BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030283
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 122/150 (81%), Gaps = 5/150 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEK---PTKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKK 119
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS AEKAPYE KA K K+EY K+
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQ 117
Query: 120 MNAYNKK-QDGDEASDKSKSEVNDEDEASG 148
M+AYNK ++G + S+KS+SE+NDEDEASG
Sbjct: 118 MDAYNKNLEEGSDESEKSRSEINDEDEASG 147
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 85/107 (79%), Gaps = 4/107 (3%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
K+ KKA KDPNKPKRPPSAFFVF+E+FRKT+K+++PN +V+ VGKA G KWK ++ AEK
Sbjct: 24 KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEK 83
Query: 103 APYESKAEKLKSEYGKKMNAYNKKQ----DGDEASDKSKSEVNDEDE 145
AP+ SKAEK K EY K + AYNKKQ +E SDKS+SEVND+DE
Sbjct: 84 APFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDE 130
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 4/102 (3%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKA 103
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S +EKA
Sbjct: 27 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKA 86
Query: 104 PYESKAEKLKSEYGKKMNAYNKK-QDG---DEASDKSKSEVN 141
PY +KAEK K EY K + AYNKK ++G DE SDKS SEVN
Sbjct: 87 PYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVN 128
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 67/81 (82%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYE 106
KA KDPNKPKRPPSAFFVF+EEFRK F KE+P AVSAVGKAAG KWK+MS AEKAPY
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 95
Query: 107 SKAEKLKSEYGKKMNAYNKKQ 127
+K+EK K EY K M AYNKKQ
Sbjct: 96 AKSEKRKVEYEKNMRAYNKKQ 116
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 91/156 (58%), Gaps = 28/156 (17%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKM 120
AFFVFLE+FRK F NPN +V+ VGKAAG +WK+M+ +KAPY +KAE K+EY K +
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNV 100
Query: 121 NAYNKKQDG-----DEASDKSKSEVNDEDEASGEEE 151
YN K ++ SDKSKSEV DEA EEE
Sbjct: 101 QQYNLKLASGTNREEDDSDKSKSEV---DEAVSEEE 133
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 83/110 (75%), Gaps = 4/110 (3%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S +K+ K K A KDPNKPKRP SAFFVF+E+FR T+K+E+P +V+AVGKA G KWK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 96 SMSPAEKAPYESKAEKLKSEYGKKMNAYNKK-QDG---DEASDKSKSEVN 141
S+S +EKAPY +KA+K K EY K M AYNKK ++G DE SDKS SEVN
Sbjct: 76 SLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEVN 125
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 73/95 (76%), Gaps = 3/95 (3%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKA 109
KDPNKPKRPPSAFFVF+ +FR+ +KK++PN +V+AVGKA G +WKS+S EKAPY +A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 110 EKLKSEYGKKMNAYNKKQDG---DEASDKSKSEVN 141
K K EY + AYNKK +G +E SDKSKSEVN
Sbjct: 100 LKKKEEYEITLQAYNKKLEGKDDEEGSDKSKSEVN 134
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 84/129 (65%), Gaps = 22/129 (17%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK----REKKAKKDPNKPK 56
MKGAK KGAA+ A AKL SK K R+ KA KDPNKPK
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPK 42
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEY 116
R PSAFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S ++KAPY +KA KLK EY
Sbjct: 43 RAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEY 102
Query: 117 GKKMNAYNK 125
K + AYNK
Sbjct: 103 NKAIAAYNK 111
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 82/130 (63%), Gaps = 23/130 (17%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSK-----RQGKREKKAKKDPNKP 55
MKGAK KGAA+ A AKL SK ++ KA KDPNKP
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAAKGKKGKAGKDPNKP 42
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSE 115
KR PSAFFVF+ EFR+ FK++NP +V+AVGKAAG +WKS+S +EKAPY +KA KLK E
Sbjct: 43 KRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGE 102
Query: 116 YGKKMNAYNK 125
Y K + AYNK
Sbjct: 103 YNKAIAAYNK 112
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 61/90 (67%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D K +G + K KDPN+PK+PPS FFVFL++FRK F NP+ +V VG+AAG KW
Sbjct: 14 DDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKW 73
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124
K+M+ E+AP+ +K++ K+EY M YN
Sbjct: 74 KTMTEEERAPFVAKSQSKKTEYAVTMQQYN 103
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAP 104
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ A A K G KWKS++ EK
Sbjct: 105 EKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTEEEKKV 163
Query: 105 YESKAEKLKSEYGKKM 120
Y KA +LK+EY K +
Sbjct: 164 YLDKAAELKAEYNKSL 179
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++ +K PY
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLTAEDKVPY 143
Query: 106 ESKAEKLKSEYGKKMNAYNKK 126
E KA +LK +Y K + AY K
Sbjct: 144 EKKASRLKEKYEKDITAYRNK 164
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESK 108
KDP KP+ S++ F++ R+ KK++P + S K +WK+MS EK +E
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 109 AEKLKSEYGKKMNAY 123
