Query 030285
Match_columns 180
No_of_seqs 167 out of 317
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2768 Translation initiation 100.0 2.3E-35 5.1E-40 250.0 5.1 126 51-180 17-142 (231)
2 PRK03988 translation initiatio 99.8 4.6E-21 9.9E-26 153.0 5.2 61 115-180 4-64 (138)
3 TIGR00311 aIF-2beta translatio 99.8 5.9E-20 1.3E-24 145.8 4.8 59 117-180 1-59 (133)
4 PRK12336 translation initiatio 99.8 1.4E-19 3.1E-24 151.1 5.1 60 116-180 1-60 (201)
5 COG1601 GCD7 Translation initi 99.6 1E-15 2.2E-20 124.2 2.7 62 114-180 4-66 (151)
6 PF01873 eIF-5_eIF-2B: Domain 99.6 1.9E-15 4.1E-20 118.9 3.5 50 131-180 4-54 (125)
7 smart00653 eIF2B_5 domain pres 99.5 1.8E-14 3.9E-19 111.3 3.1 40 141-180 2-41 (110)
8 COG1163 DRG Predicted GTPase [ 84.1 0.99 2.1E-05 41.8 3.1 51 113-174 272-327 (365)
9 KOG2768 Translation initiation 35.1 14 0.00031 32.5 0.3 21 14-34 20-40 (231)
10 PRK11200 grxA glutaredoxin 1; 31.3 49 0.0011 23.0 2.5 24 146-172 58-81 (85)
11 PF14527 LAGLIDADG_WhiA: WhiA 30.0 75 0.0016 23.5 3.4 45 117-172 29-73 (93)
12 PF09271 LAG1-DNAbind: LAG1, D 28.7 36 0.00078 27.5 1.6 19 138-156 15-33 (140)
13 PF01359 Transposase_1: Transp 27.9 74 0.0016 23.2 3.0 21 118-138 59-79 (81)
14 COG4936 PocR Predicted sensor 26.7 52 0.0011 27.6 2.2 48 119-176 9-56 (169)
15 KOG1486 GTP-binding protein DR 26.5 67 0.0015 29.6 3.1 51 115-174 273-326 (364)
16 PF04908 SH3BGR: SH3-binding, 25.7 1.3E+02 0.0029 22.8 4.2 39 127-169 47-86 (99)
17 cd05781 DNA_polB_B3_exo DEDDy 25.3 52 0.0011 26.9 2.0 18 119-136 49-66 (188)
18 KOG4713 Cyclin-dependent kinas 21.0 1E+02 0.0022 26.4 3.0 50 104-177 123-172 (189)
No 1
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-35 Score=249.96 Aligned_cols=126 Identities=52% Similarity=0.730 Sum_probs=96.9
Q ss_pred ccccCccccccccccccCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHH
Q 030285 51 SVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILR 130 (180)
Q Consensus 51 ~~~~~~~~~f~~~KKKKKK~~~~~~~~~e~~~~~e~~~~~~~~~~~~~gi~~~~~~~~w~~~~~~y~YeeLL~R~f~~L~ 130 (180)
.+++.++..+.++||||||++..+.++++...+++..+....++.++ ++. ++.++|.|++++|.|+|||.|+|++|+
T Consensus 17 ~~~~~l~~~~~~kKKKKkk~k~~s~~ee~~~~~~e~~~e~~~~~~e~-~~~--~~~~~~~g~e~dy~Y~ElL~rvf~ilr 93 (231)
T KOG2768|consen 17 EASERLDFLSLKKKKKKKKSKSLSALEEEDVNAGEFADEDKDPDKEV-RQN--QQGVSWVGSEPDYTYYELLSRVFNILR 93 (231)
T ss_pred chhhcccccccccccccCCCCchhhhHHHHHhccchhhhccChhhcc-ccc--cccccccccCCCccHHHHHHHHHHHHH
Confidence 34555666666666666666655555554444444333221222221 133 334999999999999999999999999
Q ss_pred hcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 131 ENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 131 ~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
++||+++|++++|+|+||||.|+| |||+|.||+|||++|||+|+||++|
T Consensus 94 eknpe~aGe~~k~v~~PPqvlReg-kkT~f~Nf~Dick~mhR~pdHv~~F 142 (231)
T KOG2768|consen 94 EKNPELAGEKRKFVMKPPQVLREG-KKTVFVNFADICKTMHRSPDHVMQF 142 (231)
T ss_pred hcCchhcccccceeeCCHHHHhhc-cceeeeeHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999 7799999999999999999999987
No 2
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=99.83 E-value=4.6e-21 Score=152.98 Aligned_cols=61 Identities=31% Similarity=0.450 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 115 ~y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|+|++||+|||+.| |+..++..||.||+|||.++|+ ||+|.||.+||++|||+|+||+.|
T Consensus 4 ~~~Y~~lL~R~~~~l----p~~~~~~~R~~~p~~~v~~eG~-kTvi~Nf~~I~~~L~R~~~hv~ky 64 (138)
T PRK03988 4 YYDYEELLDRAYEKL----PEKVFKESRFEVPKPDVRIEGN-RTIIRNFKEIADRLNRDPKHVAKF 64 (138)
T ss_pred ccCHHHHHHHHHHHC----ccccCCCcceeCCCCeEEEEcC-cEEEecHHHHHHHHCCCHHHHHHH
