BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030279
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 9 VAISRSISHVPPA-HFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENV 67
A+ PP+ F I F+ L N ++Y + F GGYKW+++++P GN NV
Sbjct: 41 TAVENPPPEDPPSLKFTWTIPMFTRL--NTRKHYSDV-FVVGGYKWRILIFPKGN---NV 94
Query: 68 KDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQKKDEFLILQEV 111
DH+S+YL + D ++L GW Y F L V++Q + + I +E
Sbjct: 95 -DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET 137
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 19 PPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMV 78
P F I FS +N ++Y + F GGYKW+++++P GN NV DH+S+YL +
Sbjct: 53 PTLKFTWTIPNFSR--QNTRKHYSDV-FVVGGYKWRILIFPKGN---NV-DHLSMYLDVS 105
Query: 79 DTSSLGLGWEVYVIFRLFVLDQKKDEFLILQEV 111
D +SL GW Y F L V++Q + + +E
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET 138
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis
thaliana GN=BPM5 PE=1 SV=1
Length = 410
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQ 100
F GGY+W + YP+G E+ ++S+++A+ G EV +F L ++DQ
Sbjct: 55 FSVGGYQWGIFFYPDGKNPEDNSSYVSVFIALASE-----GTEVRALFELALVDQ 104
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis
thaliana GN=BPM6 PE=1 SV=1
Length = 415
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 4 DFVDQVAISRSISHVPPAHFLLKIEAFSSLVENDVENY-KSLEFDAGGYKWKLVVYPNGN 62
D ++ SRS++ I+ +S V + S F GGY+W + VYP+G
Sbjct: 19 DQIESPTSSRSVTQTTNGSHQFVIQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVYPDGK 78
Query: 63 KNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQ 100
E+ ++S+++ + + EV +F L ++DQ
Sbjct: 79 NPEDNSSYVSVFIVLASECT-----EVRALFELSLVDQ 111
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis
thaliana GN=BPM4 PE=1 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQ 100
F GGY+W + YP+G E+ ++S+++A+ G +V +F L +LDQ
Sbjct: 73 FTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASD-----GTDVRALFELSLLDQ 122
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 27 IEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLG 86
IE FS + + ++ + F+ GGYKW +++YP G +V +H+S++L + L G
Sbjct: 75 IEKFSDINKREL---RGDVFEVGGYKWYILIYPQGC---DVCNHLSLFLCVAHHEKLLPG 128
Query: 87 WEVYVIFRLFVLDQ 100
W + F + V ++
Sbjct: 129 WSHFAQFTIAVSNK 142
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis
thaliana GN=BPM2 PE=1 SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 26 KIEAFSSLVENDVENY-KSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLG 84
KI +S + + Y S F GGY W + YP+G E+ ++S+++A+
Sbjct: 38 KISGYSLVKGMGIGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSVYVSLFIALASE---- 93
Query: 85 LGWEVYVIFRLFVLDQKKDE 104
G +V +F L ++DQ +E
Sbjct: 94 -GADVRALFELTLVDQSGNE 112
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis
thaliana GN=BPM3 PE=1 SV=1
Length = 408
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQ 100
F GGY W + YP+G E+ +IS+++A+ S+ ++ +F L ++DQ
Sbjct: 51 FSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSN-----DIRALFELTLMDQ 100
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis
thaliana GN=BPM1 PE=1 SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQKKD 103
F GGY W + YP+G E+ ++S+++A+ G +V +F L ++DQ +
Sbjct: 60 FMVGGYSWAIYFYPDGKSPEDNSSYVSLFIALASE-----GADVRALFELTLVDQSGN 112
>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340
OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2
Length = 449
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 42 KSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVLDQK 101
+S EF G K+K+ YPNG ++ KD +SIYL D + +V F L D
Sbjct: 335 ESPEFMVGNLKFKIQFYPNGGLSDESKDFLSIYLYKFDDQTPS---KVQFSFELLNKDFT 391
Query: 102 KDEFLILQEVFVKETK 117
++ L +F E K
Sbjct: 392 RNRKLASTNIFHTENK 407
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans
GN=bath-42 PE=1 SV=1
Length = 410
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 26 KIEAFSSLVE--NDVENYKSLEF---DAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDT 80
KIE F L++ + N S F DA W+L VYPNG ++E+V +++S +L V
Sbjct: 51 KIEQFEKLMKLIKNGSNLISRMFSVPDAPTVCWELHVYPNGKRDEDV-NNVSFFLRQV-- 107
Query: 81 SSLGLGWE-VYVIFRLFVLD 99
L G E + F+++ LD
Sbjct: 108 -GLARGEEPIMTEFQIYALD 126
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 129 LTSASNYKHVWKIKNFSKLPDNIYESEVFVAGDQKWY-VYFLKWCS 173
L A++ + W +KNFS L D Y S +F AG W V F K C+
Sbjct: 46 LEEAAHASYSWVVKNFSTLEDKTY-SPLFKAGHTTWRIVLFPKGCN 90
>sp|Q54FB9|Y0971_DICDI TNF receptor-associated factor family protein DDB_G0290971
OS=Dictyostelium discoideum GN=DDB_G0290971 PE=3 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 39 ENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFVL 98
E ++ D G K+KL +YPNG +E+ K +IS YL V + + +V F
Sbjct: 332 EGISTVPLDVGNNKFKLTLYPNG-YDESNKGNISAYLYRVSINEPAV--KVSFTFVFNNQ 388
Query: 99 DQKKDEFLILQE 110
D +K+ +QE
Sbjct: 389 DSRKNRTYRIQE 400
>sp|Q4ZQI1|ASTE_PSEU2 Succinylglutamate desuccinylase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=astE PE=3 SV=1
Length = 335
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 26 KIEAFSSLVENDVENYKSLE------FDAGGYKWKL------VVYPNGNKNENVKDHISI 73
+ +AF+ + +DVEN+ LE DAGG +W + +++PN ++ I
Sbjct: 267 RTDAFTFNLADDVENFSPLEKGYVLAEDAGGSRWVVEEEGARIIFPNPRVKNGLR--AGI 324
Query: 74 YLAMVDTSSLG 84
+ D SLG
Sbjct: 325 LIVPTDADSLG 335
>sp|Q6CKK7|ACOX_KLULA Acyl-coenzyme A oxidase OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=POX1 PE=3 SV=1
Length = 736
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 79 DTSSLGLGWEVYVIFRLFVLDQKKDEFLILQEV 111
D + G W++Y +F L+ +DQ EFL+L+ V
Sbjct: 600 DAYTKGYLWKLYELFSLYFIDQHLGEFLLLKVV 632
>sp|B8F3V1|QUEF_HAEPS NADPH-dependent 7-cyano-7-deazaguanine reductase OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=queF PE=3 SV=1
Length = 279
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 122 ECLSMKKLTSASNYKHVWKIKNFSKLPD-------NIYESEVFVAGDQKWYVYFLKW 171
ECLSM KL + YK + +P I + + F G W +Y L W
Sbjct: 6 ECLSMLKLGKKTEYKSTYDPSLLQAVPRYLNRESLGIVKQQPFTVGADIWTLYELSW 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,839,552
Number of Sequences: 539616
Number of extensions: 2654147
Number of successful extensions: 5761
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5735
Number of HSP's gapped (non-prelim): 43
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)