Query 030278
Match_columns 180
No_of_seqs 110 out of 1025
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 6.8E-29 1.5E-33 194.4 17.7 144 3-146 40-184 (223)
2 COG0586 DedA Uncharacterized m 100.0 2.9E-27 6.3E-32 183.9 16.4 150 5-155 10-171 (208)
3 PF09335 SNARE_assoc: SNARE as 99.9 3.6E-25 7.8E-30 158.1 13.9 120 28-147 1-123 (123)
4 PRK10847 hypothetical protein; 99.9 5.7E-25 1.2E-29 172.4 13.6 147 5-152 22-182 (219)
5 COG1238 Predicted membrane pro 99.7 1.8E-16 3.9E-21 117.8 15.2 141 7-149 14-157 (161)
6 KOG3140 Predicted membrane pro 99.6 4.4E-15 9.6E-20 118.9 10.6 158 3-160 87-246 (275)
7 PF06695 Sm_multidrug_ex: Puta 97.7 0.0011 2.5E-08 47.2 11.1 98 41-139 14-120 (121)
8 PRK01844 hypothetical protein; 89.8 1.9 4.1E-05 27.7 5.9 33 43-75 3-35 (72)
9 PRK00523 hypothetical protein; 88.5 2.5 5.4E-05 27.2 5.8 32 44-75 5-36 (72)
10 COG2839 Uncharacterized protei 85.5 11 0.00023 27.8 8.4 57 14-70 11-78 (160)
11 PF07155 ECF-ribofla_trS: ECF- 85.1 4.5 9.8E-05 29.9 6.7 32 30-61 38-69 (169)
12 PRK11677 hypothetical protein; 84.2 2.5 5.5E-05 30.6 4.7 25 47-71 3-27 (134)
13 COG2426 Predicted membrane pro 79.9 19 0.00041 25.9 7.6 103 41-145 18-136 (142)
14 PRK09609 hypothetical protein; 79.1 29 0.00062 28.8 9.6 27 32-58 45-71 (312)
15 TIGR02359 thiW thiW protein. L 78.7 25 0.00054 26.3 9.9 32 30-61 34-65 (160)
16 COG3763 Uncharacterized protei 77.4 12 0.00027 23.9 5.5 29 43-71 3-31 (71)
17 PF01148 CTP_transf_1: Cytidyl 77.2 8.8 0.00019 30.0 6.1 36 45-81 130-165 (259)
18 PF03672 UPF0154: Uncharacteri 76.8 7.8 0.00017 24.3 4.5 25 50-74 3-27 (64)
19 COG0575 CdsA CDP-diglyceride s 75.0 2.2 4.8E-05 34.4 2.1 33 46-78 135-167 (265)
20 PRK10847 hypothetical protein; 74.0 18 0.0004 28.2 7.1 66 85-150 17-98 (219)
21 PRK13661 hypothetical protein; 73.1 7.3 0.00016 29.7 4.4 33 29-61 39-71 (182)
22 COG1238 Predicted membrane pro 72.8 17 0.00038 27.1 6.3 67 87-154 11-82 (161)
23 PF06295 DUF1043: Protein of u 68.0 11 0.00024 27.0 4.2 22 50-71 2-23 (128)
24 PRK11624 cdsA CDP-diglyceride 67.1 4.1 8.9E-05 33.3 2.1 34 48-81 155-188 (285)
25 PF14163 SieB: Superinfection 65.6 39 0.00085 24.6 6.9 37 23-59 10-50 (151)
26 PF10319 7TM_GPCR_Srj: Serpent 63.0 67 0.0015 26.7 8.4 89 42-136 196-292 (310)
27 PRK10527 hypothetical protein; 63.0 38 0.00083 24.2 6.2 47 21-92 19-66 (125)
28 COG4732 Predicted membrane pro 56.9 33 0.00071 25.5 5.0 52 5-56 6-66 (177)
29 COG4720 Predicted membrane pro 55.9 28 0.0006 26.4 4.6 55 10-64 14-74 (177)
30 PF06305 DUF1049: Protein of u 55.8 46 0.00099 20.4 5.5 10 82-91 56-65 (68)
31 COG4956 Integral membrane prot 54.2 1.2E+02 0.0026 25.4 8.3 40 53-99 43-82 (356)
32 COG3105 Uncharacterized protei 54.0 58 0.0013 23.5 5.7 26 45-70 6-31 (138)
33 PF12822 DUF3816: Protein of u 53.0 22 0.00047 26.1 3.7 31 30-60 31-61 (172)
34 TIGR03750 conj_TIGR03750 conju 52.4 79 0.0017 22.1 8.2 12 83-94 83-94 (111)
35 COG1811 Uncharacterized membra 49.2 96 0.0021 24.5 6.7 39 81-120 77-123 (228)
36 PF02417 Chromate_transp: Chro 48.6 1.1E+02 0.0024 22.7 8.6 61 8-68 35-97 (169)
37 COG3086 RseC Positive regulato 48.2 70 0.0015 23.5 5.5 24 48-71 104-127 (150)
38 PF11990 DUF3487: Protein of u 45.8 1.1E+02 0.0023 21.7 8.2 12 83-94 86-97 (121)
39 TIGR00937 2A51 chromate transp 45.6 1.7E+02 0.0037 24.8 8.4 61 7-67 235-296 (368)
40 PF01810 LysE: LysE type trans 45.4 92 0.002 23.1 6.2 27 124-150 136-162 (191)
41 PF07332 DUF1469: Protein of u 44.7 1E+02 0.0022 21.2 7.5 26 42-67 70-95 (121)
42 COG0586 DedA Uncharacterized m 42.8 1.5E+02 0.0034 22.8 8.9 100 48-149 57-161 (208)
43 PRK12821 aspartyl/glutamyl-tRN 42.0 37 0.0008 29.7 3.8 27 31-57 99-125 (477)
44 COG3763 Uncharacterized protei 41.5 45 0.00097 21.3 3.2 34 49-82 5-38 (71)
45 COG3808 OVP1 Inorganic pyropho 40.6 1.4E+02 0.0031 26.9 7.1 84 49-138 522-624 (703)
46 PF03613 EIID-AGA: PTS system 39.2 2.1E+02 0.0045 23.2 8.9 96 36-136 128-226 (264)
47 PLN02953 phosphatidate cytidyl 38.8 18 0.00039 31.0 1.4 28 47-74 271-298 (403)
48 PF12732 YtxH: YtxH-like prote 36.2 81 0.0018 19.9 4.0 23 50-72 5-27 (74)
49 COG0170 SEC59 Dolichol kinase 33.2 64 0.0014 25.2 3.7 38 45-84 114-151 (216)
50 PRK04897 heat shock protein Ht 32.9 2.3E+02 0.0051 23.1 7.1 24 45-68 41-64 (298)
51 PF06695 Sm_multidrug_ex: Puta 32.0 1.4E+02 0.0031 20.9 5.0 46 48-94 17-62 (121)
52 PLN02594 phosphatidate cytidyl 31.9 37 0.0008 28.6 2.2 30 51-81 131-160 (342)
53 PF04246 RseC_MucC: Positive r 31.8 1.8E+02 0.0038 20.6 5.6 25 47-71 96-120 (135)
54 PRK10862 SoxR reducing system 31.1 1E+02 0.0022 22.7 4.3 23 49-71 105-127 (154)
55 PRK11677 hypothetical protein; 31.1 1.3E+02 0.0027 21.8 4.6 26 43-68 3-28 (134)
56 COG2832 Uncharacterized protei 30.0 2E+02 0.0044 20.3 5.6 23 70-92 43-65 (119)
57 PRK14219 camphor resistance pr 29.9 1.2E+02 0.0026 21.7 4.4 28 44-71 95-122 (132)
58 PRK14472 F0F1 ATP synthase sub 29.6 1.4E+02 0.0031 22.1 5.0 17 33-49 6-22 (175)
59 PF09512 ThiW: Thiamine-precur 29.5 1.3E+02 0.0029 22.2 4.6 26 29-54 29-55 (150)
60 PF11286 DUF3087: Protein of u 29.1 2.5E+02 0.0054 21.1 6.3 56 49-104 51-117 (165)
61 PF11139 DUF2910: Protein of u 27.5 2.8E+02 0.0061 21.2 6.5 50 126-175 156-205 (214)
62 PF13314 DUF4083: Domain of un 26.8 1.6E+02 0.0035 18.1 4.0 14 80-93 45-58 (58)
63 PRK14400 membrane protein; Pro 26.5 1.4E+02 0.0031 23.1 4.5 35 46-80 7-42 (201)
64 PF06897 DUF1269: Protein of u 25.6 2.2E+02 0.0049 19.4 6.1 15 81-95 66-80 (102)
65 PRK04125 murein hydrolase regu 25.6 2.5E+02 0.0054 20.5 5.4 8 24-31 30-37 (141)
66 PRK03072 heat shock protein Ht 25.1 2.2E+02 0.0047 23.2 5.6 32 36-68 23-54 (288)
67 COG1177 PotC ABC-type spermidi 24.9 3.7E+02 0.0081 21.7 7.4 94 41-134 69-174 (267)
68 PRK14407 membrane protein; Pro 24.8 1.2E+02 0.0027 23.8 3.9 31 46-76 7-38 (219)
69 PF04186 FxsA: FxsA cytoplasmi 24.2 2.6E+02 0.0056 19.6 7.6 36 33-68 14-49 (119)
70 PRK14402 membrane protein; Pro 24.1 2.3E+02 0.005 21.9 5.3 60 45-105 4-76 (198)
71 PF12072 DUF3552: Domain of un 24.1 1.3E+02 0.0028 23.1 3.9 27 47-73 3-29 (201)
72 PF10762 DUF2583: Protein of u 23.9 2.3E+02 0.0049 18.9 4.8 22 53-74 49-70 (89)
73 PF09335 SNARE_assoc: SNARE as 23.8 2.3E+02 0.0051 19.0 8.2 34 41-74 10-43 (123)
74 TIGR00937 2A51 chromate transp 23.6 4.5E+02 0.0098 22.2 8.2 63 6-68 25-89 (368)
75 PF02417 Chromate_transp: Chro 23.6 1.1E+02 0.0023 22.7 3.3 54 96-150 45-99 (169)
