Your job contains 1 sequence.
>030283
MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS
AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKM
NAYNKKQDGDEASDKSKSEVNDEDEASGEEEHQLEPEPEPEQDEDEEVEEDEDDEEDDDD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030283
(180 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 235 5.4e-23 2
TAIR|locus:2053893 - symbol:HMGB4 "high mobility group B4... 169 4.8e-17 2
TAIR|locus:2128003 - symbol:HMGB5 "high mobility group B5... 122 2.1e-10 2
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 134 4.7e-09 1
TAIR|locus:2154433 - symbol:HMGB6 "high-mobility group bo... 133 1.1e-08 1
ZFIN|ZDB-GENE-050417-290 - symbol:hmgb3b "high-mobility g... 127 2.6e-08 1
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 122 1.1e-07 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 121 1.2e-07 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 120 2.2e-07 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 120 2.2e-07 1
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 118 2.5e-07 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 118 2.8e-07 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 117 2.9e-07 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 119 3.1e-07 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 118 3.4e-07 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 118 3.4e-07 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 118 3.4e-07 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 118 3.5e-07 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 118 3.5e-07 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 118 3.5e-07 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 118 3.5e-07 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 117 3.7e-07 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 116 3.8e-07 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 117 4.9e-07 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 117 4.9e-07 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 116 6.2e-07 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 116 6.3e-07 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 116 6.4e-07 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 116 6.4e-07 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 115 6.6e-07 1
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 115 7.3e-07 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 113 8.0e-07 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 113 9.2e-07 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 114 9.6e-07 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 113 1.1e-06 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 113 1.1e-06 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 114 1.1e-06 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 114 1.1e-06 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 113 1.3e-06 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 112 1.9e-06 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 112 1.9e-06 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 112 1.9e-06 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 112 1.9e-06 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 110 2.4e-06 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 111 2.4e-06 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 110 3.0e-06 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 110 3.2e-06 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 104 9.1e-06 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 104 1.6e-05 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 101 2.2e-05 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 102 2.6e-05 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 102 2.6e-05 1
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 90 3.0e-05 2
GENEDB_PFALCIPARUM|MAL8P1.72 - symbol:MAL8P1.72 "high mob... 93 0.00010 1
UNIPROTKB|Q8IB14 - symbol:PfHMGB2 "High mobility group pr... 93 0.00010 1
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 96 0.00012 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 94 0.00018 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 93 0.00026 1
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 86 0.00033 2
UNIPROTKB|F1M607 - symbol:F1M607 "Uncharacterized protein... 92 0.00034 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 84 0.00046 2
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 87 0.00053 1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci... 83 0.00068 2
UNIPROTKB|P23497 - symbol:SP100 "Nuclear autoantigen Sp-1... 98 0.00068 1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 94 0.00079 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 85 0.00080 1
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 235 (87.8 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 51/91 (56%), Positives = 61/91 (67%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFFVF+E+FR+TFKKENP S+S +EKAPY +KAEK K EY K
Sbjct: 43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102
Query: 120 MNAYNKK-QDG---DEASDKSKSEVNDEDEA 146
+ AYNKK ++G DE SDKS SEVNDED+A
Sbjct: 103 IKAYNKKLEEGPKEDEESDKSVSEVNDEDDA 133
Score = 45 (20.9 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1 MKGAKGKGAARVSQEALKPNDRK-VGKRKAA 30
MKGAK K R S+ ++ K G+ KAA
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAA 31
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 169 (64.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 42/95 (44%), Positives = 54/95 (56%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFFVFLE+FRK F NPN +M+ +KAPY +KAE K+EY K
