Query 030281
Match_columns 180
No_of_seqs 126 out of 1056
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulp_A Single-strand binding p 100.0 3E-32 1E-36 206.7 14.3 117 48-167 4-123 (124)
2 3tqy_A Single-stranded DNA-bin 100.0 1.6E-31 5.6E-36 210.9 15.5 115 46-167 3-118 (158)
3 1qvc_A Single stranded DNA bin 100.0 1.7E-31 5.7E-36 207.9 15.2 115 47-168 2-119 (145)
4 3vdy_A SSB, single-stranded DN 100.0 2E-31 7E-36 199.7 14.1 109 48-166 3-111 (116)
5 3lgj_A Single-stranded DNA-bin 100.0 1.6E-31 5.4E-36 213.2 13.8 119 48-169 21-140 (169)
6 3pgz_A Single-stranded DNA-bin 100.0 1.9E-31 6.5E-36 216.6 14.5 121 46-169 21-143 (193)
7 2vw9_A Single-stranded DNA bin 100.0 4.2E-31 1.4E-35 203.2 14.4 111 49-167 1-111 (134)
8 1z9f_A Single-strand binding p 100.0 1.8E-31 6.1E-36 209.8 12.0 115 44-167 10-125 (153)
9 3ull_A DNA binding protein; DN 100.0 1.3E-31 4.6E-36 205.2 10.9 115 45-166 8-129 (132)
10 3k7u_C MP18 RNA editing comple 100.0 1.9E-31 6.5E-36 208.7 11.2 121 47-173 3-126 (148)
11 3afp_A Single-stranded DNA-bin 100.0 1.5E-30 5.1E-35 207.2 12.3 114 47-164 1-116 (168)
12 1eqq_A Single stranded DNA bin 100.0 4.6E-31 1.6E-35 212.0 8.9 113 47-166 3-118 (178)
13 3koj_A Uncharacterized protein 100.0 2.6E-30 9E-35 192.6 11.4 98 48-159 9-107 (108)
14 4dam_A Single-stranded DNA-bin 100.0 1E-29 3.4E-34 194.5 13.7 104 48-160 13-117 (128)
15 3k81_C MP18 RNA editing comple 100.0 1.8E-29 6.2E-34 200.1 10.5 121 48-174 20-143 (164)
16 3eiv_A Single-stranded DNA-bin 100.0 7.1E-29 2.4E-33 202.4 14.1 108 47-160 1-108 (199)
17 1v1q_A Primosomal replication 100.0 1.3E-28 4.5E-33 189.7 10.5 109 45-166 14-122 (134)
18 1se8_A Single-strand binding p 99.9 1.4E-27 4.9E-32 205.3 14.2 112 47-166 1-114 (301)
19 2fxq_A Single-strand binding p 99.9 1.7E-27 5.8E-32 200.8 13.6 117 40-168 117-234 (264)
20 4dni_A Fusion protein of RNA-e 99.9 4.6E-27 1.6E-31 198.2 13.7 110 47-163 143-256 (257)
21 2fxq_A Single-strand binding p 99.9 2.1E-27 7.1E-32 200.3 11.4 110 47-165 1-111 (264)
22 1se8_A Single-strand binding p 99.9 6.8E-27 2.3E-31 201.1 13.2 120 39-167 117-237 (301)
23 1txy_A Primosomal replication 99.9 4.1E-27 1.4E-31 173.6 9.2 103 49-164 1-103 (104)
24 3k8a_A Putative primosomal rep 99.9 1E-25 3.5E-30 166.4 8.7 101 45-162 2-102 (103)
25 4gs3_A Single-stranded DNA-bin 99.9 2.5E-25 8.6E-30 165.4 10.3 95 50-162 11-106 (107)
26 3fhw_A Primosomal replication 99.9 2.7E-25 9.2E-30 167.2 10.1 102 50-167 1-102 (115)
27 3en2_A Probable primosomal rep 99.9 1.5E-22 5E-27 149.1 7.3 84 50-139 2-85 (101)
28 3stb_C RNA-editing complex pro 99.8 1.7E-20 6E-25 146.0 13.8 97 45-151 40-136 (148)
29 4dni_A Fusion protein of RNA-e 99.8 1.4E-20 4.9E-25 158.6 9.8 100 45-160 26-126 (257)
30 4dka_C RNA-editing complex pro 97.7 0.00078 2.7E-08 49.1 11.6 95 52-161 5-104 (105)
31 3dm3_A Replication factor A; p 96.4 0.01 3.5E-07 42.9 7.2 84 51-161 15-100 (105)
32 3e0e_A Replication protein A; 96.3 0.011 3.9E-07 41.9 6.4 79 51-159 12-94 (97)
33 2k75_A Uncharacterized protein 96.1 0.074 2.5E-06 38.2 10.3 81 49-163 12-95 (106)
34 1o7i_A SSB, SSO2364, single st 95.9 0.073 2.5E-06 38.8 9.4 94 50-177 12-109 (119)
35 2k50_A Replication factor A re 95.9 0.034 1.2E-06 40.0 7.5 84 52-161 18-105 (115)
36 1ynx_A Replication factor-A pr 95.7 0.038 1.3E-06 40.1 7.3 96 48-161 12-109 (114)
37 1jmc_A Protein (replication pr 94.2 0.23 7.7E-06 40.0 8.7 99 49-164 17-116 (246)
38 4gop_C Putative uncharacterize 91.4 1.2 4E-05 39.2 9.7 97 48-163 11-110 (444)
39 3f2b_A DNA-directed DNA polyme 90.1 3.7 0.00013 40.4 12.7 72 49-138 16-89 (1041)
40 3au7_A TIAS, putative uncharac 88.8 2.5 8.5E-05 37.3 9.6 68 45-133 279-348 (402)
41 3kdf_D Replication protein A 3 88.3 3.9 0.00013 29.8 9.1 79 50-163 31-111 (132)
42 2hql_A Hypothetical protein Mg 85.8 7.5 0.00026 27.5 11.5 86 48-148 6-91 (110)
43 4gop_B Putative uncharacterize 84.9 2.1 7.1E-05 31.5 6.0 78 49-162 35-115 (136)
44 1ltl_A DNA replication initiat 84.0 1.3 4.4E-05 36.7 4.9 63 99-173 197-259 (279)
45 2pi2_A Replication protein A 3 82.7 6 0.00021 32.5 8.5 63 49-133 70-134 (270)
46 2kbn_A Conserved protein; nucl 82.4 11 0.00037 26.7 9.1 81 50-163 15-96 (109)
47 2vl6_A SSO MCM N-TER, minichro 81.2 3.6 0.00012 33.5 6.6 56 99-163 210-267 (268)
48 1wjj_A Hypothetical protein F2 73.0 13 0.00045 28.0 7.1 48 102-163 75-122 (145)
49 2hpi_A DNA polymerase III alph 68.8 6.1 0.00021 39.5 5.5 64 52-133 1044-1107(1220)
50 3kf6_A Protein STN1; OB fold, 59.9 54 0.0019 24.8 9.5 80 49-163 46-128 (159)
51 2hbp_A Cytoskeleton assembly c 59.2 12 0.00042 24.9 3.9 35 129-164 1-35 (68)
52 1jmc_A Protein (replication pr 54.6 30 0.001 27.2 6.4 68 52-136 140-210 (246)
53 1nnx_A Protein YGIW; structura 53.1 40 0.0014 24.1 6.2 76 46-162 33-108 (109)
54 3e0e_A Replication protein A; 44.5 30 0.001 23.7 4.3 48 117-165 6-58 (97)
55 4hik_A Protection of telomeres 38.5 23 0.00077 26.7 3.0 27 101-128 66-92 (143)
56 3f9v_A Minichromosome maintena 37.9 20 0.0007 32.5 3.2 69 98-174 203-272 (595)
57 3ebe_A Protein MCM10 homolog; 37.6 31 0.001 27.3 3.8 63 52-129 57-119 (200)
58 3i7f_A Aspartyl-tRNA synthetas 35.6 2.5E+02 0.0086 25.4 10.3 59 101-164 91-153 (548)
59 3kf8_A Protein STN1; OB fold; 34.8 92 0.0031 25.1 6.3 94 49-164 84-185 (220)
60 1eov_A ASPRS, aspartyl-tRNA sy 33.8 96 0.0033 27.5 6.8 46 115-165 86-131 (487)
61 2k50_A Replication factor A re 30.4 1.1E+02 0.0038 20.9 5.5 48 117-165 11-63 (115)
62 2gjh_A Designed protein; oblig 28.1 38 0.0013 21.3 2.3 15 121-135 40-54 (62)
63 3a74_A Lysyl-tRNA synthetase; 27.4 1.3E+02 0.0045 26.7 6.6 79 52-164 58-139 (493)
64 1gm5_A RECG; helicase, replica 24.2 66 0.0023 30.3 4.2 89 52-164 167-260 (780)
65 1o7i_A SSB, SSO2364, single st 23.7 1.9E+02 0.0064 20.1 6.8 46 118-164 7-57 (119)
66 3bju_A Lysyl-tRNA synthetase; 23.7 1.6E+02 0.0054 26.4 6.5 80 52-164 57-141 (521)
67 4gop_C Putative uncharacterize 22.0 78 0.0027 27.3 4.0 69 53-136 136-209 (444)
68 2isb_A Fumarase, FUM-1; NP_069 21.8 69 0.0023 25.3 3.2 24 111-134 23-46 (192)
69 1wyd_A Hypothetical aspartyl-t 21.7 1.1E+02 0.0039 26.5 5.0 80 52-164 18-98 (429)
70 1e1o_A Lysyl-tRNA synthetase, 20.6 1.4E+02 0.0049 26.6 5.5 79 52-164 66-148 (504)
71 4ex5_A Lysine--tRNA ligase; st 20.1 1.7E+02 0.0057 26.4 5.8 79 52-164 88-169 (529)
No 1
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=100.00 E-value=3e-32 Score=206.73 Aligned_cols=117 Identities=28% Similarity=0.480 Sum_probs=101.8
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecC-chhHHHHHHhcCCCCeEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~g-k~~Ae~~~~~l~KG~~V~ 126 (180)
++||+|+|+|||++||++|++++|+++++|+||+++.|+++++|++ .+.++||+|++|| + +|+.++++|+||++|+
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~--~~~t~~~~v~~wg~~-~Ae~~~~~l~KG~~V~ 80 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNEL--KSKTDWHRIVVYDQN-IVDLIDKYLRKGRRVY 80 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEECCHH-HHHHHHHHCCTTCEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcE--ecccEEEEEEEEEch-HHHHHHhhcCCCCEEE
Confidence 6899999999999999999999999999999999999988756875 4689999999999 7 9999999999999999
Q ss_pred EEEEeEEeeeecCC-CCeEEEEEEEEEEe-CCceEEecCCCCC
Q 030281 127 VEGDIEIRVYNDSI-NGEVKNIPEICIRR-DGTLRLVKSGESI 167 (180)
Q Consensus 127 VeGrL~~~~y~d~~-dG~~~~~~eI~v~~-~g~i~~l~~k~~~ 167 (180)
|+|+|+++.|+++. +|++++.++|+|+. .++|+||+++++.
T Consensus 81 V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~~ 123 (124)
T 3ulp_A 81 VQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRNF 123 (124)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-----
T ss_pred EEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCCC
Confidence 99999999999864 79999999999974 4479999998753
No 2
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.97 E-value=1.6e-31 Score=210.87 Aligned_cols=115 Identities=26% Similarity=0.473 Sum_probs=103.0
Q ss_pred ccc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 46 GFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 46 ~m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
.|+ +||+|+|+|||++||++|++++|+.+++|+||+++.|+++.+|++ .+.++||+|++||+ +|+.+.++|+||++
T Consensus 3 ~Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~--~e~t~~i~vv~wg~-~Ae~~~~~l~KG~~ 79 (158)
T 3tqy_A 3 AMARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGEL--QERTEWHRIAFFNR-LAEIVGEYLRKGSK 79 (158)
T ss_dssp -CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCE--EEEEEEEEEEEETH-HHHHHHHHCCTTCE
T ss_pred chhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCE--eeeeEEEEEEEEhH-HHHHHHhhcCCCCE
Confidence 365 899999999999999999999999999999999999987645875 45899999999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 167 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~ 167 (180)
|+|+|+|+++.|+++ +|++++.++|+|+ +|+||.++...
T Consensus 80 V~VeG~L~~~~~~dk-dG~~r~~~eV~a~---~i~~L~~k~~~ 118 (158)
T 3tqy_A 80 IYIEGSLRTRKWQDK-NGVDRYTTEIIAN---EMHMLDNRGGG 118 (158)
T ss_dssp EEEEEEEEEEEEECS-SSCEEEEEEEEEE---EEEECC-----
T ss_pred EEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEccCCccc
Confidence 999999999999998 9999999999999 99999988753
No 3
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.97 E-value=1.7e-31 Score=207.93 Aligned_cols=115 Identities=25% Similarity=0.494 Sum_probs=106.4
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
+++||+|+|+|||++||++|++++|.++++|+||+++.|+++++|++ .+.++||+|++|++ +|+.++++|+||++|+
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~ 78 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 78 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSC--CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcE--ecccEEEEEEEehH-HHHHHHHhcCCCCEEE
Confidence 57899999999999999999999999999999999999887655775 56899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEE---EEEeCCceEEecCCCCCC
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEI---CIRRDGTLRLVKSGESIS 168 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI---~v~~~g~i~~l~~k~~~~ 168 (180)
|+|+|+++.|+++ +|++++.++| +++ +|+||.++....
