Query 030284
Match_columns 180
No_of_seqs 111 out of 716
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lac_A Pyrrolidone-carboxylate 100.0 2.6E-42 8.8E-47 282.5 17.4 155 12-178 36-202 (215)
2 4hps_A Pyrrolidone-carboxylate 100.0 1.8E-42 6.1E-47 285.5 15.6 159 9-179 55-225 (228)
3 3ro0_A Pyrrolidone-carboxylate 100.0 3.3E-42 1.1E-46 283.1 16.5 156 12-179 37-203 (223)
4 3giu_A Pyrrolidone-carboxylate 100.0 2E-42 6.8E-47 283.1 14.2 157 9-177 34-202 (215)
5 1a2z_A Pyrrolidone carboxyl pe 100.0 1.5E-41 5.2E-46 278.8 17.3 159 9-179 33-208 (220)
6 4gxh_A Pyrrolidone-carboxylate 100.0 3.7E-41 1.3E-45 275.8 17.9 158 9-178 34-203 (216)
7 1x10_A Pyrrolidone-carboxylate 100.0 5.6E-41 1.9E-45 273.3 18.1 160 9-180 32-207 (208)
8 2ebj_A Pyrrolidone carboxyl pe 100.0 1.8E-41 6E-46 273.3 14.6 153 9-175 30-191 (192)
9 1iu8_A Pyrrolidone-carboxylate 100.0 1.3E-41 4.5E-46 276.7 13.7 154 15-179 34-199 (206)
10 2eo1_A OBSCN protein, cDNA FLJ 33.5 18 0.00062 23.3 1.6 28 123-158 75-102 (102)
11 2fi0_A Conserved domain protei 32.5 38 0.0013 22.3 3.1 20 102-121 59-78 (81)
12 1m5w_A Pyridoxal phosphate bio 30.9 43 0.0015 27.2 3.6 68 83-159 87-161 (243)
13 3qc0_A Sugar isomerase; TIM ba 26.7 1.9E+02 0.0066 21.8 6.9 74 104-178 45-130 (275)
14 2e7b_A Obscurin; IG-like domai 26.6 28 0.00096 22.4 1.6 28 123-158 72-99 (103)
15 3u5c_Y RP50, 40S ribosomal pro 22.3 54 0.0018 24.2 2.5 40 17-57 23-62 (135)
16 3tva_A Xylose isomerase domain 20.1 3E+02 0.01 21.1 8.5 72 105-177 52-145 (290)
No 1
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=100.00 E-value=2.6e-42 Score=282.51 Aligned_cols=155 Identities=25% Similarity=0.391 Sum_probs=135.3
Q ss_pred eeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceec
Q 030284 12 TLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVL 91 (180)
Q Consensus 12 ~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~ 91 (180)
.| .+..+||+|.++...+.+.+++ ++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++|..
T Consensus 36 ~i-~~~~lPv~y~~~~~~l~~~~~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~ 106 (215)
T 3lac_A 36 KI-ISKQVPTVFHKSISVLKEYIEE--------LAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE 106 (215)
T ss_dssp EE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST
T ss_pred EE-EEEEEeeEhHHHHHHHHHHHHh--------hCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC
Confidence 45 4777888888766655444444 79999999999999999999999999879999999999999999986
Q ss_pred CCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC----------C
Q 030284 92 EDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------T 159 (180)
Q Consensus 92 ~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~----------~ 159 (180)
+||.. +.|+||++++++++++.|+|+++|+|||+|||||+||+||++.+++ +.+++|||||+++ .
