Query 030278
Match_columns 180
No_of_seqs 110 out of 1025
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 57.9 40 0.0014 24.5 7.1 30 31-60 48-77 (189)
2 4ezc_A UREA transporter 1; mem 36.0 89 0.003 25.6 6.4 62 3-64 42-105 (384)
3 2lbg_A Major prion protein; co 31.5 51 0.0017 16.1 2.7 20 49-68 6-25 (27)
4 2hfr_A Fowlicidin-3, cathelici 20.5 48 0.0016 15.9 1.3 18 102-119 2-19 (27)
5 3j27_B Matrix protein, small e 19.5 76 0.0026 19.6 2.4 20 81-100 27-46 (75)
6 1p58_D Envelope protein M; fla 19.2 78 0.0027 19.6 2.4 22 80-101 26-47 (75)
7 3k3f_A UREA transporter; membr 13.4 5E+02 0.017 20.6 7.4 62 3-65 7-70 (340)
8 3o5v_A X-Pro dipeptidase; crea 12.1 60 0.0021 21.5 0.6 37 81-123 3-39 (132)
9 4a01_A Proton pyrophosphatase; 11.1 6.5E+02 0.022 22.6 6.8 64 80-147 624-689 (766)
10 2l9u_A Receptor tyrosine-prote 11.0 2.1E+02 0.0072 14.9 3.9 15 54-68 21-35 (40)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=57.86 E-value=40 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 030278 31 SVLTLGGGYLFGLPVGFVADSIGATIGAGA 60 (180)
Q Consensus 31 ~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~ 60 (180)
+....+++..+|++.|.+...+...+++..
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999998888887765
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=36.03 E-value=89 Score=25.62 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=35.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcccCc--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030278 3 RCFDLVRFSMVICRAVAYIPLTILAVP--ASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLL 64 (180)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~P--~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~i 64 (180)
+|++|+|.....+=..+--..++.+.+ -+-+.++.|..++-+...+.+.+|+.+|....+.+
T Consensus 42 ~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~ll 105 (384)
T 4ezc_A 42 NWLKDKPQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLL 105 (384)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 466777765544444444445555554 45577777777765555566666666655555433
No 3
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=31.48 E-value=51 Score=16.13 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030278 49 ADSIGATIGAGAAFLLGRTI 68 (180)
Q Consensus 49 ~~~~g~~lg~~~~y~igr~~ 68 (180)
....|.++|..-.|.+|+..
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 34678888989899888753
No 4
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=20.49 E-value=48 Score=15.88 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=12.2
Q ss_pred hhcCCCChhHHHHHhhcc
Q 030278 102 RLVPLLPFNMLNYLLSVT 119 (180)
Q Consensus 102 r~~P~~p~~~~~~~aG~~ 119 (180)
||.|-.|..+...++|.-
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 678888887555666643
No 5
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=19.49 E-value=76 Score=19.61 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHccchhhhHH
Q 030278 81 PQFRSVALAIQRSGFKIVLL 100 (180)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~l 100 (180)
+++.|.|++.=||+.+++..
T Consensus 27 ~~l~rvE~WilrNp~~al~~ 46 (75)
T 3j27_B 27 KHAQRIETWILRHPGFTIMA 46 (75)
T ss_dssp HHHHHHHHHHHHCCTHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHH
Confidence 57889999998888776654
No 6
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=19.16 E-value=78 Score=19.58 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHccchhhhHHH
Q 030278 80 YPQFRSVALAIQRSGFKIVLLL 101 (180)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~l~ 101 (180)
++++.|.|++.=||+.+++...
T Consensus 26 ~~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 26 WKHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHHChHHHHHHH
Confidence 3578999999999988777653
No 7
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=13.41 E-value=5e+02 Score=20.65 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=32.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcccCc--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 030278 3 RCFDLVRFSMVICRAVAYIPLTILAVP--ASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLG 65 (180)
Q Consensus 3 ~~~~~~~~~~~~~f~~~~~~~~~~~~P--~~~~~~~~G~~~g~~~~~l~~~~g~~lg~~~~y~ig 65 (180)
+++++++..-.+- ..+--..++.+.+ -+-+.++.|...+-+...+.+.+|+.+|......++
T Consensus 7 ~~~~~~~~~~~i~-~~LrG~~QV~f~~n~lsGllil~gi~~~s~~~a~~allG~~~stltA~llg 70 (340)
T 3k3f_A 7 EQLLKNPLIEFCD-SVCRGCGQVMFQNNTVTGLLFFAGIFYNSTTLGVCAVLGTAASTLTAQLLG 70 (340)
T ss_dssp GGGGCCHHHHHHH-HHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCccHHHHH-HHhcCeeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677764332222 2222334444444 455777777777755555556666666555544433
No 8
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=12.08 E-value=60 Score=21.46 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCCh
Q 030278 81 PQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPL 123 (180)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~ 123 (180)
++++++++.++++|.-.+++. -|.+ +.|+.|.++-+.
T Consensus 3 ~Rl~~l~~~m~~~glDa~li~-----~~~n-i~YltGf~~~~~ 39 (132)
T 3o5v_A 3 AKLDQIRLYLDQKGAELAIFS-----DPVT-INYLTGFFCDPH 39 (132)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC-----CHHH-HHHHHSCCCCCT
T ss_pred HHHHHHHHHHHHCCCCEEEEc-----Ccch-hhHhhCCCCCCc
Confidence 577888888998887766552 2666 889998876553
No 9
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=11.10 E-value=6.5e+02 Score=22.58 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhcc-C-CChhhHHHHHHHhhHHHHHHHHHHHhh
Q 030278 80 YPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVT-P-VPLLEYMLASWIGMMPITLALVYVGTT 147 (180)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~-~-~~~~~f~~~~~ig~~~~~~~~~~~G~~ 147 (180)
+|.++|.-+...|...+-+..--+++ .+.|.+.|.. + --.--++....++.+...+...-.|..
T Consensus 624 kPDY~rcV~I~T~aAlkeMi~Pglla----v~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai~maNaGGA 689 (766)
T 4a01_A 624 KPDYATCVKISTDASIKEMIPPGALV----MLTPLVVGILFGVETLSGVLAGSLVSGVQIAISASNTGGA 689 (766)
T ss_dssp CCCHHHHHHHHHHHHHHHTHHHHHHH----HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45566666666655544444333322 2233343321 2 123456666666666666666666643
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.97 E-value=2.1e+02 Score=14.86 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHh
Q 030278 54 ATIGAGAAFLLGRTI 68 (180)
Q Consensus 54 ~~lg~~~~y~igr~~ 68 (180)
.++|+...||=||+-
T Consensus 21 ~~lg~tflywrgrrh 35 (40)
T 2l9u_A 21 MMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhCceeEEEccccc
Confidence 467888999988863
Done!