76 PF01102 Glycophorin_A: Glycop 22.3 1.5E+02 0.0032 21.1 3.6 10 59-68 83-92 (122)
77 PRK00220 putative glycerol-3-p 22.2 2.3E+02 0.0049 21.9 4.9 32 49-80 8-40 (198)
78 PF03030 H_PPase: Inorganic H+ 22.1 4.8E+02 0.01 24.3 7.6 95 49-147 510-625 (682)
79 KOG1109 Vacuole membrane prote 21.9 64 0.0014 27.7 1.9 88 50-137 215-321 (440)
80 PRK11463 fxsA phage T7 F exclu 20.7 3.5E+02 0.0075 19.8 8.1 36 33-68 18-53 (148)
81 PRK14231 camphor resistance pr 20.6 2.2E+02 0.0047 20.3 4.2 29 44-72 92-120 (129)
82 TIGR00814 stp serine transport 20.3 3.3E+02 0.0071 23.3 6.0 101 8-119 4-104 (397)
83 PF12123 Amidase02_C: N-acetyl 20.3 81 0.0018 18.3 1.6 17 80-96 26-42 (45)
84 TIGR00023 acyl-phosphate glyce 20.2 2.2E+02 0.0047 22.0 4.4 32 48-79 7-39 (196)
85 PRK10692 hypothetical protein; 20.0 2.4E+02 0.0053 18.9 3.9 22 53-74 49-70 (92)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.8e-29 Score=194.42 Aligned_cols=144 Identities=32% Similarity=0.627 Sum_probs=138.6
Q ss_pred chhhhhHHHHHHH-HHHHHHHHhcccCchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCch
Q 030278 3 RCFDLVRFSMVIC-RAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYP 81 (180)
Q Consensus 3 ~~~~~~~~~~~~~-f~~~~~~~~~~~~P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~ 81 (180)
+++++++..++++ |++.++....+++|++++++++|.+||++.|.+++++|+++|+.+.|+++|+++|++.+++.++++
T Consensus 40 ~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~~~~~~~ 119 (223)
T COG0398 40 EWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKE 119 (223)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccH
Confidence 6788999899999 777888888889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHh
Q 030278 82 QFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 146 (180)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~ 146 (180)
+.+|.++..+|+|++.+++.|++|++|++++||++|.+++|+++|.+++.+|++|+++.|+++|+
T Consensus 120 ~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 120 KVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred HHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.95 E-value=2.9e-27 Score=183.89 Aligned_cols=150 Identities=19% Similarity=0.333 Sum_probs=135.9
Q ss_pred hhhhHHHHHHHHHHHHHHH---hcccCchHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Q 030278 5 FDLVRFSMVICRAVAYIPL---TILAVPASVLTLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISK 76 (180)
Q Consensus 5 ~~~~~~~~~~~f~~~~~~~---~~~~~P~~~~~~~~G~~-----~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~ 76 (180)
++...+....+|...+.+. ..+|+|+++++..+|++ .+++...+.+++|+++||.++|++||+.|++..+++
T Consensus 10 ~~~~~~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~ 89 (208)
T COG0586 10 IQEGSLGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKL 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhh
Confidence 3344688888999999887 77899999999999998 458899999999999999999999999999888766
Q ss_pred hc----CchHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhcccc
Q 030278 77 LK----DYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLS 152 (180)
Q Consensus 77 ~~----~~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~ 152 (180)
.+ ++++++|.|++++|||.++++++||+|++++. +++.||++|||+++|...|++|+++|+.++++.|+.+++..
T Consensus 90 ~~~~~~~~~~l~~a~~~f~r~G~~~vf~~RFip~vRt~-ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~ 168 (208)
T COG0586 90 WSYRLLKRKKLDKAELLFERHGLFAIFLGRFIPGVRTL-VPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVI 168 (208)
T ss_pred hhhccCCHHHHHHHHHHHHHcCchhhhhhcccchhHhh-hhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 55 46789999999999999999999999999885 99999999999999999999999999999999999999877
Q ss_pred ccc
Q 030278 153 DVT 155 (180)
Q Consensus 153 ~~~ 155 (180)
+..
T Consensus 169 ~~~ 171 (208)
T COG0586 169 DVL 171 (208)
T ss_pred HHH
Confidence 643
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.93 E-value=3.6e-25 Score=158.13 Aligned_cols=120 Identities=36% Similarity=0.686 Sum_probs=111.3
Q ss_pred CchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHH---HHHHHHccchhhhHHHhhc
Q 030278 28 VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 104 (180)
Q Consensus 28 ~P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~l~r~~ 104 (180)
+|++++++++|.++|++.+++++++|+++|+.++|+++|+.+++..+++..++++.++ .++.++|||.+.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999997777776665555555 8889999999999999999
Q ss_pred CCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhh
Q 030278 105 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 147 (180)
Q Consensus 105 P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~ 147 (180)
|++|.+++|+++|++|+|+++|+.++.+|.+||+.+++++|+.
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.93 E-value=5.7e-25 Score=172.36 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=125.2
Q ss_pred hhhhHHH-HHHHHHHHHHHH---hcccCchHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Q 030278 5 FDLVRFS-MVICRAVAYIPL---TILAVPASVLTLGGGYLFG-------LPVGFVADSIGATIGAGAAFLLGRTIGKPFV 73 (180)
Q Consensus 5 ~~~~~~~-~~~~f~~~~~~~---~~~~~P~~~~~~~~G~~~g-------~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~ 73 (180)
+++++.+ ..++|+..+.+. ..+++|++++.+++|.+.+ ++..++.+++|+++||.++|++||+.|++..
T Consensus 22 ~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 22 VAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 3444543 455888888876 4467899999999998743 5678999999999999999999999999877
Q ss_pred HHh---hcCchHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhcc
Q 030278 74 ISK---LKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 150 (180)
Q Consensus 74 ~~~---~~~~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~ 150 (180)
+++ ..++++++|.+++++|||.+.+++.|++|++|.. +|+.+|++|||+++|+..+.+|+++|+..++.+|+.+++
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R~~-~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~ 180 (219)
T PRK10847 102 SNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTF-APFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT 180 (219)
T ss_pred hccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchHhH-HHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 532 2235678999999999999999999999988865 999999999999999999999999999999999999987
Q ss_pred cc
Q 030278 151 LS 152 (180)
Q Consensus 151 ~~ 152 (180)
..
