Query 030279
Match_columns 180
No_of_seqs 191 out of 1128
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 99.9 6.6E-25 2.3E-29 163.9 9.4 126 14-161 4-132 (145)
2 2foj_A Ubiquitin carboxyl-term 99.9 1.7E-23 5.8E-28 157.7 10.4 123 18-162 16-138 (155)
3 1lb6_A TNF receptor-associated 99.9 2.9E-23 9.8E-28 157.4 9.4 134 18-162 2-146 (160)
4 4gjh_A TNF receptor-associated 99.9 1E-23 3.5E-28 162.9 5.4 135 17-162 20-163 (178)
5 1ca9_A TRAF2, protein (TNF rec 99.9 6.7E-23 2.3E-27 159.9 7.4 132 18-162 40-180 (192)
6 4ghu_A TNF receptor-associated 99.9 4.2E-23 1.4E-27 162.2 5.7 137 18-167 37-181 (198)
7 1d00_A Tumor necrosis factor r 99.9 2.5E-22 8.6E-27 153.2 8.2 133 18-162 16-156 (168)
8 2gkw_A TNF receptor-associated 99.9 7.1E-23 2.4E-27 160.0 4.6 131 19-162 38-177 (192)
9 1flk_A TNF receptor associated 99.8 2.8E-22 9.6E-27 160.6 4.3 132 18-162 73-213 (228)
10 2f1z_A Ubiquitin carboxyl-term 99.8 3.7E-21 1.3E-25 170.0 9.2 129 17-168 27-155 (522)
11 3hqi_A Speckle-type POZ protei 99.8 5.3E-21 1.8E-25 158.5 8.8 123 18-162 4-129 (312)
12 3ivv_A Speckle-type POZ protei 98.7 1E-08 3.5E-13 75.6 4.4 44 132-175 8-57 (145)
13 2foj_A Ubiquitin carboxyl-term 98.7 1.2E-08 4E-13 76.1 4.2 42 133-175 17-58 (155)
14 4gwm_A Meprin A subunit beta; 98.6 9.6E-08 3.3E-12 85.5 9.3 142 15-165 400-559 (592)
15 4gjh_A TNF receptor-associated 98.6 6.5E-09 2.2E-13 79.6 1.2 45 132-176 21-74 (178)
16 4ghu_A TNF receptor-associated 98.6 8.4E-09 2.9E-13 80.5 1.7 45 132-176 37-90 (198)
17 1ca9_A TRAF2, protein (TNF rec 98.6 8.6E-09 3E-13 79.7 0.9 45 132-176 40-93 (192)
18 2gkw_A TNF receptor-associated 98.5 1.5E-08 5E-13 78.6 1.0 44 133-176 38-90 (192)
19 2f1z_A Ubiquitin carboxyl-term 98.5 1.1E-07 3.7E-12 83.8 5.0 41 133-174 29-69 (522)
20 1d00_A Tumor necrosis factor r 98.4 3E-08 1E-12 74.8 0.7 44 132-175 16-68 (168)
21 1flk_A TNF receptor associated 98.4 2.7E-08 9.4E-13 79.1 0.5 44 133-176 74-126 (228)
22 1lb6_A TNF receptor-associated 97.2 0.00022 7.7E-09 52.9 3.2 26 151-176 28-55 (160)
23 4gwm_A Meprin A subunit beta; 93.8 2.9 9.8E-05 37.3 15.6 137 20-173 286-448 (592)
24 3v0r_A Major allergen ALT A 1; 54.5 2.8 9.6E-05 30.0 0.1 32 17-49 8-39 (133)
25 1jya_A YOPE regulator; specifi 44.5 28 0.00095 24.7 4.0 34 37-80 22-55 (130)
26 2d9r_A Conserved hypothetical 35.3 32 0.0011 23.3 3.1 16 47-62 59-74 (104)
27 2k8e_A UPF0339 protein YEGP; p 21.6 42 0.0015 23.7 1.8 31 21-57 2-37 (130)
28 2kd2_A FAS apoptotic inhibitor 21.5 1.3E+02 0.0043 20.1 4.0 20 44-63 55-74 (94)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.92 E-value=6.6e-25 Score=163.86 Aligned_cols=126 Identities=26% Similarity=0.363 Sum_probs=100.6
Q ss_pred EEecCCCcEEEEEEcCccccccCCCCeEEccceeecCe---EEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCCCCcEEE
Q 030279 14 SISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVY 90 (180)
Q Consensus 14 ~~~~~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~vgG~---~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~~~~ 90 (180)
.+.+...++|+|+|+|||.+++..++.++|++|.+||| +|+|.+||+|+.. +..+||||||++.+. ++|+++
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~----~~w~v~ 78 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVR 78 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSG-GGTTEEEEEEEEEEC----SSSEEE
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCC-CCCCeEEEEEEEcCC----CCCcEE
Confidence 45677889999999999999755578999999999996 9999999999874 457899999999875 359999
Q ss_pred EEEEEEEEeCCCCceeEEeeEEeccccccccceEeceecccCCCcceEEEeccccCCCCCccCCCcEEeCC
Q 030279 91 VIFRLFVLDQKKDEFLILQEVFVKETKKCTGECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEVFVAGD 161 (180)
Q Consensus 91 a~f~~~llnq~~~~~~~~~dvF~~~~~~~~~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~F~vg~ 161 (180)
|+|+|.|+||.++++.... ......|. ....||+.+|+.++++...+.+|+++|
T Consensus 79 a~f~l~llnq~~~~~~~~~----------~~~~~~F~-------~~~~wG~~~Fi~~~~L~~~~~~yl~dD 132 (145)
T 3ivv_A 79 AKFKFSILNAKGEETKAME----------SQRAYRFV-------QGKDWGFKKFIRRDFLLDEANGLLPDD 132 (145)
T ss_dssp EEEEEEEECTTSCEEEEEE----------CSSCEEEE-------TTCEEEEEEEEEHHHHHCGGGCSSGGG
T ss_pred EEEEEEEEecCCCceeeec----------ccceEEec-------CCCCcCHHHeEEhhhhccccCCcEeCC
Confidence 9999999999988765421 11111121 246899999999987755667899988
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.90 E-value=1.7e-23 Score=157.72 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=93.7
Q ss_pred CCCcEEEEEEcCccccccCCCCeEEccceeecCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCCCCcEEEEEEEEEE
