Query 030284
Match_columns 180
No_of_seqs 111 out of 716
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13194 pyrrolidone-carboxyla 100.0 2.1E-41 4.5E-46 276.9 18.4 159 9-179 32-206 (208)
2 PF01470 Peptidase_C15: Pyrogl 100.0 2.3E-42 4.9E-47 281.5 12.3 158 9-178 32-201 (202)
3 PRK13196 pyrrolidone-carboxyla 100.0 3.7E-40 8.1E-45 270.2 18.4 160 9-180 33-211 (211)
4 PRK13193 pyrrolidone-carboxyla 100.0 3.3E-40 7.2E-45 270.0 17.2 141 9-161 32-172 (209)
5 PRK13195 pyrrolidone-carboxyla 100.0 6.2E-40 1.3E-44 270.1 17.8 157 9-177 33-206 (222)
6 PRK13197 pyrrolidone-carboxyla 100.0 1E-39 2.2E-44 268.3 17.6 158 9-178 33-202 (215)
7 TIGR00504 pyro_pdase pyrogluta 100.0 3.6E-39 7.8E-44 264.5 18.0 156 10-177 31-198 (212)
8 cd00501 Peptidase_C15 Pyroglut 100.0 3E-37 6.6E-42 249.4 13.5 140 9-160 32-173 (194)
9 COG2039 Pcp Pyrrolidone-carbox 100.0 8.1E-37 1.8E-41 243.8 13.9 158 9-178 32-201 (207)
10 KOG4755 Predicted pyroglutamyl 99.9 6.2E-26 1.3E-30 184.4 12.4 142 30-180 62-213 (213)
11 PF06162 DUF976: Caenorhabditi 99.6 1E-15 2.2E-20 119.8 8.2 96 26-125 62-166 (166)
12 PRK10667 Hha toxicity attenuat 66.5 5.9 0.00013 29.8 2.6 43 128-178 15-57 (122)
13 PF10757 YbaJ: Biofilm formati 61.1 8.6 0.00019 29.0 2.6 43 128-178 15-57 (122)
14 PF01261 AP_endonuc_2: Xylose 57.1 85 0.0018 23.9 8.1 74 105-178 28-119 (213)
15 PF02662 FlpD: Methyl-viologen 56.2 18 0.00038 27.2 3.7 40 128-167 4-47 (124)
16 PRK13364 protocatechuate 4,5-d 42.3 69 0.0015 27.4 5.6 47 107-156 102-151 (278)
17 cd07366 3MGA_Dioxygenase Subun 41.1 2.5E+02 0.0054 24.7 11.4 41 15-56 56-96 (328)
18 PF10662 PduV-EutP: Ethanolami 36.2 39 0.00084 26.2 2.9 21 124-144 42-62 (143)
19 KOG3424 40S ribosomal protein 35.2 50 0.0011 25.1 3.2 40 16-56 22-61 (132)
20 PF02900 LigB: Catalytic LigB 35.1 1.6E+02 0.0035 24.4 6.7 133 27-173 23-169 (272)
21 COG3540 PhoD Phosphodiesterase 33.2 33 0.00071 32.0 2.3 19 29-55 159-177 (522)
22 PF13107 DUF3964: Protein of u 30.3 31 0.00066 25.2 1.3 19 140-158 77-95 (109)
23 PLN03069 magnesiumprotoporphyr 29.3 40 0.00087 34.8 2.4 48 29-85 593-641 (1220)
24 TIGR03764 ICE_PFGI_1_parB inte 27.3 1.3E+02 0.0027 25.8 4.7 53 105-157 30-89 (258)
25 PRK13405 bchH magnesium chelat 27.0 46 0.001 34.4 2.4 48 29-85 586-634 (1209)
26 TIGR02025 BchH magnesium chela 26.8 47 0.001 34.4 2.4 48 29-85 566-614 (1216)
27 PRK14697 bifunctional 5'-methy 26.1 45 0.00096 27.4 1.8 20 41-60 63-82 (233)
28 PRK06714 S-adenosylhomocystein 25.9 45 0.00097 27.7 1.8 20 41-60 63-82 (236)
29 PRK12493 magnesium chelatase s 25.4 52 0.0011 34.3 2.5 48 29-85 580-628 (1310)
30 PF10330 Stb3: Putative Sin3 b 25.2 82 0.0018 22.7 2.7 25 150-174 30-54 (92)
31 PRK13366 protocatechuate 4,5-d 25.2 2.3E+02 0.0049 24.3 6.0 121 43-176 45-177 (284)
32 cd07949 PCA_45_Doxase_B_like_1 24.1 2.3E+02 0.0051 24.0 5.9 66 107-175 102-175 (276)
33 PRK13373 putative dioxygenase; 23.8 2.2E+02 0.0049 25.3 5.8 18 107-124 104-121 (344)
34 PTZ00071 40S ribosomal protein 23.8 1.2E+02 0.0025 23.4 3.5 40 18-57 25-64 (132)
35 cd07378 MPP_ACP5 Homo sapiens 23.5 59 0.0013 26.7 2.1 24 32-55 18-41 (277)
36 TIGR01704 MTA/SAH-Nsdase 5'-me 23.1 54 0.0012 26.7 1.8 19 42-60 62-80 (228)
37 PRK01178 rps24e 30S ribosomal 22.5 1.2E+02 0.0026 22.0 3.3 39 18-57 20-58 (99)
38 PRK13363 protocatechuate 4,5-d 22.3 5.4E+02 0.012 22.6 12.0 41 16-57 59-99 (335)
39 PRK07077 hypothetical protein; 21.8 1.4E+02 0.003 25.0 4.0 37 19-59 30-66 (238)
40 PRK12327 nusA transcription el 21.2 3.6E+02 0.0077 24.1 6.6 126 7-158 172-313 (362)
41 PRK08236 hypothetical protein; 20.4 61 0.0013 26.5 1.5 15 46-60 53-67 (212)
42 PRK02220 4-oxalocrotonate taut 20.4 1.6E+02 0.0036 18.3 3.3 29 151-179 3-31 (61)
43 PF02514 CobN-Mg_chel: CobN/Ma 20.3 91 0.002 31.9 3.0 22 30-58 416-437 (1098)
No 1
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=2.1e-41 Score=276.94 Aligned_cols=159 Identities=28% Similarity=0.401 Sum_probs=137.1
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
+|..+ .+.+|||+|.++.+.+.+.+++ ++||+|||+|++++++.|+||++|+|.+++++||++|++|.+++
T Consensus 32 ~~~~v-~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~ 102 (208)
T PRK13194 32 GDAKV-FGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEP 102 (208)
T ss_pred CCcEE-EEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCc
Confidence 55655 5889999998887777666666 78999999999999999999999999989999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC--------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS-------- 158 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~-------- 158 (180)
|+. +||.. +.|++|+++++++|++.|+|+++|+|||+|||||+||+|||+.+++ +.+++|||||...