T Consensus 79 V~G~L~~~~~~d~-dG~~r~~~ei~a~va~---~i~~l~~~~~~~ 119 (145)
T 1qvc_A 79 IEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQGGG 119 (145)
T ss_dssp EEEEEEEEEECSS-SSCEEEEEEEECTTCE---EEECCCCSCCCS
T ss_pred EEEEEEeeEEECC-CCcEEEEEEEeeeEeC---EEEEccCCCcCc
Confidence 9999999999998 9999999999 888 999999886543
No 4
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.97 E-value=2e-31 Score=199.70 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=95.7
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 127 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~V 127 (180)
.|||+|+|+|||++||+++++++|.++++|+||+++.|+++ +|+ ..++||+|++||+ +|+.+.++|+||++|+|
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~-~g~----~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V 76 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNA-SGE----IEADYVNCTLWRK-TAENTALYCQKGSLVGV 76 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCS-SSC----CCEEEEEEEEEHH-HHHHHHHHCCTTCEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCC-CCc----cccEEEEEEEECH-HHHHHHHhCCCCCEEEE
Confidence 37999999999999999999999999999999999988776 375 3899999999999 99999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCC
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 166 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~ 166 (180)
+|+|+++.|+++ +|++++.++|+|+ .|+||+++++
T Consensus 77 ~G~l~~~~~~d~-dG~~~~~~ev~a~---~i~~l~~~~~ 111 (116)
T 3vdy_A 77 SGRIQTRSYENE-EGVNVYVTEVLAD---TVRFMDPKPR 111 (116)
T ss_dssp EEEEEEEEEC-----CCEEEEEEEEE---EEEECC----
T ss_pred EEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCc
Confidence 999999999998 9999999999999 9999998865
No 5
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.97 E-value=1.6e-31 Score=213.21 Aligned_cols=119 Identities=27% Similarity=0.465 Sum_probs=88.7
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 127 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~V 127 (180)
.+||+|+|+|||++||++|++++|+.+++|+||++++|+++++|++ .+.++||+|++||+++|+.+.++|+||++|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~--~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQK--VEKTEWHSVVVFNPHFAKIALQYLHKGSKVYI 98 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC--------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCcc--ccccEEEEEEEeCHHHHHHHHHhCCCCCEEEE
Confidence 6899999999999999999999999999999999999987655775 56899999999997689999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEe-CCceEEecCCCCCCC
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSGESISK 169 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~-~g~i~~l~~k~~~~~ 169 (180)
+|+|+++.|+++ +|++++.++|+|+. ..+|+||++++..+.
T Consensus 99 eGrL~~r~~~dk-dG~~r~~~eIva~~~~~~i~~L~~k~~~~~ 140 (169)
T 3lgj_A 99 EGKLQTRKWQDK-NGHDRYTTEIVLPQYKGELHLLDAKKEQSA 140 (169)
T ss_dssp EEEEEEECC---------CEEEEEECTTCCEEEEECC------
T ss_pred EEEEEEEEEECC-CCCEEEEEEEEEEeccCcEEEccCCCcccc
Confidence 999999999998 99999999999963 458999999875443
No 6
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.97 E-value=1.9e-31 Score=216.60 Aligned_cols=121 Identities=24% Similarity=0.482 Sum_probs=100.3
Q ss_pred ccc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 46 GFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 46 ~m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
-|+ .||+|+|+|||++||++|++++|+++++|+||+++.|+++++|++ .+.|+||+|++|++.+|+.+.++|+||++
T Consensus 21 ~Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~--~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~ 98 (193)
T 3pgz_A 21 SMAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNER--KERTEWHNIVIFNENLVKVVEQYLKKGSK 98 (193)
T ss_dssp --CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-------EEEEEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred hHhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCce--eeeeEEEEEEEECHHHHHHHHhhcCCCCE
Confidence 455 699999999999999999999999999999999999987655765 45899999999995489999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEe-CCceEEecCCCCCCC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSGESISK 169 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~-~g~i~~l~~k~~~~~ 169 (180)
|+|+|+|+++.|+++ +|+++|.++|+|+. .++|+||+++.....
T Consensus 99 V~VeGrL~trswedk-dG~kr~~tEVva~~~~~~i~fL~sk~~~~~ 143 (193)
T 3pgz_A 99 IYIEGQLQTRKWQDQ-NGNDRYTTEIVLQKYRGELQMLDGRAAAGG 143 (193)
T ss_dssp EEEEEEEEEEEEECT-TSCEEEEEEEEECTTCCEEEECC-------
T ss_pred EEEEEEEEEEEeECC-CCCEEEEEEEEEEeccCceEECcCCCCCCC
Confidence 999999999999998 99999999999995 357999999876443
No 7
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.97 E-value=4.2e-31 Score=203.23 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=102.4
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 128 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve 128 (180)
|||+|+|+|||++||++|++++|.++++|+||++++|++++ |++ .+.++||+|++||+ +|+.++++|+||++|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~-G~~--~~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD-GTL--GEEVCFIDARLFGR-TAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS-SCE--EEEEEEEEEEEEHH-HHHHHHHHCCTTCEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC-CCC--ccccEEEEEEEEcH-HHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999999999999998874 775 45899999999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 167 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~ 167 (180)
|+|+++.|+++ +|++++.++|+|+ +|+||.++...
T Consensus 77 G~L~~~~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~~ 111 (134)
T 2vw9_A 77 GRLTYESWMDQ-TGKKNSRHTITAD---SLQFMDKKSDN 111 (134)
T ss_dssp EEEEEEEEECT-TSCEEEEEEEEEE---EEEECCCC---
T ss_pred EEEEeeeEECC-CCCEEEEEEEEEE---EEEEccCCccc
Confidence 99999999998 9999999999999 99999987643
No 8
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=1.8e-31 Score=209.79 Aligned_cols=115 Identities=21% Similarity=0.362 Sum_probs=87.2
Q ss_pred CcccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECC-ceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCC
Q 030281 44 GWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGG-LFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKN 122 (180)
Q Consensus 44 ~~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~-~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG 122 (180)
-|-|..||+|+|+|||++||++|++++|+.+|+|+||+++ .|+++ +|++ . .++||+|++||+ +|+.++++|+||
T Consensus 10 ~~~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~-~Ge~--~-~t~~~~v~~wg~-~Ae~~~~~l~KG 84 (153)
T 1z9f_A 10 HHHMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNA-PDDA--Q-TTDFFRIVTFGR-LAEFARTYLTKG 84 (153)
T ss_dssp --CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------CEEEEEEEEEHH-HHHHHHHHCCTT
T ss_pred cccccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccC-CCCE--e-eeEEEEEEEECH-HHHHHHhhCCCC
Confidence 3789999999999999999999999999999999999999 88776 4764 2 399999999999 999999999999
Q ss_pred CeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCC
Q 030281 123 SSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 167 (180)
Q Consensus 123 ~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~ 167 (180)
++|+|+|+|+++.|+++ +|++++.++|+|+ +|.+|.++...
T Consensus 85 ~~V~VeGrL~~~~~~dk-dG~~r~~~eV~a~---~i~~l~~~~~~ 125 (153)
T 1z9f_A 85 RLVLVEGEMRMRRWETP-TGEKRVSPEVVAN---VVRFMDRKPAE 125 (153)
T ss_dssp CEEEEEEEEEEEC--------CCCEEEEEEE---EEEECC-----
T ss_pred CEEEEEEEEEeceEECC-CCCEEEEEEEEEE---EEEEccCCCcc
Confidence 99999999999999998 9999999999999 99999987643
No 9
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.97 E-value=1.3e-31 Score=205.21 Aligned_cols=115 Identities=24% Similarity=0.442 Sum_probs=98.7
Q ss_pred cccc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceecc-----CCCcccCCCCceEEEEEecC-chhHHHHHH
Q 030281 45 WGFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQR-----IVGSKDLPKPVQWHRIAVHN-EILGSYAVK 117 (180)
Q Consensus 45 ~~m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~-----~~Ge~~~~~~t~w~~V~~~g-k~~Ae~~~~ 117 (180)
..|+ +||+|+|+|||++||++|++++|.++++|+||+++.|+++ .+|++ ...++||+|++|| + +|+.+++
T Consensus 8 ~~m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~--~~~t~w~~v~~wg~~-~Ae~~~~ 84 (132)
T 3ull_A 8 LVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDV--SQKTTWHRISVFRPG-LRDVAYQ 84 (132)
T ss_dssp --CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CC--EEEEEEEEEEECSTT-HHHHHHH
T ss_pred hhhhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCce--ecceEEEEEEEEchH-HHHHHHh
Confidence 4565 8999999999999999999999999999999999998763 23543 4689999999999 6 9999999
Q ss_pred hcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCC
Q 030281 118 QLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 166 (180)
Q Consensus 118 ~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~ 166 (180)
+|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||.+++.
T Consensus 85 ~l~KG~~V~V~G~L~~~~~~d~-dG~~r~~~ev~a~---~i~~l~~~~k 129 (132)
T 3ull_A 85 YVKKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIAD---NIIFLSDQTK 129 (132)
T ss_dssp HCCTTCEEEEEEEEECCCEESS-SSEECCCEEEEEE---EEECC-----
T ss_pred hCCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEccCCCc
Confidence 9999999999999999999998 9999999999999 9999988754
No 10
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.97 E-value=1.9e-31 Score=208.72 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=90.2
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchh-HHHHHHhcCCCCeE
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSV 125 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~-Ae~~~~~l~KG~~V 125 (180)
|++||+|+|+|||++||+ |++ +|+.+++|+||++++|++++ |++ |...++||+|++|++ + |+++++||+||++|
T Consensus 3 ~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~-Ge~-~~~~t~w~~vv~wgk-~lAe~~~~yl~KG~~V 77 (148)
T 3k7u_C 3 SKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHP-TQE-VVVEKDHHTIRCFGE-LFSAEVKQKVKEGNVV 77 (148)
T ss_dssp --CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-------------CEEEEEEEEESH-HHHHHHHHHCCTTCEE
T ss_pred cccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCC-CCE-EccccEEEEEEEECc-HHHHHHHhhCCCCCEE
Confidence 568999999999999999 999 99999999999999887763 663 357999999999999 7 99999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEe--CCceEEecCCCCCCCCChh
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRR--DGTLRLVKSGESISKISFD 173 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~--~g~i~~l~~k~~~~~~~~~ 173 (180)
+|+|+|+++.|+|+ +|+++|.++|++-. .|.+.+|.++......+..
T Consensus 78 ~VeGrL~~r~~~dk-dG~kr~~teVi~v~~~~g~~~ll~~~r~~~~~~~~ 126 (148)
T 3k7u_C 78 CVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVN 126 (148)
T ss_dssp EEEEEEEECCCSCC-C-----CCEEEEECTTTCEEEEEECCC--------
T ss_pred EEEEEEEeeeeECC-CCCEEEEEEEEEEecCCCeEEEccCCCCCCCCCCC
Confidence 99999999999998 99999999988642 5789999998765554443
No 11
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.97 E-value=1.5e-30 Score=207.25 Aligned_cols=114 Identities=19% Similarity=0.336 Sum_probs=94.1
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCC-CceEEEEEecCchhHHHHHHhcCCCCeE
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPK-PVQWHRIAVHNEILGSYAVKQLVKNSSV 125 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~-~t~w~~V~~~gk~~Ae~~~~~l~KG~~V 125 (180)
|.+||+|+|+|||++||++|++++|+.+++|+||++++++++++|++ .+ .++||+|++|++ +|++++++|+||++|
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~--~d~~t~~~~v~~wg~-~Ae~~~~~l~KG~~V 77 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEW--KDGEALFLRCNIWRE-AAENVAESLTRGARV 77 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CC--CCCCCEEEEEEEEHH-HHHHHHHHCCTTCEE
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcE--ecCCcEEEEEEEehH-HHHHHHHhCCCCCEE
Confidence 77899999999999999999999999999999999988876655765 44 699999999999 999999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEe-CCceEEecCC
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRR-DGTLRLVKSG 164 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~-~g~i~~l~~k 164 (180)
+|+|+|+++.|+++ +|++++.++|+|++ ...|+||.++
T Consensus 78 ~VeGrL~~~~~~dk-dG~~r~~~ev~a~~v~~~l~~l~~~ 116 (168)
T 3afp_A 78 IVTGRLKQRSFETR-EGEKRTVVEVEVDEIGPSLRYATAK 116 (168)
T ss_dssp EEEEEEEEEEEC-C-CSCCEEEEEEEEEEEEECCSSEEEE
T ss_pred EEEEEEEeeeEECC-CCcEEEEEEEEEEEeecCEEEeccc
Confidence 99999999999998 99999999998873 3356777655
No 12
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.97 E-value=4.6e-31 Score=212.02 Aligned_cols=113 Identities=26% Similarity=0.515 Sum_probs=103.0
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
|++||+|+|+|||++||++|++++|+.+++|+||+++.|+++.+|++ .+.++||+|++|++ +|+.++++|+||++|+
T Consensus 3 ~~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~--~~~t~~i~vv~wg~-~Ae~~~~~l~KG~~V~ 79 (178)
T 1eqq_A 3 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEM--KEQTEWHRVVLFGK-LAEVASEYLRKGSQVY 79 (178)
T ss_dssp CCCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSC--CCEEEEEEEEECHH-HHHHHHHHCCTTCEEE
T ss_pred ccCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCce--ecccEEEEEEEccH-HHHHHHHhcCCCCEEE
Confidence 45899999999999999999999999999999999999887655775 56899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEE---EEEeCCceEEecCCCC
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEI---CIRRDGTLRLVKSGES 166 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI---~v~~~g~i~~l~~k~~ 166 (180)
|+|+|+++.|+++ +|++++.++| +++ +|+||.++..