Q 030279 18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLFV 97 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~vgG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~~~~a~f~~~l 97 (180)
.+.++|+|+|+|||.++ +.++|++|.+|||+|||.+||+|+..++..+||||||++... ..+.+|.++|+|+|.|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 45799999999999994 789999999999999999999998631257899999998544 4567899999999999
Q ss_pred EeCCCCceeEEeeEEeccccccccceEeceecccCCCcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 98 LDQKKDEFLILQEVFVKETKKCTGECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 98 lnq~~~~~~~~~dvF~~~~~~~~~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
+||.+++.+..+. . .. .|......||+.+|+.++++...+.+|+++|+
T Consensus 91 ~~~~~~~~~~~~~----------~-~~------~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~ 138 (155)
T 2foj_A 91 INYRDDEKSFSRR----------I-SH------LFFHKENDWGFSNFMAWSEVTDPEKGFIDDDK 138 (155)
T ss_dssp CCSSCGGGCEEEE----------E-EE------EEETTBCEEEEEEEEEHHHHTCTTTSSCBTTB
T ss_pred EcCCCCcceEEec----------c-EE------EeCCCCCCEeECCeEEHHHhcCcCCCceECCE
Confidence 9999876333210 0 11 12223558999999999877666788999984
No 3
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.89 E-value=2.9e-23 Score=157.41 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=96.5
Q ss_pred CCCcEEEEEEcCcccccc--CCCC--eEEccceeec--CeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCC-CCCcEEE
Q 030279 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSL-GLGWEVY 90 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~--~~~~--~~~S~~F~vg--G~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~-~~~~~~~ 90 (180)
...|+|+|+|+|||.+++ +.++ .++|++|.+| ||+|+|++||+|+..+...+||||||++++.+.. +.+|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 457899999999999875 2466 8999999999 9999999999998642237899999999876542 4579999
Q ss_pred EEEEEEEEeCCCCcee-EEeeEE-eccccccccceEeceecccCCC--cceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 91 VIFRLFVLDQKKDEFL-ILQEVF-VKETKKCTGECLSMKKLTSASN--YKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 91 a~f~~~llnq~~~~~~-~~~dvF-~~~~~~~~~e~~s~~~~~~~~~--~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
|+|+|+|+||.+.... ...+.| .++. ...+. .+.. ..-.||+..|+.+.++. +.+|+++|+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~------~~~f~---~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~ 146 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPE------LLAFQ---RPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDT 146 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTT------SGGGS---CCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTB
T ss_pred eeEEEEEEcCCCccccccceEEeecCCc------chhcc---CCcccCCCCCcCEeeEeEHHHhh--hCCCccCCE
Confidence 9999999999875311 111122 1111 00011 1211 23479999999999763 578999884
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.88 E-value=1e-23 Score=162.91 Aligned_cols=135 Identities=17% Similarity=0.256 Sum_probs=99.8
Q ss_pred cCCCcEEEEEEcCcccccc---C-CCCeEEccceeec--CeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCC-CCCCcEE
Q 030279 17 HVPPAHFLLKIEAFSSLVE---N-DVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISIYLAMVDTSS-LGLGWEV 89 (180)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~---~-~~~~~~S~~F~vg--G~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~-~~~~~~~ 89 (180)
....|+|+|+|+|||.+++ . .+..++|++|.+| ||+|+|.+||+|+.. +..+||||||++++.+. ...+|++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCC-CCCCEEEEEEEEecCCCCcccCCce
Confidence 4678999999999999875 1 2348999999999 999999999999874 35689999999976542 2357999
Q ss_pred EEEEEEEEEeCCCCceeEEeeEE-eccccccccceEeceecccCC-CcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 90 YVIFRLFVLDQKKDEFLILQEVF-VKETKKCTGECLSMKKLTSAS-NYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 90 ~a~f~~~llnq~~~~~~~~~dvF-~~~~~~~~~e~~s~~~~~~~~-~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
+|+|+|.|+||.++.....+ .| .++. ...|. .+. .....||+..|+.+.++..++.+|+++|+
T Consensus 99 ~a~~~l~Lldq~~~~~~~~~-~~~~~~~------~~~F~---~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~ 163 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKNHIVE-TFKADPN------SSSFK---RPDGEMNIASGCPRFVSHSTLENSKNTYIKDDT 163 (178)
T ss_dssp CCEEEEEECCTTSSCCCEEE-EEECCTT------CGGGS---CCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTB
T ss_pred EEEEEEEEEcCCCCcceeEE-eeccCCc------ccccc---CCcccccCCcChhheeEHHHhhccccCcCcCCE