T Consensus 181 ~~ 182 (219)
T PRK10847 181 LP 182 (219)
T ss_pred CH
Confidence 54
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=1.8e-16 Score=117.82 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHhcccCchHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc-CchHHH
Q 030278 7 LVRFSMVICRAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK-DYPQFR 84 (180)
Q Consensus 7 ~~~~~~~~~f~~~~~~~~~~~~P~~~~~~~~G~~-~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~-~~~~~~ 84 (180)
.+......+|+..|++.+++|+|+|++....-.. .++|.-.+++++|+++|+.++|++||...+...+++.. ++++.+
T Consensus 14 ~~~~a~~~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~ 93 (161)
T COG1238 14 SQAYAYAGLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALE 93 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHH
Confidence 5678889999999999999999999865433332 78999999999999999999999999998776655443 356777
Q ss_pred HHHH-HHHccchhhhHHHhhcCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhc
Q 030278 85 SVAL-AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 149 (180)
Q Consensus 85 ~~~~-~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~ 149 (180)
+.++ +.+|+|.+.+++.=+-| +| |+++.++|..|+|+.+|+....+|+..+....+++....+
T Consensus 94 ~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 94 KLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7776 88999999999998877 88 8899999999999999999999999999999888877554
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=4.4e-15 Score=118.94 Aligned_cols=158 Identities=27% Similarity=0.478 Sum_probs=134.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcccCch-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCch
Q 030278 3 RCFDLVRFSMVICRAVAYIPLTILAVPA-SVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYP 81 (180)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~P~-~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~ 81 (180)
++.+++.......|++.+.....+.+|| ....+.+|.+||.|.|.++++.....|++.+|.+.+..+|+++.++++++.
T Consensus 87 ~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~ 166 (275)
T KOG3140|consen 87 KYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKI 166 (275)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHH
Confidence 3456677788889999999999999996 458899999999999999999999999999999999999999998887643
Q ss_pred HHHHHHHHHHccc-hhhhHHHhhcCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhccccccccCCcc
Q 030278 82 QFRSVALAIQRSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNE 160 (180)
Q Consensus 82 ~~~~~~~~~~~~g-~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~~~~~~~~ 160 (180)
+.-+..-..+|++ +..+...|..|+.|+.+.|+++++.+++.+.|+++++.|.+|.+.++.-.|+..+++.+..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~~ 246 (275)
T KOG3140|consen 167 AFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFSW 246 (275)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccCC
Confidence 3333333344555 666899999999999999999999999999999999999999999999999988887776654443
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.70 E-value=0.0011 Score=47.22 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChH-----HHHHhhcC-chHHHHHHHHHHccchhhhHHHhhcCCCC---hhH
Q 030278 41 FGLPVGFVADSIGATIGAGAAFLLGRTIGKP-----FVISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNM 111 (180)
Q Consensus 41 ~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~g~~~~~l~r~~P~~p---~~~ 111 (180)
.+++...+.+.+|+++.....+..-++.-+- ..++..++ +++.+|-++..||+|+..+.+.-.+| .| ...
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 5688999999999998877776666655331 11111111 23556677888999999888877777 55 455
Q ss_pred HHHHhhccCCChhhHHHHHHHhhHHHHH
Q 030278 112 LNYLLSVTPVPLLEYMLASWIGMMPITL 139 (180)
Q Consensus 112 ~~~~aG~~~~~~~~f~~~~~ig~~~~~~ 139 (180)
-+.++-+.+++.++=+.+..+|.+....
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999887654
No 8
>PRK01844 hypothetical protein; Provisional
Probab=89.76 E-value=1.9 Score=27.71 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 030278 43 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 75 (180)
Q Consensus 43 ~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~ 75 (180)
.|...++..++..+|...+|+++|+.-++-+++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888999999999999886554443
No 9
>PRK00523 hypothetical protein; Provisional
Probab=88.54 E-value=2.5 Score=27.18 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 030278 44 PVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 75 (180)
Q Consensus 44 ~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~ 75 (180)
+..+++..++..+|...+|+++|+.-++-+++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778889999999999886654443
No 10
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.55 E-value=11 Score=27.85 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcccCchHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHH-HHHHHHHHhCh
Q 030278 14 ICRAVAYIPLTILAVPASVLTLGGGYLFG----------LPVGFVADSIGATIGAG-AAFLLGRTIGK 70 (180)
Q Consensus 14 ~~f~~~~~~~~~~~~P~~~~~~~~G~~~g----------~~~~~l~~~~g~~lg~~-~~y~igr~~~~ 70 (180)
.+|++-++....+.+|+..+..++-..++ +|....+.++-.+..|. .++|-.|++|.
T Consensus 11 al~lvg~vGlv~PaiPs~lli~~G~l~y~~gf~~~~s~~f~~v~~lvtlli~~aD~vA~~~g~kr~Gg 78 (160)
T COG2839 11 ALFLVGFVGLVYPAIPSTLLIFAGFLAYGFGFQIYLSGVFWLVMALVTLLIIAADYVANIWGVKRYGG 78 (160)
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Confidence 56777777777777998888776644443 45545555555555444 44555555543
No 11
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=85.15 E-value=4.5 Score=29.92 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030278 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (180)
Q Consensus 30 ~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~ 61 (180)
++...+++|.++||..|.+...+|..++|.+.
T Consensus 38 ~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 38 GSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999998844
No 12
>PRK11677 hypothetical protein; Provisional
Probab=84.20 E-value=2.5 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 030278 47 FVADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 47 ~l~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
.+++.+|.++|..++|+++|...++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 3566788888999999999986543
No 13
>COG2426 Predicted membrane protein [Function unknown]
Probab=79.90 E-value=19 Score=25.92 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----HhhcC---------chHHHHHHHHHHccchhhhHHHhhcCCC
Q 030278 41 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI----SKLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLL 107 (180)
Q Consensus 41 ~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~g~~~~~l~r~~P~~ 107 (180)
++++.+...+.+|...=+.+-+.+-+...+ ... +++++ |...+|.....||+|+..+.+---+| .
T Consensus 18 ~~~~Eal~~silGvL~l~~lL~~~l~~id~-im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIP-L 95 (142)
T COG2426 18 LSPLEALLLSILGVLPLSLLLPLLLDPIDR-IMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIP-L 95 (142)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeecc-C
Confidence 678888888888865555555554444322 111 11111 11223444557889988887766667 5
Q ss_pred Chh---HHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHH
Q 030278 108 PFN---MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVG 145 (180)
Q Consensus 108 p~~---~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G 145 (180)
|.. =-..+|-..++|.++=+.+-.+|..+...+.+..+
T Consensus 96 P~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s 136 (142)
T COG2426 96 PGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPS 136 (142)
T ss_pred CCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhc
Confidence 543 13455667889999888888888887766665544
No 14
>PRK09609 hypothetical protein; Provisional
Probab=79.06 E-value=29 Score=28.81 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 030278 32 VLTLGGGYLFGLPVGFVADSIGATIGA 58 (180)
Q Consensus 32 ~~~~~~G~~~g~~~~~l~~~~g~~lg~ 58 (180)
+...++|++|||+.|.+...+...+|.
T Consensus 45 IPviI~G~LFGPv~G~ivG~lsDLLs~ 71 (312)
T PRK09609 45 LPIKITGFIFGPIVGFFTGLLSDLISF 71 (312)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 457899999999998887777766553
No 15
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=78.73 E-value=25 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030278 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (180)
Q Consensus 30 ~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~ 61 (180)
++....++|.++|||.+.+...+++.+++...
