Query 030278
Match_columns 180
No_of_seqs 110 out of 1025
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 18:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 13.7 1.1E+02 0.0082 17.1 5.4 18 115-132 59-76 (86)
2 d1kp0a1 c.55.2.1 (A:1-156) Cre 12.6 29 0.0021 22.0 0.8 38 81-124 26-63 (156)
3 d1bl0a1 a.4.1.8 (A:9-62) MarA 10.5 1.1E+02 0.0083 15.3 3.9 47 82-128 4-53 (54)
4 d2q7ra1 f.56.1.1 (A:1-139) Ara 10.1 2E+02 0.015 17.9 5.2 37 54-90 16-57 (139)
5 d2uuia1 f.56.1.1 (A:2-147) Leu 8.6 2.4E+02 0.018 17.7 5.3 37 55-91 12-53 (146)
6 d2osoa1 d.278.1.3 (A:5-156) Hy 8.3 42 0.0031 21.8 0.3 35 57-97 44-78 (152)
7 d1t33a2 a.121.1.1 (A:89-220) P 7.2 2E+02 0.014 17.8 3.4 40 50-93 79-122 (132)
8 d1mo6a2 d.48.1.1 (A:270-329) R 7.1 1.4E+02 0.01 16.0 2.2 23 69-91 33-56 (60)
9 d1u94a2 d.48.1.1 (A:269-328) R 7.0 1.5E+02 0.011 15.8 2.4 23 69-91 33-56 (60)
10 d1chma1 c.55.2.1 (A:2-156) Cre 6.9 83 0.006 19.6 1.3 38 80-123 24-61 (155)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=1.1e+02 Score=17.09 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=9.6
Q ss_pred HhhccCCChhhHHHHHHH
Q 030278 115 LLSVTPVPLLEYMLASWI 132 (180)
Q Consensus 115 ~aG~~~~~~~~f~~~~~i 132 (180)
.....+++...++...-+
T Consensus 59 ~L~~~Gi~~t~l~a~~G~ 76 (86)
T d2vv5a3 59 ALGRVGVQTASVIAVLGA 76 (86)
T ss_dssp HHHTTTCCSTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 334556666665554443
No 2
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=12.64 E-value=29 Score=22.04 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCChh
Q 030278 81 PQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLL 124 (180)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~ 124 (180)
++.+|+++.++++|.-.+++ . -|.+ +.|+.|....+..
T Consensus 26 ~R~~klr~~M~e~~iDalli---t--~~~n-i~YlTGf~~~~~~ 63 (156)
T d1kp0a1 26 RRZBRLRAWMAKSBIDAVLF---T--SYHN-INYYSGWLYCYFG 63 (156)
T ss_dssp HHHHHHHHHHHHHTCSEEEE---C--SHHH-HHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHHCCCCEEEE---c--Cccc-CeeecCCCcCccc
Confidence 47788899999999887766 2 3677 8999997766543
No 3
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=10.54 E-value=1.1e+02 Score=15.29 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcc---chhhhHHHhhcCCCChhHHHHHhhccCCChhhHHH
Q 030278 82 QFRSVALAIQRS---GFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYML 128 (180)
Q Consensus 82 ~~~~~~~~~~~~---g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~~~f~~ 128 (180)
.++++.+++++| +...==+++.+..-|..+.-..--.+++++.+|+-
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl~ 53 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIR 53 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHhh
Confidence 456666666654 22223366666666666666666777777777753
No 4
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.08 E-value=2e+02 Score=17.94 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHhhc-----CchHHHHHHHHH
Q 030278 54 ATIGAGAAFLLGRTIGKPFVISKLK-----DYPQFRSVALAI 90 (180)
Q Consensus 54 ~~lg~~~~y~igr~~~~~~~~~~~~-----~~~~~~~~~~~~ 90 (180)
+.++.....+++.+.++.+.+.+.+ .+|.++|..+..