T Consensus 103 i~~-~gp~~--y~ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~ 179 (208)
T PRK13194 103 IVE-GAPAA--YFATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIG 179 (208)
T ss_pred ccC-CCCCc--ccCCCCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcc
Confidence 986 67765 5699999999999999999999999999999999999999998654 3679999999533
Q ss_pred ------CCChHHHHHHHHHHHHHHHhh
Q 030284 159 ------TIDEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 159 ------~~~~e~~~~~~~~lI~~ia~~ 179 (180)
.++-+.+.+.+...|+.+..+
T Consensus 180 ~~~~~p~~~l~~~~~~~~~~~~~~~~~ 206 (208)
T PRK13194 180 KGKNTPSMCLEMEIEAVKIAIRVALEE 206 (208)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 244466777788888887764
No 2
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=100.00 E-value=2.3e-42 Score=281.55 Aligned_cols=158 Identities=35% Similarity=0.557 Sum_probs=112.0
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|+.+ .+.+|||+|.++.+.+- ++|++++||+|||+|++++++.|+||++|+|.+++++||++|++|.+++
T Consensus 32 ~~~~v-~~~~lPV~~~~~~~~l~--------~~l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~ 102 (202)
T PF01470_consen 32 GGAEV-HTRELPVSYEKAFEALE--------ELLEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEP 102 (202)
T ss_dssp TTEEE-EEEEE-SSHHHHHHHHH--------HHHHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-
T ss_pred CCceE-EEEEecCchHhHHHHHH--------HHHHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCcc
Confidence 56766 58889998766555443 3444479999999999999999999999999988999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~------- 159 (180)
|+. +||.. +.|+||+++++++|+++|+|+++|+|||+|||||+||+||++.+++ +.+++|||||++++
T Consensus 103 i~~-~gp~~--~~t~lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~ 179 (202)
T PF01470_consen 103 IVP-DGPEA--YFTTLPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPG 179 (202)
T ss_dssp SST-TS-SE--EE-BS-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTT
T ss_pred ccC-CCccc--eecCCCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCC
Confidence 986 68765 5699999999999999999999999999999999999999998754 57899999998754
Q ss_pred ---CChHHHHHHHHHHHHHHHh
Q 030284 160 ---IDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 160 ---~~~e~~~~~~~~lI~~ia~ 178 (180)
++-+.+.+.+...|+.+.+
T Consensus 180 ~~s~~l~~~~~a~~~~~~~~~~ 201 (202)
T PF01470_consen 180 APSMSLETMVRAVRAAIEAIVD 201 (202)
T ss_dssp C-B--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 2335677888888888775
No 3
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=3.7e-40 Score=270.17 Aligned_cols=160 Identities=26% Similarity=0.383 Sum_probs=137.8
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
+|..+ .+.+|||+|.++.+.+.+.+++ ++||+|||+|++++++.|+||++|+|.+++++||++|++|.+.+
T Consensus 33 ~~~~v-~~~~LPV~~~~~~~~l~~~~~~--------~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~ 103 (211)
T PRK13196 33 GALRV-HSALLPVEPRAAMAALSRLLDE--------LQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTP 103 (211)
T ss_pred CCcEE-EEEEeCCChhHHHHHHHHHHHH--------hCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCC
Confidence 45555 5889999998877776666666 89999999999999999999999999989999999999999999
Q ss_pred e--ecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc---CCceEEEEcCCC------
Q 030284 89 V--VLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLF------ 157 (180)
Q Consensus 89 i--~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~---~~~~~FvHVP~~------ 157 (180)
| .. +|+.. +.|+||+++++++++++|+|+++|+|||+|||||+||+||++.+++ +.+++|||||++
T Consensus 104 i~~~~-~gp~~--y~stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP~~~~~~~~ 180 (211)
T PRK13196 104 VCTEP-DAPAA--YLSTLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVPANAQVALA 180 (211)
T ss_pred cccCC-CCccc--eecCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcCCCHHHhhh
Confidence 9 64 67654 6799999999999999999999999999999999999999997544 367999999977
Q ss_pred --------CCCChHHHHHHHHHHHHHHHhhC
Q 030284 158 --------STIDEDTQMQFVATLFEAVASTC 180 (180)
Q Consensus 158 --------~~~~~e~~~~~~~~lI~~ia~~~ 180 (180)
..++.|.+.+.+...|+.+.+++
T Consensus 181 ~~~~~~~~p~m~~~~~~~~v~~~i~~~~~~~ 211 (211)
T PRK13196 181 VAGDRPPLPYLPQEEITRAVRVAAETMAGQN 211 (211)
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 22455777888999999888764
No 4
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=3.3e-40 Score=270.03 Aligned_cols=141 Identities=20% Similarity=0.276 Sum_probs=123.9
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|..+ ...+|||+|..+.+.+.+.+++ ++||+|||+|++++++.|++|++|+|.+++++||++|++|.+++
T Consensus 32 ~~~~v-~~~~LPv~~~~~~~~l~~~~~~--------~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~ 102 (209)
T PRK13193 32 LKEEV-KGVILPVEYEKIEDLIVTKIRE--------MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEK 102 (209)
T ss_pred CCceE-EEEEeCCcHHHHHHHHHHHHHH--------HCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCc
Confidence 34455 4678888888776666555555 79999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhcCCceEEEEcCCCCCCC
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID 161 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~~~~ 161 (180)
|+. +||.. +.|+||+++++++|+++|+|+++|+|||+|||||+||+||++.++.+.+++|||||++++..
T Consensus 103 I~~-~gp~~--~~t~lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~~~~~~~~~a~FIHVP~~~~~~ 172 (209)
T PRK13193 103 IDP-LGQDG--IFTNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPLHESYA 172 (209)
T ss_pred ccC-CCcce--eecCCCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHHHHhccCCeeEEEEeCCchhhh
Confidence 986 67764 67999999999999999999999999999999999999999986556789999999887654
No 5
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=6.2e-40 Score=270.09 Aligned_cols=157 Identities=24% Similarity=0.312 Sum_probs=134.9
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCC---CCCCCCCCCCC
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATF---LCPDQLGWQPQ 85 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~---~~pD~~G~~p~ 85 (180)
+|..+ .+.+|||+|.++.+.+.+.+++ ++||+|||+|++++++.|++||+|+|.+++ ++||++|++|.