T Consensus 107 -~Gp~~--~~s~Lpv~~~v~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~ 183 (215)
T 3lac_A 107 -EGPAA--YWSTLPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPS 183 (215)
T ss_dssp -TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCC
T ss_pred -CCCce--eecCCCHHHHHHHHHhCCCcEEEcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCC
Confidence 78764 6799999999999999999999999999999999999999998654 5789999999985 3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 030284 160 IDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 160 ~~~e~~~~~~~~lI~~ia~ 178 (180)
++.+++.+.+...|+++.+
T Consensus 184 m~~~~~~~al~~~i~~~~~ 202 (215)
T 3lac_A 184 MSLSTIRKGIELAVEVTTT 202 (215)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 6778888889999988765
No 2
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=100.00 E-value=1.8e-42 Score=285.49 Aligned_cols=159 Identities=25% Similarity=0.399 Sum_probs=139.0
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
+|+.| .+..|||+|.++...+.+.+++ ++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++
T Consensus 55 ~~~~i-~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~ 125 (228)
T 4hps_A 55 FGANI-EICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTP 125 (228)
T ss_dssp TTEEE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEEC
T ss_pred CCcEE-EEEEcceEeHHHHHHHHHHHHh--------hCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCc
Confidence 35555 4778999888876666555555 79999999999999999999999999878999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~------- 159 (180)
|.+ +||.. +.|+||+++++++|++.|+|+++|+|||+|||||+||+||++..+. +.+++|||||++++
T Consensus 126 i~~-~Gp~a--~~stLpvk~~v~~l~~~Gipa~vS~dAGtYvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~ 202 (228)
T 4hps_A 126 VIV-DGPAA--YFSRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGN 202 (228)
T ss_dssp SST-TCCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECCCGGGGCSSSC
T ss_pred CcC-CCCce--eeeCCCHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHHhcCCCceEEEEEcCCchHhhccCCC
Confidence 985 78764 6799999999999999999999999999999999999999987643 57899999999985
Q ss_pred ---CChHHHHHHHHHHHHHHHhh
Q 030284 160 ---IDEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 160 ---~~~e~~~~~~~~lI~~ia~~ 179 (180)
++.+++.+.+...|+++.++
T Consensus 203 ~psmsl~~~~~al~~~i~~~~~~ 225 (228)
T 4hps_A 203 QSSMTLMLMTLALKIAIETAWKN 225 (228)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 66788888899999888754
No 3
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=100.00 E-value=3.3e-42 Score=283.12 Aligned_cols=156 Identities=23% Similarity=0.327 Sum_probs=136.5
Q ss_pred eeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceec
Q 030284 12 TLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVL 91 (180)
Q Consensus 12 ~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~ 91 (180)
.| .+..+||+|.++...+-+.+++ ++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++|.+
T Consensus 37 ~i-~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~ 107 (223)
T 3ro0_A 37 SI-VSEQVPTVFYKSLAVLREAMKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQ 107 (223)
T ss_dssp EE-EEEEECSCTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSST
T ss_pred EE-EEEEeeeEehhHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcC
Confidence 45 4778899888766666555555 79999999999999999999999999888999999999999999986
Q ss_pred CCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC---------CC
Q 030284 92 EDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS---------TI 160 (180)
Q Consensus 92 ~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~---------~~ 160 (180)
+||.. +.|+||+++++++|+++|+|+++|+|||+|||||+||+||++..+. +.+++|||||+++ .+
T Consensus 108 -~Gp~a--~~stLpv~~~v~~l~~~gipa~vS~dAG~yvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~psm 184 (223)
T 3ro0_A 108 -GGPAA--YWTGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQKSAPSL 184 (223)
T ss_dssp -TSCSE--EECCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECBCGGGCSSSCCCBC
T ss_pred -CCCce--eecCCCHHHHHHHHHHCCCCEEEeCCCCcccchHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCC
Confidence 78764 6799999999999999999999999999999999999999998654 5789999999984 36
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 030284 161 DEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 161 ~~e~~~~~~~~lI~~ia~~ 179 (180)
+.+++.+.+...|+++.++
T Consensus 185 ~~~~~~~al~~~i~~~~~~ 203 (223)
T 3ro0_A 185 SLDHITKALKIAAVTAAAH 203 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 7778888889899888754
No 4
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=100.00 E-value=2e-42 Score=283.13 Aligned_cols=157 Identities=23% Similarity=0.332 Sum_probs=133.0
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
+|+.| .+..|||+|.++. +.++++|++++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++
T Consensus 34 ~~~~i-~~~~lPv~~~~~~--------~~l~~~i~~~~Pd~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~ 104 (215)
T 3giu_A 34 GTHTI-DKLKLPTSFKKVD--------NIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQA 104 (215)
T ss_dssp TTEEE-EEEEECSCHHHHH--------HHHHHHHHHSCCSEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEEC
T ss_pred CCcEE-EEEEeceehHhHH--------HHHHHHHHHhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCc
Confidence 44555 3667777765544 44445555589999999999999999999999999878999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC--------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS-------- 158 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~-------- 158 (180)
|.. +||.. +.|+||+++++++|+++|+|+++|+|||+|||||+||+||++..++ +.+++|||||+++
T Consensus 105 i~~-~gp~~--~~stLpv~~iv~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~eq~~~~~~ 181 (215)
T 3giu_A 105 IHL-DGAPA--YFSNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGKPD 181 (215)
T ss_dssp SCT-TSCSE--EECCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHHHHHTCTTCEEEEEEECCCGGGGTTCTT
T ss_pred ccC-CCccc--cccCCCHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCCHHHhccCCC
Confidence 986 78764 6799999999999999999999999999999999999999998654 5789999999994
Q ss_pred --CCChHHHHHHHHHHHHHHH
Q 030284 159 --TIDEDTQMQFVATLFEAVA 177 (180)
Q Consensus 159 --~~~~e~~~~~~~~lI~~ia 177 (180)
.++.+++.+.+..+|+++.