Confidence 99999999999987544321 11 0100 00111 111 23457999999999877555678999983
No 5
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.87 E-value=6.7e-23 Score=159.92 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=98.7
Q ss_pred CCCcEEEEEEcCcccccc--CCCC--eEEccceee--cCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCC-CCcEEE
Q 030279 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLG-LGWEVY 90 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~--~~~~--~~~S~~F~v--gG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~-~~~~~~ 90 (180)
...++|+|+|+|||.+++ +.|+ .++|++|.+ |||+|+|.+||+|+.. +..+||||||++++....+ .+|+++
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCCCcCCCceE
Confidence 578999999999999874 2444 699999999 9999999999999874 3578999999998876544 679999
Q ss_pred EEEEEEEEeCCCCceeEEeeEE-eccccccccceEeceecccCC-CcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 91 VIFRLFVLDQKKDEFLILQEVF-VKETKKCTGECLSMKKLTSAS-NYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 91 a~f~~~llnq~~~~~~~~~dvF-~~~~~~~~~e~~s~~~~~~~~-~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
|+|+|.|+||.+.++... .+ .++ ....+. .|. .....||+..|+.+.++.. +.+|+++|+
T Consensus 119 a~~~l~lldq~~~~~~~~--~~~~~~------~~~~f~---rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~ 180 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVID--AFRPDV------TSSSFQ---RPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDA 180 (192)
T ss_dssp CCEEEEECCTTSSCCEEE--EECCCT------TSGGGS---CCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTE
T ss_pred EEEEEEEECCCCCceeeE--eeccCC------chhhhc---CCccCCCCCcChhheeEHHHhhh-ccCCEeCCE
Confidence 999999999998855321 01 000 000011 121 2345799999999987643 568999984
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.87 E-value=4.2e-23 Score=162.18 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=100.1
Q ss_pred CCCcEEEEEEcCcccccc----CCCCeEEccceeec--CeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCC-CCCCcEEE
Q 030279 18 VPPAHFLLKIEAFSSLVE----NDVENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISIYLAMVDTSS-LGLGWEVY 90 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~----~~~~~~~S~~F~vg--G~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~-~~~~~~~~ 90 (180)
...|+|+|+|+|||.+++ +.++.++|++|.+| ||+|+|.+||+|+.. +..+||||||.+++.+. ...+|+++
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCC-CCCCeEEEEEEecCCccCCCCCceEE
Confidence 567999999999999875 24689999999999 999999999999874 45789999999987643 23579999
Q ss_pred EEEEEEEEeCCCCceeEEeeEE-eccccccccceEeceecccCCCcceEEEeccccCCCCCccCCCcEEeCCeEEEEE
Q 030279 91 VIFRLFVLDQKKDEFLILQEVF-VKETKKCTGECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEVFVAGDQKWYVY 167 (180)
Q Consensus 91 a~f~~~llnq~~~~~~~~~dvF-~~~~~~~~~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~~w~i~ 167 (180)
|+|+|+|+||.+......+ .| .++. ...+.+ .+......||+..|+.+.++. +.+|+++| ...|.
T Consensus 116 a~~~l~Lldq~~~~~~~~~-~~~~~~~------~~~f~r--p~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD-~l~I~ 181 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGD-AFKPDPN------SSSFKK--PTGEMNIASGCPVFVAQTVLE--NGTYIKDD-TIFIK 181 (198)
T ss_dssp CCEEEEECCCSTTCCCEEE-EECCCTT------SGGGSC--CSSSBCCCEEEEEEEEHHHHH--HTTSCBTT-BEEEE
T ss_pred EEEEEEEEcCCCCccceEE-EeecCcc------cceecC--CcccCcCCcCchhEeEHHHhh--hcCCeeCC-EEEEE
Confidence 9999999999976544321 11 1110 000111 122334589999999988763 46799988 34333
No 7
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.87 E-value=2.5e-22 Score=153.15 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=97.2
Q ss_pred CCCcEEEEEEcCcccccc--CCCC--eEEcccee--ecCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCC-CCcEEE
Q 030279 18 VPPAHFLLKIEAFSSLVE--NDVE--NYKSLEFD--AGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLG-LGWEVY 90 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~--~~~~--~~~S~~F~--vgG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~-~~~~~~ 90 (180)
...++|+|+|+|||.+++ ..++ .++|++|. +|||+|+|.+||+|+.. +..+||||||++++.+..+ .+|+++
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCC-CCCcEEEEEEEEecCCCCccCCCceE
Confidence 468999999999999975 2455 49999995 89999999999999874 3568999999998865443 689999
Q ss_pred EEEEEEEEeCCCCceeEEeeEEeccccccccceEeceecccCC-CcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 91 VIFRLFVLDQKKDEFLILQEVFVKETKKCTGECLSMKKLTSAS-NYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 91 a~f~~~llnq~~~~~~~~~dvF~~~~~~~~~e~~s~~~~~~~~-~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