T Consensus 33 ~~~~v-~~~~lPv~f~~~~~~l~~~i~~--------~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~ 103 (222)
T PRK13195 33 AGATV-ISRIVPNTFFESIAAAQQAIAE--------IEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLV 103 (222)
T ss_pred CCeEE-EEEEeCeEehHHHHHHHHHHHH--------HCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCC
Confidence 56666 4789999999988888777776 799999999999999999999999998765 49999999999
Q ss_pred CCceecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC----
Q 030284 86 QIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST---- 159 (180)
Q Consensus 86 ~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~---- 159 (180)
+++|+. +||.. +.|+||+++++++|+++|+|+++|+|||+|+|||+||+|||+.++. +.+++|||||.+++
T Consensus 104 ~~~I~~-~gp~a--y~stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~~~~~~~~~~~agFIHVP~~p~q~~~ 180 (222)
T PRK13195 104 GEPTDP-AGPVA--YHATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAAL 180 (222)
T ss_pred CCcccC-CCcce--eecCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHHHHhhcCCCceEEEEEcCCCHHHhhh
Confidence 999986 68865 5699999999999999999999999999999999999999998654 35899999996633
Q ss_pred --------CChHHHHHHHHHHHHHHH
Q 030284 160 --------IDEDTQMQFVATLFEAVA 177 (180)
Q Consensus 160 --------~~~e~~~~~~~~lI~~ia 177 (180)
++-+.+.+.+...|+++.
T Consensus 181 ~~~~~~psm~l~~~~~av~~~i~~~~ 206 (222)
T PRK13195 181 DHNLGVPSMSVQTAVAGVTAGIEAAI 206 (222)
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 334556667777777765
No 6
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1e-39 Score=268.29 Aligned_cols=158 Identities=25% Similarity=0.402 Sum_probs=137.9
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
++..| .+.+|||+|..+.+.+.+.+++ ++||+|||+|++++++.|+||++|+|.+++++||++|.+|.+++
T Consensus 33 ~~~~i-~~~~lPV~y~~~~~~l~~~l~~--------~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~ 103 (215)
T PRK13197 33 GGAEI-IKRQLPTVFGKSAEVLKEAIEE--------VQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEP 103 (215)
T ss_pred CCcEE-EEEEECCChHHHHHHHHHHHHH--------hCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCc
Confidence 45666 5889999999988888777776 78999999999999999999999999988899999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~------- 159 (180)
|.. +||.. +.|+||++++++++++.|+|+++|+|||+|||||+||+||++.+++ +.+++|||||++++
T Consensus 104 i~~-~gp~~--~~t~Lp~~~l~~~l~~~gip~~~S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP~~~~~~~~~~~ 180 (215)
T PRK13197 104 IVE-DGPAA--YFSTLPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIPYLPEQAVNKPG 180 (215)
T ss_pred ccC-CCCce--eEcCCCHHHHHHHHHHcCCCceeccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCC
Confidence 986 67764 6799999999999999999999999999999999999999988653 46899999998832
Q ss_pred ---CChHHHHHHHHHHHHHHHh
Q 030284 160 ---IDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 160 ---~~~e~~~~~~~~lI~~ia~ 178 (180)
++.+.+.+.+..+|+.+.+
T Consensus 181 ~p~~~~~~~~~av~~~i~~~~~ 202 (215)
T PRK13197 181 TPSMSLEDIVRGLELAIEAIVE 202 (215)
T ss_pred CCCccHHHHHHHHHHHHHHHHh
Confidence 4456677778888887764
No 7
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=100.00 E-value=3.6e-39 Score=264.53 Aligned_cols=156 Identities=31% Similarity=0.419 Sum_probs=134.2
Q ss_pred CeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCce
Q 030284 10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV 89 (180)
Q Consensus 10 ~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i 89 (180)
|..+ .+.+|||+|..+.+.+.+.+++ ++||+|||+|++++++.|+||++|+|.+++++||++|++|.+++|
T Consensus 31 g~~i-~~~~lPV~~~~~~~~l~~~l~~--------~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i 101 (212)
T TIGR00504 31 GATV-VAEILPNTFFEAIEALQQAIDE--------IEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPI 101 (212)
T ss_pred CcEE-EEEEeCCChHHHHHHHHHHHHH--------HCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcc
Confidence 5555 5788999999988888777776 799999999999999999999999999889999999999999999
Q ss_pred ecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCCC-------
Q 030284 90 VLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI------- 160 (180)
Q Consensus 90 ~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~~------- 160 (180)
+. +||.. +.|+||++++++++++.|+++++|+|||+|||||+||+||++.+++ +.+++|||||++++.
T Consensus 102 ~~-~gp~~--~~ttLpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~ 178 (212)
T TIGR00504 102 VP-DGPAA--YFATLPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGV 178 (212)
T ss_pred cC-CCCce--eecCCCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCC
Confidence 86 67764 5799999999999999999999999999999999999999988654 368999999966543
Q ss_pred ---ChHHHHHHHHHHHHHHH
Q 030284 161 ---DEDTQMQFVATLFEAVA 177 (180)
Q Consensus 161 ---~~e~~~~~~~~lI~~ia 177 (180)
+-+.+.+.+...|+++.
T Consensus 179 ~~~~~~~~~~a~~~~i~~~~ 198 (212)
T TIGR00504 179 PSMSLDTAVAGVTIAIETAI 198 (212)
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 33455566777777765
No 8
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=100.00 E-value=3e-37 Score=249.43 Aligned_cols=140 Identities=31% Similarity=0.483 Sum_probs=120.2
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
+++.+ .+.+|||+|..+.+. ++++|++++||++||+|++++++.++||++|+|.++++.||++|++|.+++
T Consensus 32 ~~~~i-~~~~lpv~y~~~~~~--------~~~~~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~ 102 (194)
T cd00501 32 GGAEV-VGLELPVVFQKAVEV--------LPELIEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEP 102 (194)
T ss_pred CCcEE-EEEEcCccHHHHHHH--------HHHHHHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCc
Confidence 56666 477888886654444 444444589999999999999999999999999988889999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhcC--CceEEEEcCCCCCC
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTI 160 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~--~~~~FvHVP~~~~~ 160 (180)
|.+ +|+. .+.|++|++++++++++.|+++++|+|||+|||||+||+||++..+++ .+++|||||++.+.