T Consensus 80 VeGrL~~r~~~dk-dG~~r~~~eI~v~va~---~i~~l~~~~~ 118 (178)
T 1eqq_A 80 IEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQMLGGRQG 118 (178)
T ss_dssp ECCEEEEEEEECS-SSEEEEEEEEECSSSC---CEECSCC---
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEeeeecC---eEEEccccCC
Confidence 9999999999998 9999999999 677 9999988754
No 13
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.97 E-value=2.6e-30 Score=192.59 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=81.3
Q ss_pred ccccEEEEEEEeCCCCeEEEecCC-eEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNG-KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG-~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
.-||.|+|+|||++||++|++++| .++++|+||++ .|++. +.++||+|++||+ +|+.+.+||+||++|+
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~--------~~t~fi~vv~wgk-~AE~~~~yl~KG~~V~ 78 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSK--------DAPARLKVVGWGA-VAQELQDRCRLNDEVV 78 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-------------CCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccC--------CCcEEEEEEEEhH-HHHHHHHhCCCCCEEE
Confidence 569999999999999999999998 99999999999 56532 3799999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCceE
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLR 159 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~ 159 (180)
|+|+|+++.|+++ +|++++.+||+|+ +|.
T Consensus 79 VeGrL~~r~y~~k-dG~kr~~tEVva~---~i~ 107 (108)
T 3koj_A 79 LEGRLRINSLLKP-DGNREKQTELTVT---RVH 107 (108)
T ss_dssp EEEEEEEEC---------CCEEEEEEE---EEE
T ss_pred EEEEEEeeeEECC-CCCEEEEEEEEEE---EEE
Confidence 9999999999998 9999999999999 664
No 14
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.97 E-value=1e-29 Score=194.49 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=96.3
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCC-CceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPK-PVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~-~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
-.+|+|+|+|||++||++|++++| ++++|+||+++.|+++++|++ .+ .|+||+|++||+ +|+.++++|+||++|+
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~--~d~~t~w~~v~~wg~-~Ae~~~~~l~KG~~V~ 88 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAW--TDGHTNFFTVWANRQ-LATNASGSLAVGDPVV 88 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEE--EEEEEEEEEEEEEHH-HHHHHHHHCCTTCEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCce--ecCCcEEEEEEEEcH-HHHHHHHhcCCCCEEE
Confidence 359999999999999999999999 999999999999988766875 34 899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEE
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRL 160 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~ 160 (180)
|+|+|+++.| ++ +|++++.++|+|+ .|-.
T Consensus 89 VeGrL~~~~~-dk-dG~~r~~~ev~a~---~vg~ 117 (128)
T 4dam_A 89 VQGRLKVRTD-VR-EGQSRTSADIDAV---AIGH 117 (128)
T ss_dssp EEEEEEEEEE-EE-TTEEEEEEEEEEE---EEEE
T ss_pred EEEEEEEeEE-cC-CCCEEEEEEEEEE---EEEe
Confidence 9999999999 88 9999999999999 6654
No 15
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.96 E-value=1.8e-29 Score=200.12 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=91.8
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchh-HHHHHHhcCCCCeEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-GSYAVKQLVKNSSVY 126 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~-Ae~~~~~l~KG~~V~ 126 (180)
.+||+|+|+|||++||++|+++ ..+++|+||+++++.++++|++ ...++||+|++||+ + |+.+.+||+||++|+
T Consensus 20 ~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~--~~~Tdw~~Vv~wgk-~lAE~~~~yL~KGs~V~ 94 (164)
T 3k81_C 20 KSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEV--VVEKDHHTIRCFGE-LFSAEVKQKVKEGNVVC 94 (164)
T ss_dssp CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------C--CCCCEEEEEEECCH-HHHHHHHHHCCTTCEEE
T ss_pred cCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcC--ccceEEEEEEEECC-HHHHHHHhhcCCCCEEE
Confidence 5699999999999999999998 8999999999977766555664 57899999999999 8 999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEE-EEEEEEE-eCCceEEecCCCCCCCCChhh
Q 030281 127 VEGDIEIRVYNDSINGEVKN-IPEICIR-RDGTLRLVKSGESISKISFDD 174 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~-~~eI~v~-~~g~i~~l~~k~~~~~~~~~~ 174 (180)
|+|+|+++.|+|+ +|++++ ...|+|. ..|.+++|+++......+...
T Consensus 95 VeGrL~tr~w~D~-~g~k~~~~~~i~V~~~~g~l~~L~~~r~~~~~~~~~ 143 (164)
T 3k81_C 95 VNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHGDRRTVPAAVNP 143 (164)
T ss_dssp ECCEEEEECCCCS-SCSCCCCEEEEEECTTTCCEEEECC-----------
T ss_pred EEEEEEeeeEEcC-CCCEEEEEEEEEEeCCCCEEEEecCCCCCCCCcCCc
Confidence 9999999999998 886655 5556666 358999999886555544443
No 16
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.96 E-value=7.1e-29 Score=202.36 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=81.4
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
|+.+|+|+|+|||++||++|++++|+.+++|+||+++++.++++|++. ...++||+|++|++ +|+.++++|+||++|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~-d~~T~wi~Vvawgk-lAE~v~~~L~KG~~V~ 78 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWK-DGESLFLTCSVWRQ-AAENVAESLQRGMRVI 78 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC------------CCCCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEe-cCccEEEEEEEEhH-HHHHHHHhcCCCCEEE
Confidence 788999999999999999999999999999999999665555456642 23899999999999 9999999999999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEE
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRL 160 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~ 160 (180)
|+|+|+++.|+++ +|++++.++|+|+ +|.+
T Consensus 79 VeGrL~~rswedk-dG~kr~~~eVvA~---~Ig~ 108 (199)
T 3eiv_A 79 VQGRLKQRSYEDR-EGVKRTVYELDVD---EVGA 108 (199)
T ss_dssp EEEEEEEEC---------CCEEEEEEE---EEEE
T ss_pred EEEEEEeeEEECC-CCCEEEEEEEEEE---EEec
Confidence 9999999999998 9999999999999 5544
No 17
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.95 E-value=1.3e-28 Score=189.73 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=95.0
Q ss_pred cccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 45 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 45 ~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
-+|.+||+|+|+|||++||++|++++|.++|+|+||++ ++++. +|++ .+.++||+|++||+ +|+.+.+||+||++
T Consensus 14 ~~m~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~-~G~~--~~~~~~i~vv~wGk-~AE~~~~yl~KGs~ 88 (134)
T 1v1q_A 14 PNSLMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE-AGFH--RQAWCQMPVIVSGH-ENQAITHSITVGSR 88 (134)
T ss_dssp CGGGCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE-TTEE--EEEEEEEEEEEEST-GGGGGGTTCCTTCE
T ss_pred cCCcceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC-CCCE--ecceEEEEEEEEhH-HHHHHHHhcCCCCE
Confidence 46777799999999999999999999999999999996 46554 4654 35678999999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 166 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~ 166 (180)
|+|+|+|+++. ++ +|++++.+ +|+ .|+||+++++
T Consensus 89 V~VeGrL~tr~--~k-~G~kr~~~--~a~---~i~~l~~k~~ 122 (134)
T 1v1q_A 89 ITVQGFISCHK--AK-NGLSKMVL--HAE---QIELIDSVDK 122 (134)
T ss_dssp EEEEEEEEEEC--TT-TTSCEEEE--EEE---EEEETTSCSC
T ss_pred EEEEEEEEEEE--CC-CCCEEEEE--EEE---EEEECcCCCC
Confidence 99999999984 66 89988876 788 8999998764
No 18
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.95 E-value=1.4e-27 Score=205.34 Aligned_cols=112 Identities=16% Similarity=0.270 Sum_probs=93.9
Q ss_pred cc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHh-cCCCCe
Q 030281 47 FR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQ-LVKNSS 124 (180)
Q Consensus 47 m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~-l~KG~~ 124 (180)
|. +||+|+|+|||++||++|++++|+.+++|+||+++.|+++ +|++ .+.++||+|++||+ +|+.+.++ |+||++
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~-~G~~--~~~t~~i~vv~~g~-~Ae~~~~~~l~KG~~ 76 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGN-DGRE--RNLPWYHRVSILGK-PAEWQAERNLKGGDA 76 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC----------CEEEEEEEEEEESH-HHHHHHHTCCCTTCE
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECC-CCCE--ecceEEEEEEEEcH-HHHHHHhhCCCCCCE
Confidence 44 7999999999999999999999999999999999988876 4764 46799999999999 99999999 999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGES 166 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~ 166 (180)
|+|+|+|+++.|+++ +|++++.++|+|+ +|+||++++.
T Consensus 77 V~VeG~L~~r~~~dk-dG~~r~~~ev~a~---~i~~l~~~~~ 114 (301)
T 1se8_A 77 VVVEGTLEYRQWEAP-EGGKRSAVNVKAL---RMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEEEEEC------CEEEEEEEEE---EEEECSSCCC
T ss_pred EEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEeecccc
Confidence 999999999999998 9999999999999 9999998764
No 19
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.95 E-value=1.7e-27 Score=200.80 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=94.4
Q ss_pred CCCCCccc-ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHh
Q 030281 40 DPRRGWGF-RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQ 118 (180)
Q Consensus 40 ~~~~~~~m-~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~ 118 (180)
|...+-.| ++||+|+|+|||++||++|++++|+.+++|+||++++|+ |++ ...++||+|++||+ +|+.++ +
T Consensus 117 d~~g~~~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~----g~~--~~~t~~~~v~~wg~-~Ae~~~-~ 188 (264)
T 2fxq_A 117 DARGQPRLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR----GQE--EERTHFLEVQAWRE-LAEWAS-E 188 (264)
T ss_dssp --------CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------------EEEEEEEEEHH-HHHHHT-T
T ss_pred ccccccccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC----CCC--ccccEEEEEEEECh-HHHHhh-h
Confidence 34444345 489999999999999999999999999999999999876 333 46799999999999 999999 9
Q ss_pred cCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCCC
Q 030281 119 LVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESIS 168 (180)
Q Consensus 119 l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~~ 168 (180)
|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||.+++..+
T Consensus 189 l~KG~~V~V~G~l~~~~~~~~-dG~~~~~~ev~a~---~i~~l~~~~~~~ 234 (264)
T 2fxq_A 189 LRKGDGLLVIGRLVNDSWTSS-SGERRFQTRVEAL---RLERPTRGPAQA 234 (264)
T ss_dssp CCTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEECCCC-----
T ss_pred cCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEECccccccc
Confidence 999999999999999999998 9999999999999 999999876543
No 20
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.94 E-value=4.6e-27 Score=198.20 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=97.7
Q ss_pred cccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchh--HHHHHHhcCCCCe
Q 030281 47 FRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL--GSYAVKQLVKNSS 124 (180)
Q Consensus 47 m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~--Ae~~~~~l~KG~~ 124 (180)
|++||+|+|+||| +||++|+++ |+++++|+||+++.|++++.++. ...|+||+|++||+ + |+ ++++|+||++
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~--~~~Tdw~~Vv~wgk-~~~AE-i~~~L~KG~~ 216 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEV--VVEKDHHTIRCFGE-LFSAE-VKQKVKEGNV 216 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSC--EEEEEEEEEEEESH-HHHHH-HHHHCCTTCE
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceE--ccceEEEEEEEECC-ccHHH-HHhhCCCCCE
Confidence 8999999999999 999999999 99999999999999887643321 34899999999999 8 99 8999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEE-EEEE-eCCceEEecC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPE-ICIR-RDGTLRLVKS 163 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~e-I~v~-~~g~i~~l~~ 163 (180)
|+|+|+|+++.|+|+ +|+++|.++ |.|. ..|.+++|+.
T Consensus 217 V~VeGrL~tr~~~D~-~G~kr~~~~vI~V~~~~g~v~~l~~ 256 (257)
T 4dni_A 217 VCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIHG 256 (257)
T ss_dssp EEEEEEEEEEEEECS-SSSCEEEEEEEEECTTTCEEEECCC
T ss_pred EEEEEEEEeeeEEcC-CCCEEEEEEEEEEECCCCEEEEecC
Confidence 999999999999999 899988777 5665 4889999864
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.94 E-value=2.1e-27 Score=200.30 Aligned_cols=110 Identities=16% Similarity=0.308 Sum_probs=92.6
Q ss_pred cc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeE
Q 030281 47 FR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 125 (180)
Q Consensus 47 m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V 125 (180)
|+ +||+|+|+|||++||++|++++|..+++|+||+++.|++++ |++ ...++||+|++||+ +|+.++++|+||++|
T Consensus 1 M~~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~-G~~--~~~t~~~~v~~~g~-~Ae~~~~~l~KG~~V 76 (264)
T 2fxq_A 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDES-GQE--REVPWYHRVRLLGR-QAEMWGDLLEKGQLI 76 (264)
T ss_dssp --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTT-SCE--EEEEEEEEEEEETH-HHHHHTTTCCTTCEE
T ss_pred CCCceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCC-CCE--ecccEEEEEEEEch-HHHHHHHhCCCCCEE
Confidence 44 69999999999999999999999999999999999998764 765 45799999999999 999999999999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCC
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 165 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~ 165 (180)
+|+|+|+++.|++ +|++++.++|+|+ +|++|+++.
T Consensus 77 ~V~G~L~~~~~~~--dG~~r~~~ev~a~---~i~~l~~~~ 111 (264)
T 2fxq_A 77 FVEGRLEYRQWEK--DGEKKSEVQVRAE---FIDPLEGRG 111 (264)
T ss_dssp EEEEEEEEC-----------CCEEEEEE---EEEECCCC-
T ss_pred EEEEEEEeeeEEe--CCEEEEEEEEEEE---EEEECcCCc
Confidence 9999999999997 8999999999999 999999876
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.94 E-value=6.8e-27 Score=201.11 Aligned_cols=120 Identities=17% Similarity=0.316 Sum_probs=100.5
Q ss_pred CCCCCCcccc-cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHH
Q 030281 39 VDPRRGWGFR-GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVK 117 (180)
Q Consensus 39 ~~~~~~~~m~-~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~ 117 (180)
.|..-+.-|. +||+|+|+|||++||++|++++|+.+++|+||+++.|++++ |++ ...++||+|++||+ +|+.+.+
T Consensus 117 ~d~~gg~rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~-Ge~--~~~t~~i~vvawg~-~Ae~~~~ 192 (301)
T 1se8_A 117 QDAGGGVRMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQR--QEKVHYIDATLWRD-LAENMKE 192 (301)
T ss_dssp ECTTSCEEEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCE--EEEEEEEEEEEETH-HHHHHTT
T ss_pred cccccccchhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC-CCc--ccccEEEEEEECCH-HHHHHHh
Confidence 3445566676 79999999999999999999999999999999999988774 765 45799999999999 9999999
Q ss_pred hcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCC
Q 030281 118 QLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 167 (180)
Q Consensus 118 ~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~ 167 (180)
|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||.++...