T Consensus 182 ~psm~~~~~~~al~~~i~~~~ 202 (215)
T 3giu_A 182 TPSMPLEKIVAGLTAAIEAIS 202 (215)
T ss_dssp CCCCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 3567788888888887654
No 5
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=100.00 E-value=1.5e-41 Score=278.78 Aligned_cols=159 Identities=26% Similarity=0.383 Sum_probs=136.8
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.+..+ .+..+||+|.++...+.+.+++ ++||+|||+|++++++.|++||+|+|.+++++||++|++|.+++
T Consensus 33 ~~~~i-~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~Vi~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~ 103 (220)
T 1a2z_A 33 GNAMV-YGRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEK 103 (220)
T ss_dssp TTEEE-EEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBC
T ss_pred CCeEE-EEEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCC
Confidence 45555 4677888877666655555554 79999999999999999999999999988899999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC--------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS-------- 158 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~-------- 158 (180)
|.. +||.. +.|+||+++++++++++|+++++|+|||+|||||+||+||++.+++ +.+++|||||+++
T Consensus 104 i~~-~gp~~--~~ttLpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~l~~~~~~~~~ 180 (220)
T 1a2z_A 104 IEE-DAPLA--YMATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFF 180 (220)
T ss_dssp SCT-TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEE
T ss_pred ccC-CCCce--eEcCCCHHHHHHHHHHCCCCEEEeCCCCcchhhHHHHHHHHHHHhccCCceeEEEEeCCChhhhhhhcc
Confidence 985 78764 6799999999999999999999999999999999999999999765 7899999999887
Q ss_pred -------CCChHHHHHHHHHHHHHHHhh
Q 030284 159 -------TIDEDTQMQFVATLFEAVAST 179 (180)
Q Consensus 159 -------~~~~e~~~~~~~~lI~~ia~~ 179 (180)
.++.++..+.+..+|+++.++
T Consensus 181 ~~~~~~p~ms~e~~~~al~~~i~~~~~~ 208 (220)
T 1a2z_A 181 LLGKNTPSMCLEAEIKAIELAVKVSLDY 208 (220)
T ss_dssp ETTEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 256777888888888887653
No 6
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=100.00 E-value=3.7e-41 Score=275.79 Aligned_cols=158 Identities=25% Similarity=0.400 Sum_probs=138.1
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|..| .+..+||+|.++.+.+++.+++ ++||+|||+|++++++.|++|++|+|..++++||++|++|.+++
T Consensus 34 ~~~~i-~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~vi~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~ 104 (216)
T 4gxh_A 34 FGANI-EICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTP 104 (216)
T ss_dssp TTEEE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBC
T ss_pred CCceE-EEEecCccHHHHHHHHHHHHHh--------hCCCEEEEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCc
Confidence 45666 4778999999888877777776 78999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~------- 159 (180)
|.. +||.. +.|+||+++++++++++|+|+++|+|||+|||||+||+||++.+++ +.+++|||||++++
T Consensus 105 i~~-~gp~~--~~t~Lpv~~iv~~l~~~gipa~vS~dAG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~lpeq~~~~~~ 181 (216)
T 4gxh_A 105 VIV-DGPAA--YFSRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGN 181 (216)
T ss_dssp SST-TCCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECBCHHHHHHHSS
T ss_pred ccC-CCchh--eecCCCHHHHHHHHHHCCCCEEEeCCCcccHHHHHHHHHHHHHHHcCCCCeEEEEEcCCChHhhccCCC
Confidence 986 78764 5699999999999999999999999999999999999999988654 57899999998732
Q ss_pred ---CChHHHHHHHHHHHHHHHh
Q 030284 160 ---IDEDTQMQFVATLFEAVAS 178 (180)
Q Consensus 160 ---~~~e~~~~~~~~lI~~ia~ 178 (180)
++.+...+.+...|++.++
T Consensus 182 ~psm~l~~~~~al~~~i~~~~~ 203 (216)
T 4gxh_A 182 QSSMTLMLMTLALKIAIETAWK 203 (216)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc
Confidence 4556777778888887664
No 7
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=100.00 E-value=5.6e-41 Score=273.34 Aligned_cols=160 Identities=30% Similarity=0.391 Sum_probs=139.2
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|..| .+..+||+|.++.+.+.+.+++ ++||+|||+|++++++.|++||+|+|.+++++||++|++|.+++
T Consensus 32 ~~~~i-~~~~lPv~~~~~~~~l~~~~~~--------~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~ 102 (208)
T 1x10_A 32 GDAQV-FGRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEP 102 (208)
T ss_dssp TTEEE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBC
T ss_pred CCeEE-EEEEEeeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCc