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999988887653
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.41 E-value=12 Score=23.85 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 030278 43 LPVGFVADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 43 ~~~~~l~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
.|.+.+...++...|-..+|+++|+.-.+
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777889999987544
No 17
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=77.24 E-value=8.8 Score=30.04 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCch
Q 030278 45 VGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYP 81 (180)
Q Consensus 45 ~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~ 81 (180)
.......+....||..+|..||++||+ ...+.+.+|
T Consensus 130 ~~~~~~i~~~~~gD~~A~l~G~~fGk~-~~~~~sp~K 165 (259)
T PF01148_consen 130 PLALIGILILGIGDSFAYLVGRRFGKH-LAPKISPKK 165 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCCCCCC
Confidence 344566777789999999999999987 333344333
No 18
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=76.80 E-value=7.8 Score=24.35 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhChHHHH
Q 030278 50 DSIGATIGAGAAFLLGRTIGKPFVI 74 (180)
Q Consensus 50 ~~~g~~lg~~~~y~igr~~~~~~~~ 74 (180)
..++..+|..++|+++|+.-++-++
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLK 27 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999988655444
No 19
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=75.03 E-value=2.2 Score=34.38 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 030278 46 GFVADSIGATIGAGAAFLLGRTIGKPFVISKLK 78 (180)
Q Consensus 46 ~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~ 78 (180)
-.++.+++...+|+.+|..||++|+++...+.+
T Consensus 135 ~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iS 167 (265)
T COG0575 135 LLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKIS 167 (265)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCC
Confidence 356677788899999999999999876544443
No 20
>PRK10847 hypothetical protein; Provisional
Probab=74.00 E-value=18 Score=28.15 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHccchhh---hHHHhh-------cCCCChhHHHHHhhcc------CCChhhHHHHHHHhhHHHHHHHHHHHhhh
Q 030278 85 SVALAIQRSGFKI---VLLLRL-------VPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 148 (180)
Q Consensus 85 ~~~~~~~~~g~~~---~~l~r~-------~P~~p~~~~~~~aG~~------~~~~~~f~~~~~ig~~~~~~~~~~~G~~~ 148 (180)
..++.++++|.+. +++.-+ .|++|.+.+-..+|.. .+++..-+..+.+|+..-..+..++|...
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777543 333332 4678988777777743 26777778888999999999999999876
Q ss_pred cc
Q 030278 149 KD 150 (180)
Q Consensus 149 ~~ 150 (180)
++
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 64
No 21
>PRK13661 hypothetical protein; Provisional
Probab=73.05 E-value=7.3 Score=29.74 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=29.2
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 030278 29 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 61 (180)
Q Consensus 29 P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~ 61 (180)
|++.+..+.+.+||+..|.+...+|..++|.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 356788999999999999999999999998863
No 22
>COG1238 Predicted membrane protein [Function unknown]
Probab=72.76 E-value=17 Score=27.12 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHHccchhhhHHHhh-----cCCCChhHHHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 030278 87 ALAIQRSGFKIVLLLRL-----VPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 154 (180)
Q Consensus 87 ~~~~~~~g~~~~~l~r~-----~P~~p~~~~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~~~~~ 154 (180)
+...++++...+++.-| .| +|.++.-...-+.+.+.+.+...+.+|+.+-++.--++|+...+..+.
T Consensus 11 ~~~~~~~a~~~Lf~vaF~eat~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 11 SLMSQAYAYAGLFIVAFLEATLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 34445666666665443 48 888877777777779999999999999999999999999988876655
No 23
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.99 E-value=11 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 030278 50 DSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 50 ~~~g~~lg~~~~y~igr~~~~~ 71 (180)
+.+|.++|..++|+++|...++
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677888888889999887654
No 24
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=67.13 E-value=4.1 Score=33.27 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCch
Q 030278 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYP 81 (180)
Q Consensus 48 l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~ 81 (180)
+...+-...+|+..|..||.+||+++-++++-+|
T Consensus 155 l~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkK 188 (285)
T PRK11624 155 LYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGK 188 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCC
Confidence 3444446678999999999999876655555433
No 25
>PF14163 SieB: Superinfection exclusion protein B
Probab=65.62 E-value=39 Score=24.57 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=22.1
Q ss_pred HhcccCchHHHHHHHH----hhhhhHHHHHHHHHHHHHHHH
Q 030278 23 LTILAVPASVLTLGGG----YLFGLPVGFVADSIGATIGAG 59 (180)
Q Consensus 23 ~~~~~~P~~~~~~~~G----~~~g~~~~~l~~~~g~~lg~~ 59 (180)
...++.|.+.+..+.- ..+++|.+.......+.+-+.
T Consensus 10 ~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~ 50 (151)
T PF14163_consen 10 GLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQ 50 (151)
T ss_pred HHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHH
Confidence 3445678777665544 457788887665554444333
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=63.03 E-value=67 Score=26.70 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc-CchHHHHHHHHHHccchhhhHHHhhcC----CCChhHHHHHh
Q 030278 42 GLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK-DYPQFRSVALAIQRSGFKIVLLLRLVP----LLPFNMLNYLL 116 (180)
Q Consensus 42 g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~r~~P----~~p~~~~~~~a 116 (180)
.-|.|....++=++..-.+-+.+|+..-++ ++ ++..+.+-.+.+||+-++++.+--.+| +.|.. .....
T Consensus 196 rSW~gi~~~T~iS~~Si~~y~vlg~~I~~k-----L~~~~~~mS~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~-~~wy~ 269 (310)
T PF10319_consen 196 RSWIGIIILTIISSYSIILYFVLGYKIMKK-----LNKMSSTMSKKTKRLQRQLFKALIVQTVIPICVSFSPCV-LSWYG 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhchhhhCHhHHHHHHHHHHHHHHHHHhHHHHhhccHH-HHHhH
Confidence 368888888877777777777778765433 32 222333333345555555555444444 45675 44555
Q ss_pred hccCCCh---hhHHHHHHHhhHH
Q 030278 117 SVTPVPL---LEYMLASWIGMMP 136 (180)
Q Consensus 117 G~~~~~~---~~f~~~~~ig~~~ 136 (180)
.+.+++. -.+.-+.+++..|
T Consensus 270 pif~i~~~~~~n~~~~iAls~FP 292 (310)
T PF10319_consen 270 PIFGIDLGRWNNYFSVIALSAFP 292 (310)
T ss_pred HHHcCChhHHHHHHHHHHHHHcc
Confidence 5555544 4555555555554
No 27
>PRK10527 hypothetical protein; Provisional
Probab=62.97 E-value=38 Score=24.17 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHhcccCchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHH-HHHHHHc
Q 030278 21 IPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS-VALAIQR 92 (180)
Q Consensus 21 ~~~~~~~~P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~-~~~~~~~ 92 (180)
+....+.+|.+++.+++.+.| +| +.+..++++.+++.+.. ++++-|+
T Consensus 19 iGi~LPlLPTTPFlLLAa~cf-----------------------aR--sSpR~~~WL~~h~~fGp~i~~w~~~ 66 (125)
T PRK10527 19 LGVVLPLLPTTPFILLAAWCF-----------------------AR--SSPRFHAWLLYRSWFGSYLRHWQQH 66 (125)
T ss_pred HHHhccCCCCcHHHHHHHHHH-----------------------Hc--CCHHHHHHHHcCchhhHHHHHHHHC
Confidence 334455578889888877554 23 44566777766665544 4444444
No 28
>COG4732 Predicted membrane protein [Function unknown]
Probab=56.90 E-value=33 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.239 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhcccC--------ch-HHHHHHHHhhhhhHHHHHHHHHHHHH
Q 030278 5 FDLVRFSMVICRAVAYIPLTILAV--------PA-SVLTLGGGYLFGLPVGFVADSIGATI 56 (180)
Q Consensus 5 ~~~~~~~~~~~f~~~~~~~~~~~~--------P~-~~~~~~~G~~~g~~~~~l~~~~g~~l 56 (180)
++.+......+++.+-+....+.+ |. ..+..++|...|||++...+.+-+.+
T Consensus 6 m~~rklaila~liaL~vvLs~iif~vgptkaaP~qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 6 MQVRKLAILAMLIALDVVLSIIIFPVGPTKAAPMQHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred hhHHHHHHHHHHHHHHHhheeeeEecCccccCcHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 455667777777777766654433 43 46899999999999988777665543
No 29
>COG4720 Predicted membrane protein [Function unknown]
Probab=55.92 E-value=28 Score=26.43 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcccCc------hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030278 10 FSMVICRAVAYIPLTILAVP------ASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLL 64 (180)
Q Consensus 10 ~~~~~~f~~~~~~~~~~~~P------~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~i 64 (180)
....+.+++........|.| ++....++..+||+-.|.+...+|..+=|.++++-
T Consensus 14 i~aALvvvlg~~i~IPtp~~~~~i~L~da~i~las~lfGs~~G~lvg~iG~al~Dll~gy~ 74 (177)
T COG4720 14 IGAALVVVLGRLIRIPTPIPNGFLTLGDAGIALASFLFGSRAGALVGGLGHALKDLLSGYP 74 (177)
T ss_pred HHHHHHHHHHheeEecCCCCCCeeeHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCCc
Confidence 34444444444444444554 25688899999999999999999999988888533
No 30
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.80 E-value=46 Score=20.42 Aligned_cols=10 Identities=0% Similarity=0.358 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 030278 82 QFRSVALAIQ 91 (180)
Q Consensus 82 ~~~~~~~~~~ 91 (180)
+.++.++..+
T Consensus 56 ~l~~le~e~~ 65 (68)
T PF06305_consen 56 ELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 31
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=54.16 E-value=1.2e+02 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHccchhhhH
Q 030278 53 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVL 99 (180)
Q Consensus 53 g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (180)
.+.+|+.+.|.++-+.++.. .+ .+++.|++++|.+...++
T Consensus 43 ~~ligai~~~li~~~~~~~~-----~~--~~~~le~~i~k~~~~~il 82 (356)
T COG4956 43 DALIGAIIFFLISFWFGKYV-----LN--WLKRLEEQIRKLPVTTIL 82 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHhcCHHHHH
Confidence 34566666666665554321 11 456777778777655543
No 32
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.97 E-value=58 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh
Q 030278 45 VGFVADSIGATIGAGAAFLLGRTIGK 70 (180)
Q Consensus 45 ~~~l~~~~g~~lg~~~~y~igr~~~~ 70 (180)
....+..+|.++|-.++|.+.|...+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34567788899999999999997654
No 33
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=52.99 E-value=22 Score=26.12 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 030278 30 ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 60 (180)
Q Consensus 30 ~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~ 60 (180)
+.....++|+++||+.|.+...+...++...