Confidence 589999999999999 8888888999999999999996 599999999999999999999754
No 3
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=99.79 E-value=5.9e-20 Score=145.84 Aligned_cols=59 Identities=25% Similarity=0.426 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 117 ~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|++||+|||+.| |+..++..||.||+|+|.++|+| |+|.||.+||++|||+|+||+-|
T Consensus 1 ~Y~~lL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG~k-Tvi~Nf~~Ia~~L~R~~~~v~ky 59 (133)
T TIGR00311 1 DYEKLLERAIDQL----PDEVFETKRFEVPKAYIVIEGNR-TIIQNFREVAKALNRDEQHLLKY 59 (133)
T ss_pred CHHHHHHHHHHHC----ccccCCCccccCCCceEEEEcCc-EEEecHHHHHHHHCCCHHHHHHH
Confidence 5999999999999 88778889999999999999965 99999999999999999999754
No 4
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=99.78 E-value=1.4e-19 Score=151.15 Aligned_cols=60 Identities=30% Similarity=0.516 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 116 y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
|+|++||+|||+.| |+..++..||.||+|||.++| +||+|.||.+||++|||+|+||+-|
T Consensus 1 ~~Y~~lL~r~~~~l----~~~~~~~~R~~~p~~~v~~eG-~kT~i~N~~~i~~~l~R~~~~~~ky 60 (201)
T PRK12336 1 MDYESLLDRAMEVL----PEPTKSGERFSIPEPKIFIEG-KTTILTNFGEIADALNRDPDHLMKF 60 (201)
T ss_pred CCHHHHHHHHHHHC----CcccCCccceecCCceEEEEc-CcEEEecHHHHHHHHCCCHHHHHHH
Confidence 68999999999999 998888899999999999999 5699999999999999999999754
No 5
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1e-15 Score=124.17 Aligned_cols=62 Identities=32% Similarity=0.479 Sum_probs=56.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCccccc-ceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 114 RDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 114 ~~y~YeeLL~R~f~~L~~~NPd~a~~~~-Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
..|.|++||+|+|..| |+..+... ||.||+|.|.++|++ ||+.||.+||++|||||+|++.|
T Consensus 4 ~~~~yeelLeR~~~~l----P~~~~~~~~R~~ip~~~i~~~g~~-Ti~~Nf~dia~~l~rDp~h~~k~ 66 (151)
T COG1601 4 MEDDYEELLERAYSEL----PEKEVKNDERFRIPEPEINREGNR-TIIRNFGDIAEALNRDPEHLVKF 66 (151)
T ss_pred hhhhHHHHHHHHHHhC----CccccccccceecCCcceecccch-hHHHhHHHHHHHhcCCHHHHHHH
Confidence 4578999999999776 99887765 999999999999966 99999999999999999999754
No 6
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=99.56 E-value=1.9e-15 Score=118.85 Aligned_cols=50 Identities=46% Similarity=0.664 Sum_probs=42.1
Q ss_pred hcCCC-CcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 131 ENNPE-LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 131 ~~NPd-~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
++||+ ..++..||.||+|+|.++|++||+|.||.+||++|||+|+||+.|
T Consensus 4 ~~np~~~~~~~~R~kmP~~~v~~eG~~KTvi~Nf~dI~~~L~R~p~~~~ky 54 (125)
T PF01873_consen 4 EKNPERSNSDKFRYKMPPPQVKIEGKKKTVIVNFVDICKALNRDPEHVLKY 54 (125)
T ss_dssp CSSTTTSCSSSSS-CCCT--EEEETSTEEEETTHHHHHHHHTSSHHHHHHH
T ss_pred HhCcCcccCCCcceecCCCeEEEEccceeeeecHHHHHHHHCCCHHHHHHH
Confidence 57899 466667999999999999988899999999999999999999754
No 7
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=99.48 E-value=1.8e-14 Score=111.28 Aligned_cols=40 Identities=48% Similarity=0.619 Sum_probs=37.5
Q ss_pred cceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 141 RRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 141 ~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
.||.||+|||.++|++||+|.||.+||++|||+|+||+.|
T Consensus 2 ~R~~~p~~~v~~eG~~kTvi~Nf~~I~~~L~R~p~hv~ky 41 (110)
T smart00653 2 YRFKMPPPQVLREGKGKTVIVNFADIAKALNRPPDHVLKF 41 (110)
T ss_pred CccccCCCeEEEEcCCeEEEEcHHHHHHHHCCCHHHHHHH
