Query 030283
Match_columns 180
No_of_seqs 179 out of 1215
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030283.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030283hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lwma_ a.21.1.1 (A:) NHP6a {B 99.9 8.7E-24 6.3E-28 149.4 10.8 83 44-127 10-92 (93)
2 d1hsma_ a.21.1.1 (A:) High mob 99.9 5.1E-23 3.7E-27 141.1 9.1 75 53-128 1-75 (79)
3 d1k99a_ a.21.1.1 (A:) Nucleola 99.9 1.8E-22 1.3E-26 141.7 9.1 83 46-129 2-84 (91)
4 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 99.9 2.1E-22 1.5E-26 138.8 7.9 75 53-128 1-75 (80)
5 d1j46a_ a.21.1.1 (A:) SRY {Hum 99.9 5E-22 3.6E-26 138.1 8.3 75 53-128 3-77 (85)
6 d1qrva_ a.21.1.1 (A:) HMG-D {D 99.8 1.5E-21 1.1E-25 131.9 9.2 72 52-126 1-72 (73)
7 d1ckta_ a.21.1.1 (A:) High mob 99.8 1.7E-21 1.2E-25 130.8 8.3 70 54-123 1-71 (71)
8 d1i11a_ a.21.1.1 (A:) Sox-5 {M 99.8 6.2E-22 4.5E-26 132.9 6.1 69 54-123 2-70 (70)
9 d2lefa_ a.21.1.1 (A:) Lymphoid 99.8 7.5E-21 5.5E-25 132.3 8.6 75 54-129 2-76 (86)
10 d1wgfa_ a.21.1.1 (A:) Nucleola 99.8 1E-20 7.5E-25 132.4 6.8 75 44-119 10-84 (90)
11 d1v63a_ a.21.1.1 (A:) Nucleola 99.8 1.5E-19 1.1E-23 128.8 7.5 77 51-130 5-81 (101)
12 d1v64a_ a.21.1.1 (A:) Nucleola 99.8 3.4E-19 2.4E-23 128.7 9.1 78 46-128 9-86 (108)
13 d1l8ya_ a.21.1.1 (A:) Nucleola 96.4 0.013 9.6E-07 37.7 8.5 73 54-128 3-75 (84)
14 d1kxpd3 a.126.1.1 (D:405-473) 40.1 27 0.002 21.1 4.7 33 60-93 9-41 (69)
No 1
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.90 E-value=8.7e-24 Score=149.43 Aligned_cols=83 Identities=45% Similarity=0.773 Sum_probs=78.3
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 44 k~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
+.++..++|++|+||+|||||||+++|..|+.+||+++ +.+|++.||.+|++||+++|.+|.++|..++.+|..+|..|
T Consensus 10 ~~~k~~k~p~~PKrP~saf~lF~~e~r~~ik~~~p~~~-~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e~~~y 88 (93)
T d1lwma_ 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCSCCCCSSCCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456779999999999999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred hhhC
Q 030283 124 NKKQ 127 (180)
Q Consensus 124 ~~~~ 127 (180)
+.++
T Consensus 89 ~~~l 92 (93)
T d1lwma_ 89 NATL 92 (93)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9875
No 2
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=99.88 E-value=5.1e-23 Score=141.12 Aligned_cols=75 Identities=45% Similarity=0.843 Sum_probs=72.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
|+||||+|||||||+++|..|+.+||+++ +.+|+++||.+|+.||+++|.+|..+|..++.+|..+|..|+.+..
T Consensus 1 NaPKrP~say~~f~~~~r~~i~~~~p~~~-~~ei~k~~~~~W~~ls~~eK~~y~~~a~~~k~~Y~~e~~~y~~k~~ 75 (79)
T d1hsma_ 1 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 75 (79)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHCTTCC-TTTHHHHHHHHHHTSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 78999999999999999999999999997 8999999999999999999999999999999999999999998764
No 3
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=1.8e-22 Score=141.71 Aligned_cols=83 Identities=25% Similarity=0.487 Sum_probs=79.0
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
++.+++|+.|+||+|||||||+++|..|+.+||+++ +.+|+++||++|+.||+++|.+|.++|..++.+|..+|..|..