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888876666554
No 34
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.43 E-value=79 Score=22.14 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=7.9
Q ss_pred HHHHHHHHHccc
Q 030278 83 FRSVALAIQRSG 94 (180)
Q Consensus 83 ~~~~~~~~~~~g 94 (180)
.++.|...++++
T Consensus 83 ~r~l~~~~~~~~ 94 (111)
T TIGR03750 83 YRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHcC
Confidence 466776666665
No 35
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=49.17 E-value=96 Score=24.48 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcc--------chhhhHHHhhcCCCChhHHHHHhhccC
Q 030278 81 PQFRSVALAIQRS--------GFKIVLLLRLVPLLPFNMLNYLLSVTP 120 (180)
Q Consensus 81 ~~~~~~~~~~~~~--------g~~~~~l~r~~P~~p~~~~~~~aG~~~ 120 (180)
|++++.-+++||+ ++.+..+..+.. .-..+-++-.|+++
T Consensus 77 k~in~~g~~~~~~~~~~~f~e~fVta~lLfcig-~m~I~G~l~~GltG 123 (228)
T COG1811 77 KRINNLGQKLEDKPGHGSFAEGFVTAILLFCIG-SMGILGSLNEGLTG 123 (228)
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHhc-ccchhhHHHHhhcC
Confidence 3445555555542 566666666665 34556777788876
No 36
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=48.64 E-value=1.1e+02 Score=22.66 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHhcccCchHH-HHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 030278 8 VRFSMVICRAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAG-AAFLLGRTI 68 (180)
Q Consensus 8 ~~~~~~~~f~~~~~~~~~~~~P~~~-~~~~~G~~~g~~~~~l~~~~g~~lg~~-~~y~igr~~ 68 (180)
+.|...==|.-.+..+...|=|... +....|+..+-+.|.+.+++|.++=+. +...+++.+
T Consensus 35 ~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~ 97 (169)
T PF02417_consen 35 RGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLY 97 (169)
T ss_pred cCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566666777777666666 778888888888888888888766444 455555443
No 37
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=48.23 E-value=70 Score=23.54 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 030278 48 VADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 48 l~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
....+++++|..++|++.|++.|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999988654
No 38
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=45.79 E-value=1.1e+02 Score=21.75 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.5
Q ss_pred HHHHHHHHHccc
Q 030278 83 FRSVALAIQRSG 94 (180)
Q Consensus 83 ~~~~~~~~~~~g 94 (180)
.++.|..+++++
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 356666666665
No 39
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=45.56 E-value=1.7e+02 Score=24.81 Aligned_cols=61 Identities=11% Similarity=-0.103 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHhcccCchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 030278 7 LVRFSMVICRAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAG-AAFLLGRT 67 (180)
Q Consensus 7 ~~~~~~~~~f~~~~~~~~~~~~P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~-~~y~igr~ 67 (180)
++.|...==|.-.+...+..|=|...+....|+..+-+.|.+.+++|.++=+. +.+.+.+.
T Consensus 235 ~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~ 296 (368)
T TIGR00937 235 RGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPY 296 (368)
T ss_pred ccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566667777777767666777888888889999999999887554 44444443
No 40
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=45.37 E-value=92 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=21.2
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHhhhcc
Q 030278 124 LEYMLASWIGMMPITLALVYVGTTLKD 150 (180)
Q Consensus 124 ~~f~~~~~ig~~~~~~~~~~~G~~~~~ 150 (180)
..+.....++...|...+.+.+....+
T Consensus 136 ~~~~~~~~~~~~~w~~~~~~~~~~~~~ 162 (191)
T PF01810_consen 136 LVFILGIFLGSLLWFLLLALLGSRLRR 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899889888887665
No 41
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=44.69 E-value=1e+02 Score=21.21 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030278 42 GLPVGFVADSIGATIGAGAAFLLGRT 67 (180)
Q Consensus 42 g~~~~~l~~~~g~~lg~~~~y~igr~ 67 (180)
++|.+.+++.....+.+.+.++.+++
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~ 95 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRR 95 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778777777777666666666654
No 42
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=42.83 E-value=1.5e+02 Score=22.75 Aligned_cols=100 Identities=17% Similarity=0.028 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHH-----HHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCC
Q 030278 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQF-----RSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVP 122 (180)
Q Consensus 48 l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~ 122 (180)
..+.+.+++|+.++-++.++.||..-++++++..+. ++.++..+...-......-+--++|. +=++..=..++.
T Consensus 57 ~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a~~~f~r~G~~~vf~~RFip~-vRt~ip~~AG~~ 135 (208)
T COG0586 57 WLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFERHGLFAIFLGRFIPG-VRTLVPIVAGMS 135 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHHHHHHHHcCchhhhhhcccch-hHhhhhHhhhhc
Confidence 356667788888888888888887666666654331 11222222234444555555556666 366666666777
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHhhhc
Q 030278 123 LLEYMLASWIGMMPITLALVYVGTTLK 149 (180)
Q Consensus 123 ~~~f~~~~~ig~~~~~~~~~~~G~~~~ 149 (180)
-.++-.-... ..+-+++++..=...+
T Consensus 136 ~m~~~~F~~~-n~~ga~iW~~~~~~lG 161 (208)
T COG0586 136 KMPLRRFLLY-NILGALLWALVLTLLG 161 (208)
T ss_pred cCChHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7776666555 4455555554444333
No 43
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=41.97 E-value=37 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 030278 31 SVLTLGGGYLFGLPVGFVADSIGATIG 57 (180)
Q Consensus 31 ~~~~~~~G~~~g~~~~~l~~~~g~~lg 57 (180)
-+...+.|++|||+.|.+...++..+|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999888
No 44
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.52 E-value=45 Score=21.33 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchH
Q 030278 49 ADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQ 82 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~ 82 (180)
+..++.+++-..+...|.++.|+-..+.+++||.
T Consensus 5 lail~ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4456677777778888888888888888877653
No 45
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=40.55 E-value=1.4e+02 Score=26.91 Aligned_cols=84 Identities=13% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh----Ch------HHHHHhhcC---------chHHHHHHHHHHccchhhhHHHhhcCCCCh
Q 030278 49 ADSIGATIGAGAAFLLGRTI----GK------PFVISKLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLLPF 109 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~----~~------~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~ 109 (180)
.+.+|..+|..+.|+++-.- || +-+||-+++ +|.+.|.-+...|+..+-..+--++|.+--
T Consensus 522 ~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T~aAl~eMi~P~llavl~P 601 (703)
T COG3808 522 YVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVDILTKAALKEMIIPGLLAVLAP 601 (703)
T ss_pred HHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44566677777777665432 22 112222322 456778777777777776665555552211
Q ss_pred hHHHHHhhccCCChhhHHHHHHHhhHHHH
Q 030278 110 NMLNYLLSVTPVPLLEYMLASWIGMMPIT 138 (180)
Q Consensus 110 ~~~~~~aG~~~~~~~~f~~~~~ig~~~~~ 138 (180)
.++.+..| ...+-+.++|.+..-
T Consensus 602 lvvgli~G------~~aLgg~L~G~iv~G 624 (703)
T COG3808 602 LVVGLILG------FAALGGLLLGVIVNG 624 (703)
T ss_pred HHHHHHhh------HHHHHHHHHHHHHHh
Confidence 12333333 455555555555443
No 46
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=39.25 E-value=2.1e+02 Score=23.19 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=55.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHccchhhhHHHhhcCC---CChhHH
Q 030278 36 GGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL---LPFNML 112 (180)
Q Consensus 36 ~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~r~~P~---~p~~~~ 112 (180)
..|..+|+..-++...+-...-....|..|++.|++.+++. + +..++++.+..+-=|...+ +-+++- +... .
