Query 030283
Match_columns 180
No_of_seqs 179 out of 1215
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 2.3E-24 7.9E-29 156.5 11.3 85 45-130 8-92 (102)
2 2eqz_A High mobility group pro 99.9 3.3E-24 1.1E-28 150.9 10.3 80 45-124 6-86 (86)
3 1k99_A Upstream binding factor 99.9 6.6E-24 2.3E-28 153.4 8.7 82 46-128 2-83 (99)
4 1hme_A High mobility group pro 99.9 7.3E-24 2.5E-28 145.9 7.8 76 49-125 1-76 (77)
5 2lhj_A High mobility group pro 99.9 4E-24 1.4E-28 153.8 5.8 84 43-126 11-95 (97)
6 1cg7_A Protein (NON histone pr 99.9 1.8E-24 6.1E-29 154.6 3.8 83 44-127 10-92 (93)
7 2crj_A SWI/SNF-related matrix- 99.9 3.5E-23 1.2E-27 147.5 10.5 78 49-127 2-79 (92)
8 1aab_A High mobility group pro 99.9 8.3E-24 2.8E-28 147.8 5.4 78 49-126 2-80 (83)
9 2cs1_A PMS1 protein homolog 1; 99.9 6.4E-23 2.2E-27 146.1 8.9 80 49-129 2-81 (92)
10 3nm9_A HMG-D, high mobility gr 99.9 1E-22 3.6E-27 139.0 9.3 72 52-126 1-72 (73)
11 1wgf_A Upstream binding factor 99.9 5.6E-24 1.9E-28 151.1 2.9 79 43-122 9-87 (90)
12 2e6o_A HMG box-containing prot 99.9 3.3E-23 1.1E-27 146.2 6.7 78 46-124 9-86 (87)
13 1hry_A Human SRY; DNA, DNA-bin 99.9 4.8E-23 1.6E-27 141.4 6.3 75 51-126 1-75 (76)
14 1wxl_A Single-strand recogniti 99.9 2E-22 6.9E-27 137.6 7.4 72 52-126 1-72 (73)
15 1ckt_A High mobility group 1 p 99.9 4E-22 1.4E-26 135.0 8.3 70 54-123 1-71 (71)
16 1j46_A SRY, sex-determining re 99.9 5.6E-22 1.9E-26 139.2 8.7 78 51-129 1-78 (85)
17 1wz6_A HMG-box transcription f 99.9 2.3E-22 7.7E-27 140.1 5.2 78 49-127 2-79 (82)
18 4a3n_A Transcription factor SO 99.9 3.5E-22 1.2E-26 135.1 5.4 71 53-124 1-71 (71)
19 4euw_A Transcription factor SO 99.9 9.6E-22 3.3E-26 143.7 7.7 81 47-128 22-102 (106)
20 1gt0_D Transcription factor SO 99.9 1.2E-21 4.3E-26 135.7 7.9 75 53-128 1-75 (80)
21 2gzk_A Sex-determining region 99.9 2.3E-21 7.7E-26 150.2 10.1 79 46-125 80-158 (159)
22 3f27_D Transcription factor SO 99.8 8.4E-22 2.9E-26 137.3 6.4 77 51-128 3-79 (83)
23 2lef_A LEF-1 HMG, protein (lym 99.8 2.4E-21 8.2E-26 136.2 8.7 76 53-129 1-76 (86)
24 3u2b_C Transcription factor SO 99.8 1.3E-21 4.3E-26 135.2 6.1 75 53-128 1-75 (79)
25 1i11_A Transcription factor SO 99.8 1.9E-21 6.5E-26 135.2 6.2 75 52-127 2-76 (81)
26 1v64_A Nucleolar transcription 99.8 4.1E-21 1.4E-25 140.9 8.3 78 46-128 8-86 (108)
27 2yrq_A High mobility group pro 99.8 8.1E-21 2.8E-25 149.2 10.2 80 46-126 93-172 (173)
28 1l8y_A Upstream binding factor 99.8 1.5E-20 5.1E-25 133.9 8.8 76 52-129 2-77 (91)
29 3fgh_A Transcription factor A, 99.8 8.3E-21 2.8E-25 127.4 6.8 66 53-123 1-66 (67)
30 2yrq_A High mobility group pro 99.8 5.1E-20 1.7E-24 144.6 9.0 84 45-128 6-90 (173)
31 1v63_A Nucleolar transcription 99.8 1E-19 3.5E-24 131.9 9.7 77 51-130 5-81 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 5.2E-20 1.8E-24 128.6 7.2 63 50-112 1-63 (81)
33 3tmm_A Transcription factor A, 99.8 4.3E-19 1.5E-23 146.3 7.1 80 48-128 35-114 (238)
34 3tq6_A Transcription factor A, 99.8 7.2E-19 2.5E-23 142.9 8.1 77 51-128 6-82 (214)
35 3tq6_A Transcription factor A, 99.8 6.4E-20 2.2E-24 149.1 1.2 87 46-137 106-192 (214)
36 2cto_A Novel protein; high mob 99.8 4.4E-19 1.5E-23 126.9 4.2 70 49-121 5-77 (93)
37 3tmm_A Transcription factor A, 99.7 1.2E-19 4E-24 149.7 1.0 86 46-136 138-223 (238)
38 2yuk_A Myeloid/lymphoid or mix 99.7 9.7E-20 3.3E-24 129.6 -0.6 69 46-118 14-83 (90)
39 2gzk_A Sex-determining region 99.7 4.5E-17 1.6E-21 125.9 6.8 75 52-127 2-76 (159)
40 2qgu_A Probable signal peptide 72.7 4 0.00014 32.0 4.4 45 83-127 74-120 (211)
41 4fp9_B Mterf domain-containing 35.0 7.4 0.00025 32.8 -0.2 6 113-118 264-269 (335)