T Consensus 103 i~~-~g~~--~~~t~lp~~~l~~~l~~~g~~~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP~~~~~ 173 (194)
T cd00501 103 IVP-GGPA--AYFSTLPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQ 173 (194)
T ss_pred ccC-CCCC--eeeecCCHHHHHHHHHhcCCCceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecCCCHHH
Confidence 986 6765 367999999999999999999999999999999999999999986543 57999999988764
No 9
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-37 Score=243.80 Aligned_cols=158 Identities=26% Similarity=0.441 Sum_probs=137.2
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|-.+ ...+|||+|.++..++-+.+++ .+||+||.+|++++|..|++||+|.|..++++|||+|++|-+++
T Consensus 32 ~g~~V-~~~~lP~~f~~s~~~l~~~i~~--------~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDep 102 (207)
T COG2039 32 GGAEV-KGRILPVVFKKSIDALVQAIAE--------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEP 102 (207)
T ss_pred cCceE-EEEEcCccHHHHHHHHHHHHHh--------hCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCc
Confidence 44444 5888999999999999888888 79999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhcC--CceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~--~~~~FvHVP~~~~------- 159 (180)
|.+ +||+.| .|+||+++++++++++|+|+.+|+.||+|+||+++|..||+..+++ .+++|||||...+
T Consensus 103 I~~-dGpaAY--fstlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l~~~~~~~~~~~~GFiHvPy~peqa~~~~~ 179 (207)
T COG2039 103 IDP-DGPAAY--FSTLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQAARKPN 179 (207)
T ss_pred cCC-CCchhh--hhcCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHHHHHHHhCCCCcceeEeecCCHHHHhCCCC
Confidence 997 798875 4999999999999999999999999999999999999999997764 5899999996543
Q ss_pred ---CChHHHHHHHHHHHHHHHh
Q 030284 160 ---IDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 160 ---~~~e~~~~~~~~lI~~ia~ 178 (180)
++-++..+-+..-|+.+.+
T Consensus 180 ~PsMsl~~ivrgv~~aIe~~~~ 201 (207)
T COG2039 180 TPSMSLDTIVRGVRAAIEAILR 201 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 3334445556666666553
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.2e-26 Score=184.45 Aligned_cols=142 Identities=29% Similarity=0.506 Sum_probs=127.7
Q ss_pred HHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHH
Q 030284 30 LLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAI 109 (180)
Q Consensus 30 ~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l 109 (180)
.|.++++.++++|..+. +..||+|.++..+.+.+|+.|++. +|...|.+|++|.+++... +|+.+ .+.|.+++..+
T Consensus 62 sy~~v~~~i~e~~~~~~-~~aIhl~sh~~knti~i~~~af~~-gy~~~d~~g~vp~~nkv~~-~~~d~-~~~s~i~c~~v 137 (213)
T KOG4755|consen 62 SYETVDEIILELWEEHL-QSAIHLGSHSQKNTIQIEQSAFSS-GYTQKDKCGKVPEGNKVKC-DGPDT-GGRSCINCEIV 137 (213)
T ss_pred chhhHhHHHHHhhccce-eEEEEecccccCcEEEEEEecccC-CccchhhcccccCCceeEe-ccccc-cccccccHHHH
Confidence 78999999999999877 999999999999999999999998 8999999999999999986 56644 46799999998
Q ss_pred HHHHHhC---------CCceEecCCCCcccchHHHHHHHHHhhhcCCceEEEEcCCCCC-CChHHHHHHHHHHHHHHHhh
Q 030284 110 LKFLKKK---------GFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 110 ~~~l~~~---------g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~~-~~~e~~~~~~~~lI~~ia~~ 179 (180)
++...+. |++|++|.|||||||||+||++|+.. +.+++|+||||+.. ...|+|.++++.+| +++.
T Consensus 138 v~~v~e~~~~~~~~~~gl~V~~s~dagR~lc~y~y~~fl~q~---~~rslfv~VPpl~~~~tke~~~~~i~~il--~~~~ 212 (213)
T KOG4755|consen 138 VKDVNERCASDGQKFGGLEVEISEDAGRYLCGYVYYSFLKQK---PCRSLFVHVPPLEGACTKEVQMRVIRSIL--FLSY 212 (213)
T ss_pred HHhhhhhhhhccccCCceEEEEcCcccceechhhhhhhhhhc---ccccceEecCccccccCHHHHHHHHHHHH--HHhh
Confidence 8877753 68999999999999999999988887 78999999999875 67899999999999 8876
Q ss_pred C
Q 030284 180 C 180 (180)
Q Consensus 180 ~ 180 (180)
|
T Consensus 213 c 213 (213)
T KOG4755|consen 213 C 213 (213)
T ss_pred C
Confidence 5
No 11
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=99.63 E-value=1e-15 Score=119.76 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=85.1
Q ss_pred chhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCc
Q 030284 26 ALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLS 105 (180)
Q Consensus 26 ~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~ 105 (180)
=+++.|+.|.+.||+||+. +||++||+|.|+..+.|.+|++|+-. +|..||.+|+.|.++++..+ +.. ..++|.+|
T Consensus 62 K~~~sYe~V~ekvpel~~~-~~~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~-~~e-~~lkt~vd 137 (166)
T PF06162_consen 62 KMEVSYEEVDEKVPELWKE-QPDFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCE-SEE-TVLKTFVD 137 (166)
T ss_pred eccchHHHHHHHhHHHHhh-CCCeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccC-ccc-cccccccC
Confidence 5789999999999999987 59999999999999999999999998 89999999999999999653 333 35889999
Q ss_pred HHHHHHHHHhC---------CCceEecCC
Q 030284 106 TEAILKFLKKK---------GFDVVISDD 125 (180)
Q Consensus 106 ~~~l~~~l~~~---------g~~v~~S~d 125 (180)
++.|++.+++. |+.++.|.|
T Consensus 138 ce~Lvkev~E~cglDg~KyGgL~Veksed 166 (166)
T PF06162_consen 138 CEELVKEVNEKCGLDGEKYGGLKVEKSED 166 (166)
T ss_pred HHHHHHHHHHHhcccccccCcEEEEecCC
Confidence 99999999985 677888765
No 12
>PRK10667 Hha toxicity attenuator; Provisional
Probab=66.46 E-value=5.9 Score=29.83 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=31.1
Q ss_pred cccchHHHHHHHHHhhhcCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 030284 128 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 128 ~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~~~~~e~~~~~~~~lI~~ia~ 178 (180)
+|||+.+|=.++.... ....++|+=|... ...| +.+||+.||.
T Consensus 15 kyLCe~L~~e~i~~L~--~s~hgWvNDptS~---~nlq---LNeLIEHIa~ 57 (122)
T PRK10667 15 KFLCETLYHECLANLG--ESNHGWVNDPTSA---VNLQ---LNELIEHIAT 57 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchH---hhhh---HHHHHHHHHH
Confidence 4999999999999884 4567888776544 2122 5788888874
No 13
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=61.11 E-value=8.6 Score=29.00 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=31.3
Q ss_pred cccchHHHHHHHHHhhhcCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 030284 128 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 128 ~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~~~~~e~~~~~~~~lI~~ia~ 178 (180)
+|||+-+|=.++.-.. ....++|+=|... ...| +.+||+.||.