|+|+|.|+||.+.++.... + .+. .....+. .+. .....||+.+|+.+.++.. +.+|+++|+
T Consensus 95 ~~~~l~ll~q~~~~~~~~~--~-~~~----~~~~~f~---~p~~~~~~~~G~~~Fi~~~~L~~-~~gyl~dD~ 156 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVIDA--F-RPD----VTSSSFQ---RPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDA 156 (168)
T ss_dssp CCEEEEECCTTSSCCEEEE--E-CCC----TTSGGGS---CCSSSBCCCEEEEEEEETTTTTS-SSSSSBTTE
T ss_pred EEEEEEEECCCCCccceec--c-ccC----cchhhcc---CCCcCCCCCcCcceEeEHHHhcc-cCCceeCCE
Confidence 9999999999987644310 0 000 0000011 111 2345799999999998743 238999984
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.86 E-value=7.1e-23 Score=160.02 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=96.5
Q ss_pred CCcEEEEEEcCcccccc--CCCC--eEEccceeec--CeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCC-CCCcEEEE
Q 030279 19 PPAHFLLKIEAFSSLVE--NDVE--NYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSL-GLGWEVYV 91 (180)
Q Consensus 19 ~~~~~~w~I~~fS~l~~--~~~~--~~~S~~F~vg--G~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~-~~~~~~~a 91 (180)
..|+|+|+|+|||.+++ +.++ .++|++|.+| ||+|+|.+||+|+.. +..+||||||++++.+.. ..+|+++|
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCC-CCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 68999999999999974 2355 6999999999 999999999999874 457899999999876543 35799999
Q ss_pred EEEEEEEeCCCCceeEEeeEE-eccccccccceEeceecccC-CCcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 92 IFRLFVLDQKKDEFLILQEVF-VKETKKCTGECLSMKKLTSA-SNYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 92 ~f~~~llnq~~~~~~~~~dvF-~~~~~~~~~e~~s~~~~~~~-~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
+|+|+|+||.+++....+ .| ..+. ...|.+ + ......||+..|+.+.++. +.+|+++|+
T Consensus 117 ~~~l~lldq~~~~~~~~~-~~~~~~~------~~~F~~---~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~ 177 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGD-AFKPDPN------SSSFKK---PTGEMNIASGCPVFVAQTVLE--NGTYIKDDT 177 (192)
T ss_dssp CEEEEECCCSTTCCCEEE-EECCCTT------CTTSSC---CSSSBCCCEEEEEEEEHHHHH--HTTSCBTTE
T ss_pred EEEEEEECCCCCccceEE-EEecCCC------cccccC---CCCCCcCCCChHHEeEHHHhC--cCCCeeCCE
Confidence 999999999987554321 11 0000 000111 1 1123479999999998763 347999984
No 9
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.85 E-value=2.8e-22 Score=160.56 Aligned_cols=132 Identities=18% Similarity=0.203 Sum_probs=97.4
Q ss_pred CCCcEEEEEEcCcccccc--CCC--CeEEccceeec--CeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCC-CCCcEEE
Q 030279 18 VPPAHFLLKIEAFSSLVE--NDV--ENYKSLEFDAG--GYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSL-GLGWEVY 90 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~--~~~--~~~~S~~F~vg--G~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~-~~~~~~~ 90 (180)
...|+|+|+|+|||.+++ +.+ ..++|++|.+| ||+|+|.+||+|+.. +..+||||||++++.+.. ..+|++.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGG-GTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEecCCccccCCCcEE
Confidence 468999999999999874 233 48999999999 999999999999874 467899999999876543 4579999
Q ss_pred EEEEEEEEeCCCCceeEEeeEE-eccccccccceEeceecccC-CCcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 91 VIFRLFVLDQKKDEFLILQEVF-VKETKKCTGECLSMKKLTSA-SNYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 91 a~f~~~llnq~~~~~~~~~dvF-~~~~~~~~~e~~s~~~~~~~-~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
|+|+|+|+||.+++....+ .| .++. ...|. .+ ....-.||+..|..+.++. +.+|+++|+
T Consensus 152 a~~~l~lldq~~~~~~~~~-~~~~~~~------~~~F~---rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~ 213 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGD-AFKPDPN------SSSFK---KPTGEMNIASGCPVFVAQTVLE--NGTYIKDDT 213 (228)
T ss_dssp CCEEEEECCCSSSCCCEEE-EECCCTT------CTTSS---SCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSE
T ss_pred EEEEEEEEcCCCCccceee-eecCCCc------ccccc---CCccCCCCCcCHHHeeEHHHHc--cCCCccCCE
Confidence 9999999999988654321 11 0000 00011 11 1223479999999988653 467999884
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=170.00 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=96.2
Q ss_pred cCCCcEEEEEEcCccccccCCCCeEEccceeecCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCCCCcEEEEEEEEE
Q 030279 17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFRLF 96 (180)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~vgG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~~~~a~f~~~ 96 (180)
..+.++|+|+|+|||.++ +.++|++|.+|||+|||++||+|+..++..+||||||++.+. ..+.+|.++|+|+|.
