BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030285
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta OS=Malus
domestica PE=2 SV=2
Length = 271
Score = 226 bits (575), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/170 (74%), Positives = 142/170 (83%), Gaps = 1/170 (0%)
Query: 1 MTDENQVDVKDEV-AELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLEST 59
M D+NQ +VKDEV A++APFDPTKKKKKK+VVIQD +DDSV KLAEK E + SEG EST
Sbjct: 1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQEST 60
Query: 60 FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
F GLKKKKKKP+E+S+LN+E GDA +DL+ GED+E +G YPWEGSDRDY YE
Sbjct: 61 FAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYE 120
Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
ELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKT
Sbjct: 121 ELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKT 170
>sp|O24473|IF2B_WHEAT Eukaryotic translation initiation factor 2 subunit beta OS=Triticum
aestivum PE=1 SV=1
Length = 270
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/171 (73%), Positives = 141/171 (82%), Gaps = 4/171 (2%)
Query: 1 MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
M DE Q++ K+E E+APFDPTKKKKKKKVVIQDP+D+ VDKLAEKTE LSV+E E++F
Sbjct: 1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASF 59
Query: 61 TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEY 118
GLKKKKKK VE E GD D LD VGED++ +G GG Q YPWEG+DRDY+Y
Sbjct: 60 VGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKY 118
Query: 119 EELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 119 DELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
>sp|Q41969|IF2B_ARATH Eukaryotic translation initiation factor 2 subunit beta
OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3
Length = 268
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 141/170 (82%), Gaps = 2/170 (1%)
Query: 1 MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDK-LAEKTETLSVSEGLEST 59
M DE ++++E +LAPFDP+KKKKKKKVVIQ+P +D + EK+++L V++GLES+
Sbjct: 1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59
Query: 60 FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
FTG+KKKKKKP ESSLLN+E DAG+DLD ++ E + +QRYPWEGS+RDY Y+
Sbjct: 60 FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119
Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169
>sp|Q99L45|IF2B_MOUSE Eukaryotic translation initiation factor 2 subunit 2 OS=Mus
musculus GN=Eif2s2 PE=1 SV=1
Length = 331
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 93 EDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVL 151
ED + D + W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+
Sbjct: 149 EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVV 208
Query: 152 REGTKKTVFVNFMDLCK 168
R GTKKT FVNF D+CK
Sbjct: 209 RVGTKKTSFVNFTDICK 225
>sp|Q5E9D0|IF2B_BOVIN Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus
GN=EIF2S2 PE=2 SV=1
Length = 333
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 98 DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
DG Q P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214
Query: 156 KKTVFVNFMDLCK 168
KKT FVNF D+CK
Sbjct: 215 KKTSFVNFTDICK 227
>sp|Q5R4T9|IF2B_PONAB Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo
abelii GN=EIF2S2 PE=2 SV=1
Length = 333
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 98 DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
DG Q P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214
Query: 156 KKTVFVNFMDLCK 168
KKT FVNF D+CK
Sbjct: 215 KKTSFVNFTDICK 227
>sp|P20042|IF2B_HUMAN Eukaryotic translation initiation factor 2 subunit 2 OS=Homo
sapiens GN=EIF2S2 PE=1 SV=2
Length = 333
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 98 DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
DG Q P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214
Query: 156 KKTVFVNFMDLCK 168
KKT FVNF D+CK
Sbjct: 215 KKTSFVNFTDICK 227
>sp|P41035|IF2B_RABIT Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus
cuniculus GN=EIF2S2 PE=1 SV=1
Length = 333
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 98 DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
DG Q P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214
Query: 156 KKTVFVNFMDLCK 168
KKT FVNF D+CK
Sbjct: 215 KKTSFVNFTDICK 227
>sp|Q54T27|IF2B_DICDI Eukaryotic translation initiation factor 2 subunit 2
OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1
Length = 317
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 97 ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTK 156
+DG + PW G+DRDY+Y EL R++++L+ NNP+L D++RT M+PPQV+REGTK
Sbjct: 144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTK 202
Query: 157 KTVFVNFMDLCKT 169
KT++ NF ++C T
Sbjct: 203 KTIWANFAEICGT 215