Confidence 4899999999999987899999999999999999999864
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=84.11 E-value=0.99 Score=41.84 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCc-----ccccceecCCCeEEEeCCceeEeechHHHHHHhCCcc
Q 030285 113 DRDYEYEELLGRVFNILRENNPELA-----GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVL 174 (180)
Q Consensus 113 ~~~y~YeeLL~R~f~~L~~~NPd~a-----~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp 174 (180)
.+++.-++|++++|..| .+. .....-..++|-|+|.|+. .+|+|.+|||+-
T Consensus 272 ~~~~nld~L~e~i~~~L-----~liRVYtK~~g~~pd~~~PlIlr~GsT------V~Dvc~~IH~~l 327 (365)
T COG1163 272 KKGINLDELKERIWDVL-----GLIRVYTKPPGEEPDFDEPLILRRGST------VGDVCRKIHRDL 327 (365)
T ss_pred ccCCCHHHHHHHHHHhh-----CeEEEEecCCCCCCCCCCCeEEeCCCc------HHHHHHHHHHHH
Confidence 44667899999999999 221 1122334579999999944 799999999964
No 9
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]
Probab=35.08 E-value=14 Score=32.46 Aligned_cols=21 Identities=38% Similarity=0.278 Sum_probs=14.3
Q ss_pred hccCCCCCcccccccccccCC
Q 030285 14 AELAPFDPTKKKKKKKVVIQD 34 (180)
Q Consensus 14 ~~l~~fd~~KKKKKKK~~~~d 34 (180)
..|..+++.|||||||.....
T Consensus 20 ~~l~~~~~~kKKKKkk~k~~s 40 (231)
T KOG2768|consen 20 ERLDFLSLKKKKKKKKSKSLS 40 (231)
T ss_pred hcccccccccccccCCCCchh
Confidence 456778887777777766443
No 10
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=31.31 E-value=49 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.4
Q ss_pred CCCeEEEeCCceeEeechHHHHHHhCC
Q 030285 146 RPPQVLREGTKKTVFVNFMDLCKTYVL 172 (180)
Q Consensus 146 ppPqV~reG~KKTif~NF~eIck~LnR 172 (180)
--|||+..| ..+-.|.+|...++.
T Consensus 58 ~vP~ifi~g---~~igg~~~~~~~~~~ 81 (85)
T PRK11200 58 TVPQIFVDQ---KHIGGCTDFEAYVKE 81 (85)
T ss_pred cCCEEEECC---EEEcCHHHHHHHHHH
Confidence 468999999 679999999988764
No 11
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=30.00 E-value=75 Score=23.52 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCC
Q 030285 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVL 172 (180)
Q Consensus 117 ~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnR 172 (180)
.|+++..++..+|+ ++-+++-.+.|-++-...+.+..+||+.|..
T Consensus 29 ~~~e~a~~l~~lL~-----------~~~i~~k~~~r~~~~~vYlK~~e~I~dfL~~ 73 (93)
T PF14527_consen 29 NDEEFAEQLKELLN-----------KFGINAKIIKRKNKYVVYLKDSEQISDFLKL 73 (93)
T ss_dssp S-HHHHHHHHHHHH-----------HH----EEEEESSEEEEEE--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----------HcCCCceeeeecCceEEEEcCHHHHHHHHHH
Confidence 57899999999993 4557777888888878899999999998863
No 12
>PF09271 LAG1-DNAbind: LAG1, DNA binding; InterPro: IPR015351 This domain is found in various eukaryotic hypothetical proteins and in the DNA-binding protein LAG-1. It adopts a beta sandwich structure, with nine strands in two beta-sheets, in a Greek-key topology, and allow for DNA binding []. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3IAG_C 3BRG_C 3NBN_A 2F8X_C 3V79_C.
Probab=28.73 E-value=36 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=9.9
Q ss_pred ccccceecCCCeEEEeCCc
Q 030285 138 GDRRRTVMRPPQVLREGTK 156 (180)
Q Consensus 138 ~~~~Rf~ippPqV~reG~K 156 (180)
|..+||--|||.|...|+-
T Consensus 15 G~EKRF~CPPP~v~L~G~~ 33 (140)
T PF09271_consen 15 GNEKRFFCPPPCVYLSGPG 33 (140)
T ss_dssp TT-----SS--EEEEESTH
T ss_pred cccccccCCCCeEEEECCC
Confidence 5668999999999999953
No 13
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=27.88 E-value=74 Score=23.16 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcc
Q 030285 118 YEELLGRVFNILRENNPELAG 138 (180)
Q Consensus 118 YeeLL~R~f~~L~~~NPd~a~ 138 (180)
|-..|+++.+.|+++.|.++.