T Consensus 15 k~LCe~L~~e~~~~L~--~s~~gWvNDptS~---~nlq---LNeLIEHIA~ 57 (122)
T PF10757_consen 15 KYLCESLYDEAIATLG--DSHHGWVNDPTSA---VNLQ---LNELIEHIAA 57 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchh---hhhh---HHHHHHHHHH
Confidence 4999999999998874 4667888877554 2222 5778888874
No 14
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=57.07 E-value=85 Score=23.92 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=45.7
Q ss_pred cHHHHHHHHHhCCCceEecCCCCccc---------c------hHHHHHHHHHhhhcCCceEEEEcC---CCCCCChHHHH
Q 030284 105 STEAILKFLKKKGFDVVISDDAGRFV---------C------NYVYYHSLRFAEQKGHKSLFVHVP---LFSTIDEDTQM 166 (180)
Q Consensus 105 ~~~~l~~~l~~~g~~v~~S~dAG~yl---------C------n~iyY~sL~~~~~~~~~~~FvHVP---~~~~~~~e~~~ 166 (180)
.++++.+.+++.|+.+....-..... . --.+...+..++.-+.+.+-+|.+ .......+...
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~ 107 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW 107 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH
Confidence 46788899999999843221111111 1 235566666676668999999988 44555566666
Q ss_pred HHHHHHHHHHHh
Q 030284 167 QFVATLFEAVAS 178 (180)
Q Consensus 167 ~~~~~lI~~ia~ 178 (180)
+.+.+-++.|++
T Consensus 108 ~~~~~~l~~l~~ 119 (213)
T PF01261_consen 108 ERLAENLRELAE 119 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555553
No 15
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=56.21 E-value=18 Score=27.17 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHhhhc----CCceEEEEcCCCCCCChHHHHH
Q 030284 128 RFVCNYVYYHSLRFAEQK----GHKSLFVHVPLFSTIDEDTQMQ 167 (180)
Q Consensus 128 ~ylCn~iyY~sL~~~~~~----~~~~~FvHVP~~~~~~~e~~~~ 167 (180)
.|+||+..|.++..+... +..+--|.||....++++....
T Consensus 4 ~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~ 47 (124)
T PF02662_consen 4 AFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILR 47 (124)
T ss_pred EEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHH
Confidence 389999999999887532 4568899999999998865443
No 16
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=42.26 E-value=69 Score=27.41 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc---CCceEEEEcCC
Q 030284 107 EAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPL 156 (180)
Q Consensus 107 ~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~---~~~~~FvHVP~ 156 (180)
+++.+.+.+.|+++..|++.+. .+=.+.-|+..... +.+++=|-++.
T Consensus 102 ~~i~~~l~~~gid~~~~~~~~l---DHG~~vPL~~l~~~~d~~~pvVpv~ln~ 151 (278)
T PRK13364 102 WHIIESLVEEEFDITTCQEMLV---DHAFTLPLELFWPGRDYPVKVVPVCINT 151 (278)
T ss_pred HHHHHHHHHcCCCeecccCCCC---CcchhhhHHHhCcccCCCCCEEEEEeec
Confidence 4678888889999988866543 44455555555321 23454444433
No 17
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=41.14 E-value=2.5e+02 Score=24.66 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=25.3
Q ss_pred ceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeecc
Q 030284 15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVN 56 (180)
Q Consensus 15 ~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~ 56 (180)
+.+|.|-...+......+++++ +.+..++.+||++|-+|-+
T Consensus 56 ~~~i~~e~~~~~~~~~~~a~~~-~~~~i~~~~PDvlVIispD 96 (328)
T cd07366 56 ENQITPEEMAARYARCQAALDR-LADFIRAARIDVAVIVGDD 96 (328)
T ss_pred ccccCccccccchHHHHHHHHH-HHHHHHHhCCCEEEEEcCc
Confidence 3455555555545555555555 3443444689999999984
No 18
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=36.15 E-value=39 Score=26.19 Aligned_cols=21 Identities=33% Similarity=0.649 Sum_probs=18.1
Q ss_pred CCCCcccchHHHHHHHHHhhh
Q 030284 124 DDAGRFVCNYVYYHSLRFAEQ 144 (180)
Q Consensus 124 ~dAG~ylCn~iyY~sL~~~~~ 144 (180)
+-||.|+.|=.||++|-....
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~ 62 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQ 62 (143)
T ss_pred ECChhheeCHHHHHHHHHHHh
Confidence 679999999999999976543
No 19
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=35.21 E-value=50 Score=25.08 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=34.2
Q ss_pred eEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeecc
Q 030284 16 CTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVN 56 (180)
Q Consensus 16 ~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~ 56 (180)
-+|+.|-.++-.-+.-.+|.|.++++++. .||.|+-||..
T Consensus 22 qmvvdvlHPG~a~vsK~EirEKla~mYkt-~~d~V~vfgfr 61 (132)
T KOG3424|consen 22 QMVVDVLHPGKANVSKTEIREKLAKMYKT-TPDAVFVFGFR 61 (132)
T ss_pred heeEEEecCCCCCCCHHHHHHHHHHHhcC-CcceEEEEEee
Confidence 35677888888888889999999999996 79999999983
No 20
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=35.14 E-value=1.6e+02 Score=24.43 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhhhhccccCCCcEEEEeeccCCC----c---eeeeeeeeecCCCCCCCCCCCCCCCCCceecCCCCcccc
Q 030284 27 LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGS----S---KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRS 99 (180)
Q Consensus 27 ~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~----~---~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~ 99 (180)
...+.+.++++-.++- ..+||+||-++-+..+ . .+.+.....+. ...|..|+.+....+. +.