T Consensus 27 ~~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~ 101 (522)
T 2f1z_A 27 WRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLK 101 (522)
T ss_dssp CCSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEE
T ss_pred ccCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEE
Confidence 356799999999999996 389999999999999999999997633357899999999877 457789999999999
Q ss_pred EEeCCCCceeEEeeEEeccccccccceEeceecccCCCcceEEEeccccCCCCCccCCCcEEeCCeEEEEEE
Q 030279 97 VLDQKKDEFLILQEVFVKETKKCTGECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEVFVAGDQKWYVYF 168 (180)
Q Consensus 97 llnq~~~~~~~~~dvF~~~~~~~~~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~~w~i~~ 168 (180)
|+||.+.+.+..+ .... .|......||+.+|+.+.++...+.+|+++|+ ..|.+
T Consensus 102 l~n~~~~~~~~~~-----------~~~~------~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~-l~i~~ 155 (522)
T 2f1z_A 102 IINYRDDEKSFSR-----------RISH------LFFHKENDWGFSNFMAWSEVTDPEKGFIDDDK-VTFEV 155 (522)
T ss_dssp ECCTTCGGGCEEE-----------ECCE------EECGGGCEEEESSSSBHHHHSCGGGSSCBTTB-EEEEE
T ss_pred EEcCCCCccceec-----------ccee------EecCCCCCcchhheeEhhHhcCcccCcccCCc-EEEEE
Confidence 9999986554321 1111 23334568999999998876556678988884 44444
No 11
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.83 E-value=5.3e-21 Score=158.52 Aligned_cols=123 Identities=27% Similarity=0.390 Sum_probs=92.9
Q ss_pred CCCcEEEEEEcCccccccCCCCeEEccceeecCe---EEEEEEeeCCCcCCCCCCcEEEEEEeecCCCCCCCcEEEEEEE
Q 030279 18 VPPAHFLLKIEAFSSLVENDVENYKSLEFDAGGY---KWKLVVYPNGNKNENVKDHISIYLAMVDTSSLGLGWEVYVIFR 94 (180)
Q Consensus 18 ~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~vgG~---~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~~~~~~~~~a~f~ 94 (180)
...++|+|+|.|||.++...++.+.|++|.+||| +|+|.+||+|+.. +..+|||+||++.+.. +|+++|+|+
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~-~~~~~lslyL~~~~~~----~~~v~a~~~ 78 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFK 78 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCc-cCCCcEEEEEEEcCCC----CCcEEEEEE
Confidence 3468999999999999755589999999999996 9999999999874 4678999999998654 589999999
Q ss_pred EEEEeCCCCceeEEeeEEeccccccccceEeceecccCCCcceEEEeccccCCCCCccCCCcEEeCCe
Q 030279 95 LFVLDQKKDEFLILQEVFVKETKKCTGECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEVFVAGDQ 162 (180)
Q Consensus 95 ~~llnq~~~~~~~~~dvF~~~~~~~~~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~ 162 (180)
|.|+||.+++....+ ......| .. ...||+.+|..++++...+.+|+++|+
T Consensus 79 ~~l~~~~~~~~~~~~----------~~~~~~F------~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~ 129 (312)
T 3hqi_A 79 FSILNAKGEETKAME----------SQRAYRF------VQ-GKDWGFKKFIRRGFLLDEANGLLPDDK 129 (312)
T ss_dssp EEEECTTSCEEEEEE----------CSSCEEE------CT-TCEEEEEEEEEHHHHTCGGGCCCGGGC
T ss_pred EEEEeCCCCcccccc----------cCCceeC------CC-CCCcCHHHhccHHHhhccccCeecCCE
Confidence 999999987765421 1111112 22 238999999998876555667888873
No 12
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=98.71 E-value=1e-08 Score=75.62 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=38.2
Q ss_pred CCCcceEEEeccccCCCC---CccCCCcEEeCCe---EEEEEEecCCCCC
Q 030279 132 ASNYKHVWKIKNFSKLPD---NIYESEVFVAGDQ---KWYVYFLKWCSNP 175 (180)
Q Consensus 132 ~~~~~~tW~i~nFs~l~~---~~~~S~~F~vg~~---~w~i~~yp~g~~~ 175 (180)
...+.|+|.|.||+.+++ ..+.|+.|.+||+ +|+|.+||+|++.
T Consensus 8 ~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~ 57 (145)
T 3ivv_A 8 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE 57 (145)
T ss_dssp CCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSG
T ss_pred EEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCC
Confidence 345789999999999873 5688999999995 9999999999865
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.68 E-value=1.2e-08 Score=76.08 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=35.5
Q ss_pred CCcceEEEeccccCCCCCccCCCcEEeCCeEEEEEEecCCCCC
Q 030279 133 SNYKHVWKIKNFSKLPDNIYESEVFVAGDQKWYVYFLKWCSNP 175 (180)
Q Consensus 133 ~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~~w~i~~yp~g~~~ 175 (180)
..+.|+|.|.||+.++ ..+.|+.|.+||++|||.+||+|++.