>sp|P41375|IF2B_DROME Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila
melanogaster GN=eIF-2beta PE=1 SV=1
Length = 312
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
Query: 76 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPE 135
L++ D DD E+DE + S W GSDRDY Y+ELL RVF I+ + NP+
Sbjct: 120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPD 172
Query: 136 LAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKT 169
+A R+ + VMRPPQVLR GTKKT F NFMD+ KT
Sbjct: 173 MAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKT 207
>sp|P56329|IF2B_SCHPO Probable eukaryotic translation initiation factor 2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif212 PE=1 SV=2
Length = 321
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 72 ESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRE 131
E L GDA DL D E G + W SDRDY Y ELL R F +LR
Sbjct: 131 EKELEASSTGDATSDLSKQTF-DSENMG------EHAWLKSDRDYYYPELLNRFFTLLRT 183
Query: 132 NNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCK 168
NNPELAG++R+ + PP V REG KKT+F N D+ K
Sbjct: 184 NNPELAGEKRKYTIVPPSVHREG-KKTIFANISDISK 219
>sp|Q21230|IF2B_CAEEL Eukaryotic translation initiation factor 2 subunit 2
OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4
Length = 250
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%)
Query: 102 GPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFV 161
G + +G+ DY YEE L V+ ++++ NP+ AGD+++ ++ P+V R G+KKT F
Sbjct: 73 GAQNLIDAKGAWPDYTYEEALTLVYQVMKDKNPDFAGDKKKFAIKLPEVARAGSKKTAFS 132
Query: 162 NFMDLCK 168
NF+++C+
Sbjct: 133 NFLEICR 139
>sp|P09064|IF2B_YEAST Eukaryotic translation initiation factor 2 subunit beta
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SUI3 PE=1 SV=2
Length = 285
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 85/189 (44%), Gaps = 45/189 (23%)
Query: 11 DEVAELAPFDPTK-KKKKKKVVIQDPSDDSV---------------------------DK 42
D AEL FDP KKKK K VI D D +V D
Sbjct: 4 DLAAELG-FDPALKKKKKTKKVIPDDFDAAVNGKENGSGDDLFAGLKKKKKKSKSVSADA 62
Query: 43 LAEKTETLSVSEGLESTFTGLKKKKKKPVESSL--LNDEIGDAG-DDLDGHVGEDDEADG 99
AEK T ++E L LKKKKKK +SS+ E+ AG D++D E
Sbjct: 63 EAEKEPTDDIAEALGE--LSLKKKKKKTKDSSVDAFEKELAKAGLDNVDAESKE------ 114
Query: 100 SGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMR--PPQVLREGTKK 157
G P + + Y ELL R FNILR NNPELAGDR R PP LR+G KK
Sbjct: 115 -GTPSANSSIQ-QEVGLPYSELLSRFFNILRTNNPELAGDRSGPKFRIPPPVCLRDG-KK 171
Query: 158 TVFVNFMDL 166
T+F N D+
Sbjct: 172 TIFSNIQDI 180
>sp|P56725|ZOX_PHAVU Zeatin O-xylosyltransferase OS=Phaseolus vulgaris GN=ZOX1 PE=2 SV=1
Length = 454
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 12 EVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF---------TG 62
EV L PF P +KK + P + +DK E + + VS G + TG
Sbjct: 222 EVWALGPFTPLAVEKKDSIGFSHPCMEWLDK-QEPSSVIYVSFGTTTALRDEQIQELATG 280
Query: 63 LKKKKKKPVESSLLNDEIGDAGDDLDG 89
L++ K+K + +L D D GD DG
Sbjct: 281 LEQSKQKFIW--VLRD--ADKGDIFDG 303
>sp|Q8TWR5|IF2B_METKA Translation initiation factor 2 subunit beta OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=eif2b PE=3 SV=1
Length = 138
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCK 168
+Y+YEELL R + E PE + RR M P+V EG K TV NF ++ K
Sbjct: 3 EYDYEELLERAY----EQLPEEVLEDRRFEMPKPKVSVEG-KTTVIRNFKEISK 51
>sp|P77247|YNIC_ECOLI 2-deoxyglucose-6-phosphate phosphatase OS=Escherichia coli (strain
K12) GN=yniC PE=1 SV=1
Length = 222
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 106 RYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMD 165
R PW G R E ++ R +++ E P L G R + Q L G ++ ++
Sbjct: 64 RQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLE 123
>sp|Q7ADF8|YNIC_ECO57 2-deoxyglucose-6-phosphate phosphatase OS=Escherichia coli O157:H7
GN=yniC PE=3 SV=1
Length = 222
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 106 RYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMD 165
R PW G R E ++ R +++ E P L G R + Q L G ++ ++
Sbjct: 64 RQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLE 123
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=aars-2 PE=2 SV=1
Length = 968
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 44 AEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSG-- 101
A+ T+ ++ +GL T ++ ++K +E+S + G D LD V E G
Sbjct: 423 ADLTQLMAEEKGLSVDNTAFEEARRKAIETS--SAGTGKFRDTLDLDVHALAELQQKGVP 480
Query: 102 ----GPRQRYPW--EGSDRDYEYEELLGRVFNILRE 131
P+ Y + EGSD Y++E +G++ I R+
Sbjct: 481 TTDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRD 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,916,511
Number of Sequences: 539616
Number of extensions: 3419376
Number of successful extensions: 10241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 10024
Number of HSP's gapped (non-prelim): 272
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)