BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030285
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
 pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
          Length = 226

 Score = 30.8 bits (68), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 106 RYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREG 154
           R PW G  R    E ++ R  +++ E  P L G R    +   Q L  G
Sbjct: 66  RQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVG 114


>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
           Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
           Pneumoniae
          Length = 547

 Score = 26.6 bits (57), Expect = 8.8,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 92  GED-DEADGSGGPRQRYPW-EGSDRDYEYEELLGRVFNILRE 131
           GED D  DGS     RYPW EG +  Y++  L  RVF  L+E
Sbjct: 35  GEDYDFPDGSD---SRYPWREGIETSYKH-VLTDRVFRRLKE 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.137    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,349,642
Number of Sequences: 62578
Number of extensions: 217221
Number of successful extensions: 253
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)