Sbjct: 40 SAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKN 99
Query: 120 MNAYNKK-QDG----DEASDKSKSEVND---EDEA 146
+ YN K G ++ SDKSKSEV++ E+EA
Sbjct: 100 VQQYNLKLASGTNREEDDSDKSKSEVDEAVSEEEA 134
Score = 54 (24.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKR 27
MKG + K A + + LK RK GK+
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGKK 27
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 122 (48.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FFVFL++FRK F NP+ +M+ E+AP+ +K++ K+EY
Sbjct: 39 SPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVT 98
Query: 120 MNAYNKK-QDGDEAS-DKSKSEVNDED 144
M YN + +G++ + D K E +D
Sbjct: 99 MQQYNMELANGNKTTGDDEKQEKAADD 125
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKR 27
MK + + +R + + LK KVGK+
Sbjct: 1 MKDNQTEVESRSTDDRLKVRGNKVGKK 27
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 36/89 (40%), Positives = 42/89 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F EFR K+E P +S EK PYE KA KLK +Y K
Sbjct: 99 SAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWN-KISSEEKQPYEKKAAKLKEKYEKD 157
Query: 120 MNAYNKKQD--GDEASDKSKSE-VNDEDE 145
+ AY K G A SK + NDEDE
Sbjct: 158 IAAYRSKGKVGGGAAKAPSKPDKANDEDE 186
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
+AFF+F+ +FRKTFK E+ N S++ EK Y KA +LK+EY K
Sbjct: 120 TAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKS 178
Query: 120 MNAYNKKQDGDEASDKSKSEVNDEDE 145
+ + N + +E +K +V+D +E
Sbjct: 179 LES-NDADEEEEDEEKQSDDVDDAEE 203
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F E R K +NP+ ++S +EK P+ S A+KLK +Y K
Sbjct: 99 SGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWN-NLSDSEKQPFLSNADKLKDKYQKD 157
Query: 120 MNAYNKKQDGDEASDKSKSEVNDEDE 145
M Y KK G +S KS+ + +D+D+
Sbjct: 158 MAFYRKKGSGGSSSAKSEPKDDDDDD 183
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/94 (36%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK EY K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEEYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/90 (35%), Positives = 44/90 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F EFR K NP ++S EK PY +KA KLK +Y K
Sbjct: 98 SAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLSDGEKQPYNNKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDE--ASDKSKSEVNDEDE 145
+ Y K DG + A+ ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGAATKAARKKVEEEDE 186
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 120 (47.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/95 (36%), Positives = 42/95 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F EFR K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGD---------EASDKSKSEVNDEDE 145
+ AY K D E S K K E DEDE
Sbjct: 159 IAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDE 193
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 120 (47.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/95 (36%), Positives = 42/95 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F EFR K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGD---------EASDKSKSEVNDEDE 145
+ AY K D E S K K E DEDE
Sbjct: 159 IAAYRAKGKVDAGKKVVAKAEKSKKKKEEEEDEDE 193
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 89 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 147
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 148 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 181
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 118 (46.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWN-NLSDSEKQPYINKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + + K ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGAAKVARKKVEEEDE 185
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWN-NLSDSEKQPYINKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + + K ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGAAKVAQKKVEEEDE 185
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 119 (46.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 31/89 (34%), Positives = 43/89 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S +EK PY +KA KLK +Y K
Sbjct: 116 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLSDSEKQPYNNKAAKLKEKYEKD 174
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +EDE
Sbjct: 175 VADYKSKGKFDGAKGPAKVARKKVEEEDE 203
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 118 (46.6 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 118 (46.6 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 192
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 118 (46.6 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKGEAGKKGPGRPTGSKKKNEPEDEEE 192
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEE 192
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 117 (46.2 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 31/90 (34%), Positives = 43/90 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S EK PY +KA KLK +Y K
Sbjct: 97 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLSDGEKQPYNNKAAKLKEKYEKD 155
Query: 120 MNAYNKKQ--DGDE--ASDKSKSEVNDEDE 145
+ Y K DG + A+ ++ +V +EDE
Sbjct: 156 VADYKSKGKFDGAKGAATKAARKKVEEEDE 185
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 65 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 123
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 124 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 155
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 32/92 (34%), Positives = 43/92 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
AY K D A ++KSK + +ED+
Sbjct: 159 TAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 117 (46.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 32/92 (34%), Positives = 43/92 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