T Consensus 59 Y~~ql~~l~~~l~~krp~~~~ 79 (81)
T PF01359_consen 59 YCQQLDKLKQALREKRPELVN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHHHhChHhhc
Confidence 889999999999999999864
No 14
>COG4936 PocR Predicted sensor domain [Signal transduction mechanisms / Transcription]
Probab=26.72 E-value=52 Score=27.59 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccch
Q 030285 119 EELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCL 176 (180)
Q Consensus 119 eeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~h 176 (180)
..||+.+.+-. +.. +.+-...|-+.|+--|-.-||.-.|..|+-.|+|
T Consensus 9 ~~ll~k~~d~F-------s~a---t~lA~VvVdihG~evs~l~NftpfCqlirs~pk~ 56 (169)
T COG4936 9 IGLLQKFQDNF-------SEA---TRLAAVVVDIHGKEVSKLSNFTPFCQLIRSTPKG 56 (169)
T ss_pred HHHHHHHHHHH-------HHh---hceeEEEEecCCceecchhcccHHHHHHHhCcch
Confidence 57888887766 211 2255667889999889999999999999999886
No 15
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=26.54 E-value=67 Score=29.61 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcccc---cceecCCCeEEEeCCceeEeechHHHHHHhCCcc
Q 030285 115 DYEYEELLGRVFNILRENNPELAGDR---RRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVL 174 (180)
Q Consensus 115 ~y~YeeLL~R~f~~L~~~NPd~a~~~---~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp 174 (180)
....+-||+|+...|+ --..-++ .+-..-.|-|+|-|.. ..++|.++||+-
T Consensus 273 ~lnld~lle~iWe~l~---L~rvYtKk~g~~Pdfdd~~vlr~g~t------ve~~C~~iHr~l 326 (364)
T KOG1486|consen 273 KLNLDRLLERIWEELN---LVRVYTKKKGQRPDFDDPLVLRKGST------VEDVCHRIHRTL 326 (364)
T ss_pred ccCHHHHHHHHHHHhc---eEEEEecCCCCCCCCCCceEEeCCCc------HHHHHHHHHHHH
Confidence 4567889999998882 1111122 2333447899999854 789999999963
No 16
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=25.74 E-value=1.3e+02 Score=22.79 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred HHHHhcC-CCCcccccceecCCCeEEEeCCceeEeechHHHHHH
Q 030285 127 NILRENN-PELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKT 169 (180)
Q Consensus 127 ~~L~~~N-Pd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~ 169 (180)
..++++. |.......+. ..||||+..| ..+-+|.++-.+
T Consensus 47 ~~mr~~~g~~~~~~~~~~-~lpPqiF~~~---~Y~Gdye~f~ea 86 (99)
T PF04908_consen 47 QWMRENAGPEEKDPGNGK-PLPPQIFNGD---EYCGDYEDFEEA 86 (99)
T ss_dssp HHHHHHT--CCCS-TSTT---S-EEEETT---EEEEEHHHHHHH
T ss_pred HHHHHhccccccCCCCCC-CCCCEEEeCC---EEEeeHHHHHHH
Confidence 4455555 4433333332 3678999999 788888887544
No 17
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=25.26 E-value=52 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.536 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 030285 119 EELLGRVFNILRENNPEL 136 (180)
Q Consensus 119 eeLL~R~f~~L~~~NPd~ 136 (180)
.+||.++++.+++.+|+.
T Consensus 49 ~~lL~~F~~~i~~~dPd~ 66 (188)
T cd05781 49 RKIIREFVKYVKEYDPDI 66 (188)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 699999999999999993
No 18
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=21.00 E-value=1e+02 Score=26.42 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCCccCCCCCcchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchh
Q 030285 104 RQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLL 177 (180)
Q Consensus 104 ~~~~~w~~~~~~y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl 177 (180)
+...+|...+.--.|..||.-+=.+=+ .|+| ..-|+| --|.+|.|+..|-
T Consensus 123 ~~~~~~~~~~~~~kY~~LL~vieEmgk-------------eirp---Tyagsk--------s~~ERLKr~I~hA 172 (189)
T KOG4713|consen 123 QSIGNDENQNGQTKYADLLSVIEEMGK-------------EIRP---TYAGSK--------SAMERLKRDIIHA 172 (189)
T ss_pred hhcCCcccCccchHHHHHHHHHHHHhc-------------ccCc---cccccc--------cHHHHHHhhHHHH
Confidence 445567766655568999875443331 2333 133444 2388999988773
Done!