T Consensus 2 kk~kk~p~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~ev~k~l~~~W~~ls~~eK~~y~~~a~~~~~~y~~~~~~y~~ 80 (91)
T d1k99a_ 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (91)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999997 8999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 030283 126 KQDG 129 (180)
Q Consensus 126 ~~~~ 129 (180)
....
T Consensus 81 ~~pe 84 (91)
T d1k99a_ 81 DHPD 84 (91)
T ss_dssp CCCC
T ss_pred HCcc
Confidence 8653
No 4
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.86 E-value=2.1e-22 Score=138.79 Aligned_cols=75 Identities=31% Similarity=0.556 Sum_probs=71.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
+.|+||+|||||||+++|..|+.+||+++ +.+|+++||.+|++|++++|.+|..+|..++++|..+|+.|+....
T Consensus 1 ~kiKRP~nAy~lF~~~~r~~~~~~~p~~~-~~eisk~~g~~W~~l~~eeK~~y~~~A~~~k~~y~~~~p~Yk~~p~ 75 (80)
T d1gt0d_ 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR 75 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHCcCCHHHHHHHHHHHHHHHHHHHHHCccccCCCC
Confidence 57999999999999999999999999997 8999999999999999999999999999999999999999987653
No 5
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=5e-22 Score=138.14 Aligned_cols=75 Identities=32% Similarity=0.541 Sum_probs=72.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 53 ~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
|+||||+|||||||+++|..|+.+||+++ +.+|+++||.+|++|++++|.+|+++|..++.+|..+|+.|+.+..
T Consensus 3 ~~iKRP~nay~lF~~~~r~~i~~~~p~~~-~~eisk~ig~~W~~L~~eeK~~y~~~A~~~k~~y~~~~~~yk~~p~ 77 (85)
T d1j46a_ 3 DRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPR 77 (85)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhHHhccCCC
Confidence 78999999999999999999999999997 9999999999999999999999999999999999999999987653
No 6
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Probab=99.85 E-value=1.5e-21 Score=131.94 Aligned_cols=72 Identities=36% Similarity=0.765 Sum_probs=68.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 030283 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK 126 (180)
Q Consensus 52 p~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 126 (180)
.|+||||+|||||||+++|..|+.+||+++ +.+|+++||.+|+.|+ +|.+|..+|..++.+|..+|..|+.+
T Consensus 1 sn~PKrP~say~lf~~~~r~~~k~~~p~~~-~~eisk~l~~~Wk~~~--eK~~y~~~a~~~k~~y~~~~~~y~~~ 72 (73)
T d1qrva_ 1 SDKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHTSTTCC-HHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccCCCCCcHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhcChh--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999997 8999999999999886 49999999999999999999999875
No 7
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.84 E-value=1.7e-21 Score=130.76 Aligned_cols=70 Identities=31% Similarity=0.607 Sum_probs=66.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 54 KPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 54 ~PKrP~sAy~lF~~e~r~~ik~e~P~~~-~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
.||||+|||||||+++|..|+.+||+.. ++.+|+++||.+|+.||+++|.+|.++|..++.+|..+|..|
T Consensus 1 KPKrP~say~~f~~~~r~~~k~~~p~~~~~~~ei~k~~~~~Wk~ls~~eK~~y~~~a~~~k~~y~~e~~~Y 71 (71)
T d1ckta_ 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999754 478999999999999999999999999999999999999877
No 8
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.84 E-value=6.2e-22 Score=132.92 Aligned_cols=69 Identities=30% Similarity=0.553 Sum_probs=65.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 030283 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAY 123 (180)
Q Consensus 54 ~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y 123 (180)
++|||+|||||||+++|..|+.+||+++ +.+|+++||++|++|++++|.+|.++|..++.+|..++++|
T Consensus 2 ~iKRP~nay~lf~~~~r~~i~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~Y 70 (70)
T d1i11a_ 2 HIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70 (70)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 5799999999999999999999999998 89999999999999999999999999999999999887765
No 9
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.83 E-value=7.5e-21 Score=132.35 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=71.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 030283 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG 129 (180)
Q Consensus 54 ~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~ 129 (180)
+.+||+|||||||+++|..|..+||+++ +.+|+++||.+|++||+++|.+|.++|..++++|..+++.|+.....