T Consensus 17 ~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~ 58 (155)
T 2foj_A 17 SEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPD 58 (155)
T ss_dssp SEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC---
T ss_pred CCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCC
Confidence 4568999999999996 56779999999999999999999754
No 14
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.63 E-value=9.6e-08 Score=85.50 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=93.2
Q ss_pred EecCCCcEEEEEEcCccccccCCCCeEEccceee-cCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCC-CCCCcEE-EE
Q 030279 15 ISHVPPAHFLLKIEAFSSLVENDVENYKSLEFDA-GGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSS-LGLGWEV-YV 91 (180)
Q Consensus 15 ~~~~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~v-gG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~-~~~~~~~-~a 91 (180)
+.+..+..+.|+|.||+++....+..++||+|.. .||+++|.+||+| ..|+|||++|+..+. .-+.|++ .-
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence 3566778899999999999864567999999975 5999999999864 458999999998653 2367999 47
Q ss_pred EEEEEEEeCCCCce--eEEeeEE-ecccc--------ccc----cceEeceecccCCCcceEEEeccccCCCCCccCCCc
Q 030279 92 IFRLFVLDQKKDEF--LILQEVF-VKETK--------KCT----GECLSMKKLTSASNYKHVWKIKNFSKLPDNIYESEV 156 (180)
Q Consensus 92 ~f~~~llnq~~~~~--~~~~dvF-~~~~~--------~~~----~e~~s~~~~~~~~~~~~tW~i~nFs~l~~~~~~S~~ 156 (180)
++++.|+||..+-. ...+..| ..+.. |.+ +...++.. .......-.||..+|+++..+ .+..
T Consensus 474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~-~~~~~r~~~~G~~~fish~~l--~~r~ 550 (592)
T 4gwm_A 474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSN-GTQFRRGGGYGTSAFITHERL--KSRD 550 (592)
T ss_dssp EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTT-CCEEEEEEEEEEEEEEEHHHH--TSTT
T ss_pred EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccC-CcceeecCCcCccccccHHHH--hhcC
Confidence 89999999974421 1122344 22210 000 00000100 000112356899999998754 3566
Q ss_pred EEeCCeEEE
Q 030279 157 FVAGDQKWY 165 (180)
Q Consensus 157 F~vg~~~w~ 165 (180)
|+.+|.---
T Consensus 551 fiK~d~~~i 559 (592)
T 4gwm_A 551 FIKGDDVYI 559 (592)
T ss_dssp SSBTTBEEE
T ss_pred cccCCeEEE
Confidence 888875443
No 15
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=98.62 E-value=6.5e-09 Score=79.59 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=39.0
Q ss_pred CCCcceEEEeccccCCCCC-------ccCCCcEEeC--CeEEEEEEecCCCCCC
Q 030279 132 ASNYKHVWKIKNFSKLPDN-------IYESEVFVAG--DQKWYVYFLKWCSNPN 176 (180)
Q Consensus 132 ~~~~~~tW~i~nFs~l~~~-------~~~S~~F~vg--~~~w~i~~yp~g~~~~ 176 (180)
...+.|+|.|.||+.+++. .+.|+.|.+| |++|+|.+||+|++.+
T Consensus 21 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~ 74 (178)
T 4gjh_A 21 CYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSG 74 (178)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGG
T ss_pred ccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCC
Confidence 4568999999999998642 6789999999 9999999999998654
No 16
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.62 E-value=8.4e-09 Score=80.48 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCCcceEEEeccccCCCC-------CccCCCcEEeC--CeEEEEEEecCCCCCC
Q 030279 132 ASNYKHVWKIKNFSKLPD-------NIYESEVFVAG--DQKWYVYFLKWCSNPN 176 (180)
Q Consensus 132 ~~~~~~tW~i~nFs~l~~-------~~~~S~~F~vg--~~~w~i~~yp~g~~~~ 176 (180)
...+.|+|.|.|||.+++ ..+.|+.|.+| |++|+|.+||+|++.+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~ 90 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG 90 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCC
Confidence 356899999999999864 46889999999 9999999999998653
No 17
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=98.58 E-value=8.6e-09 Score=79.71 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCCcceEEEeccccCCCCC-------ccCCCcEEe--CCeEEEEEEecCCCCCC
Q 030279 132 ASNYKHVWKIKNFSKLPDN-------IYESEVFVA--GDQKWYVYFLKWCSNPN 176 (180)
Q Consensus 132 ~~~~~~tW~i~nFs~l~~~-------~~~S~~F~v--g~~~w~i~~yp~g~~~~ 176 (180)
...+.|+|.|.||+.+++. .+.|+.|.+ ||++|+|.+||+|++.+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~ 93 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG 93 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCC
Confidence 4678999999999998743 378999999 99999999999997643
No 18
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.53 E-value=1.5e-08 Score=78.59 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCcceEEEeccccCCCCC-------ccCCCcEEeC--CeEEEEEEecCCCCCC
Q 030279 133 SNYKHVWKIKNFSKLPDN-------IYESEVFVAG--DQKWYVYFLKWCSNPN 176 (180)
Q Consensus 133 ~~~~~tW~i~nFs~l~~~-------~~~S~~F~vg--~~~w~i~~yp~g~~~~ 176 (180)
..+.|+|.|.|||.+++. .+.|+.|.+| |++|+|.+||+|++.+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~ 90 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG 90 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGG
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCC
Confidence 567899999999998631 4779999999 9999999999998643
No 19
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=83.75 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=35.1
Q ss_pred CCcceEEEeccccCCCCCccCCCcEEeCCeEEEEEEecCCCC
Q 030279 133 SNYKHVWKIKNFSKLPDNIYESEVFVAGDQKWYVYFLKWCSN 174 (180)
Q Consensus 133 ~~~~~tW~i~nFs~l~~~~~~S~~F~vg~~~w~i~~yp~g~~ 174 (180)
..+.|+|.|.|||.+++ .+.|+.|.|||++|||.+||+|+.