Confidence 46666 4778999999887777666665 68999999999999999999999999988899999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~------- 159 (180)
|.. +||.. +.|+||+++++++|+++|+++++|+|||+|+|||+||+||++.+++ +.+++|||||++++
T Consensus 103 i~~-~gp~~--~~ttlpi~~iv~~l~~~gi~~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~ 179 (208)
T 1x10_A 103 IVP-GAPTA--YFSTLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIG 179 (208)
T ss_dssp SST-TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHSCCSEEEEEEECBCGGGTHHHHT
T ss_pred eeC-CCCce--eEcCCCHHHHHHHHHhCCCCEEEecCCCcchhhHHHHHHHHHHHhccCCCceEEEEcCCCchhhhcccC
Confidence 985 78764 6799999999999999999999999999999999999999998753 34999999998762
Q ss_pred -------CChHHHHHHHHHHHHHHHhhC
Q 030284 160 -------IDEDTQMQFVATLFEAVASTC 180 (180)
Q Consensus 160 -------~~~e~~~~~~~~lI~~ia~~~ 180 (180)
++.++..+.+..+|+++.+++
T Consensus 180 ~~~~~p~~~~~~~~~~l~~~i~~~~~~~ 207 (208)
T 1x10_A 180 KGQVPPSMSYEMALEAVKVAIEVALEEL 207 (208)
T ss_dssp TSCCCCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456777888899999887763
No 8
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-41 Score=273.31 Aligned_cols=153 Identities=26% Similarity=0.356 Sum_probs=130.4
Q ss_pred CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030284 9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP 88 (180)
Q Consensus 9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~ 88 (180)
.|..+ .+..+||+ .++...+.+.+++ ++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++
T Consensus 30 ~~~~i-~~~~lPv~-~~~~~~l~~~~~~--------~~pd~vi~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~ 99 (192)
T 2ebj_A 30 DGKPL-RKAVLPVD-AEALGEALEDLHR--------EGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLP 99 (192)
T ss_dssp TTEEE-EEEEECSC-HHHHHHHHHHHHT--------TCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBC
T ss_pred CCcEE-EEEEeccc-ccHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCc
Confidence 35555 46668888 7666655544444 79999999999999999999999999878999999999999999
Q ss_pred eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhcCCceEEEEcCCCCC---------
Q 030284 89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST--------- 159 (180)
Q Consensus 89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~~--------- 159 (180)
|.+ +||.. +.|+||++++++++++.|+|+++|+|||+|+|||+||+||++.+ .+.+++|||||++++
T Consensus 100 i~~-~gp~~--~~t~lp~~~iv~~l~~~g~p~~vS~~AG~ylCN~i~Y~sL~~~~-~~~~~gFIHVP~~~~~~~~~~~p~ 175 (192)
T 2ebj_A 100 IVP-GGPLA--LPARFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLP-EEVPVGFLHLPPDETLALKRPRPY 175 (192)
T ss_dssp SST-TSCSE--EECBSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHSC-TTSCEEEEEECCCHHHHHHSCCCC
T ss_pred eeC-CCCce--eEcCCCHHHHHHHHHHCCCCEEEeCCCCccHHHHHHHHHHHhcc-CCCceEEEEeCCChhhhcccCCCC
Confidence 986 78764 67999999999999999999999999999999999999999986 558999999998864
Q ss_pred CChHHHHHHHHHHHHH
Q 030284 160 IDEDTQMQFVATLFEA 175 (180)
Q Consensus 160 ~~~e~~~~~~~~lI~~ 175 (180)
++.|++.+.+..+|++
T Consensus 176 ~~~e~~~~al~~~i~~ 191 (192)
T 2ebj_A 176 VPLEVQARAVRLALEH 191 (192)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5667777777777654
No 9
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=100.00 E-value=1.3e-41 Score=276.71 Aligned_cols=154 Identities=29% Similarity=0.426 Sum_probs=132.5
Q ss_pred ceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceecCCC
Q 030284 15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG 94 (180)
Q Consensus 15 ~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g 94 (180)
.+..+||+|.++.+.+.+.+++ ++||+|||+|++++++.|++|++|+|.+++++||++|++|.+++|.. +|
T Consensus 34 ~~~~lPv~~~~~~~~l~~~~~~--------~~Pd~vi~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~-~g 104 (206)
T 1iu8_A 34 VGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVE-GG 104 (206)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSST-TC
T ss_pred EEEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeC-CC
Confidence 3567777776655555555544 79999999999999999999999999988899999999999999985 78
Q ss_pred CcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC----------CCCh
Q 030284 95 GISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDE 162 (180)
Q Consensus 95 ~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~----------~~~~ 162 (180)
|.. +.|+||++++++++++.|+|+++|+|||+|+|||+||+||++.+++ +.+++|||||+++ .++.