T Consensus 16 t~l~~~~~~~ls~~Vg~aR~k~~v~~p~~~g~~~f~ra~RaH 57 (139)
T d2q7ra1 16 TLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTAN 57 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 3455555666777777654443332 245566655544
No 5
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=2.4e+02 Score=17.69 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHhhc-----CchHHHHHHHHHH
Q 030278 55 TIGAGAAFLLGRTIGKPFVISKLK-----DYPQFRSVALAIQ 91 (180)
Q Consensus 55 ~lg~~~~y~igr~~~~~~~~~~~~-----~~~~~~~~~~~~~ 91 (180)
.+......+.+.+.++...+.+.+ .+|.++|.++..+
T Consensus 12 ~l~~i~~~~~s~~V~~~R~k~kv~~p~~~g~~~fera~RaH~ 53 (146)
T d2uuia1 12 LLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQV 53 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 444455666666776654333332 2456666655433
No 6
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=8.33 E-value=42 Score=21.77 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHccchhh
Q 030278 57 GAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKI 97 (180)
Q Consensus 57 g~~~~y~igr~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (180)
.+.+-|+.||.+||+.-. +..+.+.+..+++|+..
T Consensus 44 ~~~iLY~aGk~lGr~~~~------k~~eel~~ff~~~g~G~ 78 (152)
T d2osoa1 44 SETSLYEIGEEFGKMLSP------KNIEELKKIFKLMNFGD 78 (152)
T ss_dssp CCCCHHHHHHHHHHHHCC------SSHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCce
Confidence 456789999998875322 23556666777766543
No 7
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=7.20 E-value=2e+02 Score=17.82 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhhcC----chHHHHHHHHHHcc
Q 030278 50 DSIGATIGAGAAFLLGRTIGKPFVISKLKD----YPQFRSVALAIQRS 93 (180)
Q Consensus 50 ~~~g~~lg~~~~y~igr~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 93 (180)
.+.=+++|..+.|.++|.. +.+.++. .+..+++++.+.++
T Consensus 79 ~~~~sivGq~l~f~var~~----~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 79 LHTHALLGEVLAFRLGKET----ILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHHHHHTHHH----HHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 3444567778888776654 4444432 34566666666655
No 8
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.07 E-value=1.4e+02 Score=16.04 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=13.4
Q ss_pred ChHHHHHhhcCchHH-HHHHHHHH
Q 030278 69 GKPFVISKLKDYPQF-RSVALAIQ 91 (180)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~ 91 (180)
||+..+.+++++|.+ +.++..++
T Consensus 33 Gre~a~~~L~enpel~~eie~~ir 56 (60)
T d1mo6a2 33 GKENARNFLVENADVADEIEKKIK 56 (60)
T ss_dssp SHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHH
Confidence 556666677666544 55555554
No 9
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.03 E-value=1.5e+02 Score=15.83 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=12.6
Q ss_pred ChHHHHHhhcCchHH-HHHHHHHH
Q 030278 69 GKPFVISKLKDYPQF-RSVALAIQ 91 (180)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~ 91 (180)
||+..+.+++++|.+ +.++..++
T Consensus 33 Gre~~~~~L~enpel~~eie~~ir 56 (60)
T d1u94a2 33 GKANATAWLKDNPETAKEIEKKVR 56 (60)
T ss_dssp SHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCHHHHHHHHHHHH
Confidence 456566666655543 44555444
No 10
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=6.89 E-value=83 Score=19.63 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHccchhhhHHHhhcCCCChhHHHHHhhccCCCh
Q 030278 80 YPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPL 123 (180)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~l~r~~P~~p~~~~~~~aG~~~~~~ 123 (180)
+++++|+++.++++|.-.+++ .-|.+ +.|+.|...-++
T Consensus 24 ~~Rl~klr~~m~~~giDalli-----~~~~n-i~YlTGf~~~~~ 61 (155)
T d1chma1 24 ANRQARLRAHLAAENIDAAIF-----TSYHN-INYYSDFLYCSF 61 (155)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE-----CSHHH-HHHHHSCCCCCT
T ss_pred HHHHHHHHHHHHHcCCCEEEE-----ecccc-ceeecCccccCc
Done!