T Consensus 29 ~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~ 69 (522)
T 2f1z_A 29 SEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYP 69 (522)
T ss_dssp SEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC---
T ss_pred CCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCC
Confidence 45689999999999987 678999999999999999999964
No 20
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=98.45 E-value=3e-08 Score=74.80 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=37.0
Q ss_pred CCCcceEEEeccccCCCCC-------ccCCCcEE--eCCeEEEEEEecCCCCC
Q 030279 132 ASNYKHVWKIKNFSKLPDN-------IYESEVFV--AGDQKWYVYFLKWCSNP 175 (180)
Q Consensus 132 ~~~~~~tW~i~nFs~l~~~-------~~~S~~F~--vg~~~w~i~~yp~g~~~ 175 (180)
...+.|+|.|.||+.+++. ...|+.|. +||++|+|.+||+|++.
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~ 68 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT 68 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCC
Confidence 3568999999999998642 26799996 89999999999999764
No 21
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=98.44 E-value=2.7e-08 Score=79.09 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCcceEEEeccccCCCC-------CccCCCcEEeC--CeEEEEEEecCCCCCC
Q 030279 133 SNYKHVWKIKNFSKLPD-------NIYESEVFVAG--DQKWYVYFLKWCSNPN 176 (180)
Q Consensus 133 ~~~~~tW~i~nFs~l~~-------~~~~S~~F~vg--~~~w~i~~yp~g~~~~ 176 (180)
..+.|+|.|.|||.+.+ ..+.|+.|.+| |++|+|.+||+|++.+
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~ 126 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG 126 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGG
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCC
Confidence 56789999999999863 26789999999 9999999999998653
No 22
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=97.16 E-value=0.00022 Score=52.90 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.2
Q ss_pred ccCCCcEEeC--CeEEEEEEecCCCCCC
Q 030279 151 IYESEVFVAG--DQKWYVYFLKWCSNPN 176 (180)
Q Consensus 151 ~~~S~~F~vg--~~~w~i~~yp~g~~~~ 176 (180)
.+.|+.|.+| |++|+|.+||+|++.+
T Consensus 28 ~i~S~~F~vg~~Gy~w~i~~yP~G~~~~ 55 (160)
T 1lb6_A 28 VIHSPGFYTGKPGYKLCMRLHLQLPTAQ 55 (160)
T ss_dssp EEECCCEESSSSCCEEEEEEEECCTTCT
T ss_pred EEECcCeecCCCCeeEEEEEEecCCCCC
Confidence 5779999999 9999999999998653
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=93.84 E-value=2.9 Score=37.32 Aligned_cols=137 Identities=18% Similarity=0.302 Sum_probs=78.2
Q ss_pred CcEEEEEEcCccccccCCCCeEEccceee--cCeEEEEEEeeCCCcCCCCCCcEEEEEEeecCCC--------------C
Q 030279 20 PAHFLLKIEAFSSLVENDVENYKSLEFDA--GGYKWKLVVYPNGNKNENVKDHISIYLAMVDTSS--------------L 83 (180)
Q Consensus 20 ~~~~~w~I~~fS~l~~~~~~~~~S~~F~v--gG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~~~--------------~ 83 (180)
.|.|.+ |+.-+.. ....-.+.|+.|.. +.+..++.+|=.|.. .+-|.|||....... -
T Consensus 286 ~G~Ymy-iesS~~~-~g~~ArL~Sp~~~p~~~~~CL~FwYhMyG~~----vG~L~Vyv~~~~~~~~~~~~~~lw~~sG~q 359 (592)
T 4gwm_A 286 SGFFMH-FDSSSVN-VGATAVLESRTLYPKRGFQCLQFYLYNSGSE----SDQLNIYIREYSADNVDGNLTLVEEIKEIP 359 (592)
T ss_dssp CCCEEE-EECSSSC-TTCEEEEECCCBCCSSSCEEEEEEEEECSCT----TCEEEEEEEEEETTEEEEEEEEEEEEESCC
T ss_pred ceEEEE-EECCCCC-CCCEEEEEcCCccCCCCCeEEEEEeEccCCC----CCEEEEEEEeccccCCCCceEEEEEEecCC
Confidence 467776 4442221 11234688998864 456666677777754 567999987533210 0
Q ss_pred CCCcEEEEEEEEEEEeCCCCceeEEeeEE--eccccccccce----EeceecccCCCcceEEEeccccCCC---CCccCC
Q 030279 84 GLGWEVYVIFRLFVLDQKKDEFLILQEVF--VKETKKCTGEC----LSMKKLTSASNYKHVWKIKNFSKLP---DNIYES 154 (180)
Q Consensus 84 ~~~~~~~a~f~~~llnq~~~~~~~~~dvF--~~~~~~~~~e~----~s~~~~~~~~~~~~tW~i~nFs~l~---~~~~~S 154 (180)
...| ..|++.|. ...++.+ || .+......+.. +++. +-.-..+.|.|+||+.|- .....|
T Consensus 360 G~~W-~~a~V~l~----~~~~fqI---vFEgvrG~g~~~GDIAIDDIs~t---~G~CP~~vw~i~nfs~~l~~~~~~~~S 428 (592)
T 4gwm_A 360 TGSW-QLYHVTLK----VTKKFRV---VFEGRKGSGASLGGLSIDDINLS---ETRCPHHIWHIRNFTQFIGSPNGTLYS 428 (592)
T ss_dssp BSSC-EEEEEEEC----CCSCEEE---EEEEECCSSCCSSEEEEEEEEEE---SSCCCSEEEEECSCGGGTTCTTCEEEC
T ss_pred CCce-EEEEEEEc----CCCCEEE---EEEEEECCCCCCceEEEeeEEEe---eCCCCCCceeecCHHHhhcCCCCceeC
Confidence 1124 23444432 1223333 56 23221112221 2233 345668999999999974 235667
Q ss_pred CcEEe-CCeEEEEEEecCCC
Q 030279 155 EVFVA-GDQKWYVYFLKWCS 173 (180)
Q Consensus 155 ~~F~v-g~~~w~i~~yp~g~ 173 (180)
+.|.- .|++++|.+||+|.