T Consensus 193 -l~KG~~V~V~GrL~~~~y~dk-dG~~r~~~ev~a~---~i~~l~~k~~~ 237 (301)
T 1se8_A 193 -LRKGDPVMIMGRLVNEGWTDK-DGNKRNSTRVEAT---RVEALARGAGN 237 (301)
T ss_dssp -CCTTCEEEEEEEEEEEECC-------CEEEEEEEE---EEEECCC----
T ss_pred -cCCCCEEEEEEEEeeeeEECC-CCcEEEEEEEEEE---EEEEeccCCCC
Confidence 999999999999999999998 9999999999999 99999987653
No 23
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.94 E-value=4.1e-27 Score=173.63 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=78.7
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 128 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve 128 (180)
|||+|+|+|||++||++|++++|.++++|+||++. .... ++-. ...+.||+|++||+ +|+.+.+||+||++|+|+
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~-~~~~-~~~~--r~~~~~~~vv~~g~-~Ae~~~~~l~KG~~V~V~ 75 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRS-VQEE-AGFH--RQAWCQMPVIVSGH-ENQAITHSITVGSRITVQ 75 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-EEEE-TTEE--EEEEEEEEEEEESS-TTHHHHTTCCTTCEEEEE
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeC-cccc-CCce--eceeEEEEEEEEhH-HHHHHHhhCCCCCEEEEE
Confidence 58999999999999999999999999999999953 2211 1110 12344499999999 999999999999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
|+|+++ +++ +|+++ ++|+|+ +|++|+++
T Consensus 76 G~L~~~--~~~-~G~~r--~~v~~~---~i~~l~~~ 103 (104)
T 1txy_A 76 GFISCH--KAK-NGLSK--MVLHAE---QIELIDSG 103 (104)
T ss_dssp EEEEC-----------C--CEEEEE---EEEEC---
T ss_pred EEEEec--cCC-CCCEE--EEEEEE---EEEECcCC
Confidence 999999 677 89987 999999 99999865
No 24
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.92 E-value=1e-25 Score=166.44 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=83.5
Q ss_pred cccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 45 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 45 ~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
.+|.++|+|+|+|||++||++|+|++|.++++|+||+++.+. . +|++ .+.+.||+|++||+ +|+ +.+ |+||++
T Consensus 2 ~~m~m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~-~-~g~~--~~~~~~i~vv~~gk-~Ae-~~~-l~KG~~ 74 (103)
T 3k8a_A 2 SHMGFTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQE-E-NGQQ--CLVQLEIPARILGR-QAE-EWQ-YRQGDC 74 (103)
T ss_dssp --CCCCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEE-E-TTEE--EEEEEEEEEEEEHH-HHH-HST-TCTTCE
T ss_pred CccccccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCc-c-CCCE--EEeeEEEEEEEEhH-Hhh-hhc-cCCCCE
Confidence 357766999999999999999999999999999999987665 3 4654 34455699999999 999 654 999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEec
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 162 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~ 162 (180)
|+|+|+|++++|.. . .+.+.++ +|++++
T Consensus 75 v~veGrL~~rs~~~----~---~lvlhi~---~i~~i~ 102 (103)
T 3k8a_A 75 ATVEGFLAQKSRRS----L---MPMLRIQ---NIKEYK 102 (103)
T ss_dssp EEEEEEEEESSSSC----C---CEEEEEE---EEEECC
T ss_pred EEEEEEEEECccCC----c---cEEEEEE---EEEEcC
Confidence 99999999999942 2 6777777 788773
No 25
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=2.5e-25 Score=165.37 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=79.4
Q ss_pred ccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEEE
Q 030281 50 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 129 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeG 129 (180)
-|+|+|+|||++||+++++++|..+++|+||+++.+ ..++||+|++|++ +|+.+. +.||++|+|+|
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~-----------~~~Dfi~ivvw~k-lAe~~~--~~kG~~v~v~G 76 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS-----------ETKDYLPITISNR-LFEGMN--LEVGTRVKIEG 76 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT-----------SCEEEEEEEEEGG-GSTTCC--CCTTCEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC-----------CCCcEEEEEEEhH-HhhHHh--hcCCCEEEEEE
Confidence 399999999999999999999999999999998742 3678999999999 999775 45999999999
Q ss_pred EeEE-eeeecCCCCeEEEEEEEEEEeCCceEEec
Q 030281 130 DIEI-RVYNDSINGEVKNIPEICIRRDGTLRLVK 162 (180)
Q Consensus 130 rL~~-~~y~d~~dG~~~~~~eI~v~~~g~i~~l~ 162 (180)
+|++ +.|+++ +|++++.++|+|+ +|+||+
T Consensus 77 ~lrsy~~~~~~-dG~~R~v~eV~a~---~i~fld 106 (107)
T 4gs3_A 77 QLRSYNRKSPE-EGKNKLILTVFAR---DISVVP 106 (107)
T ss_dssp EEEEEECC---------EEEEEEEE---EEEEEC
T ss_pred EEEecceEECC-CCCEEEEEEEEEE---EEEEcc
Confidence 9996 788888 9999999999999 999986
No 26
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.92 E-value=2.7e-25 Score=167.18 Aligned_cols=102 Identities=7% Similarity=0.014 Sum_probs=87.1
Q ss_pred ccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEEE
Q 030281 50 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 129 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeG 129 (180)
||+|+|+|||++||++|+|++|.++|+|+||+++.+ +. .|.. .....||+|++||+ +|+.+ +||+||++|+|+|
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~-~~-~g~~--r~~~~~i~vv~~Gk-~AE~~-~~l~kGs~V~VeG 74 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEV-VE-AGHP--RRVELTISAVALGD-LALLL-ADTPLGTEMQVQG 74 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEC-CC-CC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEE
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEccee-ec-CCCe--eeeeEEEEEEEEhH-HHHhh-hccCCCCEEEEEE
Confidence 799999999999999999999999999999997543 33 2443 34566699999998 99997 9999999999999
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCC
Q 030281 130 DIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESI 167 (180)
Q Consensus 130 rL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~ 167 (180)
+|++++ + +| +.++|.|+ +|++|+++...
T Consensus 75 rL~trs---~-~G---~kl~l~a~---~Ie~l~~~~~~ 102 (115)
T 3fhw_A 75 FLAPAR---K-DS---VKVKLHLQ---QARRIAGSMGR 102 (115)
T ss_dssp EEEESS---T-TC---SSEEEEEE---EEEECCCSCCC
T ss_pred EEEECC---C-CC---CEEEEEEE---EEEEcCCCCCC
Confidence 999995 4 68 57899999 99999877553
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.87 E-value=1.5e-22 Score=149.07 Aligned_cols=84 Identities=6% Similarity=0.026 Sum_probs=69.6
Q ss_pred ccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEEE
Q 030281 50 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 129 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeG 129 (180)
||+|+|+|+|++||++|+||+|.++++|+||+++.+... |.. .+...||+|++||+ +||.+.+ ++||++|.|+|
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~--g~~--r~~~f~i~vv~wGk-~AE~~~~-~~kGs~V~VeG 75 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEA--QAA--RQVEFSIEALGAGK-MASVLDR-IAPGTVLECVG 75 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC----E--EEEEEEEEEEEETH-HHHHHTT-SCTTCEEEEEE
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecC--CCc--EeeeEEEEEEEEhH-HHHHHhh-cCCCCEEEEEE
Confidence 899999999999999999999999999999998765432 432 34566699999998 9999886 78999999999
Q ss_pred EeEEeeeecC
Q 030281 130 DIEIRVYNDS 139 (180)
Q Consensus 130 rL~~~~y~d~ 139 (180)
+|++++|..+
T Consensus 76 rL~trs~~s~ 85 (101)
T 3en2_A 76 FLARKHRSSK 85 (101)
T ss_dssp EEEECC----
T ss_pred EEEeCcCCCC
Confidence 9999999865
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.85 E-value=1.7e-20 Score=146.03 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred cccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 45 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 45 ~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
|. +.+|+|+|+|||+ ||+.+++. +..++.|+||+++.++. .|+ ..++||+|.+||.++|+.+.++|+||++
T Consensus 40 h~-r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r--~ge----~~tdf~~V~vfGg~lAE~i~~ylkkG~r 110 (148)
T 3stb_C 40 HW-RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSDYSSRVKEQLRDGEW 110 (148)
T ss_dssp CC-SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCC--TTS----CSEEEEEEEECSHHHHHHHHHHCCTTCE
T ss_pred hh-eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCC--CCC----CccceEEEEEECChHHHHHHHHhcCCCE
Confidence 44 6799999999996 89989984 78999999999987653 244 4899999999974499999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEE
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEIC 151 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~ 151 (180)
|+|+|||+++.|+|+ +|++.|.+.++
T Consensus 111 VlVeGRLrmn~~~d~-~gkk~Y~~p~i 136 (148)
T 3stb_C 111 FLVTGRLRMVPQYDG-SMRKYYHYPVI 136 (148)
T ss_dssp EEEEEEEEEEEEEET-TTTEEEEEEEE
T ss_pred EEEEEEEEcceeECC-CCCEEeeccEE
Confidence 999999999999999 99998877644
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.83 E-value=1.4e-20 Score=158.61 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=85.4
Q ss_pred cccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecC-chhHHHHHHhcCCCC
Q 030281 45 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN-EILGSYAVKQLVKNS 123 (180)
Q Consensus 45 ~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~g-k~~Ae~~~~~l~KG~ 123 (180)
|. ++||+|+|+|||++| ++|+|++|. ++.|++++...+.. .|+ ..++|+.|++|| + +||.+.+||+||+
T Consensus 26 ~~-r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~--~ge----~~~df~~vv~wg~k-~AE~~~~yl~kG~ 95 (257)
T 4dni_A 26 HW-RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPS--PGD----PDKDFHTVRVFDSD-YSSRVKEQLRDGE 95 (257)
T ss_dssp TS-CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCC--SSC----CCEEEEEEEECSHH-HHHHHHHHCCTTC
T ss_pred hh-hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCC--CCC----CcccEEEEEEECCH-HHHHHHHhccCCC
Confidence 45 789999999999999 999999984 66777777765442 354 367788888999 7 9999999999999
Q ss_pred eEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEE
Q 030281 124 SVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRL 160 (180)
Q Consensus 124 ~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~ 160 (180)
+|+|+|||++ |+++ +|++++.++|.++ ++..
T Consensus 96 ~V~VeGrL~~--~~~~-dG~kr~~~evva~---~v~~ 126 (257)
T 4dni_A 96 WFLVTGRLRM--VPQY-DGSMRKYYHYPVI---QVHP 126 (257)
T ss_dssp EEEEEEEEEE--EEEE-CSSSSSEEEEEEE---EECT
T ss_pred EEEEEEEEEE--eECC-CCCcEEEEEEEEE---EEEe
Confidence 9999999999 7887 9999999999999 4544
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.71 E-value=0.00078 Score=49.08 Aligned_cols=95 Identities=20% Similarity=0.228 Sum_probs=61.6
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhH--HHHHHhcCCCCeEEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG--SYAVKQLVKNSSVYVEG 129 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~A--e~~~~~l~KG~~V~VeG 129 (180)
+++|+|+|-. -..-+ =-...++-|+|.+... + ....++|.|-+||. .+ +.+.+.|+-|+.|+|.|
T Consensus 5 n~vlvG~V~D-VQ~Gf-l~~~~V~Qftl~~d~e------~----~~eke~~tVRC~Gd-~~~~~~lk~~lk~g~~v~V~G 71 (105)
T 4dka_C 5 NALMIGRIAD-VQHGF-LGAMTVTQYVLEVDGG------A----SGEKEFIVIRCMGD-NFPASLLKDQVKLGSRVLVQG 71 (105)
T ss_dssp EEEEEEEEEE-EEEEE-ETTEEEEEEEEEECC--------------CCEEEEEEEECC----------CCCTTCEEEEEE
T ss_pred ceEEEEEEEE-eeecc-cccceEEEEEEEEeCC------C----CCcccEEEEEEcCc-cchHHHHHHHHhCCCEEEEEe
Confidence 5889999865 22211 1347899999999542 1 13667999999999 55 77899999999999999
Q ss_pred EeEEeeeecCCCCeEE--EEEEEEEEe-CCceEEe
Q 030281 130 DIEIRVYNDSINGEVK--NIPEICIRR-DGTLRLV 161 (180)
Q Consensus 130 rL~~~~y~d~~dG~~~--~~~eI~v~~-~g~i~~l 161 (180)
+||+..--|. +.++ ..+-|.|.. -|.+..|
T Consensus 72 rLRm~p~~d~--~~kkyy~yP~IqV~pp~G~v~Vi 104 (105)
T 4dka_C 72 TLRMNRHVDD--VSKRLHAYPFIQVVPPLGYVKVV 104 (105)
T ss_dssp EEECCCEECT--TTCSEECCCEEEEC--CCEEEEC
T ss_pred EEEeeecccc--ccceeccCCEEEEECCCcEEEec
Confidence 9999887774 4444 456677763 5555544
No 31
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.01 Score=42.94 Aligned_cols=84 Identities=19% Similarity=0.116 Sum_probs=57.9
Q ss_pred cEEEEEEEeCCCCeEEEe--cCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEE
Q 030281 51 HKAIICGKVKDTPVQKIL--RNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 128 (180)
Q Consensus 51 N~v~L~Grlg~dPe~r~t--~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve 128 (180)
+.+.+.|+|..-.+.+.. .+|+....+++... |. +| -+++++|++ .|.. .+.+|+.|.|.