AY K D A ++KSK + +ED+
Sbjct: 159 TAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 116 (45.9 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 116 (45.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 116 (45.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 116 (45.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 115 (45.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLSDSEKQPYINKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK---SKSEVNDEDE 145
+ Y K DG + K K E +DEDE
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEDDEDE 187
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 115 (45.5 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 32/94 (34%), Positives = 41/94 (43%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K ++P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G A K K+E +E+E
Sbjct: 159 IAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEE 192
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 113 (44.8 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP +++ +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLNDSEKQPYITKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEEDE 185
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 113 (44.8 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP +++ +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLNDSEKQPYITKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEEDE 185
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 114 (45.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 31/94 (32%), Positives = 42/94 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K ++P ++ +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAK-DKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G A K K+E +E+E
Sbjct: 159 IAAYRAKSKSDAGKKGPGRPAGSKKKAEPEEEEE 192
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 113 (44.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP +++ +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLNDSEKQPYITKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +EDE
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEEDE 185
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 113 (44.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S +EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWN-NLSDSEKQPYMTKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +E+E
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEEEE 185
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDED 144
+ AY K D A ++KSK + +ED
Sbjct: 159 IPAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDED 144
+ AY K D A ++KSK + +ED
Sbjct: 159 IPAYRAKGKPDAAKKGVVKAEKSKKKKEEED 189
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E R K E+P S +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWS-EQSAKDKQPYEQKAAKLKEKYEKD 158
Query: 120 MNAYN--------KKQDGDEASDKSKSEVNDEDE 145
+ AY KK G K K+E DE+E
Sbjct: 159 IAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEE 192
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 110 (43.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/89 (33%), Positives = 42/89 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EFR K NP ++S EK PY +KA KLK +Y K
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLSDNEKQPYVTKAAKLKEKYEKD 156
Query: 120 MNAYNKKQ--DGDEASDK-SKSEVNDEDE 145
+ Y K DG + K ++ +V +E+E
Sbjct: 157 VADYKSKGKFDGAKGPAKVARKKVEEEEE 185
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 111 (44.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKHPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 110 (43.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/92 (32%), Positives = 43/92 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE A KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAAD-DKQPYEKMAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 110 (43.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 30/92 (32%), Positives = 44/92 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT-AVDDKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +E++
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEED 190
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 104 (41.7 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 26/73 (35%), Positives = 34/73 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA 132
+ AY K D A
Sbjct: 159 IAAYRAKGKPDAA 171
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K PY A KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAAD-DKQPYGKMAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 101 (40.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/89 (31%), Positives = 40/89 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S FF+F EF K NP +++ +EK PY ++A KLK +Y K
Sbjct: 97 SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWK-NLNDSEKQPYITQAAKLKEKYEKD 155
Query: 120 MNAYNKKQDGDEASDKSK---SEVNDEDE 145
+ Y K D A +K +V +EDE
Sbjct: 156 VAVYKSKGKSDGAKGPAKVAQKKVEEEDE 184
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+ K E+P + + +K P E KA KLK +Y K
Sbjct: 100 SAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPCEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+ K E+P + + +K P E KA KLK +Y K
Sbjct: 100 SAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPCEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 159 IAAYRAKGKPDAAKKGVVKAEKSKKKKEEEDD 190
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 90 (36.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SA+ ++L R+ K ENP +MS +K ++ +AE+ K +Y K
Sbjct: 546 SAYMLWLNASREKIKSENPGISITDLSKKAGEIWK-NMSRDKKEEWDRRAEEAKRDYEKA 604