A+ K Y ++M +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 38 SKRQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SK GK EK+ AKKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK+
Sbjct: 8 SKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKA 66
Query: 97 MSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDEAS 133
+S ++APYE+KA K Y + AYN + D +E+S
Sbjct: 67 LSDKQRAPYEAKAAADKKRYEDEKQAYNAEADEEESS 103
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKS 114
PK+P +AFF FL++FRK +++ENP+V ++ +GK G KWK+M+ EK Y A + +
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 115 EYGKKMNAYNKKQD 128
E+ + M Y K+ +
Sbjct: 123 EFHRAMTEYTKRME 136
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++ ++APY
Sbjct: 15 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALNEKQRAPY 73
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEAS 133
E+KA K Y + AYN Q+ +E+S
Sbjct: 74 EAKAAADKKRYEDEKQAYNADQEEEESS 101
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + GK KKDPN PKRPPS FF+F EF K NP + + V K G W
Sbjct: 77 DYGPAKGGK-----KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIP-IGDVAKKLGEMW 130
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDEA 132
K+++ +EK PY ++A KLK +Y K + Y K D A
Sbjct: 131 KNLNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGA 168
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+ ++ + KR ++ KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK
Sbjct: 6 TSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGIS-FGQVGKMLGERWK 64
Query: 96 SMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDE 131
++S +E+ PYE KA K Y + +YN QD DE
Sbjct: 65 ALSDSERRPYEEKAAADKKRYEDEKASYNAAQDEDE 100
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP +P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129
V KA G W + + EK PYE + L+++Y +++ Y K+ +
Sbjct: 122 Q-VAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNA 166
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
KPK S++ FL +R FK++ PN + KW+S+S EKA YE+ A+
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 113 KSEYGKKMNAY 123
K+ Y ++M Y
Sbjct: 68 KARYQEEMMNY 78
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+ EK PY
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEAT-FGDVGKLLGIKWREMNENEKKPY 77
Query: 106 ESKA 109
E+KA
Sbjct: 78 EAKA 81
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+ EK PY
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEAT-FGDVGKLLGIKWREMNENEKKPY 77
Query: 106 ESKA 109
E+KA
Sbjct: 78 EAKA 81
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + K KKDPN PKRPPSAFF+F EFR K NP ++ + V K G W
Sbjct: 77 DYGPAKG----GKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMW 131
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGD 130
++S EK PY +KA KLK +Y K + Y K D
Sbjct: 132 NNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 167
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V A K +WK+MS EKA ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++ EK
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGERWKALTAEEK 73
Query: 103 APYESKAEKLKSEYGKKMNAYN 124
PYESKA+ K Y + YN
Sbjct: 74 QPYESKAQADKKRYESEKELYN 95
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A A+LD +Q GKR K+ K+DP P++PPS+F +F + K+ENP+ T V
Sbjct: 62 ALAELDKARYQQEMMNYIGKRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129
V KAAG W + AEK PYE KA ++++Y ++ AY + G
Sbjct: 122 Q-VAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFEEQEAYRNQCQG 166
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYESK 108
KD +PK S++ F+ FR FK++ PN + KW+S+S EKA YE+
Sbjct: 4 KDQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 109 AEKLKSEYGKKMNAY 123
AE K+ Y ++M Y
Sbjct: 64 AELDKARYQQEMMNY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W
Sbjct: 77 DYGPAKG----GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMW 131
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDEA 132
++S +EK PY +KA KLK +Y K + Y K D A
Sbjct: 132 NNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGA 169
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V A K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W
Sbjct: 76 DYGPAKG----GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMW 130
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGD 130
++S EK PY +KA KLK +Y K + Y K D
Sbjct: 131 NNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 166
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W
Sbjct: 77 DYGPAKG----GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMW 131
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDEA 132
++S EK PY +KA KLK +Y K + Y K D A
Sbjct: 132 NNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGA 169
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V A K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G+R+K+ K+DP+ P+RPPS+F +F ++ K ENP+ + V
Sbjct: 62 ALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVV 121
Query: 84 SAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123
V KA+G W + + +K PYE +A L+++Y ++++ Y
Sbjct: 122 Q-VAKASGKMWSAKTDVDKQPYEQRAALLRAKYREELSVY 160