T Consensus 23 ~~~~~~~~~~~~~~l~-~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~---~~~d~~gfp~~~~~~~-------~~ 91 (272)
T PF02900_consen 23 WQRTFAALQELGRRLR-EAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPE---GIYDFYGFPPELYEIK-------YP 91 (272)
T ss_dssp CHHHHHHHHHHHHHCH-STS-SEEEEEEEEECCS--TTCEECBEEE-SSEE----B-BS-----SSSBSSS---------
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEEEEeCCcchhhcccCCccEEEecCCCcc---cccccccccccccccC-------CC
Confidence 3444445555323332 3489999999998766 1 23444444333 2344444332222221 11
Q ss_pred cccCCcH-HHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc-CCceEEEEcCCCC--CCChHHHHH---HHHHH
Q 030284 100 RQTSLST-EAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK-GHKSLFVHVPLFS--TIDEDTQMQ---FVATL 172 (180)
Q Consensus 100 l~T~l~~-~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~-~~~~~FvHVP~~~--~~~~e~~~~---~~~~l 172 (180)
+....++ +++++.+.++|+++..+.+-|. .+=.+.-|+..... +.+++=|-++.+. ..+.+...+ .|.++
T Consensus 92 ~~g~~~la~~i~~~l~~~g~~~~~~~~~~l---DHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~~lG~aL~~~ 168 (272)
T PF02900_consen 92 APGDPELAERIAEHLRKAGFDVAASPERGL---DHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHYRLGRALRKA 168 (272)
T ss_dssp EEB-HHHHHHHHHHHHHTTS-EEECSS--B----HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEeccCcCC---ccccceeeeecccccCcceeeeEeecccccCCCHHHHHHHHHHHHHH
Confidence 1233333 3678899999999877554442 34446777776432 4666666666532 234444433 35555
Q ss_pred H
Q 030284 173 F 173 (180)
Q Consensus 173 I 173 (180)
+
T Consensus 169 ~ 169 (272)
T PF02900_consen 169 R 169 (272)
T ss_dssp H
T ss_pred H
Confidence 5
No 21
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=33.23 E-value=33 Score=31.97 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhccccCCCcEEEEeec
Q 030284 29 TLLKTLESSISQTNTNNEQVIWIHVGV 55 (180)
Q Consensus 29 v~y~~v~~~v~~~~~~~~pd~vih~Gv 55 (180)
.+|+++.+ ++||+|||+|-
T Consensus 159 ~aY~~ma~--------~~~D~viH~GD 177 (522)
T COG3540 159 TAYKTMAK--------EEPDFVIHLGD 177 (522)
T ss_pred HHHHHHHh--------cCCCEEEEcCC
Confidence 46777777 68999999996
No 22
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=30.31 E-value=31 Score=25.16 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.0
Q ss_pred HHhhhcCCceEEEEcCCCC
Q 030284 140 RFAEQKGHKSLFVHVPLFS 158 (180)
Q Consensus 140 ~~~~~~~~~~~FvHVP~~~ 158 (180)
......+++.-|||+|..+
T Consensus 77 aF~~e~~~k~FFv~Lp~i~ 95 (109)
T PF13107_consen 77 AFADEMKCKAFFVNLPEIE 95 (109)
T ss_pred HHhhhhhhHHHeeeCchhh
Confidence 3333347889999999876
No 23
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=29.33 E-value=40 Score=34.84 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCC-CCCCC
Q 030284 29 TLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 85 (180)
Q Consensus 29 v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 85 (180)
.-|.-+++ ..+.|+|||||.||. -.+-.=+..-.. ..+.||.- |-.|.
T Consensus 593 AfY~WL~~-------~F~ADAviH~GtHGt-lEwLPGK~vGLS-~~cwPd~liGdlPn 641 (1220)
T PLN03069 593 AYYTFLEK-------IFKADAVLHFGTHGS-LEFMPGKQVGMS-DACYPDSLIGNIPN 641 (1220)
T ss_pred HHHHHHHh-------hcCCCEEEEcCCCCC-cccCCCccccCC-cccChHHHhCCCCE
Confidence 45666666 378999999999974 333333433333 45788864 55664
No 24
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=27.27 E-value=1.3e+02 Score=25.77 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhCCC--ceEecCCCC--cccc---hHHHHHHHHHhhhcCCceEEEEcCCC
Q 030284 105 STEAILKFLKKKGF--DVVISDDAG--RFVC---NYVYYHSLRFAEQKGHKSLFVHVPLF 157 (180)
Q Consensus 105 ~~~~l~~~l~~~g~--~v~~S~dAG--~ylC---n~iyY~sL~~~~~~~~~~~FvHVP~~ 157 (180)
.+++|.+.+++.|+ |+.+...+| .|+- +..=|++++..........|-.||..
T Consensus 30 ~l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~et~~~r~~~Ipai 89 (258)
T TIGR03764 30 KYDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQETGDERFFRIHCL 89 (258)
T ss_pred HHHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHHHHhhccCceeeEE
Confidence 37889999999996 566654332 3776 56778888766432222344455544
No 25
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=27.05 E-value=46 Score=34.38 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCC-CCCCC
Q 030284 29 TLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 85 (180)
Q Consensus 29 v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 85 (180)
.-|.-+++ ..+.|+|||||.||+- .+-.=+..-.. ..+.||.- |-.|.
T Consensus 586 AfY~WL~~-------~F~ADAviH~GtHGtl-EwLPGK~vGLS-~~cwPd~liGdlP~ 634 (1209)
T PRK13405 586 AFYRWLRE-------DFGADAVLHFGTHGAL-EFMPGKQAGLS-AACWPDRLIGDLPN 634 (1209)
T ss_pred HHHHHHHh-------hcCCCEEEECCCCccc-ccCCCccccCC-cccChHHHhCCCCE
Confidence 45666666 3788999999999852 33333333332 35677754 44553
No 26
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=26.80 E-value=47 Score=34.37 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCC-CCCCC
Q 030284 29 TLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 85 (180)
Q Consensus 29 v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 85 (180)
.-|.-+++ ..+.|+|||||.||+ -.+-.=+..-.. ..+.||.- |-.|.
T Consensus 566 AfY~WL~~-------~f~ADAviH~GtHGt-lEwLPGK~~GLS-~~cwPd~liG~lP~ 614 (1216)
T TIGR02025 566 AFYRWLDR-------DFKADAVLHFGTHGS-LEFMPGKQTGLT-GECWPDRLLGDLPN 614 (1216)
T ss_pred HHHHHHHh-------hcCCCEEEECCCCcC-cccCCCccccCC-cccChHHHhCCCCE
Confidence 45666666 378999999999985 233333333333 35678865 45554
No 27
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=26.14 E-value=45 Score=27.44 Aligned_cols=20 Identities=20% Similarity=0.146 Sum_probs=15.9
Q ss_pred ccccCCCcEEEEeeccCCCc
Q 030284 41 TNTNNEQVIWIHVGVNSGSS 60 (180)
Q Consensus 41 ~~~~~~pd~vih~Gv~~~~~ 60 (180)
+.++.+||.||++|.+++-+
T Consensus 63 li~~f~~~~II~~G~AG~l~ 82 (233)
T PRK14697 63 LIHKFDVDAIINTGVAGGLH 82 (233)
T ss_pred HHHhcCCCEEEEEecccCCC
Confidence 44458999999999998753
No 28
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=25.95 E-value=45 Score=27.65 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=15.8
Q ss_pred ccccCCCcEEEEeeccCCCc
Q 030284 41 TNTNNEQVIWIHVGVNSGSS 60 (180)
Q Consensus 41 ~~~~~~pd~vih~Gv~~~~~ 60 (180)
+.++.+||+||++|.+|+-+
T Consensus 63 li~~f~~~~IIn~G~aG~l~ 82 (236)
T PRK06714 63 LISEFQPDELFMTGICGSLS 82 (236)
T ss_pred HHHhCCCCEEEEEEcccCCC
Confidence 44458999999999988643
No 29
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=25.45 E-value=52 Score=34.28 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCC-CCCCC
Q 030284 29 TLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 85 (180)
Q Consensus 29 v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 85 (180)
.-|.-+++ ..+.|+|||||.||+ -.+-.=+..-.. ..+.||.- |-.|.