T Consensus 128 ~~Gn~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~-~~~~~~i~~~asilGl~vv--Gal~as~V~v~~~-l 202 (264)
T PF03613_consen 128 LQGNILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-Q-SGLLQKITEAASILGLMVV--GALIASYVNVSTP-L 202 (264)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHH--HHHHHHeEEEeee-E
Confidence 44555666666666556667778889999999999988876 4 4567776665555443332 223220 1111 2
Q ss_pred HHHhhccCCChhhHHHHHHHhhHH
Q 030278 113 NYLLSVTPVPLLEYMLASWIGMMP 136 (180)
Q Consensus 113 ~~~aG~~~~~~~~f~~~~~ig~~~ 136 (180)
.+..|-..++....+=.-+-+-+|
T Consensus 203 ~~~~g~~~~~lQ~~lD~I~P~lLp 226 (264)
T PF03613_consen 203 TITIGGVTISLQEILDGIMPGLLP 226 (264)
T ss_pred EEecCCceeeHHHhHHhHHhhHHH
Confidence 233444556666644444443333
No 47
>PLN02953 phosphatidate cytidylyltransferase
Probab=38.83 E-value=18 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030278 47 FVADSIGATIGAGAAFLLGRTIGKPFVI 74 (180)
Q Consensus 47 ~l~~~~g~~lg~~~~y~igr~~~~~~~~ 74 (180)
+++..+.....|...|..||.+||+.+.
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~ 298 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3455666777899999999999986554
No 48
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.17 E-value=81 Score=19.90 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhChHH
Q 030278 50 DSIGATIGAGAAFLLGRTIGKPF 72 (180)
Q Consensus 50 ~~~g~~lg~~~~y~igr~~~~~~ 72 (180)
..+|+.+|+.+++++.-.-|++.
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~ 27 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKET 27 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHH
Confidence 35678888888888877777653
No 49
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=33.23 E-value=64 Score=25.18 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHH
Q 030278 45 VGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 84 (180)
Q Consensus 45 ~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~ 84 (180)
....+.......||.++=.+||++||. .++.+++|.++
T Consensus 114 ~~~~~~I~~l~~GD~lAsiiG~~~G~~--~~~~~~~KSle 151 (216)
T COG0170 114 EVAIAGILVLALGDGLASIIGKRYGRH--KRILGNGKSLE 151 (216)
T ss_pred HHHHHHHHHHHHhhHHHHHhCcccCcc--ccccCCCCchh
Confidence 556667777788999999999999986 23344444333
No 50
>PRK04897 heat shock protein HtpX; Provisional
Probab=32.95 E-value=2.3e+02 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030278 45 VGFVADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 45 ~~~l~~~~g~~lg~~~~y~igr~~ 68 (180)
.+...+.+.......+.|+.+.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (298)
T PRK04897 41 GGLIIALIIGVIYALIMIFQSTNV 64 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444555555566677777777654
No 51
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=31.97 E-value=1.4e+02 Score=20.89 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHccc
Q 030278 48 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 94 (180)
Q Consensus 48 l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (180)
..+.+-+++|+.+...+--.+- +.+.+++++.+..++..++.+|+.
T Consensus 17 ~~~~~~~~lGN~l~vp~i~~~~-~~i~~~l~~~~~~~~~~~~~~~k~ 62 (121)
T PF06695_consen 17 WEAFLLAFLGNILPVPFILLFL-DKILKWLKRKPWLKKFYEWLEKKA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566677888887766655544 345566665566666666555443
No 52
>PLN02594 phosphatidate cytidylyltransferase
Probab=31.88 E-value=37 Score=28.58 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhhcCch
Q 030278 51 SIGATIGAGAAFLLGRTIGKPFVISKLKDYP 81 (180)
Q Consensus 51 ~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~ 81 (180)
..-....|..+|..||.+||+.+- +++-+|
T Consensus 131 ~~lV~~nDi~AY~~G~~fGk~kL~-~iSPkK 160 (342)
T PLN02594 131 ASLIVINDIAAYLFGFFFGRTPLI-KLSPKK 160 (342)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCCC-ccCCCC
Confidence 344677899999999999997554 444333
No 53
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.84 E-value=1.8e+02 Score=20.58 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 030278 47 FVADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 47 ~l~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
-....+++.+|-.+.|++.|++.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777888888888888887554
No 54
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.12 E-value=1e+02 Score=22.69 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhChH
Q 030278 49 ADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
...++..+|-.++|.+.|++.++
T Consensus 105 ~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 105 AALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777788888888876543
No 55
>PRK11677 hypothetical protein; Provisional
Probab=31.08 E-value=1.3e+02 Score=21.84 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030278 43 LPVGFVADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 43 ~~~~~l~~~~g~~lg~~~~y~igr~~ 68 (180)
|..+++...+|.++|..+..+..+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~ 28 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKL 28 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh
Confidence 44556677888899999888877665
No 56
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.01 E-value=2e+02 Score=20.35 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=13.0
Q ss_pred hHHHHHhhcCchHHHHHHHHHHc
Q 030278 70 KPFVISKLKDYPQFRSVALAIQR 92 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~ 92 (180)
.+..++++.+++.+.+.-+..++
T Consensus 43 SpRf~~WLl~~~~fg~~v~~~~e 65 (119)
T COG2832 43 SPRFHAWLLRHKYFGPYVRDWRE 65 (119)
T ss_pred CcHHHHHHHcCchhhHHHHHHHH
Confidence 35566666666666554444443
No 57
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=29.91 E-value=1.2e+02 Score=21.71 Aligned_cols=28 Identities=18% Similarity=-0.078 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 030278 44 PVGFVADSIGATIGAGAAFLLGRTIGKP 71 (180)
Q Consensus 44 ~~~~l~~~~g~~lg~~~~y~igr~~~~~ 71 (180)
+.-.......+.+++.+..++|.++++.
T Consensus 95 ~~~a~~y~~~sl~~gl~a~~lG~~l~~~ 122 (132)
T PRK14219 95 WSIAFLYVSCSILGGLIMSGLGYTLGDF 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666554
No 58
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.59 E-value=1.4e+02 Score=22.12 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhHHHHHH
Q 030278 33 LTLGGGYLFGLPVGFVA 49 (180)
Q Consensus 33 ~~~~~G~~~g~~~~~l~ 49 (180)
+.++.|.++++.++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (175)
T PRK14472 6 IILLSGGLLSPNPGLIF 22 (175)
T ss_pred hhhhcCCccCCCHHHHH
Confidence 34455556777665443
No 59
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.46 E-value=1.3e+02 Score=22.17 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=19.4
Q ss_pred ch-HHHHHHHHhhhhhHHHHHHHHHHH
Q 030278 29 PA-SVLTLGGGYLFGLPVGFVADSIGA 54 (180)
Q Consensus 29 P~-~~~~~~~G~~~g~~~~~l~~~~g~ 54 (180)
|. ..+..++|.+.|||.+...++.-+
T Consensus 29 P~QH~iNviaaVlLGP~ya~~~Af~~s 55 (150)
T PF09512_consen 29 PMQHMINVIAAVLLGPWYAVAMAFITS 55 (150)
T ss_pred hHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 53 468999999999998766555443
No 60
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.15 E-value=2.5e+02 Score=21.11 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCh-HHHHH-----hhcC-----chHHHHHHHHHHccchhhhHHHhhc
Q 030278 49 ADSIGATIGAGAAFLLGRTIGK-PFVIS-----KLKD-----YPQFRSVALAIQRSGFKIVLLLRLV 104 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~~~-~~~~~-----~~~~-----~~~~~~~~~~~~~~g~~~~~l~r~~ 104 (180)
.+.+|.++|..++-++-+.+.+ ++..+ ++++ +.+++++++..+++...++.+.||-
T Consensus 51 ~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~FY 117 (165)
T PF11286_consen 51 WNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRFY 117 (165)
T ss_pred eeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777777766666666543 33331 1221 1356777777888888888888764
No 61
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=27.49 E-value=2.8e+02 Score=21.17 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhccccccccCCcccchhhHHHHHHHHHh
Q 030278 126 YMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNEFSKTRWAFLIFGLVV 175 (180)
Q Consensus 126 f~~~~~ig~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 175 (180)
|..............+...++..++..+..++|-+.+.......++.++.