42 4fp9_B Mterf domain-containing 29.0 12 0.0004 31.6 0.0 16 92-107 257-272 (335)
43 2ayu_A Nucleosome assembly pro 26.7 11 0.00039 32.8 -0.5 8 59-66 309-316 (417)
44 3mhp_C TIC62_peptide, ferredox 22.1 14 0.00046 19.5 -0.5 11 55-65 2-12 (26)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=2.3e-24 Score=156.49 Aligned_cols=85 Identities=35% Similarity=0.620 Sum_probs=80.2
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 030283 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (180)
Q Consensus 45 ~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 124 (180)
++++.+||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|.+|.++|..++++|..+|..|+
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999997 899999999999999999999999999999999999999999
Q ss_pred hhCCCC
Q 030283 125 KKQDGD 130 (180)
Q Consensus 125 ~~~~~~ 130 (180)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 2co9_A 87 ASLVSK 92 (102)
T ss_dssp HHHTSS
T ss_pred hhcccc
Confidence 988644
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=150.95 Aligned_cols=80 Identities=35% Similarity=0.594 Sum_probs=75.4
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 45 ~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
+++..+||++|+||+|||||||+++|..|+.+||+++ +|.+|+++||++|+.|++++|.+|.++|..++++|..+|..|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456789999999999999999999999999999997 379999999999999999999999999999999999999999
Q ss_pred h
Q 030283 124 N 124 (180)
Q Consensus 124 ~ 124 (180)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.90 E-value=6.6e-24 Score=153.44 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=78.4
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
+++.+||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999997 8999999999999999999999999999999999999999998
Q ss_pred hCC
Q 030283 126 KQD 128 (180)
Q Consensus 126 ~~~ 128 (180)
...
T Consensus 81 ~~P 83 (99)
T 1k99_A 81 DHP 83 (99)
T ss_dssp CCC
T ss_pred HCC
Confidence 765
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=7.3e-24 Score=145.90 Aligned_cols=76 Identities=47% Similarity=0.873 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
++||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++.+|..+|+.|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999997 8999999999999999999999999999999999999999975
No 5
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.89 E-value=4e-24 Score=153.75 Aligned_cols=84 Identities=38% Similarity=0.723 Sum_probs=78.1
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHH
Q 030283 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMN 121 (180)
Q Consensus 43 kk~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~ 121 (180)
++++++.+||++|+||+|||||||+++|..|+.+||+++ ++.+|+++||++|+.|++++|.+|.++|..++.+|..+|.
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999999985 3689999999999999999999999999999999999999
Q ss_pred HHhhh
Q 030283 122 AYNKK 126 (180)
Q Consensus 122 ~y~~~ 126 (180)
.|+.+
T Consensus 91 ~y~~~ 95 (97)
T 2lhj_A 91 EYAQR 95 (97)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.89 E-value=1.8e-24 Score=154.58 Aligned_cols=83 Identities=45% Similarity=0.773 Sum_probs=78.3
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 44 k~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
+++++.+||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|.+|.++|..++.+|..+|..|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSC-HHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhhC
Q 030283 124 NKKQ 127 (180)
Q Consensus 124 ~~~~ 127 (180)
..+.