T Consensus 580 AfY~WL~~-------~F~ADAviH~GtHGt-lEwLPGK~vGLS-~~cwPd~liG~lP~ 628 (1310)
T PRK12493 580 AYYTWLEK-------VWGADAVLHFGTHGA-LEFMPGKQMGMS-ASCWPDRLIGSLPN 628 (1310)
T ss_pred HHHHHHHh-------hcCCCEEEECCCCcC-cccCCCccccCC-cccChHHHhCCCCE
Confidence 45666666 378999999999974 233333333333 35678865 55554
No 30
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=25.24 E-value=82 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHH
Q 030284 150 LFVHVPLFSTIDEDTQMQFVATLFE 174 (180)
Q Consensus 150 ~FvHVP~~~~~~~e~~~~~~~~lI~ 174 (180)
+=--||.|..++...|++++...++
T Consensus 30 Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 30 LTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HhccCCCcccCCHHHHHHHHHHHHh
Confidence 3446899999999999998877665
No 31
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=25.15 E-value=2.3e+02 Score=24.33 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=58.5
Q ss_pred ccCCCcEEEEeeccCCCceeeee---eeeecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHhCCCc
Q 030284 43 TNNEQVIWIHVGVNSGSSKFALE---RRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFD 119 (180)
Q Consensus 43 ~~~~pd~vih~Gv~~~~~~i~lE---~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~ 119 (180)
++.+||++|-+|-.- ...+.+. +.+...++--.+|..++-+.+.+ .. .|..+ + .+++++.+.+.|++
T Consensus 45 ~~~~PDvvVii~~dH-~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~-~~-~g~~e--L-----A~~i~~~l~~~g~~ 114 (284)
T PRK13366 45 KEEKPDVIFLVYNDH-ATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVP-KV-IGHPD--L-----AAHIAQSVIQDDFD 114 (284)
T ss_pred HHhCCCEEEEEcCCc-HHhhcccCCCceEEeeCceecCcccccCCCCCC-CC-CCCHH--H-----HHHHHHHHHHCCCC
Confidence 346999999886532 1222221 22222222112554444333222 11 22221 0 14678888899999
Q ss_pred eEecCCCCcccchHHHHHHHHHhhhc----CCceEEEEcCCCCC--CChHHHH---HHHHHHHHHH
Q 030284 120 VVISDDAGRFVCNYVYYHSLRFAEQK----GHKSLFVHVPLFST--IDEDTQM---QFVATLFEAV 176 (180)
Q Consensus 120 v~~S~dAG~ylCn~iyY~sL~~~~~~----~~~~~FvHVP~~~~--~~~e~~~---~~~~~lI~~i 176 (180)
+..+.+-|. .+=.+.-|+..... +.+++=|-|..... .+.+... +.+.++|+..
T Consensus 115 ~~~~~~~~l---DHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~~ 177 (284)
T PRK13366 115 LTIVNKMDV---DHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVESY 177 (284)
T ss_pred EeecCCCCC---CccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 998876542 44445555555321 24555454443332 2233333 3466666543
No 32
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=24.11 E-value=2.3e+02 Score=24.05 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc---CCceEEEEcCCC--CCCChHHHH---HHHHHHHHH
Q 030284 107 EAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLF--STIDEDTQM---QFVATLFEA 175 (180)
Q Consensus 107 ~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~---~~~~~FvHVP~~--~~~~~e~~~---~~~~~lI~~ 175 (180)
+++.+.+.+.|+++..+.+-|. .+=.+.-|+..... +.+++=|-+... .-++.+... +.+.++|+.
T Consensus 102 ~~i~~~~~~~g~d~~~~~~~~l---DHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~ 175 (276)
T cd07949 102 WHLIESLVEDEFDITTCQEMLV---DHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIES 175 (276)
T ss_pred HHHHHHHHHcCCCeeccCCCCC---CcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4678888889999888755432 34444555554321 244443333322 122334333 346666554
No 33
>PRK13373 putative dioxygenase; Provisional
Probab=23.80 E-value=2.2e+02 Score=25.32 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCceEecC
Q 030284 107 EAILKFLKKKGFDVVISD 124 (180)
Q Consensus 107 ~~l~~~l~~~g~~v~~S~ 124 (180)
.+|++.+.+.|+++..|.
T Consensus 104 ~~l~~~l~~~gfDva~s~ 121 (344)
T PRK13373 104 ERLLRSLVADGYDVARMG 121 (344)
T ss_pred HHHHHHHHHcCCCeeeee
Confidence 467888888999998873
No 34
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=23.77 E-value=1.2e+02 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=33.9
Q ss_pred EEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccC
Q 030284 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNS 57 (180)
Q Consensus 18 vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~ 57 (180)
++.|.+++.--+.-..|.+.+++++.-..||+|+-+|+..
T Consensus 25 ~~~v~Hpg~~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T 64 (132)
T PTZ00071 25 VVEVLHPGKGTVSKKDIKEKLAKQYKVADARTIVLFGFKT 64 (132)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEccEe
Confidence 5888899977777799999999999844799999999954
No 35
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=23.52 E-value=59 Score=26.73 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=17.0
Q ss_pred HHHHHhhhhccccCCCcEEEEeec
Q 030284 32 KTLESSISQTNTNNEQVIWIHVGV 55 (180)
Q Consensus 32 ~~v~~~v~~~~~~~~pd~vih~Gv 55 (180)
..+.+.+.++.++.+||+|||+|=
T Consensus 18 ~~~~~~~~~~~~~~~~dfvv~~GD 41 (277)
T cd07378 18 KAVAKAMAKVAAELGPDFILSLGD 41 (277)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCC
Confidence 455555555555578999999994
No 36
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=23.11 E-value=54 Score=26.67 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.3
Q ss_pred cccCCCcEEEEeeccCCCc
Q 030284 42 NTNNEQVIWIHVGVNSGSS 60 (180)
Q Consensus 42 ~~~~~pd~vih~Gv~~~~~ 60 (180)
.++++|++||.+|.+++-+
T Consensus 62 i~~~~p~~II~~G~aG~l~ 80 (228)
T TIGR01704 62 LEHCKPDVIINTGSAGGLA 80 (228)
T ss_pred HHhCCCCEEEEEeeccCCC
Confidence 3447999999999998744
No 37
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=22.47 E-value=1.2e+02 Score=22.02 Aligned_cols=39 Identities=8% Similarity=0.150 Sum_probs=33.1
Q ss_pred EEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccC
Q 030284 18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNS 57 (180)
Q Consensus 18 vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~ 57 (180)
++.|.+++.--+.-..|.+.+++++. ..+++|+-.|+..