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----D~-TG---------~IrvtlW~~-~a~~---~l~~Gdvv~i~ 76 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----DE-TG---------SIRVTLWDN-LTDI---DVGRGDYVRVR 76 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----ET-TE---------EEEEEEEGG-GGGS---CCCTTCEEEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----CC-CC---------cEEEEEECc-cccc---ccCCCCEEEEE
Confidence 579999999988777654 46766555555443 22 34 289999999 7764 89999999998
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEe
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 161 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l 161 (180)
|+.+... .| .++|.+.+.+.|...
T Consensus 77 g~vk~~~-----~g----~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 77 GYIREGY-----YG----GLECTANYVEILKKG 100 (105)
T ss_dssp EEEEECT-----TS----SEEEEEEEEEEEECC
T ss_pred EEEEEcc-----CC----CEEEEeCCceEEEec
Confidence 8776652 12 347777744444443
No 32
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.26 E-value=0.011 Score=41.86 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=52.9
Q ss_pred cEEEEEEEeCCCCeEEEe--cCCe--EEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 51 HKAIICGKVKDTPVQKIL--RNGK--TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 51 N~v~L~Grlg~dPe~r~t--~nG~--~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
..+.|.|+|..-...+.. ++|. .+..+.|+ |. +|. +++++|++ +|+. .++.|+.|.
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~~~~---~i~~Gdvv~ 71 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK------DD-TGS---------IRGTLWNE-LADF---EVKKGDIAE 71 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE------ET-TEE---------EEEEEEGG-GGGC---CCCTTCEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE------CC-CCc---------EEEEEECC-cccc---ccCCCCEEE
Confidence 578999999988766653 4674 45555442 32 463 89999999 6664 799999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCceE
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLR 159 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~ 159 (180)
|.|..+. |. | .++|.+.+.|.|+
T Consensus 72 i~g~v~~--~~----~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 72 VSGYVKQ--GY----S----GLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEE--C----------CEEEEEEEEEEEE
T ss_pred EEEEEEE--cC----C----eEEEEECCCcEEE
Confidence 9996633 32 2 5678887666654
No 33
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=96.13 E-value=0.074 Score=38.23 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=60.6
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeE--EEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKT--VTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~--v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
+++.+.+.|+|-.--+.+.+++|+. ++.+.|+ |+ +|. +++++|++ . +.+|+.|.
T Consensus 12 g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~------De-TG~---------I~~tlW~~-~-------l~~Gdvv~ 67 (106)
T 2k75_A 12 STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE------DD-TAR---------IRISSFGK-Q-------LQDSDVVR 67 (106)
T ss_dssp TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE------CS-SCE---------EEEEEESS-C-------CCTTEEEE
T ss_pred CCceEEEEEEEEEccccccccCCCeeEEEEEEEE------cC-CCe---------EEEEEEcC-c-------cCCCCEEE
Confidence 4567889999988777766778874 6655443 33 463 89999998 4 99999999
Q ss_pred EE-EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 127 VE-GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 127 Ve-GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
|. |..+ .|.. .++|.+.+.|.|..++.
T Consensus 68 i~ng~v~--~~~g--------~~~L~v~~~~~I~~~~~ 95 (106)
T 2k75_A 68 IDNARVA--QFNG--------YLSLSVGDSSRIESVNV 95 (106)
T ss_dssp EEEEEEE--EETT--------EEEEEECTTSEEEECCS
T ss_pred EEeeEEe--EECC--------EEEEEECCcEEEEECCC
Confidence 99 6665 4532 47888888888888763
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.87 E-value=0.073 Score=38.77 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=61.4
Q ss_pred ccEEEEEEEeCCCCeEE--EecCCe-EEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 50 VHKAIICGKVKDTPVQK--ILRNGK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r--~t~nG~-~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
.+.+.++|.|..--.++ .+++|+ .+..+.|+ |+ +|. +++++|+. .| ..+..|+.|.
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~------D~-TG~---------I~~tlW~~-~~----~~~~~G~vv~ 70 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG------DE-TGR---------VKLTLWGK-HA----GSIKEGQVVK 70 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE------ET-TEE---------EEEEEEGG-GT----TCCCTTCEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE------eC-CCE---------EEEEEECC-hh----hcCCCCCEEE
Confidence 44577888887664434 557886 66666544 22 342 89999998 55 3589999999
Q ss_pred EE-EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCCCCCChhhhhc
Q 030281 127 VE-GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESISKISFDDLRE 177 (180)
Q Consensus 127 Ve-GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~~~~~~~~~~~ 177 (180)
|. |+++ .|. | .++|.+.+.+.|..+.. ..=+..+||.+
T Consensus 71 i~~g~v~--~~~----g----~~qL~i~~~~~i~~~~~---~~~~~~~~l~~ 109 (119)
T 1o7i_A 71 IENAWTT--AFK----G----QVQLNAGSKTKIAEASE---DGFPESSQIPE 109 (119)
T ss_dssp EEEEEEE--EET----T----EEEEEECTTCEEEECCC---TTCCCGGGSCC
T ss_pred EEeEEEE--EeC----C----EEEEEECCCEEEEEcCC---cCCCcHHHhhh
Confidence 99 7665 453 3 36777877777877642 22344555543
No 35
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.86 E-value=0.034 Score=39.97 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCCeEE--EecCC--eEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEE
Q 030281 52 KAIICGKVKDTPVQK--ILRNG--KTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 127 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r--~t~nG--~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~V 127 (180)
.+.+.|.|..--.++ .+++| ..++.+.|+=. +| -+++++|+. .++. ...|+.|+.|.|
T Consensus 18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~-------TG---------~I~~t~w~~-~~~~-~~~l~~G~vv~i 79 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD-------TG---------ELRAVFWTE-NIKL-LKKFREGDVIRI 79 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET-------TE---------EEEEEEETT-GGGG-GGTCCTTSEEEE
T ss_pred EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC-------CC---------eEEEEEeCc-hhhh-hhcCCCCCEEEE
Confidence 568999999875566 45678 67777755432 34 389999998 6653 468999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEe
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 161 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l 161 (180)
.|..-...|.. . ++|.+.+.+.|.++
T Consensus 80 ~g~~v~~~f~g----~----~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 80 KDVNIRGGFGG----R----KEAHLMPRSTVEVL 105 (115)
T ss_dssp EEEEECCCSSS----S----CEEEECTTCCEEEE
T ss_pred EeeEEccccCC----e----EEEEECCCceEEEC
Confidence 99875444642 2 55666544455544
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.038 Score=40.08 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=62.1
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCe-EEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVY 126 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~-~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~ 126 (180)
.++++..|+|||..-.++|...+.. .--.|+|. ..|. +| -|++++|++ +|+.+...|+.|+.++
T Consensus 12 p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~----L~De-~G---------~I~at~~~~-~~~~f~~~l~eG~vy~ 76 (114)
T 1ynx_A 12 PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVN----FLDT-SG---------EIRATAFND-FATKFNEILQEGKVYY 76 (114)
T ss_dssp TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEE----EEET-TE---------EEEEEECHH-HHHHHHHHSCSSSEEE
T ss_pred CCCCceEEEEEEEEeccceEEecCCCCceEEEEE----EECC-CC---------eEEEEECHH-HHHHHHhhcccCcEEE
Confidence 4567788999999998888765421 22233333 2333 35 289999999 9999999999999999
Q ss_pred EEE-EeEEeeeecCCCCeEEEEEEEEEEeCCceEEe
Q 030281 127 VEG-DIEIRVYNDSINGEVKNIPEICIRRDGTLRLV 161 (180)
Q Consensus 127 VeG-rL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l 161 (180)
|.+ +++.. ..+ =......++|.......|+.+
T Consensus 77 Is~~~V~~a--~~~-y~~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 77 VSKAKLQPA--KPQ-FTNLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp EESCEEEEC--CTT-TSSSSSCEEEEECSSCEEEES
T ss_pred ECCcEEEEC--CCC-cccCCCCEEEEECCCCEEEEC
Confidence 998 33322 111 111123567777655455554
No 37
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=94.25 E-value=0.23 Score=39.97 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred cccEEEEEEEeCCCCeEEEecC-CeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRN-GKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 127 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~n-G~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~V 127 (180)
+++++.|+|||..--++|...+ +...-.|++.. .|. +| -+++++|++ .|+.+...|+.|+-++|
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L----~De-~G---------~I~at~~~~-~~~~~~~~l~~G~vy~i 81 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLEL----VDE-SG---------EIRATAFNE-QVDKFFPLIEVNKVYYF 81 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEE----ECS-SC---------EEEEEEEHH-HHHHHGGGCCTTCEEEE
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEE----ECC-CC---------eEEEEEChH-HHHHhhhhcccCCEEEE
Confidence 4567889999998887776543 11222344432 233 35 289999998 89999999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
.+ .+.+.+..+ -......++|.......|..+...
T Consensus 82 ~~-~~v~~~~~~-y~~~~~~~ei~~~~~T~I~~~~~~ 116 (246)
T 1jmc_A 82 SK-GTLKIANKQ-FTAVKNDYEMTFNNETSVMPCEDD 116 (246)
T ss_dssp EC-CEEEECCGG-GCCCCCSEEEECCTTCEEEECCSC
T ss_pred CC-CEEEEcccC-cccCCCCEEEEEcCCcEEEEccCc
Confidence 98 333333322 111223677877766677776554
No 38
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.37 E-value=1.2 Score=39.19 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=63.9
Q ss_pred ccccEEEEEEEeCCCCeEEEecC--Ce-EEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCe
Q 030281 48 RGVHKAIICGKVKDTPVQKILRN--GK-TVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSS 124 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~n--G~-~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~ 124 (180)
.++++++|.|||..--.+|...+ |. .+..|.| .|. +| -|++++|+. +|+.+...|+.|+-
T Consensus 11 p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L------~De-~G---------~I~at~~~~-~~~~f~~~l~eG~v 73 (444)
T 4gop_C 11 PYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNL------LDD-SG---------EIKATGFND-AVDRFYPLLQENHV 73 (444)
T ss_dssp TTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEE------ECS-SC---------EEEEEEETH-HHHHHTTTCCTTCE
T ss_pred CCCcceEEEEEEEEccCcceecCCCCCceEEEEEE------EcC-CC---------EEEEEEeHH-HHHHHHHheecCCE
Confidence 34567889999998777776543 32 3433332 233 35 389999999 99999999999999
Q ss_pred EEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 125 VYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 125 V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
++|.+ .+.+....+ --.....++|.......|..+..
T Consensus 74 y~Is~-~~V~~~~~~-y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 74 YLISK-ARVNIAKKQ-FSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp EEEES-CEEEECCGG-GCSCCCSEEEEECTTCEEEECSC
T ss_pred EEEcC-CEEEecCCc-cccCCCCEEEEEcCCcEEEEccC
Confidence 99998 333333221 11122357888876667777654
No 39
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=90.10 E-value=3.7 Score=40.36 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=55.8
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHH--HHHHhcCCCCeEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVY 126 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae--~~~~~l~KG~~V~ 126 (180)
.+.+|+|.|.|-. .+.|.+.||+.++.|.|. . .|+-+.|..|-+ ..+ .+.+.+++|+-|.
T Consensus 16 ~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t--d--------------~~~~~~~k~f~~-~~~~~~~~~~~~~g~~~~ 77 (1041)
T 3f2b_A 16 EERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--D--------------YTNSILVKMFSR-DKEDAELMSGVKKGMWVK 77 (1041)
T ss_dssp CEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--C--------------SSCEEEEEEECS-SHHHHHHHHTCCTTCEEE
T ss_pred ccceEEEEEEEEE-EEEEEccCCCEEEEEEEE--e--------------CCCCEEEEEeec-ccchHHHHhcCCCCCEEE
Confidence 3678999999886 788899999998877662 1 222378888865 333 3567899999999
Q ss_pred EEEEeEEeeeec
Q 030281 127 VEGDIEIRVYND 138 (180)
Q Consensus 127 VeGrL~~~~y~d 138 (180)
|.|.++...|..
T Consensus 78 ~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 78 VRGSVQNDTFVR 89 (1041)
T ss_dssp EEEEEEEETTTT
T ss_pred EEEEEEeccCCc
Confidence 999999988853
No 40
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=88.83 E-value=2.5 Score=37.32 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=50.5
Q ss_pred cccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecC--chhHHHHHHhcCCC
Q 030281 45 WGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHN--EILGSYAVKQLVKN 122 (180)
Q Consensus 45 ~~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~g--k~~Ae~~~~~l~KG 122 (180)
..+.....+.+.|.|...|.. .+.|..+..+ ... .+ -++|++|. + ....+++.|..|
T Consensus 279 ~~~~~~~~~~v~G~V~~~P~~--~~GGHV~f~l--~d~-------~~---------~i~c~ayeptk-~fr~~vr~L~~G 337 (402)
T 3au7_A 279 HRLENYRSYRLRGRVTLEPYD--IEGGHVFFEI--DTK-------FG---------SVKCAAFEPTK-QFRNVIRLLRKG 337 (402)
T ss_dssp SSCCTTCEEEEEEEEEEEEEE--ETTTEEEEEE--EET-------TE---------EEEEEECGGGT-THHHHHTTCCTT
T ss_pred cccccCceEEEEEEEecCcEe--ccCceEEEEE--EcC-------CC---------EEEEEEEccch-HHHHHHhcCCCC
Confidence 345567789999999998874 4577766433 221 12 38999999 4 467789999999
Q ss_pred CeEEEEEEeEE
Q 030281 123 SSVYVEGDIEI 133 (180)
Q Consensus 123 ~~V~VeGrL~~ 133 (180)
|.|.|-|.++.
