666677899999887665
No 229
>PLN02759 Formate--tetrahydrofolate ligase
Probab=23.28 E-value=1.7e+02 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCC
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD 89 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D 89 (180)
...+..-+..+..+..|+|.++|-...---.++.+..+
T Consensus 436 ~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~ 473 (637)
T PLN02759 436 CVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQ 473 (637)
T ss_pred hhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHH
Confidence 34445556667889999999999888766666655533
No 230
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=23.22 E-value=2.1e+02 Score=22.50 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhc--CCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 030277 3 RGLKHAFETISE--DSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 77 (180)
Q Consensus 3 ~~l~~~l~~~~~--d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~ 77 (180)
+.+.+.+...+. ...+..||+.|. |+.-.+-.++.++.-.........+..++.-....|.||+ .|.|.-
T Consensus 12 ~~~~~~~~~~~~~~~~~~D~lI~~GD----f~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~-fi~GNH 83 (262)
T cd00844 12 DKIYETLEKIEKKEGTKVDLLICCGD----FQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTI-FIGGNH 83 (262)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCC----CCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEE-EECCCC
Confidence 344444445443 234667887765 4332222222111111111112334445555566788876 455543
No 231
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=22.99 E-value=88 Score=20.17 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=10.7
Q ss_pred CCceEEEEEeCCCCce
Q 030277 16 SSANVVMIRSSVPKVF 31 (180)
Q Consensus 16 ~~v~~vvl~g~~~~~F 31 (180)
.+++-++||++||.++
T Consensus 21 ~~v~~i~lTASGGpFr 36 (84)
T PF08436_consen 21 EEVEKIILTASGGPFR 36 (84)
T ss_dssp CTEEEEEEEE--STTT
T ss_pred cccCEEEEECcchhhC
Confidence 4799999999955543
No 232
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.64 E-value=1.9e+02 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCc
Q 030277 52 VNTLRSTFSFLEALPIPTIAVIDGA 76 (180)
Q Consensus 52 ~~~~~~~~~~~~~~~kp~Ia~v~G~ 76 (180)
.....+.++......+|+.+.+.|+
T Consensus 57 ~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 57 LSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred HHHHHHHHHHHHHcCCCEEEECHHH
Confidence 3455566777778889999776655
No 233
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.64 E-value=3e+02 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEe
Q 030277 3 RGLKHAFETISEDSSANVVMIRS 25 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g 25 (180)
.+|.+.++. .++++..+|+|.
T Consensus 88 ~~l~~~i~~--~~~~~dGiVVtH 108 (347)
T PRK11096 88 LTLAKKINT--DCDKTDGFVITH 108 (347)
T ss_pred HHHHHHHHH--hcCCCCEEEEeC
Confidence 345555554 223444444443
No 234
>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=78 Score=25.08 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEEcCCeEEeCccccccccCCcc
Q 030277 54 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 113 (180)
Q Consensus 54 ~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~~~~~~~~~~e~~~G~~p~~~ 113 (180)
.+.+.+........|.-+.++|.-.+|-+.+...- -++-.|.++++-+|+.+++.+-.|
T Consensus 171 ~~~~~v~elL~~hqpqPsLlHGDLW~gN~a~~~~G-Pv~fDPA~y~GDrE~Dlam~elFg 229 (286)
T COG3001 171 AIVEKIQELLADHQPQPSLLHGDLWSGNCAFGKDG-PVIFDPACYWGDRECDLAMLELFG 229 (286)
T ss_pred HHHHHHHHHHhcCCCCcceeecccccccccccCCC-CeeeccccccCCcccceehhhhhc
Confidence 44455555566777788889999999988777766 677788899999999998865443
No 235
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.95 E-value=3e+02 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030277 3 RGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
.+|.+.+++.-.+ --.+||+.|+
T Consensus 65 ~~la~~I~~~~~~-~dG~VVtHGT 87 (336)
T TIGR00519 65 VEIAEAVKKEYDD-YDGFVITHGT 87 (336)
T ss_pred HHHHHHHHHHHhc-CCeEEEccCC
Confidence 3444544443222 2245555554
No 236
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.75 E-value=1.2e+02 Score=21.40 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=19.8
Q ss_pred HHHhcCccceecCCchHHHHHHHHHHH
Q 030277 141 DAMSLGLVNYYVPAGQAQLKALEIAQE 167 (180)
Q Consensus 141 ea~~~Glv~~v~~~~~~~~~a~~~a~~ 167 (180)
+++++| +++++++..-.++..++.++
T Consensus 105 ~l~~~G-v~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 105 RFKEMG-FDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHcC-CCEEECcCCCHHHHHHHHHH
Confidence 588999 79999887666776666654
No 237
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=21.55 E-value=1.2e+02 Score=23.53 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHH