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8764
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.89 E-value=3.5e-23 Score=147.48 Aligned_cols=78 Identities=31% Similarity=0.606 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 127 (180)
.+||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+...
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 579999999999999999999999999999997 899999999999999999999999999999999999999998865
No 8
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.89 E-value=8.3e-24 Score=147.79 Aligned_cols=78 Identities=32% Similarity=0.584 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
++||++|+||+|||||||+++|..|+.+||+++ +|.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999999999999986 368999999999999999999999999999999999999999765
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=146.14 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
..+|++||||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|..|..++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357999999999999999999999999999997 8999999999999999999999999999999999999999998875
Q ss_pred C
Q 030283 129 G 129 (180)
Q Consensus 129 ~ 129 (180)
.
T Consensus 81 ~ 81 (92)
T 2cs1_A 81 Q 81 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.88 E-value=1e-22 Score=139.02 Aligned_cols=72 Identities=36% Similarity=0.732 Sum_probs=69.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
.++||||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++ |.+|.++|..++++|..+|+.|+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999998 89999999999999998 9999999999999999999999875
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=5.6e-24 Score=151.14 Aligned_cols=79 Identities=30% Similarity=0.560 Sum_probs=72.7
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 030283 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNA 122 (180)
Q Consensus 43 kk~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~ 122 (180)
++++++.+||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|..
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 87 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGP 87 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSS
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999999999999999997 9999999999999999999999999999999999877643
No 12
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-23 Score=146.22 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=74.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 124 (180)
++..++|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+++.|+
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKD-NRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 356789999999999999999999999999999997 899999999999999999999999999999999999999886
No 13
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=4.8e-23 Score=141.43 Aligned_cols=75 Identities=32% Similarity=0.530 Sum_probs=70.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
||++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+.+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 6899999999999999999999999999997 89999999999999999999999999999999999999999753
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2e-22 Score=137.61 Aligned_cols=72 Identities=33% Similarity=0.693 Sum_probs=69.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.| ++|.+|.++|..++.+|..+|..|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999997 899999999999999 889999999999999999999999864
No 15
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.87 E-value=4e-22 Score=135.00 Aligned_cols=70 Identities=31% Similarity=0.607 Sum_probs=67.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 54 KPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 54 ~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
+||||+|||||||+++|..|+.+||+++ +|.+|+++||++|++|++++|.+|.++|..++.+|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999997 369999999999999999999999999999999999999877
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.86 E-value=5.6e-22 Score=139.22 Aligned_cols=78 Identities=31% Similarity=0.503 Sum_probs=74.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~ 129 (180)
.|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|+.|+.+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 3799999999999999999999999999997 89999999999999999999999999999999999999999987653
No 17
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=2.3e-22 Score=140.15 Aligned_cols=78 Identities=23% Similarity=0.452 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 127 (180)
..++++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+.+.
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 357899999999999999999999999999997 899999999999999999999999999999999999999998754
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.85 E-value=3.5e-22 Score=135.05 Aligned_cols=71 Identities=30% Similarity=0.581 Sum_probs=63.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 124 (180)
|.|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++.+|..+|+.|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57999999999999999999999999998 899999999999999999999999999999999999999885
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.85 E-value=9.6e-22 Score=143.68 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=70.9
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 47 k~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
...+++++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|+.|+.+
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 44678999999999999999999999999999997 89999999999999999999999999999999999999999876
Q ss_pred CC
Q 030283 127 QD 128 (180)
Q Consensus 127 ~~ 128 (180)
..
T Consensus 101 Pr 102 (106)
T 4euw_A 101 PR 102 (106)
T ss_dssp --
T ss_pred CC
Confidence 54
No 20
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.85 E-value=1.2e-21 Score=135.69 Aligned_cols=75 Identities=31% Similarity=0.556 Sum_probs=71.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++.+|..+|+.|+....
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~ 75 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCC
Confidence 57999999999999999999999999997 8999999999999999999999999999999999999999987654
No 21
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.85 E-value=2.3e-21 Score=150.22 Aligned_cols=79 Identities=48% Similarity=0.865 Sum_probs=75.7
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
+++.++|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|.+|..+|..++.+|..+|.+|++
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999997 9999999999999999999999999999999999999999985
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.85 E-value=8.4e-22 Score=137.33 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=70.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
.++.|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+.+..