T Consensus 338 D~V~v~G~v~~ 348 (402)
T 3au7_A 338 DVVEVYGSMKK 348 (402)
T ss_dssp CEEEEEEEEET
T ss_pred CEEEEEEeecC
Confidence 99999999543
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=88.26 E-value=3.9 Score=29.83 Aligned_cols=79 Identities=9% Similarity=0.192 Sum_probs=48.9
Q ss_pred ccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHH--HHHHhcCCCCeEEE
Q 030281 50 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVYV 127 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae--~~~~~l~KG~~V~V 127 (180)
++.|.|+|.|-.-- ....++.|+| .|. +|. -+.|..|.. ... .-...+..|+-|.|
T Consensus 31 i~~V~iVG~V~~~~------~~~~~~~~~l------dD~-TG~--------~I~~~~W~~-~~~~~~~~~~~~~g~yVrV 88 (132)
T 3kdf_D 31 ISQVTIVGIIRHAE------KAPTNIVYKI------DDM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVKV 88 (132)
T ss_dssp CCEEEEEEEEEEEE------ECSSEEEEEE------ECS-SSS--------CEEEEEEC----------CCCCTTCEEEE
T ss_pred EEEEEEEEEEEEEE------EcCCeEEEEE------ECC-CCC--------EEEEEEEcc-CCCcccccccccCCCEEEE
Confidence 78999999987631 2345666644 233 462 278889976 322 12567999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
.|+++. |. |+ ..|.+. .|+++..
T Consensus 89 ~G~l~~--f~----g~----~qi~~~---~ir~v~d 111 (132)
T 3kdf_D 89 AGHLRS--FQ----NK----KSLVAF---KIMPLED 111 (132)
T ss_dssp EEEEEE--ET----TE----EEEEEE---EEEECSS
T ss_pred EEEEEe--EC----CE----EEEEEE---EEEEcCC
Confidence 999887 53 33 345555 5666643
No 42
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=85.78 E-value=7.5 Score=27.50 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=56.8
Q ss_pred ccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEE
Q 030281 48 RGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYV 127 (180)
Q Consensus 48 ~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~V 127 (180)
-|+|.|.|.|-|-.- +-+.+ +.-.-.+|...+.| |+. .-|+|+-+-+-++ +|=.+.+|.+|=..+.|
T Consensus 6 gMLN~V~LEG~IeS~---kWS~k-KTGF~VTIkQkR~F-----Ger---~FTDyyViYAN~Q-L~~ELEky~~k~k~isi 72 (110)
T 2hql_A 6 GMLNRVFLEGEIESS---CWSVK-KTGFLVTIKQMRFF-----GER---LFTDYYVIYANGQ-LAYELEKHTKKYKTISI 72 (110)
T ss_dssp -CCEEEEEEEEEEEE---EECTT-CSEEEEEEEEEEEE-----TTE---EEEEEEEEEEEHH-HHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEeeeeehh---ccccc-CceEEEEEeehhhh-----ccc---cceeEEEEEECCe-eehhHHHhhhhceEEEE
Confidence 468999999988542 12222 22222334444433 442 5788988888887 99899999999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEE
Q 030281 128 EGDIEIRVYNDSINGEVKNIP 148 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~ 148 (180)
+|.|++.. ++..+.-++..
T Consensus 73 eG~L~TY~--ekkS~iWKTtI 91 (110)
T 2hql_A 73 EGILRTYL--ERKSEIWKTTI 91 (110)
T ss_dssp EEEEEEEE--ETTTTEEEEEE
T ss_pred eeehhhHH--HHhcccceeEE
Confidence 99998754 43256544433
No 43
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.95 E-value=2.1 Score=31.53 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=50.8
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHH---HHHhcCCCCeE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSY---AVKQLVKNSSV 125 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~---~~~~l~KG~~V 125 (180)
.++.|.|+|.|-.- ..+..++.|+|. |. +|. +.|..|.. ..+. -...+..|+-|
T Consensus 35 ~i~~V~iVG~V~~~------~~~~~~~~~~ld------D~-TG~---------I~~~~W~~-~~~~~~~~~~~~~~g~yV 91 (136)
T 4gop_B 35 ELGQLTFVAVVRNI------SRNATNVAYSVE------DG-TGQ---------IEVRQWLD-SSSDDSSKASEIRNNVYV 91 (136)
T ss_dssp BCCEEEEEEEEEEE------EECSSEEEEEEE------CS-SCE---------EEEEEECC---------CCSCCTTCEE
T ss_pred EEEEEEEEEEEEEE------EecCCeEEEEEE------CC-CCC---------EEEEEecc-cCCcccccccccCCCCEE
Confidence 48899999998763 234567777553 33 453 89999986 3321 25679999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEec
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 162 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~ 162 (180)
.|.|+++. |. |+ ..|.+. .|+++.
T Consensus 92 rV~G~v~~--f~----g~----~qi~~~---~ir~v~ 115 (136)
T 4gop_B 92 RVLGTLKS--FQ----NR----RSISSG---HMRPVI 115 (136)
T ss_dssp EEEEEEEE--ET----TE----EEEEES---EEEECS
T ss_pred EEEEEEEE--eC----CE----EEEEEE---EEEECC
Confidence 99999976 53 33 345555 566553
No 44
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=84.03 E-value=1.3 Score=36.69 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=39.2
Q ss_pred ceEEEEEecCchhHHHHHHhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCCCCCCCChh
Q 030281 99 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGESISKISFD 173 (180)
Q Consensus 99 t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~~~~~~~~~ 173 (180)
+.-+.|.+.+. +...++.||+|.|.|-++... . .+...+.+.|.|. .|+..+.+.+....+.+
T Consensus 197 Prsi~V~l~~d-----Lvd~~~PGDrV~vtGI~~~~~-~---~~~~~~~~~l~a~---~I~~~~~~~~~~~~t~e 259 (279)
T 1ltl_A 197 PRQITVVLEDD-----LVDTLTPGDIVRVTGTLRTVR-D---ERTKRFKNFIYGN---YTEFLEQEFEELQISEE 259 (279)
T ss_dssp CCEEEEEEEGG-----GTTCCCTTCEEEEEEEEEEEE-E---TTTTEEEEEEEEE---ECCBC------------
T ss_pred CeEEEEEEccc-----ccCccCCCCEEEEEEEEEEee-C---CCCceEEEEEEEE---EEEEecCccccCCCCHH
Confidence 45677888877 567899999999999998774 2 3444678888888 77776555443334433
No 45
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=82.69 E-value=6 Score=32.46 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=40.4
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHH--HHHHhcCCCCeEE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS--YAVKQLVKNSSVY 126 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae--~~~~~l~KG~~V~ 126 (180)
-++.|.|+|.|-.- ..+..++.|+| .|. +|. -|.|.+|.. ..+ .-...++.|+-|.
T Consensus 70 ~i~~V~ivG~V~~i------~~~~~~~~~~L------~D~-TG~--------~I~~k~W~~-~~~~~~~~~~~~~G~yVr 127 (270)
T 2pi2_A 70 EISQVTIVGIIRHA------EKAPTNIVYKI------DDM-TAA--------PMDVRQWVD-TDDTSSENTVVPPETYVK 127 (270)
T ss_dssp EESEEEEEEEEEEE------EECSSEEEEEE------ECS-SSS--------CEEEEEECC--------CCCCCTTCEEE
T ss_pred EEEEEEEEEEEEEE------EeccceEEEEE------ECC-CCC--------EEEEEEEcC-cCcccchhhcCCCCCEEE
Confidence 36788888887652 12346666644 233 451 278999976 322 1245799999999
Q ss_pred EEEEeEE
Q 030281 127 VEGDIEI 133 (180)
Q Consensus 127 VeGrL~~ 133 (180)
|.|+++.
T Consensus 128 V~G~v~~ 134 (270)
T 2pi2_A 128 VAGHLRS 134 (270)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999885
No 46
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=82.40 E-value=11 Score=26.66 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=53.0
Q ss_pred ccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEE-
Q 030281 50 VHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE- 128 (180)
Q Consensus 50 mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve- 128 (180)
...+.+.|+|-..-+ ..++..+..+. ..|. +|. +++++|+.. .+..++.|+.|.|.
T Consensus 15 ~~~v~v~~~V~~~~~---~~~~~~~~~~~------l~De-TG~---------I~~t~W~~~----~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 15 GQWANLKAKVIQLWE---NTHESISQVGL------LGDE-TGI---------IKFTIWKNA----ELPLLEQGESYLLRS 71 (109)
T ss_dssp TCEEEEEEEEEEEEE---CCCSSEEEEEE------EECT-TCC---------EEEEEEGGG----CCCCCCTTCEEEEEE
T ss_pred CCcEEEEEEEEEeEc---CCCCeEEEEEE------EECC-CCe---------EEEEEECcc----cccccCCCCEEEEEE
Confidence 456788888876433 23455554432 2233 464 899999952 24589999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
|..+. |.. .++|.+.+.+.|..++.
T Consensus 72 ~~v~~--~~G--------~~~L~v~~~~~I~~~~~ 96 (109)
T 2kbn_A 72 VVVGE--YND--------RFQVQVNKNSSIEKLSE 96 (109)
T ss_dssp EEEEE--ETT--------EEEEEECSSSEEEECSS
T ss_pred EEEEE--ECC--------EEEEEECCceEEEECCC
Confidence 66655 542 46777776667777653
No 47
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=81.25 E-value=3.6 Score=33.55 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=41.5
Q ss_pred ceEEEEEecCchhHHHHHHhcCCCCeEEEEEEeEEeeee--cCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 99 VQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYN--DSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 99 t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeGrL~~~~y~--d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
+.-+.|.+.+. +.+.++.||+|.|.|-++..... .+ .+...+.+.|.|. .|+.+..
T Consensus 210 Prsi~v~l~~d-----Lvd~~~PGDrV~vtGI~~~~~~~~~~~-~~~~~~~~yl~an---~I~~~~~ 267 (268)
T 2vl6_A 210 PRQLEIILEDD-----LVDSARPGDRVKVTGILDIKQDSPVKR-GSRAVFDIYMKVS---SIEVSQK 267 (268)
T ss_dssp CCEEEEEEEGG-----GTTSSCTTCEEEEEEEEEEECSSTTCC-SSCCEEEEEEEEE---EEEEC--
T ss_pred CcEEEEEEccC-----ccCcccCCCEEEEEEEEEEeecccccC-CCceEEEEEEEEE---EEEEecc
Confidence 45677888777 56789999999999999887654 22 3455788888888 7887753
No 48
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=72.96 E-value=13 Score=28.02 Aligned_cols=48 Identities=8% Similarity=0.164 Sum_probs=36.9
Q ss_pred EEEEecCchhHHHHHHhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 102 HRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 102 ~~V~~~gk~~Ae~~~~~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
+++++|++ +++ .++.|+.|.|.+-.- +.|. | .++|.+.+.|.|..++.
T Consensus 75 I~ftlW~e-~~~----~l~~Gd~v~i~na~v-~~~~----G----~~~L~vgk~g~Ie~~~e 122 (145)
T 1wjj_A 75 ILFTARND-QVD----LMKPGATVILRNSRI-DMFK----G----TMRLGVDKWGRIEATGA 122 (145)
T ss_dssp EEEEECTT-HHH----HTCTTCEEEEEEEEE-EEET----T----EEEEEECTTCCBCCCSC
T ss_pred EEEEEecC-CcC----cCCCCCEEEEeccEE-EeEC----C----EEEEEECCCEEEEECCC
Confidence 89999998 665 488999999987433 2464 3 48899998889988764
No 49
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=68.77 E-value=6.1 Score=39.51 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=28.8
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEEEEe
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDI 131 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeGrL 131 (180)
.+.+.|-|.. -..+.|++|+.++.++|.- . +|. +.|++|.+ .-+.....|..+..|+|.|++
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD------~-tg~---------~evvvf~~-~~~~~~~~l~~~~~~~v~G~v 1105 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD------E-TGA---------LEVVVFGR-AYEGVSPKLKEDIPLLVLAEV 1105 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE------T-TEE---------EEEC--------------CTTCEEEEEEEE
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE------C-CCC---------EEEEEcHH-HHHHHHHHhccCCEEEEEEEE
Confidence 4778887776 4445677888877776543 2 243 79999999 777778899999999999999
Q ss_pred EE
Q 030281 132 EI 133 (180)
Q Consensus 132 ~~ 133 (180)
+.
T Consensus 1106 ~~ 1107 (1220)
T 2hpi_A 1106 EK 1107 (1220)
T ss_dssp C-
T ss_pred EE
Confidence 74
No 50
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=59.92 E-value=54 Score=24.84 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=50.4
Q ss_pred cccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchh-H--HHHHHhcCCCCeE
Q 030281 49 GVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL-G--SYAVKQLVKNSSV 125 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~-A--e~~~~~l~KG~~V 125 (180)
-++.|.|+|.|..--+ .+ . .+.|+ .+|. +|. -+.|.+|-+ . + ..+...+..|+.|
T Consensus 46 PI~~V~IvGiVv~~~~---~~-~--~~~yt------IDD~-TG~--------~I~cv~w~~-~~~~~~~~~~~l~~G~~V 103 (159)
T 3kf6_A 46 PIRWIQIVGYIAAIDI---YE-G--KHVLT------VDDC-SGM--------VLRVVFIIQ-DDFSMSKRAISMSPGNVV 103 (159)
T ss_dssp EECEEEEEEEEEEEEE---ET-T--EEEEE------EECS-SSC--------EEEEEEEGG-GCHHHHHHHTTCCTTCEE
T ss_pred EEEEEEEEEEEEEEEE---eC-C--EEEEE------EecC-CCC--------eEEEEEEcc-CCCCcccccccCCCCCEE
Confidence 4789999999987322 11 1 12221 2332 453 489999987 4 2 2344458899999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecC
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKS 163 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~ 163 (180)
-|.|.|++ |.+ + .+|.+. ++..++.