Query: 120 MNAYNKKQDGDEASDKSKSEVNDEDEA 146
M YN EAS K K ++ +A
Sbjct: 605 MKEYNTSAP-TEASKKEKKTKGEKKKA 630
Score = 42 (19.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGK 26
+KG+ G R+S+ L + K GK
Sbjct: 14 VKGSMNDGRLRLSRAGLMYKNNKTGK 39
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXX-XSMSPAEKAPYESKAEKLKSEYGK 118
SA+ ++++ R KE P +SPA+KAPYE KA+ K Y K
Sbjct: 29 SAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSK 88
Query: 119 KMNAYNKK 126
++ Y KK
Sbjct: 89 EIEEYRKK 96
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXX-XSMSPAEKAPYESKAEKLKSEYGK 118
SA+ ++++ R KE P +SPA+KAPYE KA+ K Y K
Sbjct: 29 SAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYSK 88
Query: 119 KMNAYNKK 126
++ Y KK
Sbjct: 89 EIEEYRKK 96
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 61 AFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKM 120
AFF+F E+R K E+P + + +K P E KA KLK +Y K +
Sbjct: 101 AFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNT-AVDDKQPCEKKAAKLKEKYEKDI 159
Query: 121 NAYNKKQDGDEA------SDKSKSEVNDEDE 145
AY K D ++KSK + +ED+
Sbjct: 160 AAYRAKGKPDAVKKGVVKAEKSKKKKEEEDD 190
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+R K E+P + + +K P E KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNT-AVDDKQPCEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA 132
+ AY K D A
Sbjct: 159 IAAYRAKGKPDAA 171
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+F E+ K E+P + + +K P E KA KLK +Y K
Sbjct: 100 SAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPGEKKAAKLKEKYEKD 158
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K + A ++KSK + +E++
Sbjct: 159 IAAYQAKGKPEAAKKGVVKAEKSKKKKEEEED 190
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 86 (35.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 23/87 (26%), Positives = 37/87 (42%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SA+ ++L R+ K ENP + +K ++ KAE+ K +Y K
Sbjct: 551 SAYMLWLNGNRERIKSENPGISITEISKKAGEMWK-QLGKDKKEEWDKKAEEAKRQYEKA 609
Query: 120 MNAYNKKQDGDEASDKSKSEVNDEDEA 146
M Y + G A+ K K + + EA
Sbjct: 610 MKEYKESGGGAAAATKEKKKKGGKVEA 636
Score = 36 (17.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGK 26
+KG+ G R S++ + K GK
Sbjct: 14 VKGSWNDGRLRFSKQTVVYKSHKTGK 39
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SAFF+ E+R K E+P + + +K P E KA KLK +Y K
Sbjct: 96 SAFFLLCSEYRPKIKGEHPGLSIGDVARKLGEMWNNTAAD-DKQPCE-KAAKLKEKYEKD 153
Query: 120 MNAYNKKQDGDEA------SDKSKSEVNDEDE 145
+ AY K D A ++KSK + +ED+
Sbjct: 154 IAAYRAKGKPDAAKKGVVKAEKSKKKKKEEDD 185
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 84 (34.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SA+ ++ E R K EN + ++S +KAPY+ A+K K Y ++
Sbjct: 251 SAYLIYANERRAALKGENKSVIEVAKMAGEEWK---NLSEEKKAPYDQMAKKNKEIYLQE 307
Query: 120 MNAYNKKQDGDEASDKSKSE 139
M Y + ++ + S K + E
Sbjct: 308 MEGYKRTKEEEAMSQKKEEE 327
Score = 81 (33.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S++F+F ++ RK+ +E+P + EK Y SKA +L Y K+
Sbjct: 377 SSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWM-ELGEEEKQVYNSKAAELMEAYKKE 435
Query: 120 MNAYNK 125
+ YNK
Sbjct: 436 VEEYNK 441
Score = 32 (16.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRK 28
MK K SQ + + K GK+K
Sbjct: 95 MKEFKPNMTFAFSQSLAQTEEEKKGKKK 122
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 87 (35.7 bits), Expect = 0.00053, P = 0.00053
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGK 118
SAFF+F E+R K E+P + + +K PYE KA KLK +Y K
Sbjct: 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD-DKQPYEKKAAKLKEKYEK 157
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 83 (34.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
SA+ ++L R K ENP + +K ++ KAE+ K EY +
Sbjct: 548 SAYMLWLNSSRDRIKSENPGISITEISKKAGEMWK-QLGKDKKEEWDGKAEEAKKEYDRA 606
Query: 120 MNAYNKKQDGDEASDKSK 137
M Y + G S K +
Sbjct: 607 MREYRESGGGSSGSSKKE 624
Score = 36 (17.7 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGK 26
+KG+ G R S++ + + K GK
Sbjct: 14 VKGSWNDGRLRFSKQTVVYKNSKTGK 39
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 98 (39.6 bits), Expect = 0.00068, P = 0.00068
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 61 AFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKM 120
AFF+F E+R K E+P + + A+K YE KA KLK +Y K +
Sbjct: 775 AFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAA-ADKQFYEKKAAKLKEKYKKDI 833
Query: 121 NAYNKKQDGDEA------SDKSKSEVNDEDE 145
AY K + A ++KSK + +E++
Sbjct: 834 AAYRAKGKPNSAKKRVVKAEKSKKKKEEEED 864
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 94 (38.1 bits), Expect = 0.00079, P = 0.00079
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKK 119
S++F+F ++ RK +E P +S EK Y KA KL Y K+
Sbjct: 384 SSYFLFSKDERKKLTEERPGTNNATVTALISLKWK-ELSEEEKQVYNGKAAKLMEAYKKE 442
Query: 120 MNAYNKKQDGDEAS 133
+ AYNKK +S
Sbjct: 443 VEAYNKKSAATTSS 456
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 85 (35.0 bits), Expect = 0.00081, P = 0.00080
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 60 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEY 116
S FF+F EFR K NP +++ +EK PY +KA KLK +Y
Sbjct: 98 SGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN-NLNDSEKQPYITKAAKLKEKY 153
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.300 0.119 0.311 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 180 111 0.00091 102 3 11 24 0.47 31
29 0.42 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 430 (46 KB)
Total size of DFA: 86 KB (2068 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 14.33u 0.08s 14.41t Elapsed: 00:00:19
Total cpu time: 14.34u 0.09s 14.43t Elapsed: 00:00:21
Start: Fri May 10 18:01:20 2013 End: Fri May 10 18:01:41 2013