T Consensus 2 hikRP~naf~lF~~~~r~~~~~~~P~~~-~~~Isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~~~~~~p~yk~~~~~ 76 (86)
T d2lefa_ 2 HIKKPLNAFMLYMKEMRANVVAESTLKE-SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 6799999999999999999999999997 89999999999999999999999999999999999999999876543
No 10
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=1e-20 Score=132.35 Aligned_cols=75 Identities=32% Similarity=0.595 Sum_probs=68.9
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHH
Q 030283 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKK 119 (180)
Q Consensus 44 k~kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e 119 (180)
..+....+++.|+||+|||||||+++|..|+.+||++. +.+|+++|+.+|+.|++++|.+|.++|..++.+|..+
T Consensus 10 ~~~~~~~~~~~PKrP~say~lF~~e~r~~~~~~~p~~~-~~ei~k~l~~~W~~Ls~~eK~~Y~~~A~~~k~~y~~~ 84 (90)
T d1wgfa_ 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCC
T ss_pred CccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999997 8999999999999999999999999999998887643
No 11
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.78 E-value=1.5e-19 Score=128.80 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=69.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 030283 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDGD 130 (180)
Q Consensus 51 dp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~~~ 130 (180)
..++||||+|||||||+++|..++..| ++ +.+|+++||++|+.|++++|.+|.++|..++.+|..+|..|...+...
T Consensus 5 ~~~p~KrP~~ay~~F~~e~r~~~~~~~--~~-~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e~~~y~~~~~~~ 81 (101)
T d1v63a_ 5 SSGPKKPPMNGYQKFSQELLSNGELNH--LP-LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHHHCTTTT--SC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcC--CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 456889999999999999999986555 44 789999999999999999999999999999999999999999987543
No 12
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.78 E-value=3.4e-19 Score=128.66 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=70.9
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030283 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNK 125 (180)
Q Consensus 46 kk~~kdp~~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~ 125 (180)
++.+.++.+||+|+|||||||+++|.. +|+++ +.+|+++||.+|+.|++++|.+|..+|..++.+|..+|..|..
T Consensus 9 ~k~~~~~~p~K~P~~ay~lF~~~~r~~----~~~~~-~~e~~k~ig~~W~~Ls~~eK~~Y~~~a~~~k~~Y~~~~~~y~~ 83 (108)
T d1v64a_ 9 LKDKFDGRPTKPPPNSYSLYCAELMAN----MKDVP-STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp SSCCTTTSCCCCCSSHHHHHHHHHHHH----CTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCcHHHHHHHHHHHH----ccCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345577888899999999999998864 57886 8999999999999999999999999999999999999999998
Q ss_pred hCC
Q 030283 126 KQD 128 (180)
Q Consensus 126 ~~~ 128 (180)
++.
T Consensus 84 ~~~ 86 (108)
T d1v64a_ 84 SLP 86 (108)
T ss_dssp HSC
T ss_pred hCC
Confidence 875
No 13
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.40 E-value=0.013 Score=37.73 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhCC
Q 030283 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQD 128 (180)
Q Consensus 54 ~PKrP~sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~Wk~Ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~~~ 128 (180)
.|-.|.+|-.+|.+.....+...+-+- ..-..+.+-..|++|...++-+|...|.++..+|+.++-+-+.-..
T Consensus 3 lpetpktaeeiWQqsvIgdYlA~fk~D--R~KaqkaMeatW~~meKkEki~wikkaaedqkryerel~emr~~~a 75 (84)
T d1l8ya_ 3 LPESPKRAEEIWQQSVIGDYLARFKND--RVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPA 75 (84)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTST--HHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 577889999999999988887766443 2345566777899999999999999999999999998876655443
No 14
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.10 E-value=27 Score=21.11 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 030283 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGK 93 (180)
Q Consensus 60 sAy~lF~~e~r~~ik~e~P~~~~~~eisk~l~e~ 93 (180)
+.|.-|.......++...|+++ ..+|..++..+
T Consensus 9 ~tFte~kkkL~e~lr~k~P~as-~~~l~~mVekr 41 (69)
T d1kxpd3 9 NTFTEYKKKLAERLKAKLPDAT-PKELAKLVNKR 41 (69)
T ss_dssp SCHHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHH
Confidence 5688899999999999999997 67777665543
Done!