T Consensus 104 rV~G~v~~--fr~----~----rqI~~~---~i~~v~d 128 (159)
T 3kf6_A 104 CVFGKINS--FRS----E----VELIAQ---SFEELRD 128 (159)
T ss_dssp EEEEEEEC--SSS----S----CEEEEE---EEEEECS
T ss_pred EEEEEEEe--eCC----E----EEEEEE---EEEECCC
Confidence 99999976 432 1 356676 6777754
No 51
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=59.19 E-value=12 Score=24.89 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=26.1
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
|.-+.|.|+|. +|.-+.-.+++.=.+|+|++....
T Consensus 1 ~p~k~RtWtDr-tG~F~VeA~flg~~dgki~LhK~n 35 (68)
T 2hbp_A 1 GSKKSRLWVDR-SGTFKVDAEFIGCAKGKIHLHKAN 35 (68)
T ss_dssp --CCSEEEEBS-SSCCEEEEEEEEEETTEEEEECTT
T ss_pred CCccccEEEcC-CCCeEEEEEEEEEeCCEEEEEecC
Confidence 44578999999 998777777666568999997644
No 52
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=54.57 E-value=30 Score=27.22 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=40.7
Q ss_pred EEEEEEEeCCCCeEEEe--c-CCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEE
Q 030281 52 KAIICGKVKDTPVQKIL--R-NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVE 128 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t--~-nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve 128 (180)
-+-++|.|..--.++.. . +|+......+... |. +|. -++|++||+ .|+.+. ...|.-|.+.
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~----D~-sg~--------~i~~tLWg~-~a~~~~--~~~~~vv~i~ 203 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLM----DT-SGK--------VVTATLWGE-DADKFD--GSRQPVLAIK 203 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE----CT-TCC--------EEEEEEEHH-HHHHCC--CTTCCEEEEE
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE----CC-CCC--------EEEEEEEch-hhhhcc--cCCCCEEEEE
Confidence 47788888765444332 2 5766554444332 22 243 389999999 888643 5677766655
Q ss_pred EEeEEeee
Q 030281 129 GDIEIRVY 136 (180)
Q Consensus 129 GrL~~~~y 136 (180)
| .+...|
T Consensus 204 ~-~~v~~f 210 (246)
T 1jmc_A 204 G-ARVSDF 210 (246)
T ss_dssp E-EEEECT
T ss_pred E-EEEEec
Confidence 5 344555
No 53
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=53.13 E-value=40 Score=24.11 Aligned_cols=76 Identities=14% Similarity=0.322 Sum_probs=48.7
Q ss_pred ccccccEEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeE
Q 030281 46 GFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSV 125 (180)
Q Consensus 46 ~m~~mN~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V 125 (180)
.|..=..|+|.|+|.+-. . +..| .|+|. +|+ |.|.+=.+ ...-..+..+++|
T Consensus 33 ~~~Dd~~V~L~G~Iv~~~-----~-~d~Y---------~F~D~-TG~---------I~VeId~~---~w~g~~v~p~~~V 84 (109)
T 1nnx_A 33 SLRDDTWVTLRGNIVERI-----S-DDLY---------VFKDA-SGT---------INVDIDHK---RWNGVTVTPKDTV 84 (109)
T ss_dssp TSCSSEEEEEEEEEEEEE-----E-TTEE---------EEEET-TEE---------EEEECCGG---GSTTCCCCTTSCE
T ss_pred hCcCCCeEEEEEEEEEEe-----C-CCeE---------EEECC-Ccc---------EEEEEChh---hcCCcccCCCCEE
Confidence 345556899999997632 1 2333 26665 464 67765333 1223578999999
Q ss_pred EEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEec
Q 030281 126 YVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVK 162 (180)
Q Consensus 126 ~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~ 162 (180)
.|.|++.. .|. .++|.|. +|++|.
T Consensus 85 ri~GevDk-d~~---------~~eIdV~---~i~~~~ 108 (109)
T 1nnx_A 85 EIQGEVDK-DWN---------SVEIDVK---QIRKVN 108 (109)
T ss_dssp EEEEEEEE-ETT---------EEEEEEE---EEEEC-
T ss_pred EEEEEECC-CCC---------ceEEEEE---EEEEcc
Confidence 99999982 231 3488888 788764
No 54
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=44.53 E-value=30 Score=23.68 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=30.0
Q ss_pred HhcCCCCeEEEEEEeEEe----eeecCCCCeEEEEEEEEE-EeCCceEEecCCC
Q 030281 117 KQLVKNSSVYVEGDIEIR----VYNDSINGEVKNIPEICI-RRDGTLRLVKSGE 165 (180)
Q Consensus 117 ~~l~KG~~V~VeGrL~~~----~y~d~~dG~~~~~~eI~v-~~~g~i~~l~~k~ 165 (180)
..|++|+.|-|.|++..- .|..+ +|......++.+ +..|.|++.-..+
T Consensus 6 ~dl~~g~~v~i~~~V~~~~~~r~~~~~-~G~~~~v~~~~l~DeTG~I~~tlW~~ 58 (97)
T 3e0e_A 6 SELMPNLSGTINAEVVTAYPKKEFSRK-DGTKGQLKSLFLKDDTGSIRGTLWNE 58 (97)
T ss_dssp GGCCTTEEEEEEEEEEEECCCEEEC-----CCEEEEEEEEEETTEEEEEEEEGG
T ss_pred HHCCCCCcEEEEEEEEECCCceEEEcC-CCCeeEEEEEEEECCCCcEEEEEECC
Confidence 468899999999988754 46666 786555555444 5688888754433
No 55
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=38.46 E-value=23 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.7
Q ss_pred EEEEEecCchhHHHHHHhcCCCCeEEEE
Q 030281 101 WHRIAVHNEILGSYAVKQLVKNSSVYVE 128 (180)
Q Consensus 101 w~~V~~~gk~~Ae~~~~~l~KG~~V~Ve 128 (180)
-++|++|.. .|.++.+.|+.|+-|.+.
T Consensus 66 tlqVtlwd~-ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDE-HDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHH-HHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECc-HHHHHHhhCCCCCEEEEE
Confidence 379999998 899999899999999864
No 56
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=37.88 E-value=20 Score=32.48 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=45.5
Q ss_pred CceEEEEEecCchhHHHHHHhcCCCCeEEEEEEeEEeeeecCCCC-eEEEEEEEEEEeCCceEEecCCCCCCCCChhh
Q 030281 98 PVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSING-EVKNIPEICIRRDGTLRLVKSGESISKISFDD 174 (180)
Q Consensus 98 ~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeGrL~~~~y~d~~dG-~~~~~~eI~v~~~g~i~~l~~k~~~~~~~~~~ 174 (180)
.+.-+.|.+.+. +...++.||+|.|.|-++.........| ...+.+.|.+. .|+...........+.++
T Consensus 203 ~pr~~~v~l~~d-----lv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~---~i~~~~~~~~~~~~t~~~ 272 (595)
T 3f9v_A 203 LPRQLEIILEDD-----LVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVS---SIEVSQKVLDEVIISEED 272 (595)
T ss_dssp CCCEEEEEEEGG-----GTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEE---EEEECCCCCCCCCCTTST
T ss_pred CCceEEEEEecc-----cccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEE---eecccccccccCCCCHHH
Confidence 456678888877 4668999999999999998766421023 33466677777 777766554433444333
No 57
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=37.56 E-value=31 Score=27.32 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCCCCeEEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEG 129 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~KG~~V~VeG 129 (180)
..+++|-|..-...+.+.+|+.|+.+.|..=.. ....+.+.+||+ ..+. ...+..|+.|.|--
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~-------------~~~~V~lfLFg~-a~~~-~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKD-------------LDKYISLFLFGD-VHKE-HWKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSSS-------------TTCCEEEEECHH-HHHH-HTTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecCC-------------CCcEEEEEEech-HHHH-hcCcCCceEEEEEC
Confidence 577889888888888888999988776654321 122489999998 3333 45789999988754
No 58
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=35.64 E-value=2.5e+02 Score=25.41 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=38.1
Q ss_pred EEEEEecCc-h---hHHHHHHhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 101 WHRIAVHNE-I---LGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 101 w~~V~~~gk-~---~Ae~~~~~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
-+.|++-.. . ..-..++.|..|+.|.|+|.+..+.=.. .+...-..||.|+ +|.+|...
T Consensus 91 ~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~--~~~~~~~~El~~~---~i~vls~a 153 (548)
T 3i7f_A 91 TCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI--EKATQQDVEIHVT---SIAVVSLA 153 (548)
T ss_dssp EEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC--TTSSSCSEEEEEE---EEEEEECC
T ss_pred eEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc--ccCCCCcEEEEEe---EEEEEecC
Confidence 467776541 0 1122466899999999999998764211 1211235788888 89888765
No 59
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=34.81 E-value=92 Score=25.07 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=54.5
Q ss_pred cccEEEEEEEeCCCCeEEEec---CCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhc-----C
Q 030281 49 GVHKAIICGKVKDTPVQKILR---NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQL-----V 120 (180)
Q Consensus 49 ~mN~v~L~Grlg~dPe~r~t~---nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l-----~ 120 (180)
-+++|-|+|.|...-. +... +...++.|+| +|. +|. ...+.|.+-- +.+....| -
T Consensus 84 PI~~V~IvG~VVg~~~-k~~r~~~~~~~~~~l~I------DDs-SG~------~s~i~~k~~~---~~~~~~gl~l~~~~ 146 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQY-KEKEFNGVEESYVILVI------SDF-IGI------DSKIRVRLSQ---EQFKEVGLTLDKKN 146 (220)
T ss_dssp EECEEEEEEEEEEEEE-ECCBCSSCBCCEEEEEE------ECC-CSS------SCEEEEEEEH---HHHHTTTCCTTSCC
T ss_pred ccEEEEEEEEEEEEEE-EeccccccccceEEEEE------eCC-CCC------CceEEEEecH---HHhhccCccccccC
Confidence 4789999999987433 2222 1234444432 233 352 3456665543 23333222 3
Q ss_pred CCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 121 KNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 121 KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
-|..|-|.|.+.+..=.. +...+..-+|.|+ +|.+|++.
T Consensus 147 ~G~iV~VkG~i~~~r~~~--~~~~~~~rei~ve---~i~vl~~~ 185 (220)
T 3kf8_A 147 YGKIVELEGEIYNWYDSI--NVSKKPDRELKVS---KITVLSHR 185 (220)
T ss_dssp TTCEEEEEEEEEECCCST--TTTSCCCEEEEEE---EEEEEESS
T ss_pred CCeEEEEEEEEEeecccc--ccccccceEEEEE---EEEEeccC
Confidence 599999999999742111 2222334499999 99999876
No 60
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=33.76 E-value=96 Score=27.51 Aligned_cols=46 Identities=17% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHhcCCCCeEEEEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCCC
Q 030281 115 AVKQLVKNSSVYVEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSGE 165 (180)
Q Consensus 115 ~~~~l~KG~~V~VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k~ 165 (180)
.++.|+.|+.|.|+|.+..+.=..+ +...-..||.|+ +|++|....
T Consensus 86 ~~~~l~~e~~V~V~G~v~~~~~~~~--~~~~g~~El~~~---~i~vl~~a~ 131 (487)
T 1eov_A 86 WAGSLNLESIVLVRGIVKKVDEPIK--SATVQNLEIHIT---KIYTISETP 131 (487)
T ss_dssp HHTTCCTTCEEEEEEEEEECSSCCT--TSSEEEEEEEEE---EEEEEECCC
T ss_pred HHhcCCCCCEEEEEEEEEeCCCCCc--CCCCCcEEEEEE---EEEEeeccc
Confidence 4567999999999999987643221 122346899999 899997643
No 61
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=30.38 E-value=1.1e+02 Score=20.94 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=31.0
Q ss_pred HhcCCCCeEEEEEEeEEe----eeecCCCCeEEEEEEE-EEEeCCceEEecCCC
Q 030281 117 KQLVKNSSVYVEGDIEIR----VYNDSINGEVKNIPEI-CIRRDGTLRLVKSGE 165 (180)
Q Consensus 117 ~~l~KG~~V~VeGrL~~~----~y~d~~dG~~~~~~eI-~v~~~g~i~~l~~k~ 165 (180)
..|+.|+.|-|.|.+..- .|+.+ +|......++ ..+..|.|.+.-...
T Consensus 11 ~~L~~g~~v~i~~~V~~~~~~~~~~~k-~G~~~~~~~~~l~D~TG~I~~t~w~~ 63 (115)
T 2k50_A 11 SKLEEGAETPVTGRVMKISSPRTFTTR-KGREGKLANVIIADDTGELRAVFWTE 63 (115)
T ss_dssp TTCCTTCEEEEEEEEEEECCCEECCCT-TSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred HHCCCCCEeEEEEEEEECCCceEEEcC-CCCEEEEEEEEEEeCCCeEEEEEeCc
Confidence 357789999999988766 55566 7743334444 445677787654443
No 62
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=28.11 E-value=38 Score=21.29 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=11.9
Q ss_pred CCCeEEEEEEeEEee
Q 030281 121 KNSSVYVEGDIEIRV 135 (180)
Q Consensus 121 KG~~V~VeGrL~~~~ 135 (180)
-||.|.|+|.|.--+
T Consensus 40 dgdtvtvegqleggs 54 (62)
T 2gjh_A 40 DGDTVTVEGQLEGGS 54 (62)
T ss_dssp CSSCEEEEEECCCCC
T ss_pred cCCEEEEEeEEcCCc
Confidence 399999999986543
No 63
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=27.44 E-value=1.3e+02 Score=26.72 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHH---HHHHhcCCCCeEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGS---YAVKQLVKNSSVYVE 128 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae---~~~~~l~KG~~V~Ve 128 (180)
.|+|.|+|-. .|. .|+ +.|-.. +|. +| -+.|++-.+...+ ...+.|..|+.|.|+
T Consensus 58 ~V~v~Gwv~~---~R~--~gk--~~F~~L-----rD~-sg---------~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~ 115 (493)
T 3a74_A 58 EVAVAGRIMT---KRG--MGK--AGFAHI-----QDV-TG---------QIQIYVRQDDVGEQQYELFKISDLGDIVGVR 115 (493)
T ss_dssp EEEEEEEEEE---EEE--ETT--EEEEEE-----EET-TE---------EEEEEEEHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEEEE---Eec--CCC--cEEEEE-----EEC-CE---------eEEEEEECCcCCHHHHHHHhcCCCCCEEEEE
Confidence 6999999976 333 243 233222 222 12 3777764331211 134679999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
|.+..+ + .| ..+|.|+ +|++|.+.