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPAEKAPYES 107
K+D KPK S++ FL +R FK++ PN + KW+S+S EKA YE+
Sbjct: 3 KRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKLDKARYQEEMMNY 78
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W
Sbjct: 77 DYGPAKG----GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMW 131
Query: 95 KSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGDEA 132
+++ +EK PY +KA KLK +Y K + Y K D A
Sbjct: 132 NNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGA 169
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118
SA+ F++ R+ KK+NP V A K +WK+MS EK+ ++ A+ K Y +
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 119 KMNAY 123
+M Y
Sbjct: 74 EMKDY 78
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
K+ ++ KKDPN PKR SA+ F E R + ENP +T VG+ G KWK+++ EK
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGIT-FGQVGRILGEKWKALNEDEK 64
Query: 103 APYESKAEKLKSEY 116
APYE+KAE K Y
Sbjct: 65 APYEAKAEADKKRY 78
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
K+ KKDPN PKRP SA+F++L E R FK EN + +V+ + K AG +WK + P EK +
Sbjct: 545 KRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGI-SVTELTKLAGKEWKKIDPDEKQKF 603
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEAS 133
E +K K ++ M Y K Q G S
Sbjct: 604 ERMYQKSKVKFDAAMKEY-KSQGGGRTS 630
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P EK PYE+KA+
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 111 KLKSEYGKKMNAYN 124
K Y + YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + A K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKSDKARYDREMKNY 78
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + A K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + A K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAY 123
K +Y K + AY
Sbjct: 152 KEKYEKDIAAY 162
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + A K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DPNKPK+P S++F+F ++ RK +E P T + V KWK +S EK Y KA
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPG-TNNATVTALISLKWKELSEEEKQVYNGKAA 433
Query: 111 KLKSEYGKKMNAYNKKQDGDEAS 133
KL Y K++ AYNKK +S
Sbjct: 434 KLMEAYKKEVEAYNKKSAATTSS 456
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAE 110
DP KPK P SAF V+ E R ++EN +V V K G +WK++S +KAPYE A+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREENKSVVEV---AKITGEEWKNLSDKKKAPYEKVAK 307
Query: 111 KLKSEYGKKMNAYNKKQDGDEAS 133
K K Y + M Y + ++ + S
Sbjct: 308 KNKETYLQAMEEYKRTKEEEALS 330
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 14 QEALKPNDRKVGKRK----AATAKLDSGSKRQGKREK---KAKKDPNKPKRPPSAFFVFL 66
QE LK +K+ K K T S Q ++EK K KKD + KRP S++ ++
Sbjct: 90 QEKLKVELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 149
Query: 67 EEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEY 116
++ KKENP G KWKS+S +K PYE + + K Y
Sbjct: 150 KDQWTEVKKENPEAD-FKETSNILGAKWKSLSAEDKKPYEERYQVEKEAY 198
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEK 102
KR KAKKDP+ PKRP SA+ F ++ R+ K NP VG+ G KWK MS AEK
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGAKWKEMSEAEK 74
Query: 103 APYESKAEKLKSEYGKKMNAYNKKQ 127
PY A + K+ + AYNK++
Sbjct: 75 KPYNDMANRDKARAEAEKAAYNKRR 99
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKHPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 34 LDSGSKRQG-KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAG 91
+ S R G +R +KAKKDPN PKR S++ F +E R ENP + V+A+GK G
Sbjct: 1 MAGASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIG 60
Query: 92 GKWKSMSPAEKAPYE-------SKAEKLKSEYGKK 119
W ++S EK PYE + E+ K+EY ++
Sbjct: 61 AAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPY 105
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + + +K PY
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPY 144
Query: 106 ESKAEKLKSEYGKKMNAYNKKQDGDEA 132
E KA KLK +Y K + AY K D A
Sbjct: 145 EKKAAKLKEKYEKDIAAYRAKGKPDAA 171
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAEKAPYES 107
K DP KP+ S++ F++ R+ KK++P+ + S K +WK+MS EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 MAKADKARYEREMKTY 78
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112
N PKRPPSAFF+F E R K E+P ++ + K G W S +K PYE KA KL
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGLS-IGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 113 KSEYGKKMNAYNKK 126
K +Y K + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA-VGKAAGGKWKSMSPAEKAPYES 107
K DPNKP+ S++ F++ R+ KK++P+ + A K +WK+MS EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 108 KAEKLKSEYGKKMNAY 123
A+ K+ Y ++M Y
Sbjct: 63 LAKSDKARYDREMKNY 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.298 0.121 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,076,989
Number of Sequences: 539616
Number of extensions: 3475692
Number of successful extensions: 100089
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2552
Number of HSP's successfully gapped in prelim test: 1723
Number of HSP's that attempted gapping in prelim test: 32560
Number of HSP's gapped (non-prelim): 35694
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 57 (26.6 bits)