T Consensus 156 y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G 205 (214)
T PF11139_consen 156 YCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVG 205 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33333344444556677778877766665555554444444433444333
No 62
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=26.80 E-value=1.6e+02 Score=18.07 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHcc
Q 030278 80 YPQFRSVALAIQRS 93 (180)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (180)
+++++|+-+++||+
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 35677777777663
No 63
>PRK14400 membrane protein; Provisional
Probab=26.46 E-value=1.4e+02 Score=23.09 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCc
Q 030278 46 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (180)
Q Consensus 46 ~~l~~~~g~~lg~~-~~y~igr~~~~~~~~~~~~~~ 80 (180)
+.++..++-.+|+. .+|+++|...+..+|+.=+.|
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN 42 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGN 42 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCC
Confidence 44555667777876 889999986554455443333
No 64
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=25.64 E-value=2.2e+02 Score=19.39 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHccch
Q 030278 81 PQFRSVALAIQRSGF 95 (180)
Q Consensus 81 ~~~~~~~~~~~~~g~ 95 (180)
...+++.+.+++++.
T Consensus 66 ~~~d~v~~~l~~~gg 80 (102)
T PF06897_consen 66 ATEDKVDAALRKFGG 80 (102)
T ss_pred CCHHHHHHHHHhcCC
Confidence 345677777777663
No 65
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=25.61 E-value=2.5e+02 Score=20.51 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.8
Q ss_pred hcccCchH
Q 030278 24 TILAVPAS 31 (180)
Q Consensus 24 ~~~~~P~~ 31 (180)
..+|+||+
T Consensus 30 l~lPiPGs 37 (141)
T PRK04125 30 LPIPMPAS 37 (141)
T ss_pred cCCCCcHH
Confidence 44445544
No 66
>PRK03072 heat shock protein HtpX; Provisional
Probab=25.06 E-value=2.2e+02 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=15.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030278 36 GGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 36 ~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~ 68 (180)
+.|+++| ..+.+...+-......+.|+.+.+.
T Consensus 23 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~ 54 (288)
T PRK03072 23 FIGALFG-RTGLGIAVLIAVGMNAYVYWNSDKL 54 (288)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3455554 2333333344444556666666554
No 67
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=24.94 E-value=3.7e+02 Score=21.72 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHhhcC---chHH------HHHHHHH-HccchhhhHHHhhcCCCC
Q 030278 41 FGLPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKLKD---YPQF------RSVALAI-QRSGFKIVLLLRLVPLLP 108 (180)
Q Consensus 41 ~g~~~~~l~~~~g~~lg~~~~y~igr~~--~~~~~~~~~~~---~~~~------~~~~~~~-~~~g~~~~~l~r~~P~~p 108 (180)
.....+...+.++..+|-..+|.+.|+- ||+.++....- -|.. -..-... -..+++.+.++-..--.|
T Consensus 69 ~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~~~lP 148 (267)
T COG1177 69 NSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIVFALP 148 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Confidence 3456677788888899999999999862 23333322111 1111 1111112 356889999888887788
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHhh
Q 030278 109 FNMLNYLLSVTPVPLLEYMLASWIGM 134 (180)
Q Consensus 109 ~~~~~~~aG~~~~~~~~f~~~~~ig~ 134 (180)
+.+....+.+.+++..-=-.+.-+|+
T Consensus 149 ~v~~~v~a~l~~~d~~LeeAA~dLGA 174 (267)
T COG1177 149 FVVVVVSARLQGFDRSLEEAARDLGA 174 (267)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99888888888887643333333333
No 68
>PRK14407 membrane protein; Provisional
Probab=24.77 E-value=1.2e+02 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHHh
Q 030278 46 GFVADSIGATIGAG-AAFLLGRTIGKPFVISK 76 (180)
Q Consensus 46 ~~l~~~~g~~lg~~-~~y~igr~~~~~~~~~~ 76 (180)
+.+...+|-.+|+. .+|+++|...+..+|+.
T Consensus 7 ~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~ 38 (219)
T PRK14407 7 GAVGLAIAYLLGSTPTGYLAGKLLKGIDIREH 38 (219)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhCCCCCCcC
Confidence 44555667788886 88999998644335543
No 69
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=24.21 E-value=2.6e+02 Score=19.59 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030278 33 LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 33 ~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~ 68 (180)
.....|-.+|.+...+......++|..+.-..+++.
T Consensus 14 ~~i~v~~~iG~~~tll~vi~t~~lG~~llr~~g~~~ 49 (119)
T PF04186_consen 14 VLILVGSWIGFLWTLLLVILTAVLGIWLLRRQGRRA 49 (119)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667888888888887777766654444443
No 70
>PRK14402 membrane protein; Provisional
Probab=24.11 E-value=2.3e+02 Score=21.90 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHH-----------HHH-ccchhhhHHHhhcC
Q 030278 45 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVAL-----------AIQ-RSGFKIVLLLRLVP 105 (180)
Q Consensus 45 ~~~l~~~~g~~lg~~-~~y~igr~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~g~~~~~l~r~~P 105 (180)
...+...++-.+|+. .+|+++|..+.| +|+.=+.|.-.....+ ..+ -+|...+.+.+..+
T Consensus 4 ~~~l~~~~~YllGsip~~~~v~k~~g~D-iR~~GSgN~GatNv~R~~G~~~g~~v~l~D~lKG~l~v~l~~~~~ 76 (198)
T PRK14402 4 TAVLALLLAYLFGSIPAGAWVARTRGVD-IRKVGSGNSGATNVLRSLGKGPALVVAFFDVLKGGIAVLLARALG 76 (198)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCC-hhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445566667788886 889999975543 5544333321111111 122 25666777777665
No 71
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.11 E-value=1.3e+02 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 030278 47 FVADSIGATIGAGAAFLLGRTIGKPFV 73 (180)
Q Consensus 47 ~l~~~~g~~lg~~~~y~igr~~~~~~~ 73 (180)
++++.++.++|..++|.+.+...+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888777665443
No 72
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.92 E-value=2.3e+02 Score=18.87 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhChHHHH
Q 030278 53 GATIGAGAAFLLGRTIGKPFVI 74 (180)
Q Consensus 53 g~~lg~~~~y~igr~~~~~~~~ 74 (180)
+.++|+.+.-.=+|-.||+.+.