T Consensus 429 p~Fys~~GY~~~v~l~~~~~ 448 (592)
T 4gwm_A 429 PPFYSSKGYAFQIYLNLAHV 448 (592)
T ss_dssp CCEECTTSCEEEEEEECCSS
T ss_pred CCccCCCCeEEEEEEecCCC
Confidence 77764 59999999999773
No 24
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=54.46 E-value=2.8 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.9
Q ss_pred cCCCcEEEEEEcCccccccCCCCeEEccceeec
Q 030279 17 HVPPAHFLLKIEAFSSLVENDVENYKSLEFDAG 49 (180)
Q Consensus 17 ~~~~~~~~w~I~~fS~l~~~~~~~~~S~~F~vg 49 (180)
...+|-|.|+|.+|+..| +.+..+.|-.|.|-
T Consensus 8 v~~~gd~vwkIs~F~~RK-peGty~nsvsFnI~ 39 (133)
T 3v0r_A 8 VTTEGDYVWKISEFYGRK-PEGTYYNSLGFNIK 39 (133)
T ss_dssp SCCCCTTEEEEEEEEEEE-TTSSSCSEEEEEEE
T ss_pred cccCCceEEEeeeeeeEc-CCCCceeeEEEEEE
Confidence 356788999999999886 35777888888653
No 25
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=44.52 E-value=28 Score=24.71 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCCeEEccceeecCeEEEEEEeeCCCcCCCCCCcEEEEEEeecC
Q 030279 37 DVENYKSLEFDAGGYKWKLVVYPNGNKNENVKDHISIYLAMVDT 80 (180)
Q Consensus 37 ~~~~~~S~~F~vgG~~Wrl~~yP~G~~~~~~~~~lSlyL~l~~~ 80 (180)
..+.|. .|.|||+...|..||. +||.+|-.+...
T Consensus 22 ~~e~I~--SL~Vd~~t~hite~p~--------~~LlmFs~L~~~ 55 (130)
T 1jya_A 22 TIEPVI--GVKVGEFACHITEHPV--------GQILMFTLPSLD 55 (130)
T ss_dssp SCCSEE--EEEETTEEEEEEECST--------TEEEEEECCCCC
T ss_pred CcCceE--EEEECCeEEEEEecCC--------CeEEEEeccCcc
Confidence 356666 5899999999999994 589999887654
No 26
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=35.31 E-value=32 Score=23.32 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.5
Q ss_pred eecCeEEEEEEeeCCC
Q 030279 47 DAGGYKWKLVVYPNGN 62 (180)
Q Consensus 47 ~vgG~~Wrl~~yP~G~ 62 (180)
.++|+.|+-.++|.|+
T Consensus 59 tI~g~~~~tsL~p~g~ 74 (104)
T 2d9r_A 59 TFDGYPYTGYIVRMGL 74 (104)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 6899999999999984
No 27
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=21.59 E-value=42 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=10.8
Q ss_pred cEEEEEEcCccccccCCCCeEEcccee-----ecCeEEEEEE
Q 030279 21 AHFLLKIEAFSSLVENDVENYKSLEFD-----AGGYKWKLVV 57 (180)
Q Consensus 21 ~~~~w~I~~fS~l~~~~~~~~~S~~F~-----vgG~~Wrl~~ 57 (180)
|+..+.|.||+.-..|.+ .|+ -|.+.|||+.
T Consensus 2 ~~~~~~~~~~~~~~~Mag------~FEi~~~~~G~~rfrLka 37 (130)
T 2k8e_A 2 GHMLFSIHNFNQGVIMAG------WFELSKSSDNQFRFVLKA 37 (130)
T ss_dssp ------------CCCCCC------EEEEEECTTCCEEEEEEC
T ss_pred CcEEEEEeccCccceeee------eEEEEEcCCCCEEEEEEe
Confidence 567889999988654433 343 3568888863
No 28
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=21.54 E-value=1.3e+02 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.3
Q ss_pred cceeecCeEEEEEEeeCCCc
Q 030279 44 LEFDAGGYKWKLVVYPNGNK 63 (180)
Q Consensus 44 ~~F~vgG~~Wrl~~yP~G~~ 63 (180)
-.|.+|++.++|..+-.|+.
T Consensus 55 t~F~lg~~~c~I~a~sSG~k 74 (94)
T 2kd2_A 55 THFSVGNHDCYIKAVSSGKR 74 (94)
T ss_dssp EEEEETTEEEEEEEEEESSS
T ss_pred EEEEeCCceEEEEEEecCCC
Confidence 35899999999999998876
Done!