T Consensus 116 G~v~~~----~-~g----e~ei~~~---~i~vl~~~ 139 (493)
T 3a74_A 116 GTMFKT----K-VG----ELSIKVS---SYEFLTKA 139 (493)
T ss_dssp EEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred EEEEeC----C-CC----cEEEEEE---EEEEcccc
Confidence 999865 3 45 3789998 89999754
No 64
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.19 E-value=66 Score=30.28 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHHhcCC--CCeEEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVK--NSSVYVEG 129 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~~l~K--G~~V~VeG 129 (180)
.+++.|.|...+..+. .++..+.+.+ . |. +| -+.++.|+. .++.+.++. |..++|.|
T Consensus 167 ~~~~~~~v~~~~~~~~--~~~~~~~~~~--~----d~-~~---------~~~~~~f~~---~~~~~~~~~~~g~~~~~~G 225 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKF--QNMNILTAVL--S----DG-LV---------HVPLKWFNQ---DYLQTYLKQLTGKEVFVTG 225 (780)
T ss_dssp CCEEEECCCCCEEEEC--SSCEEEEEEE--C----CS-SC---------CEEEEECSC---CTTHHHHHTTCSSCEEEEE
T ss_pred EEEEEEEEEEEEeecC--CCCeEEEEEE--E----EC-Cc---------eEEEEEECc---HHHHhhCccCCCCEEEEEE
Confidence 7899999998765432 2333333322 2 22 23 267888886 257778889 99999999
Q ss_pred EeEEeeeecCCCCeEEEEEEEEEEe---CCceEEecCC
Q 030281 130 DIEIRVYNDSINGEVKNIPEICIRR---DGTLRLVKSG 164 (180)
Q Consensus 130 rL~~~~y~d~~dG~~~~~~eI~v~~---~g~i~~l~~k 164 (180)
+++... .. .+.....+++.+.. .+.|.++.+-
T Consensus 226 ~~~~~~--~~-~~~~~~~p~~~~~~~~~~~~~~pvY~~ 260 (780)
T 1gm5_A 226 TVKSNA--YT-GQYEIHNAEVTPKEGEYVRRILPIYRL 260 (780)
T ss_dssp EECSCC--TT-SSCCEEEEEEECSCCSSSSSCEEECCC
T ss_pred EEEEcc--CC-CcEEEEcCEEeeccccccCceeeEecC
Confidence 997621 01 13334555554321 2457666654
No 65
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=23.73 E-value=1.9e+02 Score=20.09 Aligned_cols=46 Identities=26% Similarity=0.196 Sum_probs=26.6
Q ss_pred hcCCCC-eEEEEEEeEE----eeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 118 QLVKNS-SVYVEGDIEI----RVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 118 ~l~KG~-~V~VeGrL~~----~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
.|+.|+ .|-+.|.+.. +.|+.+ +|...+..-+.+++.|.|.+--..
T Consensus 7 dL~~~~~~v~~~~~V~~~~~~~~~~~k-~G~~~~~~~~l~D~TG~I~~tlW~ 57 (119)
T 1o7i_A 7 NLKPNMESVNVTVRVLEASEARQIQTK-NGVRTISEAIVGDETGRVKLTLWG 57 (119)
T ss_dssp GCCTTCSSEEEEEEEEEECCCEEECCT-TCCEEEEEEEEEETTEEEEEEEEG
T ss_pred HCcCCCCcEEEEEEEEECCCCeeEEec-CCCEEEEEEEEEeCCCEEEEEEEC
Confidence 456675 5777777654 455666 676333333455566777664333
No 66
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=23.66 E-value=1.6e+02 Score=26.37 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchh---HHH--HHHhcCCCCeEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEIL---GSY--AVKQLVKNSSVY 126 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~---Ae~--~~~~l~KG~~V~ 126 (180)
.|+|.|+|-. .|. .|+.++ |-.. +|. +| -+.|++-.+.. ..+ +.+.|..||.|.
T Consensus 57 ~V~v~Grv~~---~R~--~gkk~~-F~~L-----rD~-sg---------~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~ 115 (521)
T 3bju_A 57 TLKVAGRIHA---KRA--SGGKLI-FYDL-----RGE-GV---------KLQVMANSRNYKSEEEFIHINNKLRRGDIIG 115 (521)
T ss_dssp CEEEEEEEEE---EEE--SSSSEE-EEEE-----EET-TE---------EEEEEEEGGGSSCHHHHHHHHHHCCTTCEEE
T ss_pred EEEEEEEEEE---Eec--CCCCcE-EEEE-----EEC-CE---------EEEEEEECCccCCHHHHHHHHhcCCCCCEEE
Confidence 5999999965 232 352232 3221 121 12 37777754311 112 346799999999
Q ss_pred EEEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 127 VEGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 127 VeGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
|+|.+.... .|. .+|.|+ +|++|.+.
T Consensus 116 V~G~v~~t~-----~ge----~ei~~~---~i~~l~~~ 141 (521)
T 3bju_A 116 VQGNPGKTK-----KGE----LSIIPY---EITLLSPC 141 (521)
T ss_dssp EEEEEEECT-----TCC----EEEEEE---EEEEEECC
T ss_pred EEEEEEecC-----CCC----EEEEEe---EEEEeecC
Confidence 999988662 353 788998 89998754
No 67
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.96 E-value=78 Score=27.32 Aligned_cols=69 Identities=4% Similarity=0.054 Sum_probs=38.3
Q ss_pred EEEEEEeCCCCeEEEe--c-CCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhHHHHHH--hcCCCCeEEE
Q 030281 53 AIICGKVKDTPVQKIL--R-NGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILGSYAVK--QLVKNSSVYV 127 (180)
Q Consensus 53 v~L~Grlg~dPe~r~t--~-nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~Ae~~~~--~l~KG~~V~V 127 (180)
|-++|.|..--.++.. . +|+....-.|... |. +|. -++|++||+ .|+.+.. ....|..|.|
T Consensus 136 vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~----D~-sg~--------~i~~tLWg~-~A~~f~~~~~~~~~~VV~i 201 (444)
T 4gop_C 136 CDVIGILDSYGELSEIVSKASQRPVQKRELTLV----DQ-GNR--------SVKLTLWGK-TAETFPTNAGVDEKPVLAF 201 (444)
T ss_dssp CBEEEEEEEECCCEEECCTTTCSCEEEEEEEEE----CT-TCB--------EEEEEEEHH-HHHTSTTSTTSSSCCEEEE
T ss_pred eEEEEEEEEcCCcEEEEEccCCceeeEEEEEEE----eC-CCC--------EEEEEEEhh-hhhhhhhhhccCCCCEEEE
Confidence 4477777665444332 2 4654333333322 22 242 489999999 8875442 2567777766
Q ss_pred EEEeEEeee
Q 030281 128 EGDIEIRVY 136 (180)
Q Consensus 128 eGrL~~~~y 136 (180)
.| .+...|
T Consensus 202 ~~-~kV~~f 209 (444)
T 4gop_C 202 KG-VKVGDF 209 (444)
T ss_dssp ES-CEEECT
T ss_pred Ee-EEEeec
Confidence 66 344455
No 68
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1
Probab=21.82 E-value=69 Score=25.34 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.6
Q ss_pred hHHHHHHhcCCCCeEEEEEEeEEe
Q 030281 111 LGSYAVKQLVKNSSVYVEGDIEIR 134 (180)
Q Consensus 111 ~Ae~~~~~l~KG~~V~VeGrL~~~ 134 (180)
+.+.-.+.|+.||.|++.|.|-+-
T Consensus 23 lt~e~v~~L~vGD~V~LsG~i~ta 46 (192)
T 2isb_A 23 LVKDQILKLKVGDVVYITGEIFTA 46 (192)
T ss_dssp CCHHHHHHCCTTCEEEEEEEEEEC
T ss_pred CCHHHHhhCCCCCEEEEEEEEEEE
Confidence 444557799999999999999774
No 69
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=21.73 E-value=1.1e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCch-hHHHHHHhcCCCCeEEEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEI-LGSYAVKQLVKNSSVYVEGD 130 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~-~Ae~~~~~l~KG~~V~VeGr 130 (180)
.|+|.|+|-. .|.. |+ +.|-.. +|. +| .+.|++-.+. ..+ .++.|+.|+.|.|+|.
T Consensus 18 ~V~v~Gwv~~---~R~~--g~--~~F~~l-----rD~-~g---------~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~ 74 (429)
T 1wyd_A 18 EVIWAGWVHL---LRDL--GG--KKFIIL-----RDK-TG---------LGQVVVDKNSSAFG-ISQELTQESVIQVRGI 74 (429)
T ss_dssp EEEEEEEEEE---EEEE--TT--EEEEEE-----EET-TE---------EEEEEECTTSTTHH-HHTTCCTTCEEEEEEE
T ss_pred EEEEEEEEEE---EecC--CC--eEEEEE-----EEC-Ce---------eEEEEEeCChHHHH-HHHhCCCCCEEEEEEE
Confidence 6999999976 3332 44 233222 222 12 2777765431 122 3468999999999999
Q ss_pred eEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 131 IEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 131 L~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
+..+.= . .| ..+|.|+ +|++|.+.
T Consensus 75 v~~~~~--~-~~----~~el~~~---~~~vl~~~ 98 (429)
T 1wyd_A 75 VKADKR--A-PR----GIELHAE---EITLLSKA 98 (429)
T ss_dssp EEECSS--S-GG----GEEEEEE---EEEEEECC
T ss_pred EEecCC--C-Cc----cEEEEEe---EEEEeccC
Confidence 987641 1 12 4788898 89998754
No 70
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=20.62 E-value=1.4e+02 Score=26.59 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=49.4
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhH----HHHHHhcCCCCeEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG----SYAVKQLVKNSSVYV 127 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~A----e~~~~~l~KG~~V~V 127 (180)
.|+|.|+|-. .|. .|+ +.|-.. +|. +| -+.|++-.+... +...+.|..|+.|.|
T Consensus 66 ~V~v~Gwv~~---~R~--~gk--~~F~~L-----rD~-sg---------~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V 123 (504)
T 1e1o_A 66 EVSVAGRMMT---RRI--MGK--ASFVTL-----QDV-GG---------RIQLYVARDSLPEGVYNDQFKKWDLGDIIGA 123 (504)
T ss_dssp EEEEEEEEEE---EEE--ETT--EEEEEE-----EET-TE---------EEEEEEETTTSSTTHHHHTGGGCCTTCEEEE
T ss_pred EEEEEEEEEE---Eec--CCC--cEEEEE-----EEC-Ce---------eEEEEEECCcCCHHHHHHHHhcCCCCCEEEE
Confidence 6999999976 333 243 233222 222 12 377776433111 113467999999999
Q ss_pred EEEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 128 EGDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 128 eGrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
+|.+..+ + .| ..+|.|+ +|++|.+.
T Consensus 124 ~G~v~~~----~-~g----e~ei~~~---~i~vl~~a 148 (504)
T 1e1o_A 124 RGTLFKT----Q-TG----ELSIHCT---ELRLLTKA 148 (504)
T ss_dssp EEEEEEC----T-TC----CEEEEEE---EEEEEECC
T ss_pred EEEEEec----C-Cc----eEEEEEE---EEEEeccc
Confidence 9999875 3 45 3788998 89998754
No 71
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.11 E-value=1.7e+02 Score=26.44 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCCeEEEecCCeEEEEEEEEECCceeccCCCcccCCCCceEEEEEecCchhH-H--HHHHhcCCCCeEEEE
Q 030281 52 KAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFDQRIVGSKDLPKPVQWHRIAVHNEILG-S--YAVKQLVKNSSVYVE 128 (180)
Q Consensus 52 ~v~L~Grlg~dPe~r~t~nG~~v~~fsVa~~~~~~d~~~Ge~~~~~~t~w~~V~~~gk~~A-e--~~~~~l~KG~~V~Ve 128 (180)
.|+|.|+|-. .|. .|+ +.|-.. +|. +| -+.|++-.+... + ...+.|..||.|.|+
T Consensus 88 ~V~v~GwV~~---~R~--~Gk--~~Fi~L-----rD~-sg---------~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~ 145 (529)
T 4ex5_A 88 EVAIAGRMML---KRV--MGK--ASFATV-----QDG-SG---------QIQFFVTPADVGAETYDAFKKWDLGDIVAAR 145 (529)
T ss_dssp EEEEEEEEEE---EEE--ETT--EEEEEE-----ECS-SC---------EEEEEECHHHHCHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEEEEEEe---eec--CCC--eEEEEE-----EeC-Ce---------eEEEEEECCcCCHHHHHHHhcCCCCCEEEEE
Confidence 6999999965 233 243 234222 222 23 367766443111 1 234579999999999
Q ss_pred EEeEEeeeecCCCCeEEEEEEEEEEeCCceEEecCC
Q 030281 129 GDIEIRVYNDSINGEVKNIPEICIRRDGTLRLVKSG 164 (180)
Q Consensus 129 GrL~~~~y~d~~dG~~~~~~eI~v~~~g~i~~l~~k 164 (180)
|.+... + .| ..+|.|+ +|++|.+.
T Consensus 146 G~v~~t----~-~g----elel~~~---~i~vLs~a 169 (529)
T 4ex5_A 146 GVLFRT----N-KG----ELSVKCT---QLRLLAKA 169 (529)
T ss_dssp EEEEEC----T-TS----CEEEEEE---EEEEEECC
T ss_pred EEEEEc----C-CC----cEEEEEE---EEEEEecC
Confidence 999762 3 45 3788888 89988764
Done!