T Consensus 105 p~~--~~t~Lpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~p~~~~ 182 (206)
T 1iu8_A 105 PAA--YFATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEKKNTPSMSL 182 (206)
T ss_dssp CSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTCTTCCBCCH
T ss_pred Cce--eEcCCCHHHHHHHHHhCCCCEEEeCCCCccHhhHHHHHHHHHHHhccCCCceEEEEcCCChhhhcccCCCCCCCH
Confidence 764 6799999999999999999999999999999999999999998753 3499999999987 3667
Q ss_pred HHHHHHHHHHHHHHHhh
Q 030284 163 DTQMQFVATLFEAVAST 179 (180)
Q Consensus 163 e~~~~~~~~lI~~ia~~ 179 (180)
+++.+.+..+|+++.++
T Consensus 183 ~~~~~al~~~i~~~~~~ 199 (206)
T 1iu8_A 183 DLEIKGVEIAIRVAQSA 199 (206)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888887654
No 10
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.45 E-value=18 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=18.7
Q ss_pred cCCCCcccchHHHHHHHHHhhhcCCceEEEEcCCCC
Q 030284 123 SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS 158 (180)
Q Consensus 123 S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~ 158 (180)
..|+|.|.|..- .....-.+.|..|++.
T Consensus 75 ~~D~G~Y~C~a~--------~~~~~~~l~V~~p~~g 102 (102)
T 2eo1_A 75 QAEAGEYSCEAG--------GQQLSFRLQVAGQCFG 102 (102)
T ss_dssp TTTCSCEEEEET--------TEECCEEEEEESCCCC
T ss_pred cccCEEEEEEcC--------CCcEEEEEEEeCCCCC
Confidence 479999999651 1123456888888863
No 11
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=32.52 E-value=38 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=18.1
Q ss_pred cCCcHHHHHHHHHhCCCceE
Q 030284 102 TSLSTEAILKFLKKKGFDVV 121 (180)
Q Consensus 102 T~l~~~~l~~~l~~~g~~v~ 121 (180)
-++|++.+++.|++.|+.+.
T Consensus 59 ~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 59 AGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HTCCHHHHHHHHHHTTCEEE
T ss_pred cCCCHHHHHHHHHHcCCEee
Confidence 57999999999999999875
No 12
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=30.86 E-value=43 Score=27.19 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCCCCceecCCCCcccccccCCcH-------HHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhcCCceEEEEcC
Q 030284 83 QPQQIPVVLEDGGISRSRQTSLST-------EAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVP 155 (180)
Q Consensus 83 ~p~~~~i~~~~g~~~~~l~T~l~~-------~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP 155 (180)
+|..-+++|+ .+.+..-+.+||+ ..++++|++.|+.|++--||.. ..+..+.+-+.+.+=+|-=
T Consensus 87 kP~~vtLVPE-~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd~--------~qi~aA~~~GA~~IELhTG 157 (243)
T 1m5w_A 87 KPHFCCLVPE-KRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADE--------EQIKAAAEVGAPFIEIHTG 157 (243)
T ss_dssp CCSEEEECCC-CSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCH--------HHHHHHHHTTCSEEEEECH
T ss_pred CCCEEEECCC-CCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCCH--------HHHHHHHHhCcCEEEEech
Confidence 3444455553 3333223345666 5789999999999999999883 4444555557777888876
Q ss_pred CCCC
Q 030284 156 LFST 159 (180)
Q Consensus 156 ~~~~ 159 (180)
++..