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRS 57 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~ 57 (180)
+.+|...+..++..+.++|.+=|. ..|.+|+|+.. ++...+.++++.+
T Consensus 158 feelk~ii~~Ikdk~RigVClDTC---H~FaaGyDI~T-----ee~y~evmkeFde 205 (281)
T KOG3997|consen 158 FEELKFIIGKIKDKSRIGVCLDTC---HTFAAGYDIRT-----EEAYEEVMKEFDE 205 (281)
T ss_pred HHHHHHHHHhhcchhhheeeHhhh---hhhccccccch-----HHHHHHHHHHHHH
Confidence 356666666666666666666555 35888888754 2334444544443
No 238
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=21.40 E-value=55 Score=20.68 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred hcCCCCCHHHHHhcCccceecCC-chHHHHHHHHHH
Q 030277 132 FTGRKVSGKDAMSLGLVNYYVPA-GQAQLKALEIAQ 166 (180)
Q Consensus 132 l~g~~~~a~ea~~~Glv~~v~~~-~~~~~~a~~~a~ 166 (180)
.|...+++-|..-+|+|++++++ +++.+..++.++
T Consensus 10 TT~~eIPGiely~~gIvS~~~envd~li~~lee~vk 45 (81)
T PF11524_consen 10 TTTNEIPGIELYYLGIVSEASENVDELIKKLEEKVK 45 (81)
T ss_dssp ESSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHH
T ss_pred EEcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHH
Confidence 35667889999999999999974 444444444443
No 239
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=21.12 E-value=3.2e+02 Score=23.09 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
+.+|.+.+.+.-.++.-.+||+.|+
T Consensus 125 w~~La~~I~~~~~~~~dGvVVtHGT 149 (404)
T TIGR02153 125 WIKIAEAVAKALKEGADGVVVAHGT 149 (404)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCC
Confidence 3455555555433323356666665
No 240
>PRK14558 pyrH uridylate kinase; Provisional
Probab=20.93 E-value=3.2e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCc
Q 030277 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL 37 (180)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~ 37 (180)
++.+.+.+..+... ..+++|++|+ | .|..|..+
T Consensus 25 i~~la~~i~~~~~~-g~~viiV~Gg-G-s~~~g~~~ 57 (231)
T PRK14558 25 VNYLVNEIKSVVEY-GFKIGIVIGA-G-NLFRGVEL 57 (231)
T ss_pred HHHHHHHHHHHHHC-CCeEEEEECc-c-HHHHHHhc
Confidence 34556666665433 4688999886 3 34445443
No 241
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.48 E-value=4.2e+02 Score=20.61 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=41.6
Q ss_pred cCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhHHHHhhCCEEEE
Q 030277 14 EDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 93 (180)
Q Consensus 14 ~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~~l~~~~D~~i~ 93 (180)
.||+ ++|+-- -|+|+|+.. .+.+++.+.++.+-.+.+|-.-+ .+ -++-..||.+|.
T Consensus 150 h~P~--i~vlDE-----P~sGLDi~~------------~r~~~dfi~q~k~egr~viFSSH--~m---~EvealCDrviv 205 (245)
T COG4555 150 HDPS--ILVLDE-----PTSGLDIRT------------RRKFHDFIKQLKNEGRAVIFSSH--IM---QEVEALCDRVIV 205 (245)
T ss_pred cCCC--eEEEcC-----CCCCccHHH------------HHHHHHHHHHhhcCCcEEEEecc--cH---HHHHHhhheEEE
Confidence 5665 566633 388998854 34667788888888887775432 22 578889999998
Q ss_pred cCCeE
Q 030277 94 GEAAL 98 (180)
Q Consensus 94 ~~~~~ 98 (180)
-.+..
T Consensus 206 lh~Ge 210 (245)
T COG4555 206 LHKGE 210 (245)
T ss_pred EecCc
Confidence 65544
No 242
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.11 E-value=1.4e+02 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeC
Q 030277 3 RGLKHAFETISEDSSANVVMIRSS 26 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~ 26 (180)
+++.+.++.+..+++++-|+|||.
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGG 145 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGG 145 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCC
Confidence 567888898988889999999995
No 243
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=4.1e+02 Score=21.27 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCceEecCCccccccCChhHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhH
Q 030277 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 82 (180)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia~v~G~~~g~G~ 82 (180)
+.+.+.++++... .+..|++-|+.|.+++- ..++.. .+.+.......-+.|+|+-+.+....-..
T Consensus 25 ~a~~~lv~~li~~-Gv~gi~~~GttGE~~~L----------s~eEr~----~v~~~~v~~~~grvpviaG~g~~~t~eai 89 (299)
T COG0329 25 EALRRLVEFLIAA-GVDGLVVLGTTGESPTL----------TLEERK----EVLEAVVEAVGGRVPVIAGVGSNSTAEAI 89 (299)
T ss_pred HHHHHHHHHHHHc-CCCEEEECCCCccchhc----------CHHHHH----HHHHHHHHHHCCCCcEEEecCCCcHHHHH
Confidence 4567777777655 57888888876655442 223332 23344555666788999988888776666
Q ss_pred HHHhh
Q 030277 83 EMALA 87 (180)
Q Consensus 83 ~l~~~ 87 (180)
+++-.
T Consensus 90 ~lak~ 94 (299)
T COG0329 90 ELAKH 94 (299)
T ss_pred HHHHH
Confidence 66543
Done!