T Consensus 20 ~~~v~h~g~~tpsr~eirekLa~~~~-~~~~~vvv~~~~t 58 (99)
T PRK01178 20 KFEVYHEGSATPSRKDVRKKLAAMLN-ADKELVVVRKIKT 58 (99)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHC-cCCCEEEEEccCc
Confidence 58888999667777999999999988 4799999999954
No 38
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.33 E-value=5.4e+02 Score=22.64 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=23.2
Q ss_pred eEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccC
Q 030284 16 CTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNS 57 (180)
Q Consensus 16 ~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~ 57 (180)
.+|.|-...+.-....+++++ +.+..++.+||++|-+|=+.
T Consensus 59 ~~~~~e~~~~~~~~~~~a~~~-~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 59 EQITPEERTERHAACEAAIER-MRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred cccCcccccchHHHHHHHHHH-HHHHHHHhCCCEEEEEcCCc
Confidence 344444444333333344444 33333446899999999876
No 39
>PRK07077 hypothetical protein; Provisional
Probab=21.75 E-value=1.4e+02 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=26.3
Q ss_pred EeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCC
Q 030284 19 LEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGS 59 (180)
Q Consensus 19 l~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~ 59 (180)
++|.+.+.-|..-++.++.+ +..+|+.||.+|++++-
T Consensus 30 ~~~~~~g~~~~~~~a~~~~~----~~~~~~~vIs~G~AGgL 66 (238)
T PRK07077 30 VEVVCAARADRLERALLAAF----DARGCAGIVSFGVAGGL 66 (238)
T ss_pred ceEEecCCCHHHHHHHHHHH----HhcCCCEEEEEEecccc
Confidence 45556666677767776654 23689999999998863
No 40
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=21.17 E-value=3.6e+02 Score=24.09 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=73.2
Q ss_pred CCCCeeeeceEEEeeccC---------CchhHHHHHH-HHhhhhccccCCCcEEEEeec---cCCCceeeeeeeeecCCC
Q 030284 7 LPAGVTLGSCTVLEAAGD---------GALPTLLKTL-ESSISQTNTNNEQVIWIHVGV---NSGSSKFALERRAVNEAT 73 (180)
Q Consensus 7 ~~~~~~l~~~~vl~v~~~---------~~~~v~y~~v-~~~v~~~~~~~~pd~vih~Gv---~~~~~~i~lE~~A~N~~~ 73 (180)
+..|-.+ ...|+.|... ++-|.+-+.+ +..||++.+. +|.=.++ .|.|+.+.+.+. |
T Consensus 172 ~~~Gd~I-ka~V~~V~~~~kgp~IivSRt~p~~v~~Lfe~EVPEI~~G----~VeIk~iaR~pG~RtKVAV~s~--~--- 241 (362)
T PRK12327 172 YKHGDRI-KVYVVKVEKTTKGPQIFVSRTHPGLVKRLFELEVPEIYDG----TVEIKSIAREAGDRTKIAVRSN--N--- 241 (362)
T ss_pred CCCCCEE-EEEEEEEecCCCCCeEEEEeCCHHHHHHHHHHhCccccCC----eEEEEEEeeCCcceeEEEEEcC--C---
Confidence 3445555 4666666533 4455554444 7778888775 2222333 445667776543 2
Q ss_pred CCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHhCCCce-EecCCCCcccchHHHHHHHHHh--hhcCCceE
Q 030284 74 FLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDV-VISDDAGRFVCNYVYYHSLRFA--EQKGHKSL 150 (180)
Q Consensus 74 ~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v-~~S~dAG~ylCn~iyY~sL~~~--~~~~~~~~ 150 (180)
|+.| |-+.++ |+ -+.-+..+.+.|+...+++ ..|.|+..|+.|.++=.-.... .+...+..
T Consensus 242 ---~~iD---pvGa~i----G~------~G~rI~~i~~el~gekIdiv~~s~d~~~fi~nal~Pa~v~~v~i~~~~~~~~ 305 (362)
T PRK12327 242 ---PNVD---AKGACV----GP------KGQRVQNIVSELKGEKIDIIDWSEDPAEFVANALSPAKVVSVEVDDEEEKAA 305 (362)
T ss_pred ---CCCC---chheeE----CC------CChhHHHHHHHhCCCeEEEEEcCCCHHHHHHHhCCCceEEEEEEEcCCCcEE
Confidence 1221 333333 11 2345678899998888885 8999999999997653322211 01234678
Q ss_pred EEEcCCCC
Q 030284 151 FVHVPLFS 158 (180)
Q Consensus 151 FvHVP~~~ 158 (180)
+|-||+..
T Consensus 306 ~v~V~~~~ 313 (362)
T PRK12327 306 RVVVPDYQ 313 (362)
T ss_pred EEEEChhh
Confidence 88888665
No 41
>PRK08236 hypothetical protein; Provisional
Probab=20.43 E-value=61 Score=26.46 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=13.1
Q ss_pred CCcEEEEeeccCCCc
Q 030284 46 EQVIWIHVGVNSGSS 60 (180)
Q Consensus 46 ~pd~vih~Gv~~~~~ 60 (180)
+|++||++|++++-+
T Consensus 53 ~p~~vI~~GvAGgl~ 67 (212)
T PRK08236 53 PYDLVVSAGIAGGFP 67 (212)
T ss_pred CCCEEEEEecccCCC
Confidence 899999999988643
No 42
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.38 E-value=1.6e+02 Score=18.29 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=18.0
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 030284 151 FVHVPLFSTIDEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 151 FvHVP~~~~~~~e~~~~~~~~lI~~ia~~ 179 (180)
||||=-....+.|+.++++.++-+.+++.
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 55553333346777777877777777653
No 43
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=20.32 E-value=91 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhccccCCCcEEEEeeccCC
Q 030284 30 LLKTLESSISQTNTNNEQVIWIHVGVNSG 58 (180)
Q Consensus 30 ~y~~v~~~v~~~~~~~~pd~vih~Gv~~~ 58 (180)
.|.-+++ ..+-|+|||||-|++
T Consensus 416 fY~wl~~-------~f~ADAviH~GtHGt 437 (1098)
T PF02514_consen 416 FYLWLQE-------VFGADAVIHVGTHGT 437 (1098)
T ss_pred HHHHHHh-------hcCCCEEEEecCccc
Confidence 4566666 368899999999985
Done!