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~ 79 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPR 79 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCc
Confidence 4678999999999999999999999999998 8999999999999999999999999999999999999999987643
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=2.4e-21 Score=136.15 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=72.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~ 129 (180)
+.|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++++|..+|+.|..+...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~ 76 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKE-SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 47999999999999999999999999997 89999999999999999999999999999999999999999977653
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.3e-21 Score=135.16 Aligned_cols=75 Identities=24% Similarity=0.484 Sum_probs=71.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
|+|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|+.|+.+..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Pr 75 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPR 75 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCC
Confidence 68999999999999999999999999997 8999999999999999999999999999999999999999987643
No 25
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.9e-21 Score=135.16 Aligned_cols=75 Identities=29% Similarity=0.514 Sum_probs=68.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 127 (180)
+++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|+.|+.+.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 76 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKP 76 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeecc
Confidence 578999999999999999999999999997 899999999999999999999999999999999999999998754
No 26
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=4.1e-21 Score=140.92 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=72.8
Q ss_pred cccCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 030283 46 KKAKKDPNKP-KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYN 124 (180)
Q Consensus 46 kk~~kdp~~P-KrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~ 124 (180)
.++.++|++| |||+|||||||+++|..|+ +++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|..|.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~-~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999 9999999999999999886 675 899999999999999999999999999999999999999999
Q ss_pred hhCC
Q 030283 125 KKQD 128 (180)
Q Consensus 125 ~~~~ 128 (180)
..+.
T Consensus 83 ~~~~ 86 (108)
T 1v64_A 83 ESLP 86 (108)
T ss_dssp HHSC
T ss_pred hhCC
Confidence 9875
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=149.18 Aligned_cols=80 Identities=49% Similarity=0.868 Sum_probs=76.1
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
+++.++|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|.+|..+|..++.+|..+|..|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999999999997 9999999999999999999999999999999999999999987
Q ss_pred h
Q 030283 126 K 126 (180)
Q Consensus 126 ~ 126 (180)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 4
No 28
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.83 E-value=1.5e-20 Score=133.90 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~ 129 (180)
.+.|+||+|||+||++++|..++..||+ . +.+|++.||++|+.|++.+|.+|+.+|..++.+|..+|..|+.....
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~-~-~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN-D-RVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS-T-HHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3689999999999999999999999999 4 89999999999999999999999999999999999999999887653
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=127.41 Aligned_cols=66 Identities=30% Similarity=0.488 Sum_probs=62.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
|+||||+|||+|||+++|..|+..| +.+|+++||++|+.||+++|.+|.++|..++.+|..+|..|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999997665 46899999999999999999999999999999999999998
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.1e-20 Score=144.62 Aligned_cols=84 Identities=30% Similarity=0.550 Sum_probs=77.2
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 45 ~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
.++.++||++|+||+|||||||+++|..|+.+||+++ ++.+|+++||++|+.|++++|.+|.++|..++.+|..+|..|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999952 489999999999999999999999999999999999999999
Q ss_pred hhhCC
Q 030283 124 NKKQD 128 (180)
Q Consensus 124 ~~~~~ 128 (180)
.....
T Consensus 86 ~~~~~ 90 (173)
T 2yrq_A 86 IPPKG 90 (173)
T ss_dssp CCCCC
T ss_pred hhhhh
Confidence 87543
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=1e-19 Score=131.93 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGD 130 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~~ 130 (180)
..++||||+|||||||++++. ...+++++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...+...
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~-~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLP-LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 467899999999999999964 23345565 899999999999999999999999999999999999999999988644
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=128.60 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=59.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHH
Q 030283 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKL 112 (180)
Q Consensus 50 kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~ 112 (180)
.++++||||+|||||||+++|..|+.+||+++++.+|+++||++|+.|++++|.+|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999954899999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=146.30 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=76.1
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 030283 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 48 ~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 127 (180)
...+|++||||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999999999999999999999998 999999999999999999999999999999999999999998766
Q ss_pred C
Q 030283 128 D 128 (180)
Q Consensus 128 ~ 128 (180)
.
T Consensus 114 ~ 114 (238)
T 3tmm_A 114 T 114 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=142.88 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
.|++|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...+.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~t 82 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 82 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 3789999999999999999999999999998 9999999999999999999999999999999999999999987664
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.76 E-value=6.4e-20 Score=149.11 Aligned_cols=87 Identities=26% Similarity=0.352 Sum_probs=75.4
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
++..++|++|+||+|||||||+++|..|+..| +.+|+++||++|++|++++|.+|..+|..++.+|..+|.+|..
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999886544 5589999999999999999999999999999999999999999
Q ss_pred hCCCCccccccc
Q 030283 126 KQDGDEASDKSK 137 (180)
Q Consensus 126 ~~~~~~~s~~~~ 137 (180)
++......+.+.