T Consensus 49 ~IFiGAllWL~GARigGrE~Va 70 (89)
T PF10762_consen 49 SIFIGALLWLVGARIGGREKVA 70 (89)
T ss_pred HHHHHHHHHHhcccccCcchhh
Confidence 3444444443333444665554
No 73
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=23.79 E-value=2.3e+02 Score=18.96 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 030278 41 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 74 (180)
Q Consensus 41 ~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~ 74 (180)
.|...+.....+.+.+|+.++-.+...++|..-+
T Consensus 10 ~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 10 AGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566667777777777777777777766543
No 74
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=23.64 E-value=4.5e+02 Score=22.23 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcccCchHH-HHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 030278 6 DLVRFSMVICRAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGA-GAAFLLGRTI 68 (180)
Q Consensus 6 ~~~~~~~~~~f~~~~~~~~~~~~P~~~-~~~~~G~~~g~~~~~l~~~~g~~lg~-~~~y~igr~~ 68 (180)
|++.|...==|.-.+..++..|=|..+ +....|+..+-+.|.+.+++|.++=+ .+.+.+++.+
T Consensus 25 ~~~~Wlt~~ef~~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~ 89 (368)
T TIGR00937 25 DERQWMSEASYNDLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAY 89 (368)
T ss_pred HhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555667777778887666555 66688888888888888888887643 4555555544
No 75
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=23.57 E-value=1.1e+02 Score=22.68 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=27.7
Q ss_pred hhhHHHhhcCCCChhH-HHHHhhccCCChhhHHHHHHHhhHHHHHHHHHHHhhhcc
Q 030278 96 KIVLLLRLVPLLPFNM-LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 150 (180)
Q Consensus 96 ~~~~l~r~~P~~p~~~-~~~~aG~~~~~~~~f~~~~~ig~~~~~~~~~~~G~~~~~ 150 (180)
..+.+.+.+| -|... .....|...-.+.-=+.+..--..|..++...++....+
T Consensus 45 ~~~al~q~~P-GP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~ 99 (169)
T PF02417_consen 45 EGLALAQALP-GPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSR 99 (169)
T ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888999 66653 333334443333333344444455555555555555444
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.27 E-value=1.5e+02 Score=21.11 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=6.1
Q ss_pred HHHHHHHHHh
Q 030278 59 GAAFLLGRTI 68 (180)
Q Consensus 59 ~~~y~igr~~ 68 (180)
.+.|++.|+-
T Consensus 83 li~y~irR~~ 92 (122)
T PF01102_consen 83 LISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 5667766553
No 77
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=22.24 E-value=2.3e+02 Score=21.86 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCc
Q 030278 49 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 80 (180)
Q Consensus 49 ~~~~g~~lg~~-~~y~igr~~~~~~~~~~~~~~ 80 (180)
...++-.+|+. .+|+++|...+..+|+.=+.|
T Consensus 8 ~~i~~YLlGsip~~~ii~k~~~~~DiR~~GSgN 40 (198)
T PRK00220 8 LILLAYLLGSIPFALLVGKLFGLPDPREHGSGN 40 (198)
T ss_pred HHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCC
Confidence 44567777886 889999987654466543333
No 78
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=22.15 E-value=4.8e+02 Score=24.33 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh----Ch------HHHHHhhcC---------chHHHHHHHHHHccchhhhHHHhhcCCCCh
Q 030278 49 ADSIGATIGAGAAFLLGRTI----GK------PFVISKLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLLPF 109 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~----~~------~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~ 109 (180)
...+|..+|+.+.|+++-.- || +-+||-+++ +|.++|.-+...|...+-+..--+++
T Consensus 510 ~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P~ll~---- 585 (682)
T PF03030_consen 510 YVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILPGLLA---- 585 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHHHHHH----
T ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhhhHHH----
Confidence 44566666777776665432 11 112222221 35666666666666655555433333
Q ss_pred hHHHHHhhcc-CCC-hhhHHHHHHHhhHHHHHHHHHHHhh
Q 030278 110 NMLNYLLSVT-PVP-LLEYMLASWIGMMPITLALVYVGTT 147 (180)
Q Consensus 110 ~~~~~~aG~~-~~~-~~~f~~~~~ig~~~~~~~~~~~G~~ 147 (180)
.+.|.+.|.. +.. .--++....++.+...+...-.|..
T Consensus 586 v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGA 625 (682)
T PF03030_consen 586 VLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGA 625 (682)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3445555542 311 1245555555566666655555644
No 79
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=21.94 E-value=64 Score=27.72 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC---h---H-HHHHh---hcC-----chHHHH----HHHHHHccchhhhHHHhhcCCCChh
Q 030278 50 DSIGATIGAGAAFLLGRTIG---K---P-FVISK---LKD-----YPQFRS----VALAIQRSGFKIVLLLRLVPLLPFN 110 (180)
Q Consensus 50 ~~~g~~lg~~~~y~igr~~~---~---~-~~~~~---~~~-----~~~~~~----~~~~~~~~g~~~~~l~r~~P~~p~~ 110 (180)
--.|..+|....|+..|..- . + ..+.. +++ .++.+| +++..+|-|+..+.+.--+|=.-+|
T Consensus 215 wg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfd 294 (440)
T KOG1109|consen 215 WGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFD 294 (440)
T ss_pred hccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchh
Confidence 34577899999999998741 1 1 01100 000 012333 3444455688888887777744466
Q ss_pred HHHHHhhccCCChhhHHHHHHHhhHHH
Q 030278 111 MLNYLLSVTPVPLLEYMLASWIGMMPI 137 (180)
Q Consensus 111 ~~~~~aG~~~~~~~~f~~~~~ig~~~~ 137 (180)
.....+|..-.|++.|+-++++|+...
T Consensus 295 laGitcghflvpfw~ffGaTLigKaii 321 (440)
T KOG1109|consen 295 LAGITCGHFLVPFWTFFGATLIGKAII 321 (440)
T ss_pred hcccccccccchHHHHhhHHHHHHHHH
Confidence 677777888899999999999998764
No 80
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=20.66 E-value=3.5e+02 Score=19.78 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030278 33 LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 33 ~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~ 68 (180)
.....|-..|.|..++...+.+++|..+.-..|+..
T Consensus 18 ~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~ 53 (148)
T PRK11463 18 VFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKT 53 (148)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667889998888888888877775544443
No 81
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=20.61 E-value=2.2e+02 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 030278 44 PVGFVADSIGATIGAGAAFLLGRTIGKPF 72 (180)
Q Consensus 44 ~~~~l~~~~g~~lg~~~~y~igr~~~~~~ 72 (180)
+...+.....+.+++.+.-++|+..++..
T Consensus 92 ~~~a~~y~~~s~~~gl~a~~lG~~l~~~~ 120 (129)
T PRK14231 92 WLLAVSYVLASFIGGLIMVKFGRMLSNKL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666667777766543
No 82
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=20.29 E-value=3.3e+02 Score=23.30 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhcccCchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHH
Q 030278 8 VRFSMVICRAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVA 87 (180)
Q Consensus 8 ~~~~~~~~f~~~~~~~~~~~~P~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~igr~~~~~~~~~~~~~~~~~~~~~ 87 (180)
+...+.+.-....+....+.+|.. +| .-|++.. .++..++-.+.|..+|-+-|-...++.++++-.+-.|
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~-----ag-~~G~i~~----li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~ 73 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQ-----AG-LGGLWVL----VLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVE 73 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-----HH-hCHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 334445555555566666777865 12 1133333 2333333334455555433222222222223445566
Q ss_pred HHHHccchhhhHHHhhcCCCChhHHHHHhhcc
Q 030278 88 LAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVT 119 (180)
Q Consensus 88 ~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~ 119 (180)
+.+-|.+-+.+.+..+.-+.+. ...|..+.+
T Consensus 74 ~~fGk~~G~ii~~lY~~~~~~i-~~aY~~~~~ 104 (397)
T TIGR00814 74 EHFGKNWGILITLLYFFAIYPI-LLIYSVAIT 104 (397)
T ss_pred HHcCHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6666665555555444442333 244444433
No 83
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=20.27 E-value=81 Score=18.30 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHccchh
Q 030278 80 YPQFRSVALAIQRSGFK 96 (180)
Q Consensus 80 ~~~~~~~~~~~~~~g~~ 96 (180)
+..+++++.+++++|++
T Consensus 26 ~~~L~k~~~wld~rgWw 42 (45)
T PF12123_consen 26 DAELDKFTAWLDERGWW 42 (45)
T ss_dssp HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcCcE
Confidence 35789999999999875
No 84
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=20.20 E-value=2.2e+02 Score=21.97 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcC
Q 030278 48 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKD 79 (180)
Q Consensus 48 l~~~~g~~lg~~-~~y~igr~~~~~~~~~~~~~ 79 (180)
+...+|-.+|+. .+|+++|...++.+|+.=+.
T Consensus 7 l~~~~~YLlGSip~~~~i~k~~~g~DiR~~GSg 39 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKILKGIDIREHGSG 39 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCchhcCCC
Confidence 344556677776 78999998755445554333
No 85
>PRK10692 hypothetical protein; Provisional
Probab=20.00 E-value=2.4e+02 Score=18.86 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhChHHHH
Q 030278 53 GATIGAGAAFLLGRTIGKPFVI 74 (180)
Q Consensus 53 g~~lg~~~~y~igr~~~~~~~~ 74 (180)
|.++|+.+.-.=+|-.||+.+.
T Consensus 49 ~IFiGAllWL~GArigGRE~Va 70 (92)
T PRK10692 49 SIFVGALLWLAGARVGGREQVA 70 (92)
T ss_pred HHHHHHHHHHhcccccCcchhh
Confidence 3444444443333444665544
Done!