T Consensus 158 ~Ya~ 161 (243)
T 1m5w_A 158 CYAD 161 (243)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 5543
No 13
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=26.67 E-value=1.9e+02 Score=21.78 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHhCCCceEecCCCCcccch----------HHHHHHHHHhhhcCCceEEEEcCCCC--CCChHHHHHHHHH
Q 030284 104 LSTEAILKFLKKKGFDVVISDDAGRFVCN----------YVYYHSLRFAEQKGHKSLFVHVPLFS--TIDEDTQMQFVAT 171 (180)
Q Consensus 104 l~~~~l~~~l~~~g~~v~~S~dAG~ylCn----------~iyY~sL~~~~~~~~~~~FvHVP~~~--~~~~e~~~~~~~~ 171 (180)
.+++++.+.+++.|+.+..- .++.+++. ..+-..+..+..-+.+.+-+|.-... ..+.+...+.+.+
T Consensus 45 ~~~~~~~~~l~~~gl~~~~~-~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~ 123 (275)
T 3qc0_A 45 IGLGEAGRIVRANGLKLTGL-CRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVE 123 (275)
T ss_dssp HCHHHHHHHHHHHTCEESCE-EEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCceEEe-ecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHH
Confidence 45678888999999875421 22223332 23445556666668888888852222 2344555555566
Q ss_pred HHHHHHh
Q 030284 172 LFEAVAS 178 (180)
Q Consensus 172 lI~~ia~ 178 (180)
.++.+++
T Consensus 124 ~l~~l~~ 130 (275)
T 3qc0_A 124 GIAAVLP 130 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 14
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=26.55 E-value=28 Score=22.38 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=17.9
Q ss_pred cCCCCcccchHHHHHHHHHhhhcCCceEEEEcCCCC
Q 030284 123 SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS 158 (180)
Q Consensus 123 S~dAG~ylCn~iyY~sL~~~~~~~~~~~FvHVP~~~ 158 (180)
..|+|.|.|. .-.....-.+.|+.||..
T Consensus 72 ~~D~G~Y~C~--------~g~~~~~~~l~V~~~p~~ 99 (103)
T 2e7b_A 72 PQDSGRYSCS--------FGDQTTSATLTVTALPSG 99 (103)
T ss_dssp TTTCCCEEEE--------CSSCBCCBCEEEECCCCC
T ss_pred cccCEEEEEE--------ECCcEEEEEEEEEecccc
Confidence 3699999996 111123445788887754
No 15
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=22.31 E-value=54 Score=24.21 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=33.0
Q ss_pred EEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccC
Q 030284 17 TVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNS 57 (180)
Q Consensus 17 ~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~ 57 (180)
.++.|.+++.--+.-..|.+.+++++.. .||+|+-+|+..
T Consensus 23 ~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT 62 (135)
T 3u5c_Y 23 FVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRT 62 (135)
T ss_dssp EEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEE
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEe
Confidence 3578999986666668999999999986 899999999843
No 16
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=20.07 E-value=3e+02 Score=21.05 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhCCCceEecC-C-CCcccchH--------------------HHHHHHHHhhhcCCceEEEEcCCCCCCCh
Q 030284 105 STEAILKFLKKKGFDVVISD-D-AGRFVCNY--------------------VYYHSLRFAEQKGHKSLFVHVPLFSTIDE 162 (180)
Q Consensus 105 ~~~~l~~~l~~~g~~v~~S~-d-AG~ylCn~--------------------iyY~sL~~~~~~~~~~~FvHVP~~~~~~~ 162 (180)
.++++.+.+++.|+.+..-. . .|.+++|. .+-..+..+..-+.+.+-+|....... .
T Consensus 52 ~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~-~ 130 (290)
T 3tva_A 52 HAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES-S 130 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT-T
T ss_pred HHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc-c
Confidence 36788999999999875432 1 34444442 233444555555788888886533222 2
Q ss_pred HHHHHHHHHHHHHHH
Q 030284 163 DTQMQFVATLFEAVA 177 (180)
Q Consensus 163 e~~~~~~~~lI~~ia 177 (180)
+...+.+.+.++.++
T Consensus 131 ~~~~~~~~~~l~~l~ 145 (290)
T 3tva_A 131 SPDYSELVRVTQDLL 145 (290)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333444444455544
Done!