BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030279
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JU0|A Chain A, Structure Of The Arm-type Binding Domain Of Hai7
          Integrase
          Length = 108

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)

Query: 32 SLVENDVENYKSLEFD---AGGYKWKLVVYPNGNK 63
          SL ++ V+N KSLE +     G+   L+V+PNG+K
Sbjct: 2  SLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSK 36


>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
           Leaves (Populus X Canescens)
 pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
           Leaves (Populus X Canescens)
 pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
           Leaves (Populus X Canescens) In Complex With Three Mg2+
           Ions And Dimethylallyl-S-Thiolodiphosphate
 pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
           Leaves (Populus X Canescens) In Complex With Three Mg2+
           Ions And Dimethylallyl-S-Thiolodiphosphate
          Length = 555

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 60  NGNKNENVKDHISIYLAMVDTSSLGL-GWEVYVIFRLFVLDQKKDEFLILQEVFVKETKK 118
           NGN  EN+K+     L++ + S L L G  +    R+F +   K+   + +E   KE  +
Sbjct: 137 NGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE---LSEEKIGKELAE 193

Query: 119 CTGECLSMKKLTSASNYKHVWKIKNFSKLPD 149
                L +         + VW I+ + K  D
Sbjct: 194 QVNHALELPLHRRTQRLEAVWSIEAYRKKED 224


>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 7
 pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
 pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
           Compound 12
          Length = 298

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 3   NDFVDQVAISRSISHVPPAH---FLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVV-- 57
            D   +V   + + H    H   F  +IE   SL  +++  YK + + AG    KL++  
Sbjct: 38  QDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEF 97

Query: 58  YPNGNKNENVKDH 70
            P G+  E ++ H
Sbjct: 98  LPYGSLREYLQKH 110


>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
 pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
          Length = 298

 Score = 26.2 bits (56), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 16/124 (12%)

Query: 3   NDFVDQVAISRSISHVPPAH---FLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVV-- 57
            D   +V   + + H    H   F  +IE   SL  +++  YK + + AG    KL++  
Sbjct: 38  QDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEY 97

Query: 58  YPNGNKNENVKDHISIYLAMVD-------TSSLGLGWEVYVIFRLFVLDQKKDEFLILQE 110
            P G    +++D++  +   +D       TS +  G E     R    D      L+  E
Sbjct: 98  LPYG----SLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENE 153

Query: 111 VFVK 114
             VK
Sbjct: 154 NRVK 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,524,461
Number of Sequences: 62578
Number of extensions: 213776
Number of successful extensions: 547
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 25
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)