T Consensus 181 ~~~~~~~~dlvr 192 (214)
T 3tq6_A 181 QMIEVGRKDLLR 192 (214)
T ss_dssp HHHHTTBGGGSC
T ss_pred hCcccccccccc
Confidence 986544444433
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-19 Score=126.95 Aligned_cols=70 Identities=20% Similarity=0.391 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HhhhcCCCchhhhhHHHHHHHHHHHHHHHHH
Q 030283 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA---GGKWKSMSPAEKAPYESKAEKLKSEYGKKMN 121 (180)
Q Consensus 49 ~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l---~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~ 121 (180)
-..+++||||+|||||||+++|..|+.+ +++ +.+|+++| |++|+.|++++|.+|+++|..++++|.+++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~-~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLP-VARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCC-CSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999988 675 78999999 9999999999999999999999999998763
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.2e-19 Score=149.70 Aligned_cols=86 Identities=27% Similarity=0.346 Sum_probs=74.9
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
++..++|++|+||+|||||||+++|..|+..| +.+|+++||++|++|++++|.+|..+|..++++|..+|.+|+.
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 212 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS-----HHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999998886554 4589999999999999999999999999999999999999999
Q ss_pred hCCCCcccccc
Q 030283 126 KQDGDEASDKS 136 (180)
Q Consensus 126 ~~~~~~~s~~~ 136 (180)
++........+
T Consensus 213 k~~~~~~~dlv 223 (238)
T 3tmm_A 213 QMIEVGRKDLL 223 (238)
T ss_dssp HHHHTTCGGGS
T ss_pred hCccccccchh
Confidence 98644444333
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-20 Score=129.57 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=61.8
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHH
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGK 118 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~ 118 (180)
.+..+|||+|+||+|||||||+++|..|+.+||+++ .+.+|+ ++|+.|++++|.+|+.+|..++++|..
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999999999984 145665 999999999999999999999999875
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.68 E-value=4.5e-17 Score=125.91 Aligned_cols=75 Identities=32% Similarity=0.549 Sum_probs=71.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhC
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~ 127 (180)
|++|+||+||||||++..|..|+.+||+++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|..|....
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k 76 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRK 76 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccc
Confidence 689999999999999999999999999997 899999999999999999999999999999999999999997653
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=72.69 E-value=4 Score=32.04 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHH-HHHhhhcCCCchhhhhHHHHHHH-HHHHHHHHHHHHhhhC
Q 030283 83 VSAVGK-AAGGKWKSMSPAEKAPYESKAEK-LKSEYGKKMNAYNKKQ 127 (180)
Q Consensus 83 ~~eisk-~l~e~Wk~Ls~eeK~~Y~~~A~~-~k~~y~~e~~~y~~~~ 127 (180)
|..|++ .||..|+.++++++..|...... ....|-..+..|....
T Consensus 74 ~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 74 FKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp HHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred HHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 666665 47999999999999999987666 5567888898887543
No 41
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=34.99 E-value=7.4 Score=32.84 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.2
Q ss_pred HHHHHH
Q 030283 113 KSEYGK 118 (180)
Q Consensus 113 k~~y~~ 118 (180)
.+.|..
T Consensus 264 ~eey~~ 269 (335)
T 4fp9_B 264 VEEFQV 269 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 42
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=29.04 E-value=12 Score=31.61 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=7.5
Q ss_pred hhhcCCCchhhhhHHH
Q 030283 92 GKWKSMSPAEKAPYES 107 (180)
Q Consensus 92 e~Wk~Ls~eeK~~Y~~ 107 (180)
..|...+.++=..|..
T Consensus 257 ~~vA~~s~eey~~F~k 272 (335)
T 4fp9_B 257 ARTACTSVEEFQVFKK 272 (335)
T ss_dssp HHTSCCCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHH
Confidence 3455555554444443
No 43
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=26.67 E-value=11 Score=32.81 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=3.9
Q ss_pred CChHHHHH
Q 030283 59 PSAFFVFL 66 (180)
Q Consensus 59 ~sAy~lF~ 66 (180)
..+||-|+
T Consensus 309 ~~SFFnfF 316 (417)
T 2ayu_A 309 IESFFNFF 316 (417)
T ss_dssp CCCGGGGG
T ss_pred CCCceeec
Confidence 34455554
No 44
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=22.13 E-value=14 Score=19.54 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.0
Q ss_pred CCCCCChHHHH
Q 030283 55 PKRPPSAFFVF 65 (180)
Q Consensus 55 PKrP~sAy~lF 65 